Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007597.1 Hibiscus syriacus cultivar Beakdansim tig00021946_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 240653
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
File 1 of 2
Found at i:10284 original size:19 final size:19
Alignment explanation
Indices: 10248--10286 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
10238 AAATCGGTTT
10248 AACCGATTTAACCAGTCTG
1 AACCGATTTAACCAGTCTG
* * *
10267 AACCGGTTTGACCGGTCTG
1 AACCGATTTAACCAGTCTG
10286 A
1 A
10287 CCTGCCCATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (19 bp):
AACCGATTTAACCAGTCTG
Found at i:10325 original size:17 final size:17
Alignment explanation
Indices: 10303--10340 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
10293 CATCTGACCC
* *
10303 GACCCGACTCGATTGTT
1 GACCCGACCCGATCGTT
10320 GACCCGACCCGATCGTT
1 GACCCGACCCGATCGTT
10337 GACC
1 GACC
10341 GTTGACTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.37, G:0.24, T:0.21
Consensus pattern (17 bp):
GACCCGACCCGATCGTT
Found at i:12057 original size:45 final size:45
Alignment explanation
Indices: 12007--12128 Score: 131
Period size: 44 Copynumber: 2.7 Consensus size: 45
11997 AACGTTACAC
* * *
12007 ATTTTCATTACTGACACCTTTTATACCGATAATACACCATCATGCT
1 ATTTTCATTAGTGGCACCTTTTATGCCGATAATACACCATCATG-T
* * * * * * *
12053 -TTTTCACTAGTGGCA-TTTTTAGGTCGATAATGCACCGTTATGT
1 ATTTTCATTAGTGGCACCTTTTATGCCGATAATACACCATCATGT
12096 ATTTTCATTAGTGGCACCTTTTATGCCGATAAT
1 ATTTTCATTAGTGGCACCTTTTATGCCGATAAT
12129 GAACCCTTAT
Statistics
Matches: 60, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
43 1 0.02
44 34 0.57
45 25 0.42
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.40
Consensus pattern (45 bp):
ATTTTCATTAGTGGCACCTTTTATGCCGATAATACACCATCATGT
Found at i:12139 original size:45 final size:45
Alignment explanation
Indices: 12007--12144 Score: 129
Period size: 45 Copynumber: 3.1 Consensus size: 45
11997 AACGTTACAC
* * * *
12007 ATTTTCATTACTGACACCTTTTATACCGATAAT-ACACCATCATGCT
1 ATTTTCATTAGTGGCACCTTTTATGCCGATAATGA-ACCATTATG-T
* * * * * *
12053 -TTTTCACTAGTGGCA-TTTTTAGGTCGATAATGCACCGTTATGT
1 ATTTTCATTAGTGGCACCTTTTATGCCGATAATGAACCATTATGT
* *
12096 ATTTTCATTAGTGGCACCTTTTATGCCGATAATGAACCCTTATGC
1 ATTTTCATTAGTGGCACCTTTTATGCCGATAATGAACCATTATGT
12141 ATTT
1 ATTT
12145 AACTTGCATT
Statistics
Matches: 72, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
43 1 0.01
44 33 0.46
45 38 0.53
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (45 bp):
ATTTTCATTAGTGGCACCTTTTATGCCGATAATGAACCATTATGT
Found at i:12245 original size:49 final size:49
Alignment explanation
Indices: 12101--12590 Score: 536
Period size: 49 Copynumber: 9.8 Consensus size: 49
12091 TATGTATTTT
* * * * *
12101 CATTAGTGGCACCTTTTATGCCGATAATGAACCCTTATGCATTTAACTTG
1 CATTAGTGGCACC-TTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* * * * * *
12151 CATTACTGGCACTTTTCAGCAAAAAAATACA-CATTTAAGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGC-CAAAAATGCACCA-TTATGCATTTAACTTG
* *
12201 TATTAGTGGCACCTCTCTGCCAAAAATGCACCATTATGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* * * ** *
12250 CATTAGTGGCACCCTTCTTCCAAAAATACACTTTTAAGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* * * *
12299 CATTAGTGGCACATTTCTACCAAAAATGCACCATTATGTATTTAACTAG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* *
12348 CATTAGTGGCACCTTTTTGCCAAAAATGCACCATTATGCATTTAGCTTG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* *
12397 CATTAGTGGCACCTTTATGCCAAAAATGTACCATTATGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* * ** *
12446 CATTAGTTGCACCTTTCTGCAAAAAAAAAAT-CACTTTTAAGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGC----CAAAAATGCACCATTATGCATTTAACTTG
*
12498 CATTAATGGCACCTTTCTGCCAAAAAAAAATGCACCATTATGCATTTAACTT-
1 CATTAGTGGCACCTTTCTGCC----AAAAATGCACCATTATGCATTTAACTTG
* *
12550 CAATTAGTTGCACTTTTCTGCCAAAAATGCACCATTATGCA
1 C-ATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCA
12591 ACTTTCATTA
Statistics
Matches: 366, Mismatches: 61, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
49 236 0.64
50 48 0.13
52 42 0.11
53 40 0.11
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.33
Consensus pattern (49 bp):
CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
Found at i:15945 original size:19 final size:20
Alignment explanation
Indices: 15903--15968 Score: 75
Period size: 19 Copynumber: 3.5 Consensus size: 20
15893 AGCTGGGAAA
*
15903 AACCAGTTTAACCGGTTCTG
1 AACCGGTTTAACCGGTTCTG
15923 -ACCGGTTTAACCGGTTC-G
1 AACCGGTTTAACCGGTTCTG
* * *
15941 AACCGTTTTGACTGG-TCTG
1 AACCGGTTTAACCGGTTCTG
15960 AACCGGTTT
1 AACCGGTTT
15969 GACTGGTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
18 3 0.08
19 36 0.92
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (20 bp):
AACCGGTTTAACCGGTTCTG
Found at i:15945 original size:29 final size:29
Alignment explanation
Indices: 15912--15967 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
15902 AAACCAGTTT
*
15912 AACCGGTTCTGACCGGT-TTAACCGGTTCG
1 AACC-GTTCTGACCGGTCTGAACCGGTTCG
* *
15941 AACCGTTTTGACTGGTCTGAACCGGTT
1 AACCGTTCTGACCGGTCTGAACCGGTT
15968 TGACTGGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.18, C:0.25, G:0.27, T:0.30
Consensus pattern (29 bp):
AACCGTTCTGACCGGTCTGAACCGGTTCG
Found at i:15969 original size:19 final size:19
Alignment explanation
Indices: 15919--15975 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
15909 TTTAACCGGT
* *
15919 TCTG-ACCGGTTTAACCGG
1 TCTGAACCGGTTTGACTGG
*
15937 T-TCGAACCGTTTTGACTGG
1 TCT-GAACCGGTTTGACTGG
15956 TCTGAACCGGTTTGACTGG
1 TCTGAACCGGTTTGACTGG
15975 T
1 T
15976 ATGACCCGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
17 1 0.03
18 2 0.06
19 28 0.88
20 1 0.03
ACGTcount: A:0.16, C:0.23, G:0.28, T:0.33
Consensus pattern (19 bp):
TCTGAACCGGTTTGACTGG
Found at i:16000 original size:14 final size:14
Alignment explanation
Indices: 15977--16018 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
15967 TTGACTGGTA
*
15977 TGACCCGACCCGTC
1 TGACCCGACCCGAC
*
15991 TGACCTGACCCGAC
1 TGACCCGACCCGAC
16005 TGACCCGACCCGAC
1 TGACCCGACCCGAC
16019 CGTTGACCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.19, C:0.48, G:0.21, T:0.12
Consensus pattern (14 bp):
TGACCCGACCCGAC
Found at i:19385 original size:19 final size:19
Alignment explanation
Indices: 19363--19448 Score: 74
Period size: 19 Copynumber: 4.6 Consensus size: 19
19353 CCAGTTTAAC
19363 CGGTTCTGACCGGTTTGAT
1 CGGTTCTGACCGGTTTGAT
** *
19382 CGGTTCAAACCGGTTTGAC
1 CGGTTCTGACCGGTTTGAT
19401 CGGTTC-GAACCGGTTTGA-
1 CGGTTCTG-ACCGGTTTGAT
19419 CTGG-TCTGAACCGGTTTG-T
1 C-GGTTCTG-ACCGGTTTGAT
19438 CCGG-TCTGACC
1 -CGGTTCTGACC
19449 CGACCCGTCT
Statistics
Matches: 58, Mismatches: 4, Indels: 11
0.79 0.05 0.15
Matches are distributed among these distances:
18 6 0.10
19 51 0.88
20 1 0.02
ACGTcount: A:0.14, C:0.26, G:0.30, T:0.30
Consensus pattern (19 bp):
CGGTTCTGACCGGTTTGAT
Found at i:19402 original size:9 final size:9
Alignment explanation
Indices: 19356--19448 Score: 69
Period size: 9 Copynumber: 9.9 Consensus size: 9
19346 GGAAAAACCA
*
19356 GTTTAACCG
1 GTTTGACCG
19365 GTTCTGACCG
1 GTT-TGACCG
*
19375 GTTTGATCG
1 GTTTGACCG
**
19384 GTTCAAACCG
1 GTT-TGACCG
19394 GTTTGACCG
1 GTTTGACCG
*
19403 GTTCGAACCG
1 GTTTG-ACCG
*
19413 GTTTGACTG
1 GTTTGACCG
*
19422 GTCTGAACCG
1 GTTTG-ACCG
*
19432 GTTTGTCCG
1 GTTTGACCG
*
19441 GTCTGACC
1 GTTTGACC
19449 CGACCCGTCT
Statistics
Matches: 64, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
9 35 0.55
10 29 0.45
ACGTcount: A:0.15, C:0.25, G:0.29, T:0.31
Consensus pattern (9 bp):
GTTTGACCG
Found at i:19403 original size:38 final size:38
Alignment explanation
Indices: 19350--19448 Score: 107
Period size: 38 Copynumber: 2.6 Consensus size: 38
19340 CAGCTGGGAA
* *
19350 AAACCAGTTTAACCGGTTCTGACCGGTTTGA-TCGGT-T
1 AAACCGGTTTGACCGGTTCTGACCGGTTTGACT-GGTCT
19387 CAAACCGGTTTGACCGGTTC-GAACCGGTTTGACTGGTCT
1 -AAACCGGTTTGACCGGTTCTG-ACCGGTTTGACTGGTCT
* *
19426 GAACCGGTTTGTCCGG-TCTGACC
1 AAACCGGTTTGACCGGTTCTGACC
19449 CGACCCGTCT
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
37 6 0.11
38 45 0.85
39 2 0.04
ACGTcount: A:0.18, C:0.25, G:0.27, T:0.29
Consensus pattern (38 bp):
AAACCGGTTTGACCGGTTCTGACCGGTTTGACTGGTCT
Found at i:19484 original size:14 final size:14
Alignment explanation
Indices: 19443--19485 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
19433 TTTGTCCGGT
*
19443 CTGACCCGACCCGT
1 CTGACCCGACCCGA
*
19457 CTGACCTGACCCGA
1 CTGACCCGACCCGA
19471 CTGACCCGACCCGA
1 CTGACCCGACCCGA
19485 C
1 C
19486 CGTTGACCGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.19, C:0.49, G:0.21, T:0.12
Consensus pattern (14 bp):
CTGACCCGACCCGA
Found at i:21291 original size:45 final size:45
Alignment explanation
Indices: 21127--21298 Score: 170
Period size: 45 Copynumber: 3.8 Consensus size: 45
21117 GTGTTACATA
* ** *
21127 TGGCACCTTTTATGCCTATAATGCAA-CGTTACACATTTTCATTAC
1 TGGCACCTTTTATGCCGATAATG-AACCGTTATGCATTTTCATTAG
* * * * *
21172 TGACACCTTTTATACCGATAAT-ACACCATTATGCTTTTTCACTAG
1 TGGCACCTTTTATGCCGATAATGA-ACCGTTATGCATTTTCATTAG
* * * * * *
21217 TGGCA-TTTTTAGGTCGATAATGCATCGTTATGTATTTTCATTAG
1 TGGCACCTTTTATGCCGATAATGAACCGTTATGCATTTTCATTAG
21261 TGGCACCTTTTATGCCGATAATGAACCGTTATGCATTT
1 TGGCACCTTTTATGCCGATAATGAACCGTTATGCATTT
21299 AACTTGCAGT
Statistics
Matches: 97, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
43 1 0.01
44 34 0.35
45 62 0.64
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.40
Consensus pattern (45 bp):
TGGCACCTTTTATGCCGATAATGAACCGTTATGCATTTTCATTAG
Found at i:21401 original size:49 final size:49
Alignment explanation
Indices: 21255--21746 Score: 513
Period size: 49 Copynumber: 9.8 Consensus size: 49
21245 TATGTATTTT
* * * * *
21255 CATTAGTGGCACCTTTTATGCCGATAATGAACCGTTATGCATTTAACTTG
1 CATTAGTGGCACC-TTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* * * * * * *
21305 CAGTACTGGCACTTTTCAGCAAAAAAAAATACA-CATTTAAGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGC---CAAAAATGCACCA-TTATGCATTTAACTTG
* *
21357 TATTAGTGGCACCTCTCTGCCAAAAATGCACCATTATGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* * * ** *
21406 CATTAGTGGCACCCTTCTTCCAAAAATACACTTTTAAGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* * * * *
21455 CATTAGTGGCACATTTCTACCAAAAATGCATCATTATGTATTTAACTAG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* *
21504 CATTAGTGGCACCTTTTTGCCAAAAATGCACCATTATGCATTTAGCTTG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* *
21553 CATTAGTGGCACCTTTATGCCAAAAATGTACCATTATGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
* ** *
21602 CATTAGTGGCACCTTTCTGCAAAAAAAAAAT-CACTTTTAAGCATTTAACTTG
1 CATTAGTGGCACCTTTCTGC----CAAAAATGCACCATTATGCATTTAACTTG
*
21654 CATTAATGGCACCTTTCTGCCAAAAAAAAATGCACCATTATGCATTTAACTT-
1 CATTAGTGGCACCTTTCTGCC----AAAAATGCACCATTATGCATTTAACTTG
* *
21706 CAATTAGTTGCACTTTTCTGCCAAAAATGCACCATTATGCA
1 C-ATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCA
21747 ACTTTCATTA
Statistics
Matches: 364, Mismatches: 63, Indels: 31
0.79 0.14 0.07
Matches are distributed among these distances:
49 234 0.64
50 12 0.03
51 1 0.00
52 77 0.21
53 40 0.11
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (49 bp):
CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTG
Found at i:22046 original size:27 final size:27
Alignment explanation
Indices: 21986--22051 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 27
21976 TATACTTGTA
*
21986 AATCTCAATAAAAACTCATATTTCAAC
1 AATCTCAATAAAAACCCATATTTCAAC
* **
22013 -ATATCAATAAAAACCCCAT-TTTCTTC
1 AATCTCAATAAAAA-CCCATATTTCAAC
22039 AATCTCAAATAAA
1 AATCTC-AATAAA
22052 TCATTCATCG
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
