Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007596.1 Hibiscus syriacus cultivar Beakdansim tig00021919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102974
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:1054 original size:22 final size:21
Alignment explanation
Indices: 1028--1080 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
1018 TTTTTTGTTA
1028 AATAATTTAACTGTATTAAT-AT
1 AATAATTTAA-T-TATTAATAAT
1050 AATAATTTAATTATTAATAAT
1 AATAATTTAATTATTAATAAT
1071 AA-AA-TTAATT
1 AATAATTTAATT
1081 GATATAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.20
20 9 0.30
21 5 0.17
22 10 0.33
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
AATAATTTAATTATTAATAAT
Found at i:1069 original size:15 final size:16
Alignment explanation
Indices: 1042--1100 Score: 66
Period size: 18 Copynumber: 3.6 Consensus size: 16
1032 ATTTAACTGT
1042 ATTAATATAATAATTTA
1 ATTAAT-TAATAATTTA
**
1059 ATT-ATTAATAATAAA
1 ATTAATTAATAATTTA
1074 ATTAATTGATATAATTTA
1 ATTAATT-A-ATAATTTA
1092 ATTAATTAA
1 ATTAATTAA
1101 ATGTTTATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
15 11 0.31
16 6 0.17
17 5 0.14
18 13 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAATTAATAATTTA
Found at i:1829 original size:15 final size:14
Alignment explanation
Indices: 1796--1827 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
1786 ATTTTTAAAC
1796 TATATTTATTTTTA
1 TATATTTATTTTTA
1810 TATATTT-TTTTTA
1 TATATTTATTTTTA
1823 TATAT
1 TATAT
1828 ATCATTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TATATTTATTTTTA
Found at i:2052 original size:18 final size:17
Alignment explanation
Indices: 2022--2055 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
2012 TTTATACATA
*
2022 TTAAATTTGTTATTATT
1 TTAAATTTATTATTATT
2039 TTAAATTATATTATTAT
1 TTAAATT-TATTATTAT
2056 ATATATATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTAAATTTATTATTATT
Found at i:2060 original size:2 final size:2
Alignment explanation
Indices: 2045--2096 Score: 67
Period size: 2 Copynumber: 28.0 Consensus size: 2
2035 TATTTTAAAT
2045 TA TA T- TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
2084 TA T- TA TA TT TA TA
1 TA TA TA TA TA TA TA
2097 GTTATAGTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
1 4 0.09
2 40 0.91
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:2090 original size:10 final size:10
Alignment explanation
Indices: 2032--2114 Score: 62
Period size: 12 Copynumber: 7.7 Consensus size: 10
2022 TTAAATTTGT
*
2032 TATTATTTTA
1 TATTATATTA
*
2042 AATTATA-T-
1 TATTATATTA
2050 TATTATATATA
1 TATTATAT-TA
2061 TATATATATATA
1 TAT-TATAT-TA
2073 TATATATATTA
1 TAT-TATATTA
2084 TATTATATTTA
1 TATTATA-TTA
2095 TAGTTATAGTTA
1 TA-TTATA-TTA
2107 TAGTTATA
1 TA-TTATA
2115 ACCATTAATC
Statistics
Matches: 63, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
8 6 0.10
9 1 0.02
10 10 0.16
11 13 0.21
12 33 0.52
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (10 bp):
TATTATATTA
Found at i:2101 original size:6 final size:6
Alignment explanation
Indices: 2077--2114 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
2067 TATATATATA
*
2077 TATA-T TATA-T TATATT TATAGT TATAGT TATAGT TATA
1 TATAGT TATAGT TATAGT TATAGT TATAGT TATAGT TATA
2115 ACCATTAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 9 0.29
6 22 0.71
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (6 bp):
TATAGT
Found at i:2113 original size:18 final size:16
Alignment explanation
Indices: 2050--2114 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 16
2040 TAAATTATAT
2050 TATTATA-TATATATATA
1 TATTATAGT-TATAT-TA
2067 TATATATA-TATATATTA
1 TAT-TATAGT-TATATTA
*
2084 TATTATATTTATAGTTA
1 TATTATAGTTATA-TTA
2101 TAGTTATAGTTATA
1 TA-TTATAGTTATA
2115 ACCATTAATC
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
16 8 0.19
17 14 0.33
18 21 0.49
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.54
Consensus pattern (16 bp):
TATTATAGTTATATTA
Found at i:2502 original size:117 final size:117
Alignment explanation
Indices: 2326--2562 Score: 440
Period size: 117 Copynumber: 2.0 Consensus size: 117
2316 GTCACTATTC
*
2326 AATTGGGTGCAAAATAAACTAAATTAAATTAATGAAATATATTCCACTCTGATAGTGACACGTGT
1 AATTGGGTGCAAAATAAAATAAATTAAATTAATGAAATATATTCCACTCTGATAGTGACACGTGT
*
2391 CACAATTTAATTGGATGTTAAATTTATT-AATTAAAATTATGACTAAATTGA
66 CACAATTTAATTGGACGTTAAATTTATTAAATTAAAATTATGACTAAATTGA
2442 AATTGGGTGCAAAATAAAATAAATTAAAATTAATGAAATATATTCCACTCTGATAGTGACACGTG
1 AATTGGGTGCAAAATAAAATAAATT-AAATTAATGAAATATATTCCACTCTGATAGTGACACGTG
2507 TCACAATTTAATTGGACGTTAAATTTATTAAATTAAAATTATGACTAAATTGA
65 TCACAATTTAATTGGACGTTAAATTTATTAAATTAAAATTATGACTAAATTGA
2560 AAT
1 AAT
2563 AATGTACAAA
Statistics
Matches: 117, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
116 24 0.21
117 67 0.57
118 26 0.22
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (117 bp):
AATTGGGTGCAAAATAAAATAAATTAAATTAATGAAATATATTCCACTCTGATAGTGACACGTGT
CACAATTTAATTGGACGTTAAATTTATTAAATTAAAATTATGACTAAATTGA
Found at i:7518 original size:22 final size:22
Alignment explanation
Indices: 7493--7555 Score: 81
Period size: 26 Copynumber: 2.6 Consensus size: 22
7483 ATTAGCTATA
7493 CATATTAAACTAATGACTAAAT
1 CATATTAAACTAATGACTAAAT
7515 CATATTAAATAAACTAATGACTAAAT
1 CATA-T---TAAACTAATGACTAAAT
7541 CATATTAAACATAAT
1 CATATTAAAC-TAAT
7556 TTTAGTATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
