Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007582.1 Hibiscus syriacus cultivar Beakdansim tig00021657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 162130
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
File 2 of 2
Found at i:146655 original size:11 final size:11
Alignment explanation
Indices: 146639--146669 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
146629 TTTAATAAAA
146639 ATTATAATTCT
1 ATTATAATTCT
146650 ATTATAATTCT
1 ATTATAATTCT
*
146661 ATTAAAATT
1 ATTATAATT
146670 ATAATTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (11 bp):
ATTATAATTCT
Found at i:146670 original size:17 final size:17
Alignment explanation
Indices: 146650--146741 Score: 57
Period size: 17 Copynumber: 5.5 Consensus size: 17
146640 TTATAATTCT
146650 ATTATAATTCTATTAAA
1 ATTATAATTCTATTAAA
** **
146667 ATTATAATTAAATTTTA
1 ATTATAATTCTATTAAA
* *
146684 A-TA-AATT-GATTAAT
1 ATTATAATTCTATTAAA
* * *
146698 TTTAAATAAATCT-TTATA
1 ATT--ATAATTCTATTAAA
146716 ATTATAATTCTATTAAA
1 ATTATAATTCTATTAAA
146733 ATTATAATT
1 ATTATAATT
146742 TTAATATTTA
Statistics
Matches: 53, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
14 3 0.06
15 5 0.09
16 9 0.17
17 28 0.53
18 8 0.15
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (17 bp):
ATTATAATTCTATTAAA
Found at i:146832 original size:42 final size:43
Alignment explanation
Indices: 146783--146872 Score: 146
Period size: 43 Copynumber: 2.1 Consensus size: 43
146773 TTTAAGTTAT
*
146783 AATTAGGA-TTTATTTACATAATAAGTAATTTAAGTTGTTTAG
1 AATTAGGATTTTATTTACATAACAAGTAATTTAAGTTGTTTAG
* *
146825 AATTAGGATTTTTTTTACATAACAAGTAATTTAATTTGTTTAG
1 AATTAGGATTTTATTTACATAACAAGTAATTTAAGTTGTTTAG
146868 AATTA
1 AATTA
146873 AAAATTTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 8 0.18
43 36 0.82
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (43 bp):
AATTAGGATTTTATTTACATAACAAGTAATTTAAGTTGTTTAG
Found at i:147348 original size:42 final size:41
Alignment explanation
Indices: 147301--147414 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 41
147291 GCCAATTCTA
147301 ACTTATAT-AAATTAAAAATCCTAATTCTAAACAAATTAAATT
1 ACTTATATGAAA--AAAAATCCTAATTCTAAACAAATTAAATT
* *
147343 ACTTATTATGTAAAAAAATCCTAATTCTAAACAACTTAAATT
1 ACTTA-TATGAAAAAAAATCCTAATTCTAAACAAATTAAATT
* * *
147385 ACTTATTATGTAAATAAATCCTATTTCTAA
1 ACTTA-TATGAAAAAAAATCCTAATTCTAA
147415 CTTAAAAATC
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
42 61 0.92
43 3 0.05
44 2 0.03
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (41 bp):
ACTTATATGAAAAAAAATCCTAATTCTAAACAAATTAAATT
Found at i:147474 original size:17 final size:17
Alignment explanation
Indices: 147452--147543 Score: 59
Period size: 17 Copynumber: 5.6 Consensus size: 17
147442 TAAATATTAA
147452 AATTATAATTTTAATAG
1 AATTATAATTTTAATAG
*
147469 AATTATAATTAT-A-AG
1 AATTATAATTTTAATAG
* *
147484 AATT-T-A-TTTAAAATT
1 AATTATAATTTTAATA-G
* ** **
147499 AATTATTTATTAAAATTT
1 AATTA-TAATTTTAATAG
147517 AATTATAATTTTAATAG
1 AATTATAATTTTAATAG
147534 AATTATAATT
1 AATTATAATT
147544 AAATTAAAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
12 2 0.04
13 2 0.04
14 2 0.04
15 10 0.18
16 1 0.02
17 29 0.52
18 7 0.12
19 3 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
AATTATAATTTTAATAG
Found at i:147508 original size:18 final size:18
Alignment explanation
Indices: 147485--147522 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
147475 AATTATAAGA
147485 ATTTATTTAAAA-TTAATT
1 ATTTA-TTAAAATTTAATT
147503 ATTTATTAAAATTTAATT
1 ATTTATTAAAATTTAATT
147521 AT
1 AT
147523 AATTTTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTATTAAAATTTAATT
Found at i:147646 original size:17 final size:18
Alignment explanation
Indices: 147624--147657 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
147614 TAAAATTATA
147624 ATTAATTTT-AATAAATG
1 ATTAATTTTAAATAAATG
147641 ATTAATTTTAAATAAAT
1 ATTAATTTTAAATAAAT
147658 TCTTATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
ATTAATTTTAAATAAATG
Found at i:149704 original size:112 final size:112
Alignment explanation
Indices: 149368--150054 Score: 991
Period size: 112 Copynumber: 6.1 Consensus size: 112
149358 TTGTCGGTTT
* *
149368 GTGTCGATATTTTATAAAAATATATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* *
149433 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCTGATATATTGAAA
66 GATCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* * * *
149480 GTGTCGATACTTTATAAAAATATATTGATCCATAACAACATAACAAGTAAAAAAAATGATAAAAC
1 GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAGGT-AAAAAAATGACAAAAC
* *
149545 CGATCTATAAATGACAAAACAGGTCAAGCGCTATCGGATATATTGAAA
65 CGATCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* **
149593 GTGTCGATACTTTATAAAAATGTATTAATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