26 17 0.55
27 8 0.26
28 6 0.19
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (27 bp):
AATCTCAATAAAAACCCATATTTCAAC
Found at i:29944 original size:27 final size:27
Alignment explanation
Indices: 29875--29947 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
29865 TGTTATATGA
*
29875 AGGTTTATGGGACATCCAAGGTAATGC
1 AGGTTTATGGGACATTCAAGGTAATGC
* *
29902 CGGTTTATGGGACATTCAAGGTAATTC
1 AGGTTTATGGGACATTCAAGGTAATGC
29929 AGGTTTATGGGACATTCAA
1 AGGTTTATGGGACATTCAA
29948 AGTCAGGCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (27 bp):
AGGTTTATGGGACATTCAAGGTAATGC
Found at i:32441 original size:3 final size:3
Alignment explanation
Indices: 32433--32465 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32423 TTCACTATCG
32433 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32466 ATACAACAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:34188 original size:2 final size:2
Alignment explanation
Indices: 34181--34208 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
34171 AGGGTTTGAA
34181 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34209 TATGATCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36254 original size:29 final size:29
Alignment explanation
Indices: 36215--36407 Score: 221
Period size: 29 Copynumber: 6.7 Consensus size: 29
36205 TCCACATTCG
*
36215 AAAATTCCCAAAATGTCACCTTTTTCA-A
1 AAAATTCCCAGAATGTCACCTTTTTCACA
*
36243 AATAATTCCCA-AATTGTCACATTTTTCACA
1 AA-AATTCCCAGAA-TGTCACCTTTTTCACA
*
36273 AAAA-TCCCAGAATGTCACTTTTTTCACAA
1 AAAATTCCCAGAATGTCACCTTTTTCAC-A
* * *
36302 AAAATTCTCAGAATGTCAACTTTTTCATA
1 AAAATTCCCAGAATGTCACCTTTTTCACA
**
36331 AAAATTCCCAGAATGTCATATTTTTCACA
1 AAAATTCCCAGAATGTCACCTTTTTCACA
* * * *
36360 AAAAATCCCATAATATTACCTTTTTCACA
1 AAAATTCCCAGAATGTCACCTTTTTCACA
*
36389 AAAATTCCCTGAATGTCAC
1 AAAATTCCCAGAATGTCAC
36408 TGGGTCGGGT
Statistics
Matches: 138, Mismatches: 21, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
28 23 0.17
29 93 0.67
30 22 0.16
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (29 bp):
AAAATTCCCAGAATGTCACCTTTTTCACA
Found at i:36361 original size:87 final size:87
Alignment explanation
Indices: 36215--36406 Score: 255
Period size: 87 Copynumber: 2.2 Consensus size: 87
36205 TCCACATTCG
* *
36215 AAAATTCCCAAAATGTCACCTTTTTCAAAATAATTCCCAAATTGTCACATTTTTCAC-AAAAATC
1 AAAATTCCCAGAATGTCAACTTTTTCAAAATAATTCCCAAATTGTCACATTTTTCACAAAAAATC
* *
36279 CCAGAATGTCACTTTTTTCACAA
66 CCAGAATATCACCTTTTTCAC-A
* *
36302 AAAATTCTCAGAATGTCAACTTTTTCATAAA-AATTCCCAGAA-TGTCATATTTTTCACAAAAAA
1 AAAATTCCCAGAATGTCAACTTTTTCA-AAATAATTCCCA-AATTGTCACATTTTTCACAAAAAA
* *
36365 TCCCATAATATTACCTTTTTCACA
64 TCCCAGAATATCACCTTTTTCACA
*
36389 AAAATTCCCTGAATGTCA
1 AAAATTCCCAGAATGTCA
36407 CTGGGTCGGG
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
87 63 0.68
88 29 0.32
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (87 bp):
AAAATTCCCAGAATGTCAACTTTTTCAAAATAATTCCCAAATTGTCACATTTTTCACAAAAAATC
CCAGAATATCACCTTTTTCACA
Found at i:52265 original size:32 final size:32
Alignment explanation
Indices: 52229--52349 Score: 145
Period size: 32 Copynumber: 3.8 Consensus size: 32
52219 TAAGGTGACA
* *
52229 CTTGGGTAGGCTCTGAGGCCCCAAGGTATTTC
1 CTTGGGTAGGCTCTAAGGCCCCAAGGTATTCC
* *
52261 CTTGGGTAGGCTCTAAGGCCCTAAGGAATTCC
1 CTTGGGTAGGCTCTAAGGCCCCAAGGTATTCC
* ** *
52293 CTTGGGTAGGCTCTTAGGCCCCAAGGTACACA
1 CTTGGGTAGGCTCTAAGGCCCCAAGGTATTCC
*
52325 ATTGGGTAGGCTCTCAA-GCCCCAAG
1 CTTGGGTAGGCTCT-AAGGCCCCAAG
52350 ATAATCCTTA
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
32 75 0.99
33 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (32 bp):
CTTGGGTAGGCTCTAAGGCCCCAAGGTATTCC
Found at i:58833 original size:99 final size:99
Alignment explanation
Indices: 58699--58896 Score: 292
Period size: 99 Copynumber: 2.0 Consensus size: 99
58689 ATTCTATAAT
* *
58699 AAGTATACCAAAGTATCTTATCTATTATTACTCAATCTGTGCAAAGAAA-AAGAAT-TTTTTCAG
1 AAGTATACCAAAGTATCTTATCTATTATGACTCAATCTGTGCAAA-AAAGAAGAATATTGTT-AG
58762 TATTCGTCCCAATTTTGGAAGTTACCCCGCGAGTAA
64 TATTCGTCCCAATTTTGGAAGTTACCCCGCGAGTAA
* * * ** *
58798 AAGTATACCAAAGTATCTTATCTTTTATGATTCAATCTTTGCAAAAAAGGGGAATATTGTTATTA
1 AAGTATACCAAAGTATCTTATCTATTATGACTCAATCTGTGCAAAAAAGAAGAATATTGTTAGTA
58863 TTCGTCCCAATTTTGGAAGTTACCCCGCGAGTAA
66 TTCGTCCCAATTTTGGAAGTTACCCCGCGAGTAA
58897 TGTAGGAGAT
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
98 3 0.03
99 82 0.92
100 4 0.04
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (99 bp):
AAGTATACCAAAGTATCTTATCTATTATGACTCAATCTGTGCAAAAAAGAAGAATATTGTTAGTA
TTCGTCCCAATTTTGGAAGTTACCCCGCGAGTAA
Found at i:68979 original size:19 final size:17
Alignment explanation
Indices: 68935--68981 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
68925 ACAATTAATA
68935 TTTATTATTATTTTCCCT
1 TTTATT-TTATTTTCCCT
*
68953 TTTA-TTTATTTTCTCTGT
1 TTTATTTTATTTTC-C-CT
68971 TTTATTTTATT
1 TTTATTTTATT
68982 AAATCTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 8 0.32
17 2 0.08
18 9 0.36
19 6 0.24
ACGTcount: A:0.15, C:0.11, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTATTTTATTTTCCCT
Found at i:69938 original size:19 final size:19
Alignment explanation
Indices: 69914--69962 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
69904 TTCTGGGCAA
69914 GATGCATCGATGCATAGGT
1 GATGCATCGATGCATAGGT
69933 GATGCATCGATGCATAGGT
1 GATGCATCGATGCATAGGT
69952 GATGCATCGAT
1 GATGCATCGAT
69963 ACACCCTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (19 bp):
GATGCATCGATGCATAGGT
Found at i:70020 original size:19 final size:18
Alignment explanation
Indices: 69996--70071 Score: 89
Period size: 19 Copynumber: 4.0 Consensus size: 18
69986 GAATACAATA
*
69996 AGTGCATCGATGCATAGG
1 AGTGCATCGATGCATAAG
*
70014 CAGTGCATCGATGCATATG
1 -AGTGCATCGATGCATAAG
70033 TAGTGCATCGATGCACTATAG
1 -AGTGCATCGATGCA-TA-AG
*
70054 AATGCATCGATGCATAAG
1 AGTGCATCGATGCATAAG
70072 GGCCAAAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
18 2 0.04
19 33 0.65
20 15 0.29
21 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (18 bp):
AGTGCATCGATGCATAAG
Found at i:70069 original size:39 final size:38
Alignment explanation
Indices: 69996--70069 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 38
69986 GAATACAATA
* *
69996 AGTGCATCGATGCATAGGCAGTGCATCGATGCATATGT
1 AGTGCATCGATGCATAAGCAATGCATCGATGCATATGT
70034 AGTGCATCGATGCACTATAG-AATGCATCGATGCATA
1 AGTGCATCGATGCA-TA-AGCAATGCATCGATGCATA
70070 AGGGCCAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
38 14 0.44
39 17 0.53
40 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (38 bp):
AGTGCATCGATGCATAAGCAATGCATCGATGCATATGT
Found at i:70557 original size:117 final size:117
Alignment explanation
Indices: 70390--71187 Score: 926
Period size: 117 Copynumber: 6.8 Consensus size: 117
70380 TTACTAAATG
* *
70390 GCACTATA-TGTGC-AAAACTGATAAGGAAATCATACT-AAGTATATGTATTTCCATAT-GGAGC
1 GCACTA-AGTGTGCTAAAA-TGTTAAGGAAATCATACTGAA-TATATGGATTTCCATATAGG-GC
* *
70451 ACTGA-ATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGAATTTCCATATGGA
62 A-TTATATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCCATATGGA
* * * *
70507 ACACTAAGTGTTCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAGGGCATTA
1 GCACTAAGTGTGCTAAAATGTTAAGGAAATCATACTGAATATATGGATTTCCATATAGGGCATTA
* * * *
70572 TATGTGCTAAAATGGTAAGGGAATCATACTAAATGTATGTATTTCCATATGGA
66 TATGTGCTAAAATGATAA-GAAATCATACTAAGTGTATGGATTTCCATATGGA
* * * *
70625 GCACTGAA-TGTGCTAAAACGATAA-GAAATCATACT-AAGTGTATGGATTTCAATAT-GGAGCA
1 GCACT-AAGTGTGCTAAAATGTTAAGGAAATCATACTGAA-TATATGGATTTCCATATAGG-GCA
* * * * *
70686 CTA-AGTGTGCTAAAATGTTAAGGAAATCATATTGAA-TATATGGATTTCCAAATAGG-
63 TTATA-TGTGCTAAAATGATAA-GAAATCATACT-AAGTGTATGGATTTCCATAT-GGA
* * * * * *
70742 GCATTATA-TGTGCTAAAATGGTAAGGGAATCATACT-AAGTGTATGTATTTTCATAT-GGAGCA
1 GCACTA-AGTGTGCTAAAATGTTAAGGAAATCATACTGAA-TATATGGATTTCCATATAGG-GCA
* *
70804 CTGA-ATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGA
63 -TTATATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCCATATGGA
* *
70859 GCACTAAGTGTGCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAGGGCATTA
1 GCACTAAGTGTGCTAAAATGTTAAGGAAATCATACTGAATATATGGATTTCCATATAGGGCATTA
* *
70924 TATGTGCTAAAACGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGA
66 TATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCCATATGGA
* * * *
70976 GCACTAAGTTTGCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAGGGGATTA
1 GCACTAAGTGTGCTAAAATGTTAAGGAAATCATACTGAATATATGGATTTCCATATAGGGCATTA
* *
71041 TATGTGCTAAAACGATAAGAAATCATACTAAGTGTATGGGTTTCCATATGGA
66 TATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCCATATGGA
* *
71093 GCACTAAGTGTGCTAAAACGTTAAGGAAATCATAATGAATATATGGATTTCCATATAGGGCATTA
1 GCACTAAGTGTGCTAAAATGTTAAGGAAATCATACTGAATATATGGATTTCCATATAGGGCATTA
* *
71158 TATGTGCTAAAAATGGTAAAAGAATCATAC
66 TATGTGCT-AAAATGATAAGA-AATCATAC
71188 AAATGGTATG
Statistics
Matches: 596, Mismatches: 62, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
116 16 0.03
117 447 0.75
118 121 0.20
119 12 0.02
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.31
Consensus pattern (117 bp):
GCACTAAGTGTGCTAAAATGTTAAGGAAATCATACTGAATATATGGATTTCCATATAGGGCATTA
TATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCCATATGGA
Found at i:70690 original size:176 final size:176
Alignment explanation
Indices: 70389--71245 Score: 1037
Period size: 176 Copynumber: 4.9 Consensus size: 176
70379 ATTACTAAAT
* *
70389 GGCACTATATGTGC-AAAACTGATAAGGAAATCATACTAAGTATATGTATTTCCATATGGAGCAC
1 GGCATTATATGTGCTAAAA-TGATAAGGAAATCATACTAAGTGTATGTATTTCCATATGGAGCAC
* * *
70453 TGAATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGAATTTCCATATGGAACACTAAGTGT
65 TGAATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGAGCACTAAGTGT
*
70518 TCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAG
130 GCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAG
* * *
70565 GGCATTATATGTGCTAAAATGGTAAGGGAATCATACTAAATGTATGTATTTCCATATGGAGCACT
1 GGCATTATATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGTATTTCCATATGGAGCACT
*
70630 GAATGTGCTAAAACGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGAGCACTAAGTGTG
66 GAATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGAGCACTAAGTGTG
70695 CTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAG
131 CTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAG
* * *
70741 GGCATTATATGTGCTAAAATGGTAAGGGAATCATACTAAGTGTATGTATTTTCATATGGAGCACT
1 GGCATTATATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGTATTTCCATATGGAGCACT
70806 GAATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGAGCACTAAGTGTG
66 GAATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGAGCACTAAGTGTG
70871 CTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAG
131 CTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAG
* * *
70917 GGCATTATATGTGCTAAAACGATAA-GAAATCATACTAAGTGTATGGATTTCAATATGGAGCACT
1 GGCATTATATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGTATTTCCATATGGAGCACT
* * * * * *
70981 -AAGTTTGCTAAAATGTTAAGGAAATCATATTGAA-TATATGGATTTCCAA-ATAGG-GGATTAT
66 GAA-TGTGCTAAAATGATAA-GAAATCATACT-AAGTGTATGGATTT-CAATAT-GGAGCACTA-
* * * * * *
71042 A-TGTGCTAAAACGATAA-GAAATCATACT-AAGTGTATGGGTTTCCATAT-G
125 AGTGTGCTAAAATGTTAAGGAAATCATATTGAA-TATATGGATTTCCAAATAG
* * * * * *
71091 GAGCACTA-AGTGTGCTAAAACGTTAAGGAAATCATAATGAA-TATATGGATTTCCATATAGG-G
1 G-GCATTATA-TGTGCTAAAATGATAAGGAAATCATACT-AAGTGTATGTATTTCCATAT-GGAG
* * * * * *
71153 CA-TTATATGTGCTAAAAATGGTAAAAGAATCATAC-AAATGGTATGAATTCTTGAATA-GG-GC
62 CACTGA-ATGTGCT-AAAATGATAAGA-AATCATACTAAGT-GTATGGA-T-TTCAATATGGAGC
** **
71214 ACTTTGTGTGCTAAAATGAGAAGGAAATCATA
121 ACTAAGTGTGCTAAAATGTTAAGGAAATCATA
71246 ATAAGTATAT
Statistics