22 9 0.25
23 5 0.14
25 1 0.03
26 21 0.58
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.32
Consensus pattern (22 bp):
CATATTAAACTAATGACTAAAT
Found at i:7527 original size:26 final size:26
Alignment explanation
Indices: 7498--7549 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7488 CTATACATAT
7498 TAAACTAATGACTAAATCATATTAAA
1 TAAACTAATGACTAAATCATATTAAA
7524 TAAACTAATGACTAAATCATATTAAA
1 TAAACTAATGACTAAATCATATTAAA
7550 CATAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.31
Consensus pattern (26 bp):
TAAACTAATGACTAAATCATATTAAA
Found at i:9974 original size:16 final size:16
Alignment explanation
Indices: 9949--9979 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9939 GTTTGGGCTT
9949 GTGTAAGATGTAAAGA
1 GTGTAAGATGTAAAGA
*
9965 GTGTATGATGTAAAG
1 GTGTAAGATGTAAAG
9980 GGACTCTAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (16 bp):
GTGTAAGATGTAAAGA
Found at i:10706 original size:41 final size:42
Alignment explanation
Indices: 10661--10740 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
10651 GGTCTTATGG
* *
10661 ATGACTCGAAGGACTT-ATCATCTTGCCCGAAAGACTTAAAA
1 ATGACTCGAAGGACTTCATCATCATGCACGAAAGACTTAAAA
* * *
10702 ATGACTTGAAGGATTTCATCATCATGCACGAAATACTTA
1 ATGACTCGAAGGACTTCATCATCATGCACGAAAGACTTA
10741 CTGATGGAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 14 0.42
42 19 0.58
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGACTCGAAGGACTTCATCATCATGCACGAAAGACTTAAAA
Found at i:10754 original size:13 final size:13
Alignment explanation
Indices: 10736--10761 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10726 TGCACGAAAT
10736 ACTTACTGATGGA
1 ACTTACTGATGGA
10749 ACTTACTGATGGA
1 ACTTACTGATGGA
10762 TTTGCTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
ACTTACTGATGGA
Found at i:10859 original size:36 final size:36
Alignment explanation
Indices: 10763--10860 Score: 151
Period size: 36 Copynumber: 2.7 Consensus size: 36
10753 ACTGATGGAT
* * *
10763 TTGCTTTATTACTCTTCCGTGAAGACTTAAGATTGA
1 TTGCTTCATTACTCTTCAGTGAAGGCTTAAGATTGA
*
10799 TTGCTTCATTACTCTTCGGTGAAGGCTTAAGATTGA
1 TTGCTTCATTACTCTTCAGTGAAGGCTTAAGATTGA
*
10835 TTGCTTCACTACTCTTCAGTGAAGGC
1 TTGCTTCATTACTCTTCAGTGAAGGC
10861 ATGGAAGGCC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.39
Consensus pattern (36 bp):
TTGCTTCATTACTCTTCAGTGAAGGCTTAAGATTGA
Found at i:10945 original size:42 final size:41
Alignment explanation
Indices: 10872--10965 Score: 100
Period size: 42 Copynumber: 2.3 Consensus size: 41
10862 TGGAAGGCCC
* *
10872 GAAGGACTTATCATCTTACTCAAAAGGCTTACAGATGACCT
1 GAAGGACTTATCATCATACTCAAAAGACTTACAGATGACCT
* * * * *
10913 GAAGGATTTAATCATCATGCTCGAAAGACTTACTGATG-GCT
1 GAAGGACTT-ATCATCATACTCAAAAGACTTACAGATGACCT
10954 CGAAGGACTTAT
1 -GAAGGACTTAT
10966 AAATTTTGGA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
41 12 0.28
42 31 0.72
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (41 bp):
GAAGGACTTATCATCATACTCAAAAGACTTACAGATGACCT
Found at i:11125 original size:41 final size:40
Alignment explanation
Indices: 11078--11171 Score: 100
Period size: 42 Copynumber: 2.3 Consensus size: 40
11068 TATGGATGGC
* *
11078 CTGAAGGACTTAGCATCTTGCTCGAAA-GTCTTACAGATGA
1 CTGAAGGACTTAGCATCATGCTC-AAATGACTTACAGATGA
** * *
11118 CTCGAAGGGTTTAAGCATCATGCTCAAATGACTTACTGATGT
1 CT-GAAGGACTT-AGCATCATGCTCAAATGACTTACAGATGA
11160 CTGAAGGACTTA
1 CTGAAGGACTTA
11172 TAAATTTTGG
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
40 3 0.07
41 17 0.40
42 23 0.53
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (40 bp):
CTGAAGGACTTAGCATCATGCTCAAATGACTTACAGATGA
Found at i:11376 original size:223 final size:226
Alignment explanation
Indices: 11021--11485 Score: 584
Period size: 223 Copynumber: 2.0 Consensus size: 226
11011 GAAAACATCG
** * * * *
11021 CTTTCTCATTTTTCAAATTCATGTGAAAACATCCTACCCGAATGTCTTATGGATGGCCTGAAGGA
1 CTTTCTCATTTTTCAAAGACATGTGAAAACATCCTACCCAAAGGTCTTATGGATGGCCCGAAGAA
* * * *
11086 CTTAGCATCTTGCTCGAAAGTCTTACAGATGACTCGAAGGGTTTAAGCATCATGCTCAAATGACT
66 CTTAGCATATTGCTCGAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCAAATGACT
* ** * ** * *
11151 TACTGAT-GTCTGAAGGACTTATAAATTTTGGAAATAGTTTACTAAGTAAGAAA-CTTTTTTACT
131 TACTGATGGCCCAAAGGACTTACAAATTTCAGAAATAATTTACTAAGTAAGAAACCTTTCTTA-T
11214 TTTC-AAA-TC-TTCAGATTTTAATGAGAAAT
195 TTTCAAAATTCATTCAGATTTTAATGAGAAAT
* *
11243 CTTTCTCATTTTTTAATAGACATGTGAAAACATCCTTCCCAAAGGTCTTATGGATGGCCCGAAGA
1 CTTTCTCATTTTTCAA-AGACATGTGAAAACATCCTACCCAAAGGTCTTATGGATGGCCCGAAGA
*
11308 ACTTATCATATTGCTCGAAAGGCTTACAGATGACCC-AGAGGATTTAAGCATCATGCTCGAAA-G
65 ACTTAGCATATTGCTCGAAAGGCTTACAGATGACCCGA-AGGATTTAAGCATCATGCTC-AAATG
** *
11371 ACTTACTGATGGCCCAAAGGACTTACCGATTTCAGAAATAATTTACTAGGTAAGAAACCTTTCTT
128 ACTTACTGATGGCCCAAAGGACTTACAAATTTCAGAAATAATTTACTAAGTAAGAAACCTTTCTT
11436 ATTTTCAAAATTCTCAAATTTCAGATTTTAATGAGAAAT
193 ATTTTCAAAA-T-TC--A-TTCAGATTTTAATGAGAAAT
11475 CTTTCTCATTT
1 CTTTCTCATTT
11486 CATTTCATAA
Statistics
Matches: 206, Mismatches: 24, Indels: 16
0.84 0.10 0.07
Matches are distributed among these distances:
222 16 0.08
223 103 0.50
224 44 0.21
225 10 0.05
228 2 0.01
232 31 0.15
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (226 bp):
CTTTCTCATTTTTCAAAGACATGTGAAAACATCCTACCCAAAGGTCTTATGGATGGCCCGAAGAA
CTTAGCATATTGCTCGAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCAAATGACT
TACTGATGGCCCAAAGGACTTACAAATTTCAGAAATAATTTACTAAGTAAGAAACCTTTCTTATT
