genome.fa.s7584.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007584.1 Hibiscus syriacus cultivar Beakdansim tig00021708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  251632

Tables:   1   2   

This is table  1  of  2  ( 134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154--265	55	2.0	56	91	3	181	17	10	26	44	1.82
1827--1870	23	1.9	23	85	0	61	22	15	25	36	1.94
1835--1880	23	2.0	23	91	4	76	19	13	28	39	1.89
12670--12725	20	2.8	20	91	0	85	25	1	48	25	1.61
13119--13162	3	14.3	3	95	4	79	31	0	0	68	0.90
14942--15053	55	2.0	56	91	3	181	17	10	26	44	1.82
16570--16619	23	2.2	23	85	0	64	24	14	24	38	1.92
16578--16624	23	2.0	23	95	0	85	19	12	27	40	1.88
26117--26170	24	2.2	24	87	6	74	33	3	11	51	1.55
32738--32793	20	2.8	20	91	0	85	25	1	48	25	1.61
33174--33235	3	21.0	3	93	3	108	33	0	0	66	0.92
35033--35110	18	4.3	18	70	14	70	17	10	29	42	1.83
35026--35136	57	2.0	54	89	5	168	18	10	27	44	1.82
36658--36707	23	2.2	23	85	0	64	24	14	24	38	1.92
36666--36712	23	2.0	23	95	0	85	19	12	27	40	1.88
43105--43135	14	2.1	15	94	5	55	38	0	22	38	1.54
45894--45947	24	2.2	24	87	6	74	33	3	11	51	1.55
46143--46192	2	25.5	2	95	4	93	50	0	0	50	1.00
47615--47670	20	2.8	20	91	0	85	25	1	48	25	1.61
48053--48105	3	18.0	3	92	3	90	33	0	0	66	0.92
55352--55508	20	7.7	20	71	13	86	31	25	17	25	1.97
55413--55518	41	2.6	41	93	0	176	37	22	16	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55925--56033	19	5.4	19	80	13	128	29	29	5	35	1.80
55925--56035	44	2.7	43	84	11	137	30	28	5	35	1.80
59856--59903	20	2.4	20	89	0	69	31	29	14	25	1.95
60020--60085	21	3.2	21	76	8	82	37	18	21	22	1.94
60025--60081	19	2.9	19	78	5	69	38	17	19	24	1.93
60089--60155	21	3.2	21	73	12	66	20	16	22	40	1.91
60121--60178	19	2.9	20	82	7	73	18	15	22	43	1.88
60089--60178	41	2.2	40	86	5	119	21	15	23	40	1.91
61681--61728	23	2.1	23	88	0	69	35	12	18	33	1.89
62156--62218	23	2.7	24	85	7	85	39	19	6	34	1.77
62622--62708	39	2.2	39	95	0	156	17	13	20	48	1.81
62960--63023	24	2.6	25	72	13	62	50	10	4	34	1.59
62968--63004	18	2.1	18	89	0	56	51	10	5	32	1.60
63393--63443	25	2.0	25	92	0	84	39	19	7	33	1.81
63899--64427	183	2.9	183	94	0	916	33	16	14	35	1.89
65893--65937	3	15.0	3	90	0	72	28	33	2	35	1.70
65931--65985	12	4.6	12	88	0	74	16	36	12	34	1.87
65927--65988	18	3.4	18	84	0	88	16	35	11	37	1.84
65894--65977	6	14.5	6	80	7	66	22	34	8	34	1.84
67449--68618	198	5.9	199	98	0	2229	30	16	15	37	1.90
68737--68785	19	2.6	19	93	0	80	57	10	2	30	1.43
70579--70639	32	1.9	32	89	0	95	22	47	0	29	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70673--70737	21	3.1	21	80	6	69	15	29	15	40	1.88
72963--73001	20	1.9	21	94	5	71	23	15	12	48	1.79
72960--73006	20	2.4	19	82	10	67	21	17	10	51	1.75
74298--74327	16	1.9	15	93	6	51	30	6	33	30	1.83
79041--79105	30	2.1	31	94	2	114	33	16	13	35	1.89
79048--79112	30	2.2	30	91	0	103	32	18	10	38	1.85
79048--79135	30	2.9	30	81	10	90	34	17	12	36	1.87
79175--79230	26	2.2	26	86	0	76	26	26	17	28	1.98
79181--79238	26	2.2	26	93	0	98	22	24	18	34	1.96
79919--79964	20	2.3	20	100	0	92	21	17	19	41	1.90
80262--80290	10	2.9	10	100	0	58	10	48	0	41	1.37
80503--80577	32	2.4	30	80	6	78	36	12	17	34	1.87
82280--82312	15	2.3	15	94	5	59	63	0	6	30	1.18
82352--82377	13	2.0	13	100	0	52	15	0	38	46	1.46
84950--85001	2	26.0	2	100	0	104	50	0	0	50	1.00
