Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007586.1 Hibiscus syriacus cultivar Beakdansim tig00021741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110541

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6662--6700
19
2.1
19
85
9
53
20
12
0
66
1.24
6952--7020
5
13.8
5
71
17
54
75
2
20
1
1.01
6951--7023
11
6.6
11
75
12
62
75
2
20
1
1.00
6955--7027
18
4.0
17
73
16
58
72
2
23
1
1.05
6949--7027
26
2.9
27
78
14
90
74
2
21
1
1.01
15206--15269
19
3.3
20
85
10
73
3
18
3
75
1.08
34479--34543
13
5.5
11
73
22
60
32
35
3
29
1.73
34466--34560
36
2.7
36
93
1
156
30
34
4
30
1.77
42879--42910
16
2.0
16
100
0
64
31
18
6
43
1.75
44324--44408
16
5.2
15
81
16
66
74
2
22
1
1.01
44323--44404
11
7.5
11
78
10
71
75
2
20
1
0.98
44335--44399
19
3.4
19
81
10
69
75
1
21
1
0.97
44323--44401
5
16.6
5
75
15
78
75
2
20
1
0.98
46500--46531
16
2.0
16
100
0
64
31
18
6
43
1.75
47939--48009
5
14.8
5
72
16
53
76
2
19
1
0.99
47939--48016
8
9.0
8
74
23
61
74
2
21
1
1.01
51706--51737
16
2.0
16
100
0
64
31
18
6
43
1.75
53169--53226
8
7.0
8
86
13
82
75
0
24
0
0.80
53158--53219
5
12.8
5
77
16
60
77
0
22
0
0.77
55307--55338
16
2.0
16
100
0
64
31
18
6
43
1.75
59799--59849
19
2.6
20
90
3
77
43
5
15
35
1.71
67922--67960
13
2.9
13
82
17
53
0
23
0
76
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67925--67988
27
2.2
29
83
8
78
1
18
4
75
1.06
67922--67963
18
2.4
17
81
14
50
0
23
0
76
0.79
67928--67987
19
3.2
17
77
15
57
1
18
5
75
1.07
68241--68284
20
2.2
20
84
8
54
61
2
15
20
1.45
70926--70976
20
2.6
20
90
3
77
35
15
5
43
1.71
75126--75176
20
2.6
20
90
3
77
35
15
5
43
1.71
90942--90993
19
2.6
21
87
6
81
44
7
15
32
1.75
91888--91941
24
2.3
24
93
3
92
20
18
24
37
1.94
101846--101918
5
14.8
5
74
16
64
2
19
1
76
0.98
101846--101919
16
4.6
16
75
15
64
2
18
1
77
0.97
101853--101918
8
7.9
8
78
20
55
3
19
1
75
1.01
101851--101913
13
5.1
12
72
12
56
3
19
1
76
1.01
101839--101920
18
4.6
18
80
10
73
2
20
2
74
1.05
102171--102206
18
1.9
20
88
11
58
66
0
11
22
1.22
104932--104961
13
2.4
13
94
5
53
26
30
0
43
1.55
107702--107758
22
2.7
21
76
10
53
8
17
10
63
1.51
108423--108476
24
2.3
24
93
3
92
20
18
24
37
1.94

Tables:   1

The End!