TTCAAAATTCATTCAGATTTTAATGAGAAAT
Found at i:25104 original size:27 final size:26
Alignment explanation
Indices: 25073--25127 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
25063 TTATGAGATA
25073 ATTTTA-TATTTTAAGTAGCGTACTTTT
1 ATTTTACTATTTTAA-TA-CGTACTTTT
* *
25100 ATTTTACTTTTTTAATATGTACTTTT
1 ATTTTACTATTTTAATACGTACTTTT
25126 AT
1 AT
25128 AAAACATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.40
27 8 0.32
28 7 0.28
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.60
Consensus pattern (26 bp):
ATTTTACTATTTTAATACGTACTTTT
Found at i:28324 original size:21 final size:21
Alignment explanation
Indices: 28295--28341 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
28285 AATATGTAAA
28295 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
*
28316 TCGCGTTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
28337 TCGCA
1 TCGCA
28342 ACGCGAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:28347 original size:21 final size:21
Alignment explanation
Indices: 28230--28347 Score: 89
Period size: 20 Copynumber: 5.8 Consensus size: 21
28220 AAATGACCAA
*
28230 CAAATTCGCAACGCGA-ATTC
1 CAAATTCGCAACGCGATTTTC
* * *
28250 CAATTTCGCAAC-CCAGTTTC
1 CAAATTCGCAACGCGATTTTC
* * * *
28270 CAATTTCGCAACGCGAATATG
1 CAAATTCGCAACGCGATTTTC
* **
28291 TAAA-TCGCATTGCGATTTTC
1 CAAATTCGCAACGCGATTTTC
***
28311 CAAATTCGCGTTGCGATTTTC
1 CAAATTCGCAACGCGATTTTC
28332 CAAATTCGCAACGCGA
1 CAAATTCGCAACGCGA
28348 AAGTCAAATG
Statistics
Matches: 76, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
19 2 0.03
20 40 0.53
21 34 0.45
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (21 bp):
CAAATTCGCAACGCGATTTTC
Found at i:28509 original size:22 final size:22
Alignment explanation
Indices: 28484--28534 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
28474 CTACGGTGAC
28484 ATCCGTCCCCATCTCCGACAAA
1 ATCCGTCCCCATCTCCGACAAA
*
28506 ATCCGTCCCCATTTCCGACAAA
1 ATCCGTCCCCATCTCCGACAAA
28528 ATCCGTC
1 ATCCGTC
28535 TATCTCCATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.43, G:0.10, T:0.22
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCGACAAA
Found at i:28857 original size:20 final size:20
Alignment explanation
Indices: 28819--28857 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
28809 AATAAAATCA
* * *
28819 CGTTGCGATTTTCATTTTCG
1 CGTTGCGAATTTAAGTTTCG
28839 CGTTGCGAATTTAAGTTTC
1 CGTTGCGAATTTAAGTTTC
28858 AAAAACTTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.15, C:0.18, G:0.21, T:0.46
Consensus pattern (20 bp):
CGTTGCGAATTTAAGTTTCG
Found at i:30825 original size:4 final size:4
Alignment explanation
Indices: 30816--30853 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
30806 TTTTTCGGCA
*
30816 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TAAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
30854 TCAGTGACCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:32535 original size:61 final size:64
Alignment explanation
Indices: 32462--32602 Score: 164
Period size: 66 Copynumber: 2.2 Consensus size: 64
32452 TTTTACATTG
32462 AAAGTTGATTTGTTACAATTGATGAGGAAATAAG-A-T-TTATTTT-TTGATTAATTGATTTGTA
1 AAAGTTGATTTGTTA-AATTGATGAGGAAATAAGAATTATTATTTTCTTGATTAATTGATTTGTA
* * ** * * *
32523 AAAGCTGATTTGTTTAATTTGATTTGTAAATAAGAATTATTTTTTTGCTTGTTTAATTGATTTGT
1 AAAGTTGATTTG-TTAAATTGATGAGGAAATAAGAATTATTATTTT-CTTGATTAATTGATTTGT
32588 A
64 A
32589 AAAGTTGATTTGTT
1 AAAGTTGATTTGTT
32603 GTTTCTAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
61 25 0.38
62 4 0.06
63 1 0.02
64 6 0.09
65 2 0.03
66 28 0.42
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (64 bp):
AAAGTTGATTTGTTAAATTGATGAGGAAATAAGAATTATTATTTTCTTGATTAATTGATTTGTA
Found at i:32936 original size:39 final size:39
Alignment explanation
Indices: 32882--32965 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
32872 TCAAGTTGTA
*
32882 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
1 GATTTTAATTTCCTTTTGCTTGGCACCATATGAGATTTG
*
32921 GATTTTAATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTAATTTCCTTTTGCTTGGCACCATATGAGATTTG
32960 GATTTT
1 GATTTT
32966 GATGAGCATC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.18, C:0.15, G:0.19, T:0.48
Consensus pattern (39 bp):
GATTTTAATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:33255 original size:12 final size:12
Alignment explanation
Indices: 33240--33282 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
33230 AAATTTATAT
33240 TCAAATTCAAAC
1 TCAAATTCAAAC
* *
33252 TCAAATTGAAAT
1 TCAAATTCAAAC
*
33264 TTAAATTCAAAC
1 TCAAATTCAAAC
*
33276 TCCAATT
1 TCAAATT
33283 ACATATGAAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.33
Consensus pattern (12 bp):
TCAAATTCAAAC
Found at i:33812 original size:12 final size:12
Alignment explanation
Indices: 33795--33819 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33785 TCTTCGGGGA
33795 CTTTTTCTTCTT
1 CTTTTTCTTCTT
33807 CTTTTTCTTCTT
1 CTTTTTCTTCTT
33819 C
1 C
33820 AGGGTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:34021 original size:24 final size:24
Alignment explanation
Indices: 33994--34047 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
33984 CCATCACATA
*
33994 ATCAAAATCC-GAGTATTGATCAAG
1 ATCAAAATCCAG-GTATTGACCAAG
* *
34018 ATCAAAGTTCAGGTATTGACCAAG
1 ATCAAAATCCAGGTATTGACCAAG
34042 ATCAAA
1 ATCAAA