Matches: 608, Mismatches: 49, Indels: 46
0.86 0.07 0.07
Matches are distributed among these distances:
174 7 0.01
175 96 0.16
176 433 0.71
177 57 0.09
178 12 0.02
179 3 0.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.31
Consensus pattern (176 bp):
GGCATTATATGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGTATTTCCATATGGAGCACT
GAATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGAGCACTAAGTGTG
CTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAG
Found at i:70938 original size:293 final size:293
Alignment explanation
Indices: 70390--71176 Score: 1078
Period size: 293 Copynumber: 2.7 Consensus size: 293
70380 TTACTAAATG
* * * *
70390 GCACTATA-TGTGC-AAAACTGATAAGGAAATCATACT-AAGTATATGTATTTCCATAT-GGAGC
1 GCACTA-AGTGTGCTAAAA-TGTTAAGGAAATCATATTGAA-TATATGGATTTCCAAATAGG-GC
* *
70451 ACTGA-ATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGAATTTCCATATGGAACACTAAG
62 A-TTATATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGAATTTCCATATGGAGCACTAAG
* *
70515 TGTTCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAA-ATAGGGCATTATATGTGC
126 TGTGCTAAAATGTTAAGGAAATCATAATGAATATATGGATTT-CAATATAGGGCATTATATGTGC
* * * *
70579 TAAAATGGTAAGGGAATCATACTAAATGTATGTATTTCCATATGGAGCACTGAATGTGCTAAAAC
190 TAAAATGGTAAGGAAATCATACTAAATATATGGATTTCCAAATGGAGCACTGAATGTGCTAAAAC
70644 GATAAGAAATCATACTAAGTGTATGGATTTCAATATGGA
255 GATAAGAAATCATACTAAGTGTATGGATTTCAATATGGA
70683 GCACTAAGTGTGCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAGGGCATTA
1 GCACTAAGTGTGCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAGGGCATTA
* * * *
70748 TATGTGCTAAAATGGTAAGGGAATCATACTAAGTGTATGTATTTTCATATGGAGCACTGAA-TGT
66 TATGTGCTAAAATGATAA-GAAATCATACTAAGTGTATGAATTTCCATATGGAGCACT-AAGTGT
* * * *
70812 GCTAAAATGATAA-GAAATCATACT-AAGTGTATGGATTTCAATAT-GGAGCACTA-AGTGTGCT
129 GCTAAAATGTTAAGGAAATCATAATGAA-TATATGGATTTCAATATAGG-GCATTATA-TGTGCT
* * * *
70873 AAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAGG-GCA-TTATATGTGCTAAAA
191 AAAATGGTAAGGAAATCATACTAAATATATGGATTTCCAAAT-GGAGCACTGA-ATGTGCTAAAA
70936 CGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGA
254 CGATAAGAAATCATACTAAGTGTATGGATTTCAATATGGA
* *
70976 GCACTAAGTTTGCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAGGGGATTA
1 GCACTAAGTGTGCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAGGGCATTA
* **
71041 TATGTGCTAAAACGATAAGAAATCATACTAAGTGTATGGGTTTCCATATGGAGCACTAAGTGTGC
66 TATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGAATTTCCATATGGAGCACTAAGTGTGC
* *
71106 TAAAACGTTAAGGAAATCATAATGAATATATGGATTTCCATATAGGGCATTATATGTGCTAAAAA
131 TAAAATGTTAAGGAAATCATAATGAATATATGGATTTCAATATAGGGCATTATATGTGCT-AAAA
71171 TGGTAA
195 TGGTAA
71177 AAGAATCATA
Statistics
Matches: 437, Mismatches: 38, Indels: 37
0.85 0.07 0.07
Matches are distributed among these distances:
291 2 0.00
292 62 0.14
293 298 0.68
294 73 0.17
295 2 0.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.31
Consensus pattern (293 bp):
GCACTAAGTGTGCTAAAATGTTAAGGAAATCATATTGAATATATGGATTTCCAAATAGGGCATTA
TATGTGCTAAAATGATAAGAAATCATACTAAGTGTATGAATTTCCATATGGAGCACTAAGTGTGC
TAAAATGTTAAGGAAATCATAATGAATATATGGATTTCAATATAGGGCATTATATGTGCTAAAAT
GGTAAGGAAATCATACTAAATATATGGATTTCCAAATGGAGCACTGAATGTGCTAAAACGATAAG
AAATCATACTAAGTGTATGGATTTCAATATGGA
Found at i:71486 original size:43 final size:43
Alignment explanation
Indices: 71365--72969 Score: 2392
Period size: 43 Copynumber: 37.0 Consensus size: 43
71355 ACATATATAT
*
71365 AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTCT-GAAA
1 AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
*
71408 TAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAT
1 -AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
*
71453 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTAT-GAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* *
71495 TAATGATAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAT
1 -AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
* * *
71540 AATGGTAAGTAGATTGTAAAATAAGCTTACGTGCTTATGAAAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATG-GAAA
* * *
71584 AACGATAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGG-AAA
*
71628 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* *
71671 AATAGTAAGTATATTAGTAAAATAAGCTTACGAGCTTATGGAAT
1 AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
*
71715 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
71758 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
71801 AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTAT-GAAA
1 AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
71844 TAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAA
1 -AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
* *
71889 AATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* * * * ** *
71932 AATTGTAAGTAGAATGTAAAATAAGCTTACGAGTTTATTTAAT
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
*
71975 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* *
72018 AATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
72061 AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAA
1 AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
* *
72105 AATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* * * * *
72148 AATTGTAAGTAGAATGTAAAATAAGCTTACGAGCTTATGTAAT
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
*
72191 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* *
72234 AATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
72277 AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTAT-GAAA
1 AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
72320 TAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAA
1 -AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
* *
72365 AATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* * * * ** *
72408 AATTGTAAGTAGAATGTAAAATAAGCTTACGAGTTTATTTAAT
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
*
72451 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* *
72494 AATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
72537 AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAA
1 AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
* *
72581 AATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* * * * *
72624 AATTGTAAGTAGAATGTAAAATAAGCTTACGAGCTTATGTAAT
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
*
72667 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* *
72710 AATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
72753 AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTAT-GAAA
1 AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
72796 TAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAA
1 -AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAA
* *
72841 AATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAA
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
* * * * * *
72884 AATGGTAAGTAGAATGTAAAATAAGCTTACGAACTTATAGTAT
1 AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
72927 AATGGTAAGTATATTGATAAAATAAGCTTACGAGCTTATGGAA
1 AATGGTAAGTATATTG-TAAAATAAGCTTACGAGCTTATGGAA
72970 TATTGATAAA
Statistics
Matches: 1434, Mismatches: 108, Indels: 38
0.91 0.07 0.02
Matches are distributed among these distances:
42 3 0.00
43 870 0.61
44 543 0.38
45 18 0.01
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (43 bp):
AATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAA
Found at i:71496 original size:21 final size:21
Alignment explanation
Indices: 71428--71497 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
71418 TATATTGGTA
71428 AAATAAGCTTACGAGCTTATG
1 AAATAAGCTTACGAGCTTATG
* * * * * *
71449 GAATAATG-GTAAGTAGATTGTA
1 AAATAA-GCTTACG-AGCTTATG
71471 AAATAAGCTTACGAGCTTATG
1 AAATAAGCTTACGAGCTTATG
71492 AAATAA
1 AAATAA
71498 TGATAAGTAT
Statistics
Matches: 34, Mismatches: 12, Indels: 6
0.65 0.23 0.12
Matches are distributed among these distances:
21 20 0.59
22 14 0.41
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.29
Consensus pattern (21 bp):
AAATAAGCTTACGAGCTTATG
Found at i:72050 original size:260 final size:258
Alignment explanation
Indices: 71365--72966 Score: 2462
Period size: 260 Copynumber: 6.2 Consensus size: 258
71355 ACATATATAT
* * *
71365 AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTCTGAAATAATGGTAAGTATATTGGTAAA
1 AATGGTAAGTAGATT-GTAAAATAAGCTTACGAGCTTATGAAA-AATGGTAAGTAGATT-GTAAA
*
71430 ATAAGCTTACGAGCTTATGGAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTAT-GAA
63 ATAAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAA
* * *
71494 ATAATGATAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATGGTAAGTAGATTGTAA
128 A-AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAA
* * * * *
71559 AATAAGCTTACGTGCTTATGAAAAAAACGATAAGTAGATTGTAAAATAAGCTTACGAGCTTATGG
192 AATAAGCTTACGAGCTTAT-AGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATAG
71624 AAAA
256 -AAA
* *
71628 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAAATAGTAAGTATATTAGTAAAA
1 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTAT-GAAAAATGGTAAGTAGATT-GTAAAA
*
71693 TAAGCTTACGAGCTTATGGAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAA
64 TAAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAA
71758 AATGGTAAGTATATT-GTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAA
129 AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATT-GTAAA
* *
71822 ATAAGCTTACGAGCTTAT-GAAATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGG
193 ATAAGCTTACGAGCTTATAGAAA-AATGGTAAGTAGATT-GTAAAATAAGCTTACGAGCTTATAG
71886 AAA
256 AAA
* * * *
71889 AATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAATGTAAAAT
1 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTAT-GAAAAATGGTAAGTAGATTGTAAAAT
* ** *
71954 AAGCTTACGAGTTTATTTAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAA
65 AAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAA
* *
72019 ATGGTAAGTAGATT-GTAAAATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAAA
130 ATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATT-GTAAAA
* * *
72083 TAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAA
194 TAAGCTTACGAGCTTATAGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATAGAAA
* * *
72148 AATTGTAAGTAGAATGTAAAATAAGCTTACGAGCTTATGTAATAATGGTAAGTAGATTGTAAAAT
1 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATG-AAAAATGGTAAGTAGATTGTAAAAT
*
72213 AAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAAA
65 AAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAA
72278 ATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTAT-GAAATAATGGTAAGTATATTGGTAAA
130 ATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAA-AATGGTAAGTATATT-GTAAA
* * *
72342 ATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAA
193 ATAAGCTTACGAGCTTATAGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATAGAA
72407 A
258 A
* * * * *
72408 AATTGTAAGTAGAATGTAAAATAAGCTTACGAGTTTATTTAATAATGGTAAGTAGATTGTAAAAT
1 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTA-TGAAAAATGGTAAGTAGATTGTAAAAT
*
72473 AAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAAA
65 AAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAA
72538 ATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAAAAT
130 ATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAAAAT
* * * *
72603 AAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAATGTAAAATAAGCTTACGAGCTTAT-GTAAT
195 AAGCTTACGAGCTTATAGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATAG-AAA
72667 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAAAT
1 AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTAT-GAAAAATGGTAAGTAGATTGTAAAAT
* *
