genome.fa.s7585.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007585.1 Hibiscus syriacus cultivar Beakdansim tig00021710_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55079

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12943--13159	43	5.0	43	93	0	371	17	26	23	31	1.97
12943--13192	86	2.9	86	88	4	369	19	25	22	32	1.97
12949--13192	43	5.7	43	87	3	305	19	25	22	32	1.97
12947--13192	129	1.9	130	89	2	388	19	25	21	32	1.97
17370--17400	2	15.5	2	100	0	62	48	0	0	51	1.00
19094--19246	65	2.4	65	84	3	184	30	19	21	28	1.98
20473--20525	23	2.3	23	83	0	61	54	26	0	18	1.44
22433--22500	23	3.0	22	69	16	59	26	17	25	30	1.97
29185--29239	2	27.5	2	100	0	110	50	0	0	49	1.00
29401--29493	24	3.9	24	84	0	96	48	18	13	19	1.81
29401--29470	12	5.8	12	76	6	70	51	18	14	15	1.77
29399--29507	48	2.3	47	83	3	128	47	17	15	19	1.82
29400--29507	24	4.5	24	76	4	94	47	17	15	19	1.83
31040--31139	31	3.2	31	63	31	77	27	27	10	36	1.88
31045--31167	63	2.0	63	100	0	246	27	28	9	34	1.89
32085--32116	7	4.4	7	92	7	55	25	28	34	12	1.92
32086--32176	8	12.5	8	69	26	69	17	24	42	15	1.88
32093--32181	13	6.3	13	83	14	106	15	23	44	15	1.85
32114--32185	31	2.3	31	100	0	144	11	22	50	16	1.77
32127--32168	18	2.3	18	100	0	84	9	23	50	16	1.75
32948--33007	2	30.0	2	100	0	120	50	0	0	50	1.00
34379--34413	2	17.5	2	93	0	61	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35485--35566	24	3.4	24	79	3	94	48	19	13	18	1.80
40202--40272	24	3.0	24	83	8	99	53	16	11	18	1.72
44467--44499	17	1.9	17	93	0	57	57	0	0	42	0.98
44609--44684	31	2.5	31	81	8	86	52	2	5	39	1.38
44707--44736	11	2.7	11	94	0	51	53	0	0	46	1.00
45083--45164	2	41.0	2	97	0	155	48	0	0	51	1.00
49754--50045	43	6.8	43	88	1	388	17	22	25	34	1.96
50887--50942	22	2.5	22	80	5	60	51	1	7	39	1.40
51072--51100	2	14.5	2	100	0	58	48	0	0	51	1.00
54251--54318	23	3.2	23	60	20	56	32	25	23	19	1.97
54202--54366	42	4.0	42	95	1	296	32	24	24	18	1.97
54202--54366	83	2.0	83	96	0	303	32	24	24	18	1.97

Tables:   1

The End!