86633--86696	27	2.5	26	87	7	94	48	3	17	31	1.62
90859--90898	20	2.0	20	100	0	80	10	10	35	45	1.71
95574--95629	23	2.4	23	100	0	112	30	21	19	28	1.98
97127--97204	30	2.6	29	80	8	84	44	3	17	33	1.67
97407--97449	20	2.2	20	100	0	86	18	0	37	44	1.50
98052--98089	11	3.5	11	82	7	51	23	2	21	52	1.59
99150--99336	102	1.8	103	82	3	243	20	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101938--101982	23	2.0	23	86	0	63	53	17	2	26	1.56
103189--103229	22	1.9	22	85	5	57	78	4	12	4	1.07
111633--111675	17	2.6	17	85	3	61	44	4	0	51	1.22
113820--113893	23	3.3	23	82	3	105	27	16	16	40	1.89
113827--113891	22	2.9	23	83	4	87	30	16	12	40	1.86
115674--115734	30	2.0	31	93	3	106	60	6	11	21	1.53
125672--125716	22	2.0	22	95	0	81	44	20	8	26	1.80
127826--127902	3	25.7	3	97	0	145	31	0	0	68	0.90
128066--128091	2	13.0	2	100	0	52	50	0	0	50	1.00
129337--129469	60	2.2	59	80	5	142	42	5	19	32	1.73
138946--139001	24	2.3	24	93	0	94	30	16	14	39	1.88
139619--139658	2	20.0	2	100	0	80	50	0	0	50	1.00
139888--140161	135	2.0	134	97	0	512	29	5	10	54	1.56
140787--140821	17	2.1	17	94	0	61	42	25	0	31	1.55
141103--141228	5	25.2	5	98	0	243	39	0	0	59	1.03
149830--149862	3	11.0	3	100	0	66	66	33	0	0	0.92
154232--154711	182	2.6	181	88	2	705	42	13	16	27	1.85
156885--156914	15	2.0	15	93	0	51	20	13	50	16	1.78
157270--157308	18	2.2	18	95	0	69	56	0	35	7	1.28
157607--157642	17	2.1	17	100	0	72	50	8	11	30	1.67
158791--158840	19	2.6	19	93	0	82	30	2	10	58	1.42
158983--159519	199	2.7	198	82	5	643	38	16	13	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163864--164386	198	2.6	198	78	5	497	39	14	15	31	1.87
164381--164543	87	1.9	87	90	0	263	31	14	11	42	1.81
164465--164509	23	2.0	23	90	0	72	37	17	8	35	1.81
165566--165689	40	3.1	40	89	1	178	35	17	5	41	1.73
169623--169945	43	7.5	43	74	13	220	24	14	8	52	1.69
169669--169814	40	3.5	40	78	13	136	24	14	9	51	1.72
169669--169827	83	1.9	83	82	7	200	23	13	9	52	1.70
169801--169919	45	2.7	45	78	12	138	26	15	9	49	1.74
169802--169964	44	3.7	44	79	11	138	25	14	8	51	1.70
172157--172224	22	3.0	22	97	2	127	26	27	26	19	1.99
172438--172496	30	2.0	30	93	0	100	33	23	3	38	1.72
172863--173035	67	2.6	67	85	4	215	17	27	27	27	1.98
179067--179134	22	3.0	22	97	2	127	26	27	26	19	1.99
179348--179406	30	2.0	30	93	0	100	33	23	3	38	1.72
179774--179944	67	2.6	65	85	6	209	18	27	26	28	1.98
196587--196630	23	1.9	23	85	0	61	27	20	27	25	1.99
198518--198562	21	2.1	21	87	0	63	15	24	28	31	1.96
201539--201583	23	2.0	23	90	0	72	24	26	26	22	2.00
203327--203368	21	2.0	21	85	0	57	16	21	28	33	1.95
204535--204621	45	1.9	45	88	0	129	27	25	17	29	1.97
204526--204770	109	2.2	109	99	0	481	28	23	17	30	1.97
204644--204730	45	1.9	45	90	0	138	27	26	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212156--212195	20	2.0	20	90	0	62	12	7	27	52	1.66
212489--212537	16	3.0	16	87	3	71	46	0	40	12	1.41
212561--212589	13	2.1	14	93	6	51	41	13	6	37	1.72
214150--214196	22	2.0	25	84	12	64	51	2	17	29	1.57
214749--214961	103	2.1	103	95	0	381	26	13	23	36	1.92
214985--215045	23	2.7	23	92	0	95	19	27	26	26	1.99
215375--215427	16	3.2	16	72	5	52	30	1	26	41	1.66
230581--230628	21	2.3	21	88	0	69	27	18	37	16	1.92
232477--232520	23	1.9	23	90	0	70	25	13	22	38	1.91
236823--236974	7	22.1	7	90	6	208	13	11	47	26	1.78

Tables:   1   2