34048 TTTTGAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 25 0.96
25 1 0.04
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCAGGTATTGACCAAG
Found at i:34965 original size:19 final size:19
Alignment explanation
Indices: 34941--35009 Score: 77
Period size: 19 Copynumber: 3.6 Consensus size: 19
34931 ACTAAAACCT
*
34941 GTTGCGAAATTAAATTCGC
1 GTTGCGAATTTAAATTCGC
*
34960 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTT-AAATTCGC
* *
34979 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTAAAT-TCGC
34999 GTTGCGAATTT
1 GTTGCGAATTT
35010 GTAATATCGC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
18 2 0.05
19 23 0.55
20 17 0.40
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.36
Consensus pattern (19 bp):
GTTGCGAATTTAAATTCGC
Found at i:35109 original size:19 final size:18
Alignment explanation
Indices: 35057--35128 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 18
35047 ATTTACATAT
35057 TCGCGTTGCGAAATTGGAA
1 TCGCGTTGCG-AATTGGAA
* *
35076 ACTG-GTTGCAAAATTGGAA
1 TC-GCGTTGC-GAATTGGAA
*
35095 TTCGCGTTGCGAATTTGAGA
1 -TCGCGTTGCGAATTGGA-A
*
35115 TCGAGTTGCGAATT
1 TCGCGTTGCGAATT
35129 TGTTGGTCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
19 34 0.81
20 8 0.19
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (18 bp):
TCGCGTTGCGAATTGGAA
Found at i:45487 original size:31 final size:31
Alignment explanation
Indices: 45452--45554 Score: 206
Period size: 31 Copynumber: 3.3 Consensus size: 31
45442 TATGTATTAA
45452 TACTTAAACTATCAATTTTGATATATTTTAG
1 TACTTAAACTATCAATTTTGATATATTTTAG
45483 TACTTAAACTATCAATTTTGATATATTTTAG
1 TACTTAAACTATCAATTTTGATATATTTTAG
45514 TACTTAAACTATCAATTTTGATATATTTTAG
1 TACTTAAACTATCAATTTTGATATATTTTAG
45545 TACTTAAACT
1 TACTTAAACT
45555 TTCCTTTTTT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.48
Consensus pattern (31 bp):
TACTTAAACTATCAATTTTGATATATTTTAG
Found at i:48320 original size:29 final size:30
Alignment explanation
Indices: 48263--48327 Score: 105
Period size: 29 Copynumber: 2.2 Consensus size: 30
48253 ATTTGGATAT
*
48263 GAATTTAATCAAAATTTCAGTTTAGTCCTC
1 GAATTTAATCAAAATTTCAATTTAGTCCTC
*
48293 GAATTTAGTCAAAA-TTCAATTTAGTCCTC
1 GAATTTAATCAAAATTTCAATTTAGTCCTC
48322 GAATTT
1 GAATTT
48328 TTTTCTGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 20 0.61
30 13 0.39
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (30 bp):
GAATTTAATCAAAATTTCAATTTAGTCCTC
Found at i:49967 original size:17 final size:18
Alignment explanation
Indices: 49923--49976 Score: 74
Period size: 19 Copynumber: 3.0 Consensus size: 18
49913 AAATCAATTT
49923 AAATATAATAAAAATATTA
1 AAATATAATAAAAATA-TA
*
49942 AAATATAATAAAAATA-G
1 AAATATAATAAAAATATA
*
49959 AATTATAATAAAAATATA
1 AAATATAATAAAAATATA
49977 TTCTATATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.48
19 16 0.52
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
AAATATAATAAAAATATA
Found at i:50582 original size:25 final size:26
Alignment explanation
Indices: 50542--50593 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
50532 TGGTTTGTTC
*
50542 AAAAGAAGAAAAAAATAAAATGAAAT
1 AAAAGAAGAAAAAAATAAAATAAAAT
50568 AAAAG-AGAAAAAAATAAAATAAAAT
1 AAAAGAAGAAAAAAATAAAATAAAAT
50593 A
1 A
50594 GAAAAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.12
Consensus pattern (26 bp):
AAAAGAAGAAAAAAATAAAATAAAAT
Found at i:50601 original size:19 final size:20
Alignment explanation
Indices: 50558--50600 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
50548 AGAAAAAAAT
*
50558 AAAATGAAATAAAAGAGAAA
1 AAAATAAAATAAAAGAGAAA
*
50578 AAAATAAAATAAAATAGAAA
1 AAAATAAAATAAAAGAGAAA
50598 AAA
1 AAA
50601 TTACCTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (20 bp):
AAAATAAAATAAAAGAGAAA
Found at i:53122 original size:134 final size:133
Alignment explanation
Indices: 52777--53150 Score: 321
Period size: 135 Copynumber: 2.8 Consensus size: 133
52767 GTCCAATACC
* * * * * *
52777 TTTCTTCATGAAGTTAAAATTCGACTCAACAACCTTGACTATAAAATAGCTCC---TCATTGTTA
1 TTTCATCATGAAGTTGAAATTTGACTAAAAAACATTGACTA-AAAATAGCTCCATGTCATTG---
* * * * * * ** **
52839 AGTTAATCTAAATTTACTGACGACTCCTTCATTGAGATTTATGTCGAT-TTTGGGTGTTTTTTAG
62 AGTTAAGCTAAA-TTGCAGACGACTCCTCCATTGCGAGTTAAATTAATATTT-GGTGTTTTTTAG
52903 CCTAATATA
125 CCTAATATA
* * * * * *
52912 TTTCATCGTGAAGTTGAAATTTGACTAAAAAACCTTGACTTGAAAATATCTCCTTGTTATTGAGT
1 TTTCATCATGAAGTTGAAATTTGACTAAAAAACATTGAC-TAAAAATAGCTCCATGTCATTGAGT
* * *
52977 TATGCTAAATTGCATACGACTCTTCCATTGCGAGTTAAATTAATATTTGGTGTTCTTTTAGTCC-
65 TAAGCTAAATTGCAGACGACTCCTCCATTGCGAGTTAAATTAATATTTGGTGTT-TTTTAG-CCT
*
53041 AATATC
128 AATATA
*
53047 TTTTATCATGAAGTTGAAATTTGACT-AAAAACATTGGA-TAAAGAATAGCTCCATGTCATTGAG
1 TTTCATCATGAAGTTGAAATTTGACTAAAAAACATT-GACTAAA-AATAGCTCCATGTCATTGAG
* ** *
53110 TTAAGGTAAATTGTGGATGACTCCTCCATTGCGAGTTAAAT
64 TTAAGCTAAATTGCAGACGACTCCTCCATTGCGAGTTAAAT
53151 CGAATCTAAA
Statistics
Matches: 193, Mismatches: 37, Indels: 19
0.78 0.15 0.08
Matches are distributed among these distances:
133 3 0.02
134 89 0.46
135 93 0.48
136 3 0.02
138 5 0.03
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (133 bp):
TTTCATCATGAAGTTGAAATTTGACTAAAAAACATTGACTAAAAATAGCTCCATGTCATTGAGTT
AAGCTAAATTGCAGACGACTCCTCCATTGCGAGTTAAATTAATATTTGGTGTTTTTTAGCCTAAT
ATA
Found at i:53731 original size:36 final size:37
Alignment explanation
Indices: 53493--53775 Score: 146
Period size: 38 Copynumber: 7.8 Consensus size: 37
