Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007595.1 Hibiscus syriacus cultivar Beakdansim tig00021910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82084

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3490--3553
23
2.8
22
85
4
83
26
26
26
20
1.99
3569--3782
101
2.1
100
93
3
358
36
24
12
26
1.91
4320--4362
21
2.0
21
86
0
59
16
25
27
30
1.97
6573--6622
23
2.2
23
85
0
64
24
24
22
30
1.99
7055--7093
13
3.0
13
85
10
53
35
10
2
51
1.50
8926--8966
22
1.9
21
85
5
55
24
34
24
17
1.96
11706--11745
12
3.4
12
79
6
55
20
22
22
35
1.96
11670--11758
23
3.8
23
90
1
124
24
23
23
28
2.00
11747--11779
17
1.9
17
93
0
57
33
27
15
24
1.95
13997--14062
23
2.9
23
79
0
78
21
27
21
30
1.98
16119--16188
28
2.7
26
82
6
79
17
20
25
37
1.94
16139--16194
28
2.0
28
92
0
94
19
19
26
33
1.96
22052--22092
8
5.2
8
82
5
57
34
0
29
36
1.58
22163--22663
128
3.9
128
97
0
957
23
24
19
32
1.97
23065--23165
34
3.0
34
83
0
139
38
2
3
54
1.34
23684--23777
21
4.5
21
87
10
138
21
27
32
18
1.96
23781--23828
21
2.3
21
85
0
60
22
12
39
25
1.89
25361--25434
34
2.1
36
85
5
98
60
5
0
33
1.19
25532--25610
33
2.4
32
81
12
90
59
1
0
39
1.06
26544--26650
34
3.1
33
78
14
85
34
0
3
61
1.14
26577--26655
34
2.4
34
85
8
101
37
0
1
60
1.05
26793--26846
17
3.2
17
72
0
54
31
0
3
64
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28374--28421
21
2.3
21
85
0
60
25
39
12
22
1.89
28425--28518
21
4.5
21
92
5
129
18
35
26
20
1.95
29040--29136
34
2.9
35
84
6
128
56
4
3
36
1.34
29524--30352
128
6.5
128
99
0
1622
32
19
25
22
1.97
30411--30451
8
5.2
8
88
5
66
36
26
0
36
1.57
30411--30451
15
2.6
16
84
7
57
36
26
0
36
1.57
33449--33487
12
3.2
12
88
3
60
43
0
0
56
0.99
41215--41275
32
1.9
31
84
15
81
47
1
3
47
1.28
45701--45754
17
3.2
17
72
0
54
31
0
3
64
1.11
47279--47326
21
2.3
21
88
0
69
25
37
12
25
1.91
47330--47421
21
4.5
21
86
8
118
17
35
26
20
1.95
47336--47418
20
4.1
20
86
7
96
18
36
25
20
1.95
47942--48038
33
2.9
34
85
3
124
56
4
2
37
1.30
47940--48045
34
3.2
32
82
8
122
55
4
1
37
1.32
48438--49066
128
4.9
128
94
3
1104
31
19
25
23
1.98
48438--49066
257
2.5
255
97
0
1195
31
19
25
23
1.98
49137--49177
8
5.2
8
85
5
57
39
26
0
34
1.57
49137--49177
15
2.6
16
84
7
57
39
26
0
34
1.57
69983--70016
16
2.1
17
88
5
52
44
20
0
35
1.52
70421--70501
37
2.2
37
91
4
130
44
17
4
33
1.70
71669--71718
24
2.1
24
85
7
66
58
12
2
28
1.45

Tables:   1

The End!