72732 AAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTAT-GAAA
65 AAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATT-GTAAAATAAGCTTACGAGCTTATGGAAA
72796 TAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAAA
129 -AATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAAA
* * * *
72861 ATAAGCTTAAGAGCTTATAGAAAAATGGTAAGTAGAATGTAAAATAAGCTTACGAACTTATAGTA
193 ATAAGCTTACGAGCTTATAGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATAGAA
*
72926 T
258 A
*
72927 AATGGTAAGTATATTGATAAAATAAGCTTACGAGCTTATG
1 AATGGTAAGTAGATTG-TAAAATAAGCTTACGAGCTTATG
72967 GAATATTGAT
Statistics
Matches: 1262, Mismatches: 60, Indels: 37
0.93 0.04 0.03
Matches are distributed among these distances:
258 3 0.00
259 317 0.25
260 617 0.49
261 140 0.11
262 163 0.13
263 22 0.02
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (258 bp):
AATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGAAAAATGGTAAGTAGATTGTAAAATA
AGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAAA
TGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAAAATA
AGCTTACGAGCTTATAGAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATAGAAA
Found at i:72214 original size:22 final size:22
Alignment explanation
Indices: 72188--72257 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
72178 GAGCTTATGT
72188 AATAATGGTAAGTAGATTGTAA
1 AATAATGGTAAGTAGATTGTAA
* * * * *
72210 AATAA-GCTTACG-AGCTTATGGA
1 AATAATG-GTAAGTAGATTGT-AA
72232 AA-AATGGTAAGTAGATTGTAA
1 AATAATGGTAAGTAGATTGTAA
72253 AATAA
1 AATAA
72258 GTTTACGAGC
Statistics
Matches: 33, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
21 14 0.42
22 19 0.58
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (22 bp):
AATAATGGTAAGTAGATTGTAA
Found at i:72266 original size:476 final size:476
Alignment explanation
Indices: 71363--72969 Score: 2833
Period size: 476 Copynumber: 3.4 Consensus size: 476
71353 ATACATATAT
*
71363 ATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTCT-GAAATAATGGTAAGTATATTGGT
1 ATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAA-AATGGTAAGTATATT-GT
* * * *
71427 AAAATAAGCTTACGAGCTTATGGAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATG
64 AAAATAAGCTTAAGAGCTTATAGAAAAATGGTAAGTAGAATGTAAAATAAGCTTACGAGCTTATG
* * * *
71492 AAATAATGATAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAATGGTAAGTAGATTGT
129 TAATAATGGTAAGTAGATT-GTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGT
* * * * * *
71557 AAAATAAGCTTACGTGCTTATGAAAAAAACGATAAGTAGATT-GTAAAATAAGCTTACGAGCTTA
193 AAAATAAGTTTACGAGCTTATG-GAAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTA
* * * * * *
71621 TGGAAAAAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAAATAGTAAGTATATT
257 TGG-AAAAATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAAT
*
71686 AGTAAAATAAGCTTACGAGCTTATGGAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTT
321 -GTAAAATAAGCTTACGAGCTTATGTAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTT
* *
71751 ATGGAAAAATGGTAAGTATATTGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATT
385 ATGGAAAAATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATT
71816 GGTAAAATAAGCTTACGAGCTTATGAA
450 GGTAAAATAAGCTTACGAGCTTATGAA
71843 ATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAA
1 ATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAA
* * *
71908 AATAAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAATGTAAAATAAGCTTACGAGTTTATTTA
66 AATAAGCTTAAGAGCTTATAGAAAAATGGTAAGTAGAATGTAAAATAAGCTTACGAGCTTATGTA
71973 ATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAA
131 ATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAA
72038 ATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGA
196 ATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGA
72103 AAAATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAATGTAAA
261 AAAATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAATGTAAA
72168 ATAAGCTTACGAGCTTATGTAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAA
326 ATAAGCTTACGAGCTTATGTAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAA
72233 AAATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAA
391 AAATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAA
72298 ATAAGCTTACGAGCTTATGAA
456 ATAAGCTTACGAGCTTATGAA
72319 ATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAA
1 ATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAA
* * *
72384 AATAAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAATGTAAAATAAGCTTACGAGTTTATTTA
66 AATAAGCTTAAGAGCTTATAGAAAAATGGTAAGTAGAATGTAAAATAAGCTTACGAGCTTATGTA
72449 ATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAA
131 ATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAA
72514 ATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGA
196 ATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGA
72579 AAAATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAATGTAAA
261 AAAATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAATGTAAA
72644 ATAAGCTTACGAGCTTATGTAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAA
326 ATAAGCTTACGAGCTTATGTAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAA
72709 AAATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAA
391 AAATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAA
72774 ATAAGCTTACGAGCTTATGAA
456 ATAAGCTTACGAGCTTATGAA
72795 ATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAA
1 ATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAA
*
72860 AATAAGCTTAAGAGCTTATAGAAAAATGGTAAGTAGAATGTAAAATAAGCTTACGAACTTATAGT
66 AATAAGCTTAAGAGCTTATAGAAAAATGGTAAGTAGAATGTAAAATAAGCTTACGAGCTTAT-GT
*
72925 -ATAATGGTAAGTATATTGATAAAATAAGCTTACGAGCTTATGGAA
130 AATAATGGTAAGTAGATTG-TAAAATAAGCTTACGAGCTTATGGAA
72970 TATTGATAAA
Statistics
Matches: 1091, Mismatches: 32, Indels: 11
0.96 0.03 0.01
Matches are distributed among these distances:
476 770 0.71
477 97 0.09
478 89 0.08
479 76 0.07
480 55 0.05
481 4 0.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (476 bp):
ATAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTATATTGTAA
AATAAGCTTAAGAGCTTATAGAAAAATGGTAAGTAGAATGTAAAATAAGCTTACGAGCTTATGTA
ATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAAAAATGGTAAGTAGATTGTAAA
ATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGA
AAAATGGTAAGTATATTGTAAAATAAGCTTAAGAGCTTATAGAAAAATTGTAAGTAGAATGTAAA
ATAAGCTTACGAGCTTATGTAATAATGGTAAGTAGATTGTAAAATAAGCTTACGAGCTTATGGAA
AAATGGTAAGTAGATTGTAAAATAAGTTTACGAGCTTATGGAAAAATGGTAAGTATATTGGTAAA
ATAAGCTTACGAGCTTATGAA
Found at i:72690 original size:22 final size:22
Alignment explanation
Indices: 72664--72733 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
72654 GAGCTTATGT
72664 AATAATGGTAAGTAGATTGTAA
1 AATAATGGTAAGTAGATTGTAA
* * * * *
72686 AATAA-GCTTACG-AGCTTATGGA
1 AATAATG-GTAAGTAGATTGT-AA
72708 AA-AATGGTAAGTAGATTGTAA
1 AATAATGGTAAGTAGATTGTAA
72729 AATAA
1 AATAA
72734 GTTTACGAGC
Statistics
Matches: 33, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
21 14 0.42
22 19 0.58
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (22 bp):
AATAATGGTAAGTAGATTGTAA
Found at i:94704 original size:25 final size:25
Alignment explanation
Indices: 94672--94722 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
94662 ACAATGATAT
*
94672 TTGCTTTAAAGATCTAGAGAGACTA
1 TTGCTTTAAAGATCTAGAGACACTA
94697 TTGCTTTAAAGATCTAGAGACACTA
1 TTGCTTTAAAGATCTAGAGACACTA
94722 T
1 T
94723 CTCTATGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (25 bp):
TTGCTTTAAAGATCTAGAGACACTA
Found at i:97230 original size:17 final size:16
Alignment explanation
Indices: 97208--97253 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
97198 TACCTGCCCG
97208 ACCCATTGACTTACCTA
1 ACCCATTGACTTACC-A
*
97225 ACCCATTGACCTGACCA
1 ACCCATTGA-CTTACCA
*
97242 AACCATTGACTT
1 ACCCATTGACTT
97254 CGGTCAGTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 2 0.08
17 18 0.72
18 5 0.20
ACGTcount: A:0.30, C:0.35, G:0.09, T:0.26
Consensus pattern (16 bp):
ACCCATTGACTTACCA
Found at i:97311 original size:22 final size:22
Alignment explanation
Indices: 97270--97312 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
97260 GTGTTGACCC
*
97270 TTGACTGGTCAGACTATTGACT
1 TTGACTGGTCAGACCATTGACT
* *
97292 TTGACTGGTCTGACCGTTGAC
1 TTGACTGGTCAGACCATTGAC
97313 CGAAAAGTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (22 bp):
TTGACTGGTCAGACCATTGACT
Found at i:100577 original size:56 final size:56
Alignment explanation
Indices: 100459--100668 Score: 196
Period size: 56 Copynumber: 3.8 Consensus size: 56
100449 TTTCAGGTAG
* * **** *
100459 TTTTAAAGAAACTAAGTCTGATTTTCAGAAATTTCTT-ATTGATT-T-TGCAATGAA
1 TTTTAAAGAAGCTAAGCCTGATTTTCAGGGGCTTCTTGA-TGATTATGTCCAATGAA
* * * *
100513 TTTTAAAGAAGTTGAGCCTGATTTTCAGGGGTTTCCTT-ATGATTATTTCCAATGAA
1 TTTTAAAGAAGCTAAGCCTGATTTTCAGGGGCTT-CTTGATGATTATGTCCAATGAA
* * *
100569 TTTTAAAGAAGCTAAGCTTGATTTTCAGGGGCTTCTTGATGATTATGTCAAAAGAA
1 TTTTAAAGAAGCTAAGCCTGATTTTCAGGGGCTTCTTGATGATTATGTCCAATGAA
* * *
100625 TTTTTAAAGAAACTAAGCCTAATTGTT-AGGGGTTTCTTGATGAT
1 -TTTTAAAGAAGCTAAGCCTGATT-TTCAGGGGCTTCTTGATGAT
100669 AACTGTAAAT
Statistics
Matches: 131, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
54 32 0.24
55 8 0.06
56 53 0.40
57 36 0.27
58 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (56 bp):
TTTTAAAGAAGCTAAGCCTGATTTTCAGGGGCTTCTTGATGATTATGTCCAATGAA
Found at i:100656 original size:57 final size:56
Alignment explanation
Indices: 100459--100723 Score: 182
Period size: 56 Copynumber: 4.7 Consensus size: 56
100449 TTTCAGGTAG
* * **** * *
100459 TTTTAAAGAAACTAAGTCTGATTTTCAGAAATTTCTT-ATTGATTTTG-C-AATGAA
1 TTTTAAAGAAACTAAGCCTAATTTTCAGGGGCTTCTTGA-TGATTATGTCAAAAGAA
** * * * * * *
100513 TTTTAAAGAAGTTGAGCCTGATTTTCAGGGGTTTCCTT-ATGATTATTTCCAATGAA
1 TTTTAAAGAAACTAAGCCTAATTTTCAGGGGCTT-CTTGATGATTATGTCAAAAGAA
* * *
100569 TTTTAAAGAAGCTAAGCTTGATTTTCAGGGGCTTCTTGATGATTATGTCAAAAGAA
1 TTTTAAAGAAACTAAGCCTAATTTTCAGGGGCTTCTTGATGATTATGTCAAAAGAA
* * *
100625 TTTTTAAAGAAACTAAGCCTAATTGTT-AGGGGTTTCTTGATGATAACTGT-AAATGTAA
1 -TTTTAAAGAAACTAAGCCTAATT-TTCAGGGGCTTCTTGATGATTA-TGTCAAAAG-AA
* * * * *
100683 GTTTTCAAGAAAATAAGCTTAATTTTCAAGGGTTTCTTGAT
1 -TTTTAAAGAAACTAAGCCTAATTTTCAGGGGCTTCTTGAT
100724 TAGTAAGTCT
Statistics
Matches: 175, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
54 33 0.19
55 8 0.05
56 51 0.29
57 43 0.25
58 40 0.23
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (56 bp):
TTTTAAAGAAACTAAGCCTAATTTTCAGGGGCTTCTTGATGATTATGTCAAAAGAA
Found at i:100706 original size:58 final size:57
Alignment explanation
Indices: 100533--100723 Score: 183
Period size: 57 Copynumber: 3.4 Consensus size: 57
100523 GTTGAGCCTG
* * * * ** *
100533 ATTTTCAGGGGTTTCCTT-ATGATTATTTCCAATGAA-TTTTAAAGAAGCTAAGCTTG
1 ATTTTCAGGGGTTT-CTTGATGATAATGTCAAAAGAAGTTTTAAAGAAAATAAGCTTA
* * * * *
100589 ATTTTCAGGGGCTTCTTGATGATTATGTCAAAAGAATTTTTAAAGAAACTAAGCCTA
1 ATTTTCAGGGGTTTCTTGATGATAATGTCAAAAGAAGTTTTAAAGAAAATAAGCTTA
* *
100646 ATTGTT-AGGGGTTTCTTGATGATAACTGT-AAATGTAAGTTTTCAAGAAAATAAGCTTA
1 ATT-TTCAGGGGTTTCTTGATGATAA-TGTCAAAAG-AAGTTTTAAAGAAAATAAGCTTA
*
100704 ATTTTCAAGGGTTTCTTGAT
1 ATTTTCAGGGGTTTCTTGAT
100724 TAGTAAGTCT
Statistics
Matches: 114, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
55 3 0.03
56 28 0.25
57 43 0.38
58 40 0.35
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (57 bp):
ATTTTCAGGGGTTTCTTGATGATAATGTCAAAAGAAGTTTTAAAGAAAATAAGCTTA
Found at i:101141 original size:2 final size:2
Alignment explanation
Indices: 101134--101168 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
101124 ACATTTTATG
101134 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
101169 GGCATCCTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:101749 original size:46 final size:47