149658 GATCTATAAATGACAAAACAGTTAAAGCGCTACCGGATATATTGAAA
66 GATCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* * *
149705 GTGTCGATACTTTATAAAAATGTATCGATCCACAACAATATAACAGGT-AAAAAATGACAAAAAC
1 GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* * * *
149769 GGTCTATAAATGACAAAATAGGTAAAGCGCTACCAGATATATTAAAA
66 GATCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* * * *
149816 GTGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAAAAGGTAAAAAAATAACAAAACC
1 GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* * * *
149881 GGTCTATAAATGACAAAACAGGTAAAGCGCTACTGGATATGTTGATA
66 GATCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* *
149928 GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACATGTAAAAATATGACAAAACC
1 GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
** * * * * *
149993 -AGTCTCGAAATGATAAAACCGGTAAAGAGCTACCGAATATGTTGAAA
66 GA-TCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
*
150040 GTGTCGATATTTTAT
1 GTGTCGATACTTTAT
150055 TATAAGTATC
Statistics
Matches: 520, Mismatches: 52, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
111 102 0.20
112 315 0.61
113 103 0.20
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (112 bp):
GTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
GATCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
Found at i:149889 original size:223 final size:222
Alignment explanation
Indices: 149368--150054 Score: 1014
Period size: 223 Copynumber: 3.1 Consensus size: 222
149358 TTGTCGGTTT
* *
149368 GTGTCGATATTTTATAAAAATATATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
149433 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCTGATATATTGAAAGTGTCGATACTTTATAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAA
* * * *
149498 AATATATTGATCCATAACAACATAACAAGTAAAAAAAATGATAAAACCGATCTATAAATGACAAA
131 AATATATCGATCCATAACAATATAACAAGT--AAAAAATGACAAAACCGGTCTATAAATGACAAA
* *
149563 ACAGGTCAAGCGCTATCGGATATATTGAAA
194 ACAGGTAAAGCGCTA-CCGATATATTGAAA
*
149593 GTGTCGATACTTTATAAAAATGTATTAATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* *
149658 GATCTATAAATGACAAAACAGTTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAA
* * * * *
149723 AATGTATCGATCCACAACAATATAACAGGTAAAAAATGACAAAAACGGTCTATAAATGACAAAAT
131 AATATATCGATCCATAACAATATAACAAGTAAAAAATGACAAAACCGGTCTATAAATGACAAAAC
*
149788 AGGTAAAGCGCTACCAGATATATTAAAA
196 AGGTAAAGCGCTACC-GATATATTGAAA
* * * *
149816 GTGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAAAAGGTAAAAAAATAACAAAACC
1 GTGTCGATACTTTATAAAAATGTATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* * *
149881 GGTCTATAAATGACAAAACAGGTAAAGCGCTACTGGATATGTTGATAGTGTCGATACTTTATAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAA
* * ** *
149946 AATATATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCAGTCTCGAAATGATAAAA
131 AATATATCGATCCATAACAATATAACAAGTAAAAA-ATGACAAAACCGGTCTATAAATGACAAAA
* * *
150011 CCGGTAAAGAGCTACCGAATATGTTGAAA
195 CAGGTAAAGCGCTACCG-ATATATTGAAA
*
150040 GTGTCGATATTTTAT
1 GTGTCGATACTTTAT
150055 TATAAGTATC
Statistics
Matches: 417, Mismatches: 42, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
222 1 0.00
223 207 0.50
224 60 0.14
225 149 0.36
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (222 bp):
GTGTCGATACTTTATAAAAATGTATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAA
AATATATCGATCCATAACAATATAACAAGTAAAAAATGACAAAACCGGTCTATAAATGACAAAAC
AGGTAAAGCGCTACCGATATATTGAAA
Found at i:150317 original size:112 final size:112
Alignment explanation
Indices: 150111--150348 Score: 368
Period size: 112 Copynumber: 2.1 Consensus size: 112
150101 GCCAATAAAG
* * * *
150111 TGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAACAGGTAAAAATATGACAAAACCG
1 TGTCGATATTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATAACAAAACCG
*
150176 GTCTATAAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAAA
66 ATCTATAAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAAA
* *
150223 TGTCAATATTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATAATAAAACCG
1 TGTCGATATTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATAACAAAACCG
* * * * *
150288 ATCTATAAATGACAAAACAGGTAAAGCGCTATCGAGTATGTTGATAG
66 ATCTATAAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAAA
150335 TGTCGATATTTTAT
1 TGTCGATATTTTAT
150349 TATAAGTATT
Statistics
Matches: 113, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
112 113 1.00
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.28
Consensus pattern (112 bp):
TGTCGATATTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATAACAAAACCG
ATCTATAAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAAA
Found at i:150342 original size:294 final size:294
Alignment explanation
Indices: 149813--150530 Score: 1114
Period size: 294 Copynumber: 2.4 Consensus size: 294
