genome.fa.s7587.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007587.1 Hibiscus syriacus cultivar Beakdansim tig00021771_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44982

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121--253	32	4.2	32	91	2	196	14	30	36	18	1.90
121--386	64	4.0	65	71	17	208	15	32	33	19	1.92
300--386	31	2.7	31	80	3	111	14	28	35	20	1.93
8697--8829	32	4.2	32	88	2	187	15	30	35	18	1.92
8697--8829	65	2.1	63	87	2	185	15	30	35	18	1.92
8551--8935	94	4.1	93	72	19	339	12	36	33	17	1.88
8864--8997	63	2.1	62	97	1	250	10	37	38	13	1.79
8864--8961	31	3.1	31	66	13	92	9	37	39	13	1.76
8622--8986	189	1.9	189	85	7	499	12	34	35	17	1.87
8887--8990	31	3.3	32	68	15	92	11	34	40	13	1.81
9025--9067	22	1.9	22	85	4	59	9	37	39	13	1.78
8792--9078	155	1.8	157	88	6	440	12	36	35	15	1.85
9042--9176	32	4.2	32	91	2	200	14	31	36	17	1.90
9218--9306	33	2.8	32	82	1	115	14	28	37	20	1.92
17456--17844	95	4.1	95	72	7	383	12	36	33	16	1.87
17605--17738	32	4.2	32	88	1	187	15	30	35	17	1.92
17796--17900	32	3.3	32	68	13	101	11	34	40	13	1.80
17773--17907	63	2.1	63	98	0	261	10	37	39	13	1.79
17773--17870	31	3.1	31	66	13	92	9	37	39	13	1.76
17954--18085	32	4.2	32	92	3	205	14	31	36	18	1.90
17637--18056	158	2.7	159	80	8	532	13	34	34	17	1.89
17637--18220	158	3.6	156	75	11	459	13	34	34	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18132--18220	33	2.8	32	82	1	115	14	28	37	20	1.92
17501--18146	349	1.9	344	95	0	1134	12	34	34	17	1.88
26559--26692	32	4.2	32	88	1	187	15	30	35	17	1.92
26412--26798	94	4.1	94	72	18	352	12	36	33	17	1.88
26793--26834	21	2.0	21	85	4	57	9	35	40	14	1.78
26727--26857	59	2.1	62	93	5	223	10	38	38	12	1.79
26655--26938	153	1.9	154	88	5	441	11	37	35	15	1.84
26902--27034	32	4.2	32	91	2	196	14	30	36	18	1.90
27081--27169	33	2.8	32	82	1	115	14	28	37	20	1.92
35452--35583	32	4.2	32	87	3	178	15	31	34	18	1.92
35618--35749	62	2.2	61	93	5	223	10	38	37	13	1.80
35795--35928	32	4.2	33	89	5	186	14	32	35	17	1.90
35975--36061	33	2.7	31	77	10	104	14	28	35	20	1.93
44207--44595	95	4.1	94	71	8	356	12	36	33	17	1.88
44357--44488	32	4.2	32	87	3	178	15	31	34	18	1.92
44547--44651	32	3.3	32	68	13	101	11	34	40	13	1.80
44523--44658	63	2.2	63	98	0	263	10	37	38	13	1.78
44524--44621	31	3.1	31	66	13	92	9	37	39	13	1.76
44280--44647	190	1.9	191	84	7	498	12	34	35	17	1.87
44547--44779	95	2.4	96	71	11	251	12	35	36	15	1.86
44705--44837	32	4.2	32	91	2	196	14	30	36	18	1.90

Tables:   1

The End!