Alignment explanation
Indices: 101648--102145 Score: 666
Period size: 47 Copynumber: 10.7 Consensus size: 47
101638 TATTTATGGA
*
101648 ATCCTTTCATGCCTTAATGCATTCGTTCATGCATTTTTAGTTATGAC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGAC
* * *
101695 ATCCTTTCATGCCTTAATGCATCTGTTCAGGCA-TTTTATTTATGAC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGAC
*
101741 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGAC
* *
101788 ATCCTTTCATGCCTTAACGCATCCGTTCATGCATTTTTAGTTATGGC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGAC
* ** * *
101835 ATCCTTTCATGCCTTAATACATCTATTCATGCATTTTTA-TTTTTAGC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGA-C
** * * *
101882 ATCCTTTCATGCCTTAATGCATAAGTTAATGCAATTTTAGTTATGGC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGAC
* * * * **
101929 ATTCTTTCAAGCCTTAATGCATCCATTCATGCA-TTTTATTTATGGT
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGAC
* *
101975 ATCCTTTCATACCTTAATGCATCCGTTCATGCA-TTTTACTTATGGA-
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTAT-GAC
* ** *
102021 ATCCTTTCATACCTTAATGCATATGTTCATGCA-TTTTAGTTATGGC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGAC
*
102067 ATCCTTTCATGCCTTAATGCATCTGTTCATGCATTTTTAGTTATGAC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGAC
102114 ATCCTTTCATGCCTTAATGCATCCGTTCATGC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGC
102146 CTTAATGCAT
Statistics
Matches: 398, Mismatches: 47, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
45 1 0.00
46 166 0.42
47 228 0.57
48 3 0.01
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.43
Consensus pattern (47 bp):
ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGAC
Found at i:101749 original size:93 final size:93
Alignment explanation
Indices: 101648--102145 Score: 687
Period size: 93 Copynumber: 5.3 Consensus size: 93
101638 TATTTATGGA
* *
101648 ATCCTTTCATGCCTTAATGCATTCGTTCATGCATTTTTAGTTATGACATCCTTTCATGCCTTAAT
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAAT
* * *
101713 GCATCTGTTCAGGCATTTTATTTATGAC
66 GCATCCGTTCATGCATTTTAGTTATGAC
*
101741 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAAC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAAT
*
101806 GCATCCGTTCATGCATTTTTAGTTATGGC
66 GCATCCGTTCATGCA-TTTTAGTTATGAC
* ** * * *
101835 ATCCTTTCATGCCTTAATACATCTATTCATGCATTTTTATTTTTAGCATCCTTTCATGCCTTAAT
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAAT
** * *
101900 GCATAAGTTAATGCAATTTTAGTTATGGC
66 GCATCCGTTCATGC-ATTTTAGTTATGAC
* * * * * *
101929 ATTCTTTCAAGCCTTAATGCATCCATTCATGCA-TTTTATTTATGGTATCCTTTCATACCTTAAT
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAAT
*
101993 GCATCCGTTCATGCATTTTACTTATGGA-
66 GCATCCGTTCATGCATTTTAGTTAT-GAC
* **
102021 ATCCTTTCATACCTTAATGCATATGTTCATGCA-TTTTAGTTATGGCATCCTTTCATGCCTTAAT
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAAT
*
102085 GCATCTGTTCATGCATTTTTAGTTATGAC
66 GCATCCGTTCATGCA-TTTTAGTTATGAC
102114 ATCCTTTCATGCCTTAATGCATCCGTTCATGC
1 ATCCTTTCATGCCTTAATGCATCCGTTCATGC
102146 CTTAATGCAT
Statistics
Matches: 356, Mismatches: 44, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
92 81 0.23
93 152 0.43
94 122 0.34
95 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.43
Consensus pattern (93 bp):
ATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAAT
GCATCCGTTCATGCATTTTAGTTATGAC
Found at i:101797 original size:27 final size:27
Alignment explanation
Indices: 101759--101846 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
101749 ATGCCTTAAT
101759 GCATCCGTTCATGCATTTTTAGTTATG
1 GCATCCGTTCATGCATTTTTAGTTATG
* * *
101786 GCATCCTTTCATGC---CTTA---A-C
1 GCATCCGTTCATGCATTTTTAGTTATG
101806 GCATCCGTTCATGCATTTTTAGTTATG
1 GCATCCGTTCATGCATTTTTAGTTATG
*
101833 GCATCCTTTCATGC
1 GCATCCGTTCATGC
101847 CTTAATACAT
Statistics
Matches: 47, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
20 13 0.28
21 1 0.02
23 3 0.06
24 3 0.06
26 1 0.02
27 26 0.55
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.41
Consensus pattern (27 bp):
GCATCCGTTCATGCATTTTTAGTTATG
Found at i:102148 original size:67 final size:67
Alignment explanation
Indices: 102065--102212 Score: 269
Period size: 67 Copynumber: 2.2 Consensus size: 67
102055 TTTAGTTATG
* *
102065 GCATCCTTTCATGCCTTAATGCATCTGTTCATGCATTTTTAGTTATGACATCCTTTCATGCCTTA
1 GCATCCGTTCATGCCTTAATGCATCTGTTCATGCATTTTTAGTAATGACATCCTTTCATGCCTTA
102130 AT
66 AT
102132 GCATCCGTTCATGCCTTAATGCATCTGTTCATGCATTTTTAGTAATGACATCCTTTCATGCCTTA
1 GCATCCGTTCATGCCTTAATGCATCTGTTCATGCATTTTTAGTAATGACATCCTTTCATGCCTTA
102197 AT
66 AT
*
102199 GCATTCGTTCATGC
1 GCATCCGTTCATGC
102213 ATTTTATTTA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 78 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (67 bp):
GCATCCGTTCATGCCTTAATGCATCTGTTCATGCATTTTTAGTAATGACATCCTTTCATGCCTTA
AT
Found at i:102211 original size:20 final size:20
Alignment explanation
Indices: 102065--102258 Score: 100
Period size: 20 Copynumber: 8.7 Consensus size: 20
102055 TTTAGTTATG
*
102065 GCATCCTTTCATGCCTTAAT
1 GCATCCGTTCATGCCTTAAT
* *
102085 GCATCTGTTCATGCATTTTTAGTTAT
1 GCATCCGTTCATGC---CTTA---AT
*
102111 GACATCCTTTCATGCCTTAAT
1 G-CATCCGTTCATGCCTTAAT
102132 GCATCCGTTCATGCCTTAAT
1 GCATCCGTTCATGCCTTAAT
* *
102152 GCATCTGTTCATGCATTTTTAGTAAT
1 GCATCCGTTCATGC----CT--TAAT
*
102178 GACATCCTTTCATGCCTTAAT
1 G-CATCCGTTCATGCCTTAAT
* *
102199 GCATTCGTTCATGCATTTTATTTAT
1 GCATCCGTTCATGC--CTTA---AT
* *
102224 GGCATCCTTTCAAGCCTTAAT
1 -GCATCCGTTCATGCCTTAAT
*
102245 GTATCCGTTCATGC
1 GCATCCGTTCATGC
102259 ATTTTTTTGT
Statistics
Matches: 132, Mismatches: 22, Indels: 40
0.68 0.11 0.21
Matches are distributed among these distances:
20 65 0.49
21 10 0.08
22 3 0.02
23 4 0.03
24 7 0.05
25 2 0.02
26 19 0.14
27 22 0.17
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (20 bp):
GCATCCGTTCATGCCTTAAT
Found at i:102235 original size:46 final size:47
Alignment explanation
Indices: 102132--102312 Score: 238
Period size: 46 Copynumber: 3.9 Consensus size: 47
102122 ATGCCTTAAT
* * * *
102132 GCATCCGTTCATGCCTTAATGCATCTGTTCATGCATTTTTAGTAATG
1 GCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTATTTATG
* *
102179 ACATCCTTTCATGCCTTAATGCATTCGTTCATGCA-TTTTATTTATG
1 GCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTATTTATG
* * * *
102225 GCATCCTTTCAAGCCTTAATGTATCCGTTCATGCATTTTTTTGTTATA
1 GCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAT-TTATG
* *
102273 GCAACCTTTTATGCCTTAATGCATCCGTTCATGCATTTTT
1 GCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTT
102313 TAGTTATGTA
Statistics
Matches: 116, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
46 40 0.34
47 36 0.31
48 40 0.34
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (47 bp):
GCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTATTTATG
Found at i:102293 original size:48 final size:46
Alignment explanation
Indices: 102130--102320 Score: 240
Period size: 48 Copynumber: 4.1 Consensus size: 46
102120 TCATGCCTTA
* * *
102130 ATGCATCCGTTCATGCCTTAATGCATCTGTTCATGCATTTTTAGTA
1 ATGCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTT
* *
102176 ATGACATCCTTTCATGCCTTAATGCATTCGTTCATGCA-TTTTATTT
1 ATG-CATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTT
* * *
102222 ATGGCATCCTTTCAAGCCTTAATGTATCCGTTCATGCATTTTTTTGTT
1 AT-GCATCCTTTCATGCCTTAATGCATCCGTTCATGCA-TTTTTAGTT
* *
102270 ATAGCAACCTTTTATGCCTTAATGCATCCGTTCATGCATTTTTTAGTT
1 AT-GCATCCTTTCATGCCTTAATGCATCCGTTCATGCA-TTTTTAGTT
102318 ATG
1 ATG
102321 TATTCGGTTT
Statistics
Matches: 125, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
46 42 0.34
47 33 0.26
48 50 0.40
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (46 bp):
ATGCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTT
Found at i:102302 original size:94 final size:93
Alignment explanation
Indices: 102132--102311 Score: 254
Period size: 94 Copynumber: 1.9 Consensus size: 93
102122 ATGCCTTAAT
* * *
102132 GCATCCGTTCATGCCTTAATGCATCTGTTCATGCATTTTTAGTAATGACATCCTTTCATGCCTTA
1 GCATCCGTTCAAGCCTTAATGCATCCGTTCATGCATTTTTAGTAATGACAACCTTTCATGCCTTA
*
102197 ATGCATTCGTTCATGCATTTTATTTATG
66 ATGCATCCGTTCATGCATTTTATTTATG
* * * * *
102225 GCATCCTTTCAAGCCTTAATGTATCCGTTCATGCATTTTTTTGTTAT-AGCAACCTTTTATGCCT
1 GCATCCGTTCAAGCCTTAATGCATCCGTTCATGCA-TTTTTAGTAATGA-CAACCTTTCATGCCT
102289 TAATGCATCCGTTCATGCATTTT
64 TAATGCATCCGTTCATGCATTTT
102312 TTAGTTATGT
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
93 32 0.42
94 44 0.58
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.43
Consensus pattern (93 bp):
GCATCCGTTCAAGCCTTAATGCATCCGTTCATGCATTTTTAGTAATGACAACCTTTCATGCCTTA
ATGCATCCGTTCATGCATTTTATTTATG
Found at i:102830 original size:21 final size:20
Alignment explanation
Indices: 102797--102836 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
102787 TGATATTGAT
*
102797 ACCTTCCTTTCGGTATCGAG
1 ACCTTCCCTTCGGTATCGAG
102817 ACCTCTCCCTTCGGTATCGA
1 ACCT-TCCCTTCGGTATCGA
102837 TATTGATTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.15, C:0.35, G:0.17, T:0.33
Consensus pattern (20 bp):
ACCTTCCCTTCGGTATCGAG
Found at i:105090 original size:23 final size:23
Alignment explanation
Indices: 105059--105127 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
105049 CACCACAACT
*
105059 CGTATAATTTCACCGAAGTGCCA
1 CGTAGAATTTCACCGAAGTGCCA
* *
105082 CGTAGAATTGCACC-AGAGTGCCG
1 CGTAGAATTTCACCGA-AGTGCCA
*
105105 CGTAGAATTGT-ACCGTAGTGCCA
1 CGTAGAATT-TCACCGAAGTGCCA
105128 TATAATAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 1 0.03
23 36 0.97
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (23 bp):
CGTAGAATTTCACCGAAGTGCCA
Found at i:105371 original size:30 final size:30
Alignment explanation
Indices: 105337--105405 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
105327 ACATAATTTA
* * * *
105337 TATCACGTAGGCATATTATTTTCGTACCTT
1 TATCACATAGGCATATCATTTCCATACCTT
*
105367 TATCACATAGTCATATCATTTCCATACCTT
1 TATCACATAGGCATATCATTTCCATACCTT
105397 TATCACATA
1 TATCACATA
105406 ACTCATATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (30 bp):
TATCACATAGGCATATCATTTCCATACCTT
Found at i:105956 original size:21 final size:21
Alignment explanation
Indices: 105930--105985 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
105920 TTATCATTGA
*
105930 TGCATCGGTTCACAATGAATG
1 TGCATCGGTGCACAATGAATG
*
105951 TGCATCGGTGCATAATGAATG
1 TGCATCGGTGCACAATGAATG
*
105972 TGCATCGATGCACA
1 TGCATCGGTGCACA
105986 TTGCCCAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (21 bp):
TGCATCGGTGCACAATGAATG
Found at i:110823 original size:14 final size:14
Alignment explanation
Indices: 110804--110832 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
110794 TCCATGACCT
110804 TATCTTGGCTCGAG
1 TATCTTGGCTCGAG
110818 TATCTTGGCTCGAG
1 TATCTTGGCTCGAG
110832 T
1 T
110833 CAACATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.21, G:0.28, T:0.38
Consensus pattern (14 bp):
TATCTTGGCTCGAG
Found at i:116645 original size:255 final size:257
Alignment explanation
Indices: 116188--116688 Score: 772
Period size: 255 Copynumber: 1.9 Consensus size: 257
116178 TCTCTGGGCT
*
116188 TTTCTTCTCTGTTAAGATGATAAGAGGAAGTTAAATGCATCCAATGCAATGTGTATGTACAGATA
1 TTTCTTCTCTGTTAAGATGATAAGAGGAAGTTAAATACATCCAATGCAATGTGTATGTACAGATA
*
116253 TATTAATGCATTAAATTCTATACACAAAGCAGAATATATATGGTTGTACATTGTACTGATCACTA
66 TATTAATGCATTAAA---TATACAC-AAGCAGAAAATATATGGTTGTACATTGTACTGATCACTA
* *
116318 AATTGGCAGATGGAAAATGGAATCCATAATAATCGTGGGGTTTTAAACTTTTAATTAATTTCAAA
127 AATTGGCAGATGCAAAATGGAATCCATAATAATCATGGGGTTTTAAACTTTTAATTAATTTCAAA
*
116383 TATTGGAAGTGCATGACCAGTATTATATTTCACATTAAGTTATTTGTGATTGCCCAAATTCTACG
192 TATTGGAAGTGCATGACCAATATTATATTTCACATTAAGTTATTTGTGATTGCCCAAATTCTACG
116448 A
257 A
* * * * * *