149803 AGATATATTA
* * *
149813 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAAAAGGTAAAAAAATAACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAACAGGTAAAAATATGACAAA
* *
149878 ACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACTGGATATGTTGATAGTGTCGATACTTTAT
66 ACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATATTTTAT
* * * * *
149943 AAAAATATATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCAGTCTCGAAATGATA
131 AAAAATATATCGATCCATAACAATATAACAGGTAAAAAAATAACAAAACCAGTCTAGAAATGACA
* **
150008 AAACCGGTAAAGAGCTACCGAATATGTTGAAAGTGTCGATATTTTATTATAAGTATCGGCACTTT
196 AAACAGGTAAAGAGCTACCGAATATGTTGAAAGTGTCGATATTTTATTATAAGTATCAACACTTT
150073 TGGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
261 TGGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
150107 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAACAGGTAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAACAGGTAAAAATATGACAAA
* * * * *
150172 ACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAAATGTCAATATTTTAT
66 ACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATATTTTAT
* * *
150237 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATAATAAAACC-GATCTATAAATGAC
131 AAAAATATATCGATCCATAACAATATAACAGGTAAAAAAATAACAAAACCAG-TCTAGAAATGAC
* * * * *
150301 AAAACAGGTAAAGCGCTATCGAGTATGTTGATAGTGTCGATATTTTATTATAAGTATTAACACTT
195 AAAACAGGTAAAGAGCTACCGAATATGTTGAAAGTGTCGATATTTTATTATAAGTATCAACACTT
* *
150366 TTGGAATTTAAAAGAGAAGAAGTTATAGCGCTAAT
260 TTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
* *
150401 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAACAGGTAAAAATATGACAAA
** * *
150466 ACCGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAGTGTCGATATTTTAT
66 ACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATATTTTAT
150531 TATAAGTATC
Statistics
Matches: 384, Mismatches: 39, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
293 1 0.00
294 383 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.28
Consensus pattern (294 bp):
AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAACAGGTAAAAATATGACAAA
ACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATATTTTAT
AAAAATATATCGATCCATAACAATATAACAGGTAAAAAAATAACAAAACCAGTCTAGAAATGACA
AAACAGGTAAAGAGCTACCGAATATGTTGAAAGTGTCGATATTTTATTATAAGTATCAACACTTT
TGGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
Found at i:150539 original size:182 final size:181
Alignment explanation
Indices: 150223--150852 Score: 983
Period size: 182 Copynumber: 3.5 Consensus size: 181
150213 ATATTGAAAA
* * * * *
150223 TGTCAATATTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATAATAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCG
* ** * *
150288 ATCTATAAATGACAAAACAGGTAAAGCGCTATCGAGTATGTTGATAGTGTCGATATTTTATTATA
66 GTCTCGAAATGACAAAACCGGTAAAGAGCTATCGA-TATGTTGATAGTGTCGATATTTTATTATA
*
150353 AGTATTAACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCTAATAAAG
130 AGTATTGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCTAATAAAG
*
150405 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCG
*
150470 GTCTCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAGTGTCGATATTTTATTATA
66 GTCTCGAAATGACAAAACCGGTAAAGAGCTATC-GATATGTTGATAGTGTCGATATTTTATTATA
* * *
150535 AGTATCGACACTTTTGAAATTTAAAAGAGAATAAGTTATAGCGCTAATAAAG
130 AGTATTGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCTAATAAAG
*
150587 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCG
* * * * *
150652 GTCTCGAACTGATAAAATCGGTAAAGAGCTATTAGATATGTTGAAAGTGTCGA-ATTTTATTATA
66 GTCTCGAAATGACAAAACCGGTAAAGAGCTA-TCGATATGTTGATAGTGTCGATATTTTATTATA
* *
150716 AGTATTGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAG
130 AGTATTGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCTAATAAAG
** *
150768 TGTCGATACTTTATAAAAATGTATTAATCCATAACAATATAACAGGTAAAAATATGACAAAATCG
1 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCG
150833 GTCTCGAAATGACAAAACCG
66 GTCTCGAAATGACAAAACCG
150853 ATAGTAAAAA
Statistics
Matches: 412, Mismatches: 34, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
181 136 0.33
182 274 0.67
183 2 0.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (181 bp):
TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCG
GTCTCGAAATGACAAAACCGGTAAAGAGCTATCGATATGTTGATAGTGTCGATATTTTATTATAA
GTATTGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCTAATAAAG
Found at i:151501 original size:23 final size:23
Alignment explanation
Indices: 151472--151519 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
151462 AAATAGATCA
*
151472 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTAATACATT
*
151495 ATATAAGCGCTACCTAATATATT
1 ATATAAGCGCTACCTAATACATT
151518 AT
1 AT
151520 TGTACATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (23 bp):
ATATAAGCGCTACCTAATACATT
Done.