53483 TTTTCAAGAT
* *
53493 AAACTATCTCTAGTGAGATAAAAATTTTGTTTTGAGAA
1 AAACTATCTCAAGTGAGAT-AAAATTTTGTTTTGAGGA
* * ** * * *
53531 AAAATGTCTCAAGTGAGA-CGATTTTTTTTTTCA-GA
1 AAACTATCTCAAGTGAGATAAAATTTTGTTTTGAGGA
* * * * * *
53566 AAACTATATCAAATGTGATAAAATCATTATTTTGA-TA
1 AAACTATCTCAAGTGAGATAAAAT-TTTGTTTTGAGGA
* **
53603 AAA-TAATTTCAAGTGAGACT--AATTTT-TTTAAAGGA
1 AAACT-ATCTCAAGTGAGA-TAAAATTTTGTTTTGAGGA
* *
53638 AAACTATCTCAAGTGAG-----ATTTTATTTCGAGAGA
1 AAACTATCTCAAGTGAGATAAAATTTTGTTTTGAG-GA
* * *
53671 AAATTATCTCCAA-TGTGATGAAA-TTTGTTTT-ATGGA
1 AAACTATCT-CAAGTGAGATAAAATTTTGTTTTGA-GGA
*
53707 AAACTATCTCAAGTGAGATAAAATTTTTGTTTTGAGGG
1 AAACTATCTCAAGTGAGATAAAA-TTTTGTTTTGAGGA
* * *
53745 AAACTATATCGAGTGCGATAAAATTTTGTTT
1 AAACTATCTCAAGTGAGATAAAATTTTGTTT
53776 CAAGAGAAAC
Statistics
Matches: 184, Mismatches: 42, Indels: 39
0.69 0.16 0.15
Matches are distributed among these distances:
31 5 0.03
32 5 0.03
33 13 0.07
34 7 0.04
35 34 0.18
36 36 0.20
37 36 0.20
38 47 0.26
39 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (37 bp):
AAACTATCTCAAGTGAGATAAAATTTTGTTTTGAGGA
Found at i:53785 original size:37 final size:38
Alignment explanation
Indices: 53707--53785 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
53697 GTTTTATGGA
* ** *
53707 AAACTATCTCAAGTGAGATAAAATTTTTGTTTTGAGGG
1 AAACTATATCAAGTGAGATAAAATTTTTGTTTCAAGAG
* *
53745 AAACTATATCGAGTGCGATAAAA-TTTTGTTTCAAGAG
1 AAACTATATCAAGTGAGATAAAATTTTTGTTTCAAGAG
53782 AAAC
1 AAAC
53786 CATCTTAAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
37 15 0.43
38 20 0.57
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (38 bp):
AAACTATATCAAGTGAGATAAAATTTTTGTTTCAAGAG
Found at i:56725 original size:21 final size:22
Alignment explanation
Indices: 56696--56736 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
56686 TTGCAGAATA
56696 CAAAGATGCAAAGATACAAACG
1 CAAAGATGCAAAGATACAAACG
*
56718 CAAA-ATGCAAAGATGCAAA
1 CAAAGATGCAAAGATACAAA
56737 TGCATGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.56, C:0.17, G:0.17, T:0.10
Consensus pattern (22 bp):
CAAAGATGCAAAGATACAAACG
Found at i:58514 original size:25 final size:25
Alignment explanation
Indices: 58486--58535 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
58476 TAATAAAAAA
58486 GAAC-AAATTACAAGAAA-TTAAAATT
1 GAACAAAATT-CAA-AAACTTAAAATT
58511 GAACAAAATTCAAAAACTTAAAATT
1 GAACAAAATTCAAAAACTTAAAATT
58536 TTAAAGAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 3 0.13
25 15 0.65
26 5 0.22
ACGTcount: A:0.60, C:0.10, G:0.06, T:0.24
Consensus pattern (25 bp):
GAACAAAATTCAAAAACTTAAAATT
Found at i:60161 original size:16 final size:17
Alignment explanation
Indices: 60123--60161 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
60113 CAAATTACAA
*
60123 CTCTTTGGGTGATTTTT
1 CTCTTTGGATGATTTTT
*
60140 CACTTTGGATGATTTTT
1 CTCTTTGGATGATTTTT
60157 -TCTTT
1 CTCTTT
60162 CCATTTTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.10, C:0.13, G:0.18, T:0.59
Consensus pattern (17 bp):
CTCTTTGGATGATTTTT
Found at i:63845 original size:17 final size:15
Alignment explanation
Indices: 63806--63847 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
63796 TGTCTAGTGA
63806 ATCTTTGTT-GTTTT
1 ATCTTTGTTGGTTTT
*
63820 ATATTTGTTGAGTTTT
1 ATCTTTGTTG-GTTTT
63836 CATCTTTGTTGG
1 -ATCTTTGTTGG
63848 GTCCATCTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 8 0.35
16 6 0.26
17 9 0.39
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.62
Consensus pattern (15 bp):
ATCTTTGTTGGTTTT
Found at i:67675 original size:29 final size:30
Alignment explanation
Indices: 67631--67687 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
67621 AACATAATAG
* *
67631 GACAAAAGGGAATCAAGTTAGTAAAAATCA
1 GACAAAAGAGAATCAAGTCAGTAAAAATCA
*
67661 GACAAAA-AGAATCAAGTCAGTTAAAAT
1 GACAAAAGAGAATCAAGTCAGTAAAAAT
67688 GATTATTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.54, C:0.11, G:0.18, T:0.18
Consensus pattern (30 bp):
GACAAAAGAGAATCAAGTCAGTAAAAATCA
Found at i:69514 original size:4 final size:4
Alignment explanation
Indices: 69505--70719 Score: 2318
Period size: 4 Copynumber: 307.8 Consensus size: 4
69495 CAAAATAAGG
69505 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69553 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69601 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69649 TATC TATC TATC TATC TA-- TATC TATC TA-- TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69693 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69741 TA-- TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69787 TA-- TATC TATC TATC TATC TATC TATC TATC --TC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69831 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69879 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69927 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