116449 TTTCTTCTCTGTTATGATGGTAGGAGGAAGTTAAATACATTCAATGCAGTGTGTATGTACTGATA
1 TTTCTTCTCTGTTAAGATGATAAGAGGAAGTTAAATACATCCAATGCAATGTGTATGTACAGATA
* * *
116514 TATTAATGCATTCAA-ATGCAC-AGCAGAAAATCTATGGTTGTACATTGTACTGATCACTAAATT
66 TATTAATGCATTAAATATACACAAGCAGAAAATATATGGTTGTACATTGTACTGATCACTAAATT
*
116577 GGCAGATGCAAAATGGAATTCATAATAATCATGGGGTTTTAAACTTTTAATTAATTTCAAATATT
131 GGCAGATGCAAAATGGAATCCATAATAATCATGGGGTTTTAAACTTTTAATTAATTTCAAATATT
* * * **
116642 GGAAGTGCATGACCAATATTGTCTTTCTCATTGTGTTATTTGTGATT
196 GGAAGTGCATGACCAATATTATATTTCACATTAAGTTATTTGTGATT
116689 TCTCAAATCC
Statistics
Matches: 220, Mismatches: 20, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
255 143 0.65
257 5 0.02
261 72 0.33
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.37
Consensus pattern (257 bp):
TTTCTTCTCTGTTAAGATGATAAGAGGAAGTTAAATACATCCAATGCAATGTGTATGTACAGATA
TATTAATGCATTAAATATACACAAGCAGAAAATATATGGTTGTACATTGTACTGATCACTAAATT
GGCAGATGCAAAATGGAATCCATAATAATCATGGGGTTTTAAACTTTTAATTAATTTCAAATATT
GGAAGTGCATGACCAATATTATATTTCACATTAAGTTATTTGTGATTGCCCAAATTCTACGA
Found at i:118248 original size:11 final size:11
Alignment explanation
Indices: 118223--118261 Score: 57
Period size: 10 Copynumber: 3.8 Consensus size: 11
118213 GAAATCTGGA
118223 AACCGG-TTT-
1 AACCGGTTTTG
118232 AACCGGTTTTG
1 AACCGGTTTTG
118243 AACCGGTTTTG
1 AACCGGTTTTG
118254 -ACCGGTTT
1 AACCGGTTT
118262 GACCGGTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 6 0.21
10 11 0.39
11 11 0.39
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.36
Consensus pattern (11 bp):
AACCGGTTTTG
Found at i:118274 original size:19 final size:21
Alignment explanation
Indices: 118233--118275 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
118223 AACCGGTTTA
**
118233 ACCGGTTTTGAACCGGTTTTG
1 ACCGGTTTTGAACCGGTCATG
118254 ACCGG-TTTG-ACCGGTCATG
1 ACCGGTTTTGAACCGGTCATG
118273 ACC
1 ACC
118276 TGACCCGACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 4 0.20
21 5 0.25
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.30
Consensus pattern (21 bp):
ACCGGTTTTGAACCGGTCATG
Found at i:118298 original size:18 final size:18
Alignment explanation
Indices: 118271--118315 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
118261 TGACCGGTCA
*
118271 TGACCTGACCCGACCCGT
1 TGACCCGACCCGACCCGT
118289 TGACCCGACCCGACCCGT
1 TGACCCGACCCGACCCGT
118307 TGACCCGAC
1 TGACCCGAC
118316 TCGATCGTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.47, G:0.22, T:0.13
Consensus pattern (18 bp):
TGACCCGACCCGACCCGT
Found at i:118315 original size:13 final size:13
Alignment explanation
Indices: 118276--118300 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118266 GGTCATGACC
118276 TGACCCGACCCGT
1 TGACCCGACCCGT
118289 TGACCCGACCCG
1 TGACCCGACCCG
118301 ACCCGTTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.24, T:0.12
Consensus pattern (13 bp):
TGACCCGACCCGT
Found at i:118481 original size:28 final size:28
Alignment explanation
Indices: 118365--118544 Score: 193
Period size: 29 Copynumber: 6.4 Consensus size: 28
118355 ATTCAGTTTT
* *
118365 GGTGCTATTCTGGGAATTAATTCGAAATG
1 GGTGCTATTTTGGGAATTAATTCGAAA-A
* *
118394 GGTGCTATTTTGGTAATT-TTTCGAAAA
1 GGTGCTATTTTGGGAATTAATTCGAAAA
* * * *
118421 -GTGATATTCTAGGAATTAATTCGAAATT
1 GGTGCTATTTTGGGAATTAATTCGAAA-A
118449 GGTGCTATTTTGGGAATTAATTCGAAAA
1 GGTGCTATTTTGGGAATTAATTCGAAAA
*
118477 GGTGCTATTTTGGGTATTAATTCGAAAA
1 GGTGCTATTTTGGGAATTAATTCGAAAA
* * **
118505 GGGTGCTATTTTGGTAATTATTTTAAAAA
1 -GGTGCTATTTTGGGAATTAATTCGAAAA
118534 GGGTGCTATTT
1 -GGTGCTATTT
118545 GTGTAAAATG
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 13 0.10
27 7 0.06
28 34 0.27
29 73 0.57
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (28 bp):
GGTGCTATTTTGGGAATTAATTCGAAAA
Found at i:118501 original size:84 final size:84
Alignment explanation
Indices: 118341--118505 Score: 237
Period size: 84 Copynumber: 2.0 Consensus size: 84
118331 TGACTGGTGC
** *
118341 TATTCTAGGAATTAATTCAGTTTTGGTGCTATTCTGGGAATTAATTCGAAATGGGTGCTATTTTG
1 TATTCTAGGAATTAATTCAGAATTGGTGCTATTCTGGGAATTAATTCGAAATAGGTGCTATTTTG
*
118406 GTAATTTTTCGAAAAGTGA
66 GTAATTATTCGAAAAGTGA
*
118425 TATTCTAGGAATTAATTC-GAAATTGGTGCTATTTTGGGAATTAATTCGAAA-AGGTGCTATTTT
1 TATTCTAGGAATTAATTCAG-AATTGGTGCTATTCTGGGAATTAATTCGAAATAGGTGCTATTTT
118488 GGGT-ATTAATTCGAAAAG
65 -GGTAATT-ATTCGAAAAG
118506 GGTGCTATTT
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
83 15 0.21
84 58 0.79
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (84 bp):
TATTCTAGGAATTAATTCAGAATTGGTGCTATTCTGGGAATTAATTCGAAATAGGTGCTATTTTG
GTAATTATTCGAAAAGTGA
Found at i:122005 original size:214 final size:214
Alignment explanation
Indices: 121636--122063 Score: 820
Period size: 214 Copynumber: 2.0 Consensus size: 214
121626 ATTTTTCTGG
121636 CTGACCTGATGGAGTTACCATTTGAAGAGTTCGATCTGATTCTCGGCGTAGATTGGTTGTACAAA
1 CTGACCTGATGGAGTTACCATTTGAAGAGTTCGATCTGATTCTCGGCGTAGATTGGTTGTACAAA
121701 CATCGAGTAAATATTGATTTTAAGACTAAGAGAGTTGTTCTGAAGACCCCAGATAATCGAAAGAT
66 CATCGAGTAAATATTGATTTTAAGACTAAGAGAGTTGTTCTGAAGACCCCAGATAATCGAAAGAT
* *
121766 TGTAATGATCGGGGAACGACGTGGATTTCTGACGAATGTTGTGTCTGCCTTGGTAGCGGAGAAGA
131 TGTAATGATCGGGGAACGACGTGGATTTCTGACGAATATTGTGCCTGCCTTGGTAGCGGAGAAGA
121831 TGATCAGGAAGGGTTCCGA
196 TGATCAGGAAGGGTTCCGA
* *
121850 CTGACCTGATGGAGTTACCCTTTGAAGAGTTCGATCTGATTCTCGGCGTATATTGGTTGTACAAA
1 CTGACCTGATGGAGTTACCATTTGAAGAGTTCGATCTGATTCTCGGCGTAGATTGGTTGTACAAA
121915 CATCGAGTAAATATTGATTTTAAGACTAAGAGAGTTGTTCTGAAGACCCCAGATAATCGAAAGAT
66 CATCGAGTAAATATTGATTTTAAGACTAAGAGAGTTGTTCTGAAGACCCCAGATAATCGAAAGAT
121980 TGTAATGATCGGGGAACGACGTGGATTTCTGACGAATATTGTGCCTGCCTTGGTAGCGGAGAAGA
131 TGTAATGATCGGGGAACGACGTGGATTTCTGACGAATATTGTGCCTGCCTTGGTAGCGGAGAAGA
122045 TGATCAGGAAGGGTTCCGA
196 TGATCAGGAAGGGTTCCGA
122064 GGCGTTTCTT
Statistics
Matches: 210, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
214 210 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (214 bp):
CTGACCTGATGGAGTTACCATTTGAAGAGTTCGATCTGATTCTCGGCGTAGATTGGTTGTACAAA
CATCGAGTAAATATTGATTTTAAGACTAAGAGAGTTGTTCTGAAGACCCCAGATAATCGAAAGAT
TGTAATGATCGGGGAACGACGTGGATTTCTGACGAATATTGTGCCTGCCTTGGTAGCGGAGAAGA
TGATCAGGAAGGGTTCCGA
Found at i:125793 original size:23 final size:23
Alignment explanation
Indices: 125767--125816 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
125757 GACCGGTCAT
125767 GACCCGACACGTTGACCCGACCC
1 GACCCGACACGTTGACCCGACCC
*
125790 GACCCGACCCGTTGACCCGACCC
1 GACCCGACACGTTGACCCGACCC
125813 GACC
1 GACC
125817 GTTGACCGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.50, G:0.22, T:0.08
Consensus pattern (23 bp):
GACCCGACACGTTGACCCGACCC
Found at i:125812 original size:13 final size:13
Alignment explanation
Indices: 125766--125813 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
125756 TGACCGGTCA
*
125766 TGACCCGACACGT
1 TGACCCGACCCGT
125779 TGACCCGACCC--
1 TGACCCGACCCGT
125790 -GACCCGACCCGT
1 TGACCCGACCCGT
125802 TGACCCGACCCG
1 TGACCCGACCCG
125814 ACCGTTGACC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
10 10 0.32
13 21 0.68
ACGTcount: A:0.19, C:0.48, G:0.23, T:0.10
Consensus pattern (13 bp):
TGACCCGACCCGT
Found at i:125820 original size:17 final size:18
Alignment explanation
Indices: 125785--125823 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
125775 ACGTTGACCC
125785 GACCCGACCCGACCCGTT
1 GACCCGACCCGACCCGTT
125803 GACCCGACCCGA-CCGTT
1 GACCCGACCCGACCCGTT
125820 GACC
1 GACC
125824 GTTGACCGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.18, C:0.49, G:0.23, T:0.10
Consensus pattern (18 bp):
GACCCGACCCGACCCGTT
Found at i:125892 original size:29 final size:29
Alignment explanation
Indices: 125831--126008 Score: 125
Period size: 29 Copynumber: 6.3 Consensus size: 29
125821 ACCGTTGACC
* ** *
125831 GGTGCTATTCTGGGATTTAATTC-AGTTTT
1 GGTGCTATTCTGGGAATTAATTCGA-AATG
125860 GGTGCTATTCTGGGAATTAATTCGAAATG
1 GGTGCTATTCTGGGAATTAATTCGAAATG
* * *
125889 GGTGCT-TTTTGGTAATT--TTTGAAA--
1 GGTGCTATTCTGGGAATTAATTCGAAATG
* * * *
125913 AGTGATATTCTGGGAATTCATTCGAAATT
1 GGTGCTATTCTGGGAATTAATTCGAAATG
* * *
125942 GGTGCTATTTTGGTAATTAATTCGAAAAG
1 GGTGCTATTCTGGGAATTAATTCGAAATG
* * * ** *
125971 GGTGCTATTTTGGTAATTATTTTAAAAAG
1 GGTGCTATTCTGGGAATTAATTCGAAATG
126000 GGTGCTATT
1 GGTGCTATT
126009 TGTGTAAAAT
Statistics
Matches: 121, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
24 4 0.03
25 9 0.07
26 6 0.05
27 6 0.05
28 9 0.07
29 86 0.71
30 1 0.01
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (29 bp):
GGTGCTATTCTGGGAATTAATTCGAAATG
Found at i:129539 original size:17 final size:17
Alignment explanation
Indices: 129517--129552 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
129507 TGGCCCCAAG
129517 ATGCCAACGACGTTCCC
1 ATGCCAACGACGTTCCC
129534 ATGCCAACGACGTTCCC
1 ATGCCAACGACGTTCCC
129551 AT
1 AT
129553 TCCACCTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.39, G:0.17, T:0.19
Consensus pattern (17 bp):
ATGCCAACGACGTTCCC
Found at i:131965 original size:31 final size:29
Alignment explanation
Indices: 131911--131993 Score: 78
Period size: 30 Copynumber: 2.7 Consensus size: 29
131901 TTTGACTGAA
* *
131911 TTTAAGGGTTAG-TTCATATTTTATATAGAG
1 TTTAA-GGTTAGATT-ATATTTTATATAAAC
*
131941 TTTAAGAGTTAGATTAGTATTTTATGTAAAC
1 TTTAAG-GTTAGATTA-TATTTTATATAAAC
*
131972 TTTAAGGTTAAATTAATATTTT
1 TTTAAGGTTAGATT-ATATTTT
131994 GTCTAAATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
29 1 0.02
30 24 0.53
31 20 0.44
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (29 bp):
TTTAAGGTTAGATTATATTTTATATAAAC
Found at i:132015 original size:30 final size:30
Alignment explanation
Indices: 131926--132022 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 30
131916 GGGTTAGTTC
* * * * *
131926 ATATTTTATATAGAGTTTAAGAGTTAGATTA
1 ATATTTTATCTAAACTTTAAG-GTCAAATTA
* * *
131957 GTATTTTATGTAAACTTTAAGGTTAAATTA
1 ATATTTTATCTAAACTTTAAGGTCAAATTA
*
131987 ATATTTTGTCTAAA-TTTAGAGGTCAAATTA
1 ATATTTTATCTAAACTTTA-AGGTCAAATTA
*
132017 AAATTT
1 ATATTT
132023 AAACATTTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
29 4 0.07
30 34 0.62
31 17 0.31
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.45
Consensus pattern (30 bp):
ATATTTTATCTAAACTTTAAGGTCAAATTA
Found at i:132598 original size:21 final size:23
Alignment explanation
Indices: 132574--132629 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 23
132564 ATAAATGATT
132574 ATATATATATT-ATTA-TTAAAA
1 ATATATATATTAATTATTTAAAA
* *
132595 ATAT-TATTTTAATTATTTTAAA
1 ATATATATATTAATTATTTAAAA
132617 ATACTAATATATT
1 ATA-T-ATATATT
132630 GTATATAGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
20 5 0.19
21 8 0.30
22 8 0.30
23 1 0.04
25 5 0.19
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
ATATATATATTAATTATTTAAAA
Found at i:137777 original size:13 final size:13
Alignment explanation
Indices: 137758--137881 Score: 69
Period size: 13 Copynumber: 9.2 Consensus size: 13
137748 AGATAAAACG
137758 AACAAATAAAATA
1 AACAAATAAAATA
137771 ATA-AAATAATATATA
1 A-ACAAATAA-A-ATA
137786 AACAAATAAAATA
1 AACAAATAAAATA
137799 AACAAATAAACAATA
1 AACAAAT-AA-AATA
*
137814 AATAAATTAGAAA-A
1 AACAAA-TA-AAATA
*
137828 AACCAAACAAAATA
1 AA-CAAATAAAATA
* *
137842 AAAAAACGAAAAT-
1 AACAAA-TAAAATA
137855 -ACAAATACAAA-A
1 AACAAATA-AAATA
**
137867 ATTAAATAAAATA
1 AACAAATAAAATA
137880 AA
1 AA
137882 ATAAAAAGTA
Statistics
Matches: 86, Mismatches: 10, Indels: 30
0.68 0.08 0.24
Matches are distributed among these distances:
11 1 0.01
12 10 0.12
13 30 0.35
14 18 0.21
15 25 0.29
16 2 0.02
ACGTcount: A:0.73, C:0.08, G:0.02, T:0.17
Consensus pattern (13 bp):
AACAAATAAAATA
Found at i:137813 original size:20 final size:20
Alignment explanation
Indices: 137758--137819 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
