genome.fa.s7583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007583.1 Hibiscus syriacus cultivar Beakdansim tig00021682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66845

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2095--2339	123	2.0	123	95	0	445	20	28	9	40	1.84
3894--4044	45	3.3	45	93	3	239	39	21	9	29	1.86
8709--8759	24	2.1	24	100	0	102	27	11	31	29	1.92
14093--14133	2	20.5	2	100	0	82	0	51	0	48	1.00
15489--15736	130	1.9	130	94	0	433	35	14	12	36	1.85
15503--15767	130	2.0	129	82	4	318	39	12	13	34	1.83
16064--16126	28	2.3	27	78	8	63	46	1	3	49	1.27
16206--16239	16	2.0	18	88	11	54	64	5	2	26	1.30
16362--16404	21	2.0	21	100	0	86	39	0	13	46	1.44
16373--16458	35	2.5	35	84	0	100	37	1	20	40	1.61
16953--16990	17	2.1	19	85	9	53	39	0	55	5	1.23
20334--20394	30	2.0	30	84	6	79	42	8	19	29	1.80
21518--21570	20	2.7	19	83	13	63	39	3	18	37	1.69
22853--22936	26	3.2	26	86	3	116	34	10	25	29	1.90
30674--31552	84	10.5	84	86	1	1156	23	18	22	34	1.96
32307--32545	95	2.5	95	85	5	322	29	18	18	33	1.95
36792--36949	21	7.8	20	72	7	86	38	24	17	18	1.93
36917--37145	20	11.4	20	81	5	230	37	25	17	19	1.94
37836--37882	24	2.0	24	87	8	69	25	14	21	38	1.92
39803--40096	53	5.5	55	87	9	341	46	17	22	13	1.83
39803--40096	19	16.4	19	81	15	376	46	17	22	13	1.83
39803--40096	72	4.1	72	87	4	450	46	17	22	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39836--40096	143	1.8	144	99	0	515	45	16	23	14	1.84
40111--40198	19	4.8	19	79	14	114	13	21	15	48	1.80
40092--40198	53	2.0	52	94	1	187	14	22	16	46	1.83
40289--40325	14	2.6	14	91	0	65	45	21	0	32	1.52
41636--41718	20	4.2	20	81	6	114	46	16	24	12	1.81
41634--41747	19	6.1	19	74	15	103	45	18	24	11	1.82
41759--41815	14	3.7	14	75	20	60	8	24	22	43	1.81
41743--41822	33	2.4	33	95	0	142	8	21	22	47	1.78
41803--41876	21	3.5	21	78	7	87	16	20	16	47	1.83
41956--42026	33	2.2	33	92	0	115	49	16	22	11	1.78
42406--42558	20	7.6	20	84	4	182	19	18	26	35	1.95
42552--42622	21	3.4	20	75	13	54	25	18	22	33	1.96
47844--47896	28	1.9	27	84	3	70	50	15	0	33	1.44
48086--48140	25	2.2	24	81	9	65	18	10	34	36	1.86
48094--48153	25	2.4	25	82	0	75	13	13	38	35	1.84
49798--50735	218	4.3	218	95	1	1682	34	13	13	38	1.84
50923--51602	218	3.1	218	97	0	1270	33	13	12	40	1.83
52496--52529	15	2.2	16	89	5	52	76	5	2	14	1.09
54663--54724	25	2.5	25	81	5	72	62	3	3	30	1.26

Tables:   1

The End!