69975 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70023 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70071 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70119 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70167 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70215 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70263 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70311 TATC TATC TATC TATC TATC TATC TA-- TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70357 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70405 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70453 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70501 TATC TATC TATC TATC TATC TATC TATC TATC TATC TA-- TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70547 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TA-- TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70593 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70641 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
70689 TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TAT
70720 TTATAAAATA
Statistics
Matches: 1195, Mismatches: 0, Indels: 32
0.97 0.00 0.03
Matches are distributed among these distances:
2 16 0.01
4 1179 0.99
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
TATC
Found at i:71475 original size:21 final size:21
Alignment explanation
Indices: 71433--71475 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
71423 TTTTCGGGCT
* * *
71433 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
71454 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
71475 A
1 A
71476 CGAATATGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:71527 original size:20 final size:20
Alignment explanation
Indices: 71502--71539 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
71492 GAATGCTAGA
*
71502 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
71522 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
71540 TGAGAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:72201 original size:149 final size:150
Alignment explanation
Indices: 72012--72327 Score: 537
Period size: 150 Copynumber: 2.1 Consensus size: 150
72002 GGGTAGAGGG
* * * *
72012 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAGGT-CTTGAAAGACACA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCCTAGAAAGACACA
* *
72076 TACTTGATCCTTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
*
72141 ATATGGCACTACGGTGGAAT
131 ATATGGCACTACGGTGCAAT
*
72161 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCCTAGAAAGACACA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCCTAGAAAGACACA
72226 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
72291 ATATGGCACTACGGTGCAAT
131 ATATGGCACTACGGTGCAAT
72311 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
72328 TGCAATTATA
Statistics
Matches: 157, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
149 48 0.31
150 109 0.69
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (150 bp):
TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTGTGAAGTCCTAGAAAGACACA
TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTATATGTGGTCCTTATGGACATCATT
ATATGGCACTACGGTGCAAT
Found at i:72328 original size:23 final size:23
Alignment explanation
Indices: 72295--72339 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
72285 ATCATTATAT
*
72295 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
*
72318 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
72340 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:73341 original size:104 final size:104
Alignment explanation
Indices: 73161--73368 Score: 416
Period size: 104 Copynumber: 2.0 Consensus size: 104
73151 AACACCCCGG
73161 ACAAATCGAGCATCTACAGTAATCATCTCATACTATTAAAAAACATTTGTAAAAGATTGGGTTCA
1 ACAAATCGAGCATCTACAGTAATCATCTCATACTATTAAAAAACATTTGTAAAAGATTGGGTTCA
73226 AATAGGTGAATCTATATAATATAGGTGTCGCAACAATCC
66 AATAGGTGAATCTATATAATATAGGTGTCGCAACAATCC
73265 ACAAATCGAGCATCTACAGTAATCATCTCATACTATTAAAAAACATTTGTAAAAGATTGGGTTCA
1 ACAAATCGAGCATCTACAGTAATCATCTCATACTATTAAAAAACATTTGTAAAAGATTGGGTTCA
73330 AATAGGTGAATCTATATAATATAGGTGTCGCAACAATCC
66 AATAGGTGAATCTATATAATATAGGTGTCGCAACAATCC
73369 TTCGAGTGGC
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 104 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.29
Consensus pattern (104 bp):
ACAAATCGAGCATCTACAGTAATCATCTCATACTATTAAAAAACATTTGTAAAAGATTGGGTTCA
AATAGGTGAATCTATATAATATAGGTGTCGCAACAATCC
Found at i:73919 original size:22 final size:21
Alignment explanation
Indices: 73894--73941 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
73884 AAGAAAGAAA
*
73894 GAAAACTCAAACT-CAACATTAG
1 GAAAACT-AAAATGCAA-ATTAG
*
73916 GAAAAGTAAAATGCAAATTAG
1 GAAAACTAAAATGCAAATTAG
73937 GAAAA
1 GAAAA
73942 TAGGTGGCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.56, C:0.12, G:0.15, T:0.17
Consensus pattern (21 bp):
GAAAACTAAAATGCAAATTAG
Found at i:76855 original size:132 final size:132
Alignment explanation
Indices: 76618--76863 Score: 332
Period size: 132 Copynumber: 1.9 Consensus size: 132
76608 AACTCTCCAT
* * * * * * *
76618 TGAAAATGTTGATCCACCTCCTTTTGTGATGTAATCGAACGAGATGTCGGTGCTGATCTACCTCA
1 TGAAAATGTCGATCCACCTCATTCTATGATGGAATCGAACGAGATATCGGTACTGATCTACCTCA
* * **
76683 TTCTATGATAGAATTGAACAAAAAGTTGATGTTGATCCAACTCCTTATGTGTTGGATTTGAGTGA
66 TTCTATGACAGAATCGAACAAAAAGTTGATACTGATCCAACTCCTTATGTGTTGGATTTGAGTGA
76748 AA
131 AA
* *
76750 TGAAAATGTCGATCCACCTCATTCTATGATGGAATCGAATGAGATATCGGTACTGATCTACCTCC
1 TGAAAATGTCGATCCACCTCATTCTATGATGGAATCGAACGAGATATCGGTACTGATCTACCTCA
* * *
76815 TTCTGTGACATAATCGAGC-AAAAGTTTGATACTGATCCAACTCCTTATG
66 TTCTATGACAGAATCGAACAAAAAG-TTGATACTGATCCAACTCCTTATG
76864 CGCTGGATGA
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
131 5 0.05
132 92 0.95
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (132 bp):