137748 AGATAAAACG
*
137758 AACAAATAAAATAATAAAAT-
1 AACAAAT-AAACAATAAAATA
* *
137778 AATATATAAACAAATAAAATA
1 AACAAATAAAC-AATAAAATA
137799 AACAAATAAACAAT-AAATA
1 AACAAATAAACAATAAAATA
137818 AA
1 AA
137820 TTAGAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 10 0.29
20 16 0.46
21 9 0.26
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (20 bp):
AACAAATAAACAATAAAATA
Found at i:137814 original size:28 final size:28
Alignment explanation
Indices: 137758--137820 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
137748 AGATAAAACG
*
137758 AACAAATAAAATAATAAAATAATATATA
1 AACAAATAAAATAATAAAATAATAAATA
137786 AACAAATAAAATAA-ACAAATAA-ACAATA
1 AACAAATAAAATAATA-AAATAATA-AATA
*
137814 AATAAAT
1 AACAAAT
137821 TAGAAAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 2 0.06
28 29 0.94
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (28 bp):
AACAAATAAAATAATAAAATAATAAATA
Found at i:138114 original size:24 final size:24
Alignment explanation
Indices: 138083--138136 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
138073 AAGGTTAGGT
*
138083 TAATAATA-TATAT-ATAATATAATA
1 TAATAATACTA-ATGATAAAAT-ATA
138107 TAATAATACTAATGATAAAATATA
1 TAATAATACTAATGATAAAATATA
138131 TAATAA
1 TAATAA
138137 AACTTAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 8 0.30
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (24 bp):
TAATAATACTAATGATAAAATATA
Found at i:147481 original size:15 final size:15
Alignment explanation
Indices: 147461--147494 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
147451 AAGCTTGCGC
**
147461 TGGAGTATGTTCTGG
1 TGGAGTATGAACTGG
147476 TGGAGTATGAACTGG
1 TGGAGTATGAACTGG
147491 TGGA
1 TGGA
147495 CCACACGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.41, T:0.32
Consensus pattern (15 bp):
TGGAGTATGAACTGG
Found at i:147698 original size:15 final size:15
Alignment explanation
Indices: 147680--147729 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
147670 CACACATTGA
147680 TGGAGCAGATGCTGG
1 TGGAGCAGATGCTGG
* * * *
147695 TGGAGCACACGTTGA
1 TGGAGCAGATGCTGG
147710 TGGAGCAGATGCTGG
1 TGGAGCAGATGCTGG
147725 TGGAG
1 TGGAG
147730 AATGTGTTGT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.22, C:0.14, G:0.44, T:0.20
Consensus pattern (15 bp):
TGGAGCAGATGCTGG
Found at i:147729 original size:30 final size:30
Alignment explanation
Indices: 147660--147729 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 30
147650 CATAGACAAA
*
147660 GCTGGTGGAACACACATTGATGGAGCAGAT
1 GCTGGTGGAGCACACATTGATGGAGCAGAT
*
147690 GCTGGTGGAGCACACGTTGATGGAGCAGAT
1 GCTGGTGGAGCACACATTGATGGAGCAGAT
147720 GCTGGTGGAG
1 GCTGGTGGAG
147730 AATGTGTTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.24, C:0.16, G:0.40, T:0.20
Consensus pattern (30 bp):
GCTGGTGGAGCACACATTGATGGAGCAGAT
Found at i:150985 original size:14 final size:13
Alignment explanation
Indices: 150966--151009 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
150956 CTCAATTAAT
150966 AAAAAAATGAAAGA
1 AAAAAAATGAAA-A
150980 AAAAAAAT-AAAA
1 AAAAAAATGAAAA
*
150992 AAAACAAAAGAAAA
1 AAAA-AAATGAAAA
151006 AAAA
1 AAAA
151010 TAACCCTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 5 0.19
13 6 0.22
14 16 0.59
ACGTcount: A:0.86, C:0.02, G:0.07, T:0.05
Consensus pattern (13 bp):
AAAAAAATGAAAA
Found at i:151001 original size:23 final size:23
Alignment explanation
Indices: 150966--151012 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
150956 CTCAATTAAT
**
150966 AAAAAAATGAAAGAAAAAAAATA
1 AAAAAAACAAAAGAAAAAAAATA
150989 AAAAAAACAAAAGAAAAAAAATA
1 AAAAAAACAAAAGAAAAAAAATA
151012 A
1 A
151013 CCCTATAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.85, C:0.02, G:0.06, T:0.06
Consensus pattern (23 bp):
AAAAAAACAAAAGAAAAAAAATA
Found at i:152719 original size:16 final size:16
Alignment explanation
Indices: 152698--152740 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
152688 TCCGCTTTTA
152698 TTATTAATTAT-ATATG
1 TTATT-ATTATCATATG
*
152714 TTATTATTATCATATTA
1 TTATTATTATCATA-TG
152731 TTATTATTAT
1 TTATTATTAT
152741 TATCTTACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 5 0.21
16 8 0.33
17 11 0.46
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
TTATTATTATCATATG
Found at i:152792 original size:18 final size:18
Alignment explanation
Indices: 152696--152799 Score: 70
Period size: 18 Copynumber: 5.5 Consensus size: 18
152686 TGTCCGCTTT
*
152696 TATTATTAATTATATATGT-
1 TATTATT-ATAATATAT-TA
*
152715 TATTATTATCATATTATTA
1 TATTATTATAATA-TATTA
* *
152734 TTATTATTATCTTACATATT-
1 -TATTATTA--TAATATATTA
*
152754 TATTATATATAATATAATA
1 TATTAT-TATAATATATTA
152773 TATTATTA-AATTATATTA
1 TATTATTATAA-TATATTA
152791 TATTATTAT
1 TATTATTAT
152800 TTACAAAGCC
Statistics
Matches: 69, Mismatches: 7, Indels: 18
0.73 0.07 0.19
Matches are distributed among these distances:
17 2 0.03
18 28 0.41
19 22 0.32
20 10 0.14
21 4 0.06
22 3 0.04
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (18 bp):
TATTATTATAATATATTA
Found at i:158465 original size:20 final size:21
Alignment explanation
Indices: 158440--158482 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
158430 TCATACCAAG
*
158440 GACGAGAAGTCCATT-ATAAA
1 GACGAGAAGACCATTCATAAA
*
158460 GACGAGAAGACCCTTCATAAA
1 GACGAGAAGACCATTCATAAA
158481 GA
1 GA
158483 TATGAAGACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (21 bp):
GACGAGAAGACCATTCATAAA
Found at i:162408 original size:22 final size:22
Alignment explanation
Indices: 162381--162428 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
162371 ATAAGATTCA
* *
162381 AGCCAAGGAGGCATGAAGATTG
1 AGCCAAGGAGGCATAAAGAATG
*
162403 AGCCAATGAGGCATAAAGAATG
1 AGCCAAGGAGGCATAAAGAATG
162425 AGCC
1 AGCC
162429 TTACAATTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.31, T:0.12
Consensus pattern (22 bp):
AGCCAAGGAGGCATAAAGAATG
Found at i:164855 original size:54 final size:54
Alignment explanation
Indices: 164192--165200 Score: 816
Period size: 54 Copynumber: 18.6 Consensus size: 54
164182 TTCCAGTTTC
* * * * *
164192 ATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAATATGTTCAAGTT-T
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* * * *
164245 CATACTCCCTAGAGAAAGAGGGAGCGAACTCGTTTAAAGAAGATG-TCTGAGTTCT
1 -ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTC-GAGTTCT
* * * * *
164300 ATACTCCCTAGAGAAAGAGGGACCGAACTCGTAAGAAGAAGATGTTCGAGTTCC
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* * * *
164354 ATACTCCCTAGAGAAAGAGGGAGCAAACCTGTTTGAAGAAGATGTCCAAGTTCT
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* * * * *
164408 ATACCCCCTAGAGAAAGAGAGAGCGAACCCGTAAGAAGAAGATGTTCGAGTTCC
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* *
164462 ATACTCCCTAGAGAAAGAGGGAGCGAAA-ACGTTTGAAGAAGATG-TCTGAGTTCT
1 ATACTCCCTAGAGAAAGAGGGAGC-AAACCCGTATGAAGAAGATGTTC-GAGTTCT
* * * *
164516 ATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATATCCGAGTTCT
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* * *
164570 ATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATGTTCGAGTTCC
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* * *
164624 ATACTCCCTAGAGAAATAGGGAGCAAACCCGTTTGAAGAAGATGTCCGAGTTCT
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* * * *
164678 ATACTCCCTAGAGAAAGAGGGAGCGAACTCGTAAGAAGAAGATGTTCGAGTTCC
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* * * * *
164732 ATACTCCCTAGAGAAAGAGGGAACGAACCCATTTGAAGAAGATGTCCGAGTTCT
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* *
164786 ATACTCCCTAGAGAAAGAGGGAGCAAACCTGTAAGAAGAAGATGTTCGAG-TCTT
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTC-T
* * * * **
164840 ATACTCTCT-GAAGAAATAGGAAGCAAACACG-ATTGTTGAAGATTGTTCGAG-TCTT
1 ATACTCCCTAG-AGAAAGAGGGAGCAAACCCGTA-TGAAGAAGA-TGTTCGAGTTC-T
* * * * **
164895 ATACTCTCT-GAAGGAAATAGGGAGCAGACACG-ATTGTTGAAGATTGTTCGAG-TCTT
1 ATACTCCCTAG-A-GAAAGAGGGAGCAAACCCGTA-TGAAGAAGA-TGTTCGAGTTC-T
* * * * * * **
164951 ATACTCTCT-GAAGGAATAGGGAGCAGACAC-AATTGTTGAAGATTGTTCGAG-TCTT
1 ATACTCCCTAG-AGAAAGAGGGAGCAAACCCGTA-TGAAGAAGA-TGTTCGAGTTC-T
* * * * **
165006 ATACTCTCT-GAAGAAATAGGGAGCATACACG-ATTGTTGAAGATTGTTCGAG-TCTT
1 ATACTCCCTAG-AGAAAGAGGGAGCAAACCCGTA-TGAAGAAGA-TGTTCGAGTTC-T
* * * * * **
165061 ATACACTCT-GAAGAAATG-GGGAACAGACACG-ATTGTTGAAGATTGTTCGAGTTCT
1 ATACTCCCTAG-AGAAA-GAGGGAGCAAACCCGTA-TGAAGAAGA-TGTTCGAGTTCT
* * * * ** * * *
165116 ATACTCCCTGAAAGAAAGAAGGAGCTAACCCGTTTTCAGATGATTTTTGAGTTCT
1 ATACTCCCT-AGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
* * *
165171 ATACTCCCTAAAGAAAAAGGGAGCGAACCC
1 ATACTCCCTAGAGAAAGAGGGAGCAAACCC
165201 ATCTTTATGA
Statistics
Matches: 827, Mismatches: 108, Indels: 40
0.85 0.11 0.04
Matches are distributed among these distances:
53 10 0.01
54 547 0.66
55 197 0.24
56 73 0.09
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
ATACTCCCTAGAGAAAGAGGGAGCAAACCCGTATGAAGAAGATGTTCGAGTTCT
Found at i:164900 original size:55 final size:55
Alignment explanation
Indices: 164823--165132 Score: 498
Period size: 55 Copynumber: 5.6 Consensus size: 55
164813 CCTGTAAGAA
* *
164823 GAAGA-TGTTCGAGTCTTATACTCTCTGAAGAAATAGGAAGCAAACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
164877 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAA-GAAATAGGGAGCAGACACGATTGTT
* *
164933 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACAATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
*
164988 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCATACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
* * *
165043 GAAGATTGTTCGAGTCTTATACACTCTGAAGAAATGGGGAACAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
*
165098 GAAGATTGTTCGAGT-TCTATACTCCCTGAAAGAAA
1 GAAGATTGTTCGAGTCT-TATACTCTCTG-AAGAAA
165133 GAAGGAGCTA
Statistics
Matches: 239, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
54 6 0.03
55 174 0.73
56 59 0.25
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
Found at i:165008 original size:166 final size:164
Alignment explanation
Indices: 164823--165127 Score: 522
Period size: 166 Copynumber: 1.8 Consensus size: 164
164813 CCTGTAAGAA
164823 GAAGATGTTCGAGTCTTATACTCTCTGAAGAAATAGGAAGCAAACACGATTGTTGAAGATTGTTC
1 GAAGATGTTCGAGTCTTATACTCTCTGAAGAAATAGGAAGCAAACACGATTGTTGAAGATTGTTC
* *
164888 GAGTCTTATACTCTCTGAAGGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAG-TCTTA
66 GAGTCTTATACACTCTGAA-GAAATAGGGAACAGACACGATTGTTGAAGATTGTTCGAGTTC-TA
*
164952 TACTCTCTGAAGGAATAGGGAGCAGACACAATTGTT
129 TACTCCCTGAAGGAATAGGGAGCAGACACAATTGTT
* *
164988 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCATACACGATTGTTGAAGATTGTT
1 GAAGA-TGTTCGAGTCTTATACTCTCTGAAGAAATAGGAAGCAAACACGATTGTTGAAGATTGTT
*
165053 CGAGTCTTATACACTCTGAAGAAATGGGGAACAGACACGATTGTTGAAGATTGTTCGAGTTCTAT
65 CGAGTCTTATACACTCTGAAGAAATAGGGAACAGACACGATTGTTGAAGATTGTTCGAGTTCTAT
165118 ACTCCCTGAA
130 ACTCCCTGAA
165128 AGAAAGAAGG
Statistics
Matches: 132, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
165 54 0.41
166 78 0.59
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (164 bp):
GAAGATGTTCGAGTCTTATACTCTCTGAAGAAATAGGAAGCAAACACGATTGTTGAAGATTGTTC
GAGTCTTATACACTCTGAAGAAATAGGGAACAGACACGATTGTTGAAGATTGTTCGAGTTCTATA
CTCCCTGAAGGAATAGGGAGCAGACACAATTGTT
Found at i:165454 original size:2 final size:2
Alignment explanation
Indices: 165447--165474 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
165437 TTAGTTATTA
165447 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
165475 GCAAACAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:179265 original size:27 final size:27
Alignment explanation
Indices: 179208--179266 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
179198 TGCTCCGTCG
**
179208 AAAAAAAAGAAAAAAAATAGCAGTTCG
