genome.fa.s7594.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007594.1 Hibiscus syriacus cultivar Beakdansim tig00021909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124587

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1121--1164	2	23.0	2	90	9	74	50	0	0	50	1.00
11056--11142	39	2.2	40	89	4	131	22	18	26	32	1.97
10238--11875	828	2.0	819	88	4	2470	34	11	16	37	1.85
11960--11988	2	14.5	2	100	0	58	48	0	0	51	1.00
12478--12886	20	17.7	20	65	25	118	21	22	11	44	1.84
12473--12898	47	9.1	47	90	1	658	21	22	11	45	1.83
12473--12898	142	3.0	141	90	1	667	21	22	11	45	1.83
13222--13276	22	2.6	21	83	8	76	27	25	14	32	1.95
13160--13348	95	2.0	96	85	3	256	29	23	13	33	1.93
19557--19881	27	13.6	27	66	25	196	21	20	12	45	1.84
19480--19872	47	8.4	47	90	1	594	22	21	12	43	1.86
19480--19872	140	2.8	140	89	2	601	22	21	12	43	1.86
19471--19872	187	2.1	186	89	2	608	22	21	12	43	1.85
20345--20398	22	2.6	21	77	13	58	29	24	12	33	1.92
20274--20469	95	2.1	96	85	4	263	28	22	14	34	1.94
21677--21713	8	4.6	8	100	0	74	54	0	45	0	1.00
21674--21728	24	2.3	24	80	0	74	49	0	40	10	1.38
27660--29194	200	7.7	199	88	2	2127	39	14	14	31	1.86
28686--28735	20	2.5	20	81	12	66	46	2	12	40	1.52
29409--29453	23	2.0	23	95	0	81	8	6	22	62	1.48
29523--29572	15	3.1	15	83	13	64	30	40	6	24	1.79
29527--29583	18	3.4	17	75	20	57	22	40	5	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39247--39325	23	3.5	22	68	6	70	30	17	21	30	1.96
41502--41539	20	1.9	20	94	0	67	26	23	18	31	1.97
41551--41707	64	2.4	63	81	8	174	23	25	19	31	1.98
48877--48916	6	6.7	6	91	0	53	42	2	32	22	1.67
50232--50283	24	2.2	24	89	6	79	32	3	13	50	1.60
50243--50295	24	2.2	24	86	0	70	35	1	13	49	1.53
51717--51747	15	2.1	15	100	0	62	48	19	6	25	1.72
51879--52815	198	4.7	197	84	3	1177	39	14	14	31	1.87
51872--52815	397	2.4	398	89	2	1427	39	14	14	31	1.87
57024--57310	148	1.9	149	92	3	490	39	15	16	28	1.88
57548--57710	87	1.9	87	93	0	281	33	14	12	39	1.84
57624--57682	23	2.6	23	80	0	73	32	16	10	40	1.82
59255--59521	4	66.5	4	80	2	86	0	17	48	33	1.51
59258--59533	8	34.4	8	84	7	204	0	18	48	32	1.51
59419--59547	12	10.7	13	86	9	127	0	24	48	27	1.51
61030--61060	14	2.1	15	94	5	55	58	0	0	41	0.98
62864--62910	21	2.2	22	85	7	62	10	12	0	76	1.02
63005--63047	21	2.1	21	87	8	63	39	13	23	23	1.90
67234--67277	2	22.5	2	95	4	81	52	0	0	47	1.00
68752--68806	29	2.0	27	83	16	69	21	7	27	43	1.79
68824--68882	28	2.1	28	93	0	100	15	6	30	47	1.71
77433--77472	17	2.4	17	100	0	80	37	10	20	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82568--82616	21	2.2	23	78	10	57	26	2	4	67	1.19
82698--82743	21	2.2	21	84	0	56	52	19	6	21	1.69
84642--84795	36	4.2	37	79	11	133	60	5	1	33	1.27
84659--84724	9	7.6	9	72	17	59	60	1	1	36	1.15
84675--84795	36	3.4	35	83	8	138	61	5	1	30	1.29
89375--89412	16	2.3	16	86	4	58	71	10	15	2	1.25
89376--89412	17	2.3	15	90	9	56	70	10	16	2	1.27
90687--90731	14	3.2	14	81	9	56	20	4	0	75	0.97
91279--91322	18	2.3	20	80	7	56	45	2	4	47	1.35
94118--94603	240	2.0	240	93	1	823	21	26	20	31	1.98
96201--96267	27	2.5	27	74	11	66	64	1	1	32	1.12
96959--96999	11	3.3	12	86	13	57	36	0	2	60	1.10
100077--100980	470	1.9	470	100	0	1808	34	15	18	31	1.92
105871--105914	17	2.6	17	85	3	54	34	18	20	27	1.96
113516--113896	54	7.1	54	86	2	520	26	19	19	34	1.96
113516--113896	107	3.6	107	86	1	543	26	19	19	34	1.96
120143--120409	53	5.1	54	83	5	323	29	18	16	34	1.94
120143--120409	106	2.5	106	87	4	380	29	18	16	34	1.94
120918--120968	20	2.5	20	96	0	93	23	9	15	50	1.73
124099--124135	19	1.9	19	88	0	56	83	8	5	2	0.88

Tables:   1

The End!