TGAAAATGTCGATCCACCTCATTCTATGATGGAATCGAACGAGATATCGGTACTGATCTACCTCA
TTCTATGACAGAATCGAACAAAAAGTTGATACTGATCCAACTCCTTATGTGTTGGATTTGAGTGA
AA
Found at i:79160 original size:18 final size:18
Alignment explanation
Indices: 79122--79168 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
79112 AAACATAATG
*
79122 AAAATAATAAAAACAAGA
1 AAAAAAATAAAAACAAGA
*
79140 AAAAAAATAAAAAC-AGT
1 AAAAAAATAAAAACAAGA
*
79157 AAAAAAACAAAA
1 AAAAAAATAAAA
79169 TAAAATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.81, C:0.06, G:0.04, T:0.09
Consensus pattern (18 bp):
AAAAAAATAAAAACAAGA
Found at i:79177 original size:18 final size:18
Alignment explanation
Indices: 79122--79193 Score: 53
Period size: 18 Copynumber: 4.1 Consensus size: 18
79112 AAACATAATG
*
79122 AAAATAATAAAAACAAGAA-
1 AAAA-AATAAAAATAA-AAT
* *
79141 AAAAAAT-AAAA-ACAGT
1 AAAAAATAAAAATAAAAT
79157 AAAAAA-ACAAAATAAAAT
1 AAAAAATA-AAAATAAAAT
*
79175 AAAAAATAGAAATAAAAT
1 AAAAAATAAAAATAAAAT
79193 A
1 A
79194 TAAGGACCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
15 1 0.02
16 7 0.16
17 8 0.19
18 22 0.51
19 5 0.12
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.12
Consensus pattern (18 bp):
AAAAAATAAAAATAAAAT
Found at i:79187 original size:13 final size:12
Alignment explanation
Indices: 79139--79196 Score: 55
Period size: 13 Copynumber: 4.6 Consensus size: 12
79129 TAAAAACAAG
79139 AAAA-AAAATAA
1 AAAATAAAATAA
*
79150 AAACAGTAAAAAAA
1 AAA-A-TAAAATAA
79164 CAAAATAAAATAA
1 -AAAATAAAATAA
79177 AAAATAGAAATAA
1 AAAATA-AAATAA
*
79190 AATATAA
1 AAAATAA
79197 GGACCAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
11 3 0.08
12 8 0.21
13 18 0.46
14 7 0.18
15 3 0.08
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.14
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:79390 original size:50 final size:50
Alignment explanation
Indices: 79308--79411 Score: 122
Period size: 51 Copynumber: 2.1 Consensus size: 50
79298 AAATAAAATA
* *
79308 AAATAAAAATGACTAAAATGTAAGAAAATAAAAGT-TAGTAACTAAATCAG
1 AAATAAAAATGACCAAAATGCAAGAAAATAAAA-TATAGTAACTAAATCAG
* * *
79358 AAATAAACAGTGACCAAAATGCAA-AAATTAAAATAATAGTAGCTAAATCAG
1 AAATAAA-AATGACCAAAATGCAAGAAAATAAAAT-ATAGTAACTAAATCAG
79409 AAA
1 AAA
79412 CTAACATTGA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
49 1 0.02
50 15 0.33
51 30 0.65
ACGTcount: A:0.60, C:0.09, G:0.12, T:0.20
Consensus pattern (50 bp):
AAATAAAAATGACCAAAATGCAAGAAAATAAAATATAGTAACTAAATCAG
Found at i:81680 original size:20 final size:21
Alignment explanation
Indices: 81650--81691 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
81640 TCGAATACAA
81650 AATGAGTATCGATACTACTAC
1 AATGAGTATCGATACTACTAC
81671 AATG-GTATCGATACTACTAC
1 AATGAGTATCGATACTACTAC
81691 A
1 A
81692 GTAATATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (21 bp):
AATGAGTATCGATACTACTAC
Found at i:81699 original size:20 final size:20
Alignment explanation
Indices: 81656--81699 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
81646 ACAAAATGAG
**
81656 TATCGATACTACTACAATGG
1 TATCGATACTACTACAATAA
*
81676 TATCGATACTACTACAGTAA
1 TATCGATACTACTACAATAA
81696 TATC
1 TATC
81700 AAGCCCAACG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.32
Consensus pattern (20 bp):
TATCGATACTACTACAATAA
Found at i:82106 original size:33 final size:33
Alignment explanation
Indices: 82059--82122 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
82049 AAGGGGTTTT
*
82059 GGTTCTAGCTTAG-CC-TGATAAAAGCTAGGGAAA
1 GGTTATAGCTTAGCCCGTGA-AAAA-CTAGGGAAA
*
82092 GGTTATAGTTTAGCCCGTGAAAAACTAGGGA
1 GGTTATAGCTTAGCCCGTGAAAAACTAGGGA
82123 GTTTGTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 18 0.67
34 6 0.22
35 3 0.11
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (33 bp):
GGTTATAGCTTAGCCCGTGAAAAACTAGGGAAA
Found at i:84202 original size:20 final size:20
Alignment explanation
Indices: 84177--84229 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
84167 AGTACTATAT
84177 TGTATGAACAATACCGATAC
1 TGTATGAACAATACCGATAC
* * * *
84197 TGTATGAATAGTACTGATAT
1 TGTATGAACAATACCGATAC
*
84217 TGTGTGAACAATA
1 TGTATGAACAATA
84230 ATGCACAGTA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (20 bp):
TGTATGAACAATACCGATAC
Found at i:85609 original size:36 final size:36
Alignment explanation
Indices: 85569--85755 Score: 166
Period size: 36 Copynumber: 5.1 Consensus size: 36
85559 CGAATTAGAC
* *
85569 AAAATTTGTTTTAAGATAAACTATCTCTAGTGAGAT
1 AAAATTTGTTTTAAGAAAAACTATCTCAAGTGAGAT
** * *
85605 AAAATTTTTGTTTGGAGAAAAATTATCTCAAGTGAGAC
1 AAAA--TTTGTTTTAAGAAAAACTATCTCAAGTGAGAT
* *
85643 AAAATTTATTTTAA-AAAAACTATCTCAAATGAGAT
1 AAAATTTGTTTTAAGAAAAACTATCTCAAGTGAGAT
* *
85678 CAAATCGTTGTTTTGAG-AAAA-TAATCTCAAGTGAGACT
1 AAAAT--TTGTTTTAAGAAAAACT-ATCTCAAGTGAGA-T
* * * *
85716 -AAATTTGTTTTTATAAAAACTCTCTCAAGTGAGAC
1 AAAATTTGTTTTAAGAAAAACTATCTCAAGTGAGAT
85751 AAAAT
1 AAAAT
85756 CAGTGTTTCA
Statistics
Matches: 121, Mismatches: 20, Indels: 20
0.75 0.12 0.12
Matches are distributed among these distances:
35 30 0.25
36 32 0.26
37 28 0.23
38 31 0.26
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (36 bp):
AAAATTTGTTTTAAGAAAAACTATCTCAAGTGAGAT
Found at i:85632 original size:38 final size:37
Alignment explanation
Indices: 85590--85755 Score: 128
Period size: 37 Copynumber: 4.5 Consensus size: 37
85580 TAAGATAAAC
*
85590 TATCTCTAGTGAGATAAAATTTTTGTTTGGAGAAAAAT
1 TATCTCAAGTGAGATAAAATTTTTGTTT-GAGAAAAAT
* * * *
85628 TATCTCAAGTGAGACAAAATTTAT-TTT-AAAAAAAC
1 TATCTCAAGTGAGATAAAATTTTTGTTTGAGAAAAAT
* * **
85663 TATCTCAAATGAGATCAAATCGTTGTTTTGAG-AAAAT
1 TATCTCAAGTGAGATAAAATTTTTG-TTTGAGAAAAAT
* * *
85700 AATCTCAAGTGAGACT-AAATTTGTT-TTT-ATAAAAAC
1 TATCTCAAGTGAGA-TAAAATTT-TTGTTTGAGAAAAAT
* *
85736 TCTCTCAAGTGAGACAAAAT
1 TATCTCAAGTGAGATAAAAT
85756 CAGTGTTTCA
Statistics
Matches: 99, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
35 25 0.25
36 23 0.23
37 26 0.26
38 25 0.25
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (37 bp):
TATCTCAAGTGAGATAAAATTTTTGTTTGAGAAAAAT
Found at i:85756 original size:73 final size:74
Alignment explanation
Indices: 85565--85756 Score: 230
Period size: 73 Copynumber: 2.6 Consensus size: 74
85555 GCCTCGAATT
* * * ** *
85565 AGACAAAATTTG-TTTTAAGATAAACTATCTCTAGTGAGATAAAATTTTTGTTTGGAGAAAAATT
1 AGACAAAATTTGTTTTTAA-AAAAACTATCTCAAGTGAGACAAAATCGTTGTTTGGAGAAAAATA
85629 ATCTCAAGTG
65 ATCTCAAGTG
* * *
85639 AGACAAAATTT-ATTTTAAAAAAACTATCTCAAATGAGATC-AAATCGTTGTTTTGAG-AAAATA
1 AGACAAAATTTGTTTTTAAAAAAACTATCTCAAGTGAGA-CAAAATCGTTGTTTGGAGAAAAATA
85701 ATCTCAAGTG
65 ATCTCAAGTG
* * *
85711 AGACTAAATTTGTTTTTATAAAAACTCTCTCAAGTGAGACAAAATC
1 AGACAAAATTTGTTTTTAAAAAAACTATCTCAAGTGAGACAAAATC
85757 AGTGTTTCAA
Statistics
Matches: 101, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
72 26 0.26
73 58 0.57
74 17 0.17
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.34
Consensus pattern (74 bp):
AGACAAAATTTGTTTTTAAAAAAACTATCTCAAGTGAGACAAAATCGTTGTTTGGAGAAAAATAA
TCTCAAGTG
Found at i:86212 original size:37 final size:38
Alignment explanation
Indices: 86134--86212 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
86124 ATTTTATGGA
* * ** *
86134 AAACTATCTCAAGTGAGATAAACTTTTTGTTTTGAGGG
1 AAACTATATCAAGTGAGATAAACATTTTGTTTCAAGAG
86172 AAACTATATCAAGTGAGATAAA-ATTTTGTTTCAAGAG
1 AAACTATATCAAGTGAGATAAACATTTTGTTTCAAGAG
86209 AAAC
1 AAAC
86213 CATCTTTAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
37 15 0.42
38 21 0.58
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (38 bp):
AAACTATATCAAGTGAGATAAACATTTTGTTTCAAGAG
Found at i:91724 original size:163 final size:163
Alignment explanation
Indices: 91422--91822 Score: 536
Period size: 163 Copynumber: 2.5 Consensus size: 163
91412 TCTGAGCTCT
* * * ** *
91422 AAGTTCTTCTCATTATGAAGTCTTC-ACTCTTCTGTTCGGACGAGTTCTTCTTATTATGAACCCT
1 AAGTTCTTCTCATTATGAA--CTTCTTCTCCT-TATTCGGATAAGTTCTTCTCATTATGAACCCT
** *
91486 TCCATT-GAAATATTGATCCACATTCTTCTATGATGAAATAAAAAAAAATGTTGACGTTGACCTA
63 TCCATTGGAAATATTGATCCACATTCTGATATGATGAAATAAAAAAAAATGTTGACGCTGACCTA
* *
91550 CCTCCTTCTATGATAGAATCAAACAAAATGGTGAAC
128 CCTCATTCTATGATAGAATCAAACAAAAGGGTGAAC
*
91586 AAGTTCTTCTCATTATGAACTTCTTCTCCTTATTCGGATAAGTTCTTCTCATTATGAACCCCTCC
1 AAGTTCTTCTCATTATGAACTTCTTCTCCTTATTCGGATAAGTTCTTCTCATTATGAACCCTTCC
* * * * ** * * *
91651 ATTGGAAATGTTGATCCATATTCTGATGTGATGGAATTGAACATAATGTTGACGCTGATCTACCT
66 ATTGGAAATATTGATCCACATTCTGATATGATGAAATAAAAAAAAATGTTGACGCTGACCTACCT
91716 CATTCTATGATAGAATCAAACAAAAGGGTGAAC
131 CATTCTATGATAGAATCAAACAAAAGGGTGAAC
* * * *
91749 AAGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGATAAGTTCTTTTCATTATAAACCCTTCC
1 AAGTTCTTCTCATTATGAACTTCTTCTCCTTATTCGGATAAGTTCTTCTCATTATGAACCCTTCC
91814 ATTGGAAAT
66 ATTGGAAAT
91823 TACGATTCAC
Statistics
Matches: 209, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
162 37 0.18
163 153 0.73
164 19 0.09
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (163 bp):
AAGTTCTTCTCATTATGAACTTCTTCTCCTTATTCGGATAAGTTCTTCTCATTATGAACCCTTCC
ATTGGAAATATTGATCCACATTCTGATATGATGAAATAAAAAAAAATGTTGACGCTGACCTACCT
CATTCTATGATAGAATCAAACAAAAGGGTGAAC
Found at i:92315 original size:19 final size:19
Alignment explanation
Indices: 92291--92327 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
92281 TTCTTTTGGT
92291 TTCTTTCAATTTTTTATTA
1 TTCTTTCAATTTTTTATTA
* *
92310 TTCTTTTATTTTTTTATT
1 TTCTTTCAATTTTTTATT
92328 TTAAATCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (19 bp):
TTCTTTCAATTTTTTATTA
Found at i:94017 original size:71 final size:71
Alignment explanation
Indices: 93897--94101 Score: 250
Period size: 71 Copynumber: 2.9 Consensus size: 71
93887 TAAATATAAA
* * * * **
93897 TGTGTCGAACTTCAACTAGA-TATGACTGCTAGCTGATTCATTAAATGTTTCTTTTATCATGGAC
1 TGTGTCCAACTTCAACTGGACT-TGACTGCTAGCTGATTTACTATTTGTTTCTTTTATCATGGAC
93961 CATTAAC
65 CATTAAC
* * *
93968 TGTGTCCAACTTCAACTGGACTTGACTACTAGCTGATTTACTATTTGTTTCTTTTAACATGGAGC
1 TGTGTCCAACTTCAACTGGACTTGACTGCTAGCTGATTTACTATTTGTTTCTTTTATCATGGACC
94033 ATTAAC
66 ATTAAC
* * ** * * *
94039 TATGTCTAACTTCAGTTGGACTTAACTGCTTGCTGATTTACTATTTGTTTATTTTATCATGGA
1 TGTGTCCAACTTCAACTGGACTTGACTGCTAGCTGATTTACTATTTGTTTCTTTTATCATGGA
94102 GCATACCGAT
Statistics
Matches: 115, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
71 114 0.99
72 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (71 bp):
TGTGTCCAACTTCAACTGGACTTGACTGCTAGCTGATTTACTATTTGTTTCTTTTATCATGGACC
ATTAAC
Found at i:98743 original size:15 final size:15
Alignment explanation
Indices: 98723--98756 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
98713 AATTATACCA
*
98723 ATTATTAATTGTAAC
1 ATTATTAACTGTAAC
*
98738 ATTATTAACTGTCAC
1 ATTATTAACTGTAAC
98753 ATTA
1 ATTA
98757 GTACTTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (15 bp):
ATTATTAACTGTAAC
Done.