1 AAAAAAAAGAAAAAAAATAGCAGTTAA
*
179235 AAAAAAAAGAAGAAAAAAT-GCTGTTAA
1 AAAAAAAAGAA-AAAAAATAGCAGTTAA
179262 AAAAA
1 AAAAA
179267 GACATGGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.69, C:0.05, G:0.14, T:0.12
Consensus pattern (27 bp):
AAAAAAAAGAAAAAAAATAGCAGTTAA
Found at i:180951 original size:18 final size:19
Alignment explanation
Indices: 180923--180959 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
180913 TCATCTTATT
180923 TTTACTTTAATTACTTTTA
1 TTTACTTTAATTACTTTTA
*
180942 TTTA-TTTAATTATTTTTA
1 TTTACTTTAATTACTTTTA
180960 CTATTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTACTTTAATTACTTTTA
Found at i:186047 original size:13 final size:13
Alignment explanation
Indices: 186011--186058 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
186001 TTATCTTACA
186011 TATT-TATTATA-
1 TATTATATTATAT
* *
186022 TATAATATAATAT
1 TATTATATTATAT
186035 TATTATATTATAT
1 TATTATATTATAT
186048 TATTAT-TTATA
1 TATTATATTATA
186059 AAGCCCGAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
11 3 0.10
12 11 0.35
13 17 0.55
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:186054 original size:11 final size:11
Alignment explanation
Indices: 185976--186054 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
185966 TTATACATGT
*
185976 TATTATTATCA
1 TATTATTATTA
185987 TATTATTATTA
1 TATTATTATTA
*
185998 TCATTA-TCTTA
1 T-ATTATTATTA
*
186009 CA-TATTTATTA
1 TATTA-TTATTA
* *
186020 TATATAATATAA
1 TAT-TATTATTA
186032 TATTATTATATTA
1 TATTA-T-TATTA
186045 TATTATTATT
1 TATTATTATT
186055 TATAAAGCCC
Statistics
Matches: 52, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
9 2 0.04
10 1 0.02
11 26 0.50
12 12 0.23
13 11 0.21
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (11 bp):
TATTATTATTA
Found at i:189772 original size:24 final size:24
Alignment explanation
Indices: 189745--189851 Score: 110
Period size: 24 Copynumber: 4.5 Consensus size: 24
189735 AAACGGAGAT
189745 ATCAGAAATCAAAACAGAATTCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * *
189769 ATCAGATATCAAAATAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAG
*
189793 ATCAGAAATCAGAACAGAATTCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * * *
189817 GTAATG-TATCAGAACAGAATTCA-
1 ATCA-GAAATCAAAACAGAATTCAG
189840 AGTCAGAAATCA
1 A-TCAGAAATCA
189852 GATAAAATAT
Statistics
Matches: 67, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
23 1 0.01
24 65 0.97
25 1 0.01
ACGTcount: A:0.50, C:0.16, G:0.15, T:0.20
Consensus pattern (24 bp):
ATCAGAAATCAAAACAGAATTCAG
Found at i:189827 original size:48 final size:47
Alignment explanation
Indices: 189745--189853 Score: 130
Period size: 48 Copynumber: 2.3 Consensus size: 47
189735 AAACGGAGAT
* * *
189745 ATCAGAAATCAAAACAGAATTCAGATCAGATATCAAAATAGAATCCA
1 ATCAGAAATCAGAACAGAATTCAGATAAGATATCAAAACAGAATCCA
* * *
189792 GATCAGAAATCAGAACAGAATTCAGGTAATG-TATCAGAACAGAATTCA
1 -ATCAGAAATCAGAACAGAATTCAGATAA-GATATCAAAACAGAATCCA
189840 AGTCAGAAATCAGA
1 A-TCAGAAATCAGA
189854 TAAAATATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
47 1 0.02
48 51 0.96
49 1 0.02
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.19
Consensus pattern (47 bp):
ATCAGAAATCAGAACAGAATTCAGATAAGATATCAAAACAGAATCCA
Found at i:192334 original size:18 final size:18
Alignment explanation
Indices: 192311--192357 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
192301 CAACAGTCAA
192311 CGGGTCGGGTCAACAGGT
1 CGGGTCGGGTCAACAGGT
*
192329 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACAGGT
* *
192347 CAGGACGGGTC
1 CGGGTCGGGTC
192358 GGTTCGAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.15, C:0.23, G:0.47, T:0.15
Consensus pattern (18 bp):
CGGGTCGGGTCAACAGGT
Found at i:193043 original size:45 final size:45
Alignment explanation
Indices: 192991--193076 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
192981 TTCCTGCACT
192991 TCTTAAAATGGTCTACCAACTTTGAAATTTTACAATTTAATCAAC
1 TCTTAAAATGGTCTACCAACTTTGAAATTTTACAATTTAATCAAC
* *
193036 TCTTAAAATGGTTTGCCAACTTTGAAATTTTACAATTTAAT
1 TCTTAAAATGGTCTACCAACTTTGAAATTTTACAATTTAAT
193077 TCACCATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (45 bp):
TCTTAAAATGGTCTACCAACTTTGAAATTTTACAATTTAATCAAC
Found at i:198637 original size:12 final size:12
Alignment explanation
Indices: 198620--198644 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
198610 AATTGAGGGG
198620 TTGTTGTATAAT
1 TTGTTGTATAAT
198632 TTGTTGTATAAT
1 TTGTTGTATAAT
198644 T
1 T
198645 GATGTACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (12 bp):
TTGTTGTATAAT
Found at i:199002 original size:24 final size:24
Alignment explanation
Indices: 198975--199020 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
198965 GCATGACATG
198975 GTACATAGATGTTTTATACATCGT
1 GTACATAGATGTTTTATACATCGT
198999 GTACATAGATGTTTTATACATC
1 GTACATAGATGTTTTATACATC
199021 ATCTGGAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.41
Consensus pattern (24 bp):
GTACATAGATGTTTTATACATCGT
Found at i:199752 original size:22 final size:22
Alignment explanation
Indices: 199726--199781 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
199716 TTTTAGAAAG
*
199726 TACTGTAGCAGTTACTT-TAGCT
1 TACTGTAGCAATTA-TTGTAGCT
*
199748 TACTGTAGTAATTATTGTAGCT
1 TACTGTAGCAATTATTGTAGCT
*
199770 TACTGTAACAAT
1 TACTGTAGCAAT
199782 GAACAGTAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 2 0.07
22 27 0.93
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (22 bp):
TACTGTAGCAATTATTGTAGCT
Found at i:206871 original size:22 final size:22
Alignment explanation
Indices: 206843--206898 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
206833 TTTTAGAAAG
*
206843 TACTGTAGCAGTTACTGTAGAT
1 TACTGTAGCAATTACTGTAGAT
* * * *
206865 TATTGTAGTAATTATTGTAGCT
1 TACTGTAGCAATTACTGTAGAT
206887 TACTGTAGCAAT
1 TACTGTAGCAAT
206899 GAACATTAAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (22 bp):
TACTGTAGCAATTACTGTAGAT
Found at i:208599 original size:15 final size:15
Alignment explanation
Indices: 208579--208656 Score: 54
Period size: 15 Copynumber: 5.4 Consensus size: 15
208569 AATGTAGCAA
208579 ATTATTATAAAATAT
1 ATTATTATAAAATAT
* * *
208594 ATTATT-TTAATTGT
1 ATTATTATAAAATAT
** * *
208608 -TTAAAATATAATAA
1 ATTATTATAAAATAT
*
208622 ATGATTAT-AAATAT
1 ATTATTATAAAATAT
*
208636 ATTATTATTAAATAT
1 ATTATTATAAAATAT
208651 ATTATT
1 ATTATT
208657 TTAATATTTT
Statistics
Matches: 44, Mismatches: 16, Indels: 6
0.67 0.24 0.09
Matches are distributed among these distances:
13 3 0.07
14 19 0.43
15 22 0.50
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
ATTATTATAAAATAT
Found at i:208604 original size:43 final size:42
Alignment explanation
Indices: 208556--208646 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 42
208546 AACTATATTC
* * *
208556 TTTAATAGTAAAAAATGTAGCAAATTATTATAAAATATATTAT
1 TTTAATAGTAAAAAATATAACAAATGATTAT-AAATATATTAT
* ** *
208599 TTTAATTGTTTAAAATATAATAAATGATTATAAATATATTAT
1 TTTAATAGTAAAAAATATAACAAATGATTATAAATATATTAT
208641 TATTAA
1 T-TTAA
208647 ATATATTATT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 12 0.30
43 28 0.70
ACGTcount: A:0.49, C:0.01, G:0.05, T:0.44
Consensus pattern (42 bp):
TTTAATAGTAAAAAATATAACAAATGATTATAAATATATTAT
Found at i:208663 original size:13 final size:15
Alignment explanation
Indices: 208625--208660 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
208615 ATAATAAATG
208625 ATTA-TAAATATATT
1 ATTATTAAATATATT
208639 ATTATTAAATATATT
1 ATTATTAAATATATT
208654 ATT-TTAA
1 ATTATTAA
208661 TATTTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTATTAAATATATT
Found at i:214497 original size:16 final size:16
Alignment explanation
Indices: 214472--214518 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
214462 TACATTTAAG
*
214472 TAAAACAAAATAAAAT
1 TAAAATAAAATAAAAT
*
214488 TAAAATAAAATAACAT
1 TAAAATAAAATAAAAT
* *
214504 AAAAATAGAATAAAA
1 TAAAATAAAATAAAA
214519 ATATTACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.19
Consensus pattern (16 bp):
TAAAATAAAATAAAAT
Found at i:216467 original size:16 final size:16
Alignment explanation
Indices: 216446--216488 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
216436 AATATTTTTT
216446 AATAAT-ATCAATAATA
1 AATAATAAT-AATAATA
216462 AATAATAATAATAAT-
1 AATAATAATAATAATA
216477 AATAACTAATAA
1 AATAA-TAATAA
216489 CAAGCAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.20
16 18 0.72
17 2 0.08
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (16 bp):
AATAATAATAATAATA
Found at i:216486 original size:13 final size:12
Alignment explanation
Indices: 216327--216488 Score: 83
Period size: 13 Copynumber: 12.7 Consensus size: 12
216317 TAGTAATTTA
216327 AATAATAATAAT
1 AATAATAATAAT
* *
216339 AAGAACTACTAAT
1 AATAA-TAATAAT
*
216352 AATTAATAACAAT
1 AA-TAATAATAAT
216365 AAATAATAATAAT
1 -AATAATAATAAT
**
216378 AATAATAATTGTT
1 AATAATAA-TAAT
* **
216391 ATTAATAGCAAT
1 AATAATAATAAT
* * *
216403 AAATACTCATAAC
1 -AATAATAATAAT
*
216416 AATTAATGATAAT
1 AA-TAATAATAAT
*
216429 AATAATTAATATTT
1 AATAA-TAATA-AT
**
216443 TTTAATAAT-AT
1 AATAATAATAAT
216454 CAATAATAAATAAT
1 -AATAAT-AATAAT
216468 AATAATAATAAT
1 AATAATAATAAT
216480 AACTAATAA
1 AA-TAATAA
216489 CAAGCAATAA
Statistics
Matches: 109, Mismatches: 29, Indels: 23
0.68 0.18 0.14
Matches are distributed among these distances:
11 1 0.01
12 30 0.28
13 68 0.62
14 10 0.09
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (12 bp):
AATAATAATAAT
Found at i:216500 original size:3 final size:3
Alignment explanation
Indices: 216327--216488 Score: 83
Period size: 3 Copynumber: 50.7 Consensus size: 3
216317 TAGTAATTTA
* * *
216327 AAT AAT AAT AAT AAG AACT ACT AAT AATT AAT AAC AAT AAAT AAT AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AA-T AAT AAT AAT -AAT AAT AAT
** * ** * * *
216375 AAT AAT AAT AATT GTT ATT AAT AGC AAT AAAT ACT CAT AAC AATT AAT
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA-T AAT
* * **
216423 GAT AAT AAT AATT AAT ATTT TTT AAT AAT -AT CAAT AAT AAAT AAT AAT
1 AAT AAT AAT AA-T AAT A-AT AAT AAT AAT AAT -AAT AAT -AAT AAT AAT
216471 AAT AAT AAT AACT AAT AA
1 AAT AAT AAT AA-T AAT AA
216489 CAAGCAATAA
Statistics
Matches: 121, Mismatches: 26, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
2 2 0.02
3 94 0.78
4 25 0.21
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:218124 original size:6 final size:6
Alignment explanation
Indices: 218103--218166 Score: 55
Period size: 5 Copynumber: 10.8 Consensus size: 6
218093 ATTTCATTTA
*
218103 TTTTTC ATTTTCTC TTTTTC -TTTTC TTTTT- TTTTTC TTTTT- TTTCT-
1 TTTTTC -TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
*
218149 TTTTTC TCTTTC TATTTT
1 TTTTTC TTTTTC T-TTTT
218167 TTCTTCAGGT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
5 18 0.38
6 17 0.35
7 11 0.23
8 2 0.04
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTC
Found at i:218131 original size:25 final size:21
Alignment explanation
Indices: 218118--218171 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
218108 CATTTTCTCT
218118 TTTTCTTTTCTTTTTTTTTTC
1 TTTTCTTTTCTTTTTTTTTTC
218139 TTTT-TTTTCTTTTTTCTCTTTC
1 TTTTCTTTTCTTTTTT-T-TTTC
*
218161 TATT-TTTTCTT
1 TTTTCTTTTCTT
218172 CAGGTGTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 11 0.37
21 5 0.17
22 14 0.47
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTCTTTTCTTTTTTTTTTC
Found at i:218138 original size:16 final size:16
Alignment explanation
Indices: 218117--218168 Score: 70
Period size: 16 Copynumber: 3.1 Consensus size: 16
218107 TCATTTTCTC
218117 TTTTTCTTTTCTTTTT
1 TTTTTCTTTTCTTTTT
218133 TTTTTCTTTT-TTTTCT
1 TTTTTCTTTTCTTTT-T
218149 TTTTTCTCTTTCTATTTT
1 TTTTTCT-TTTCT-TTTT
218167 TT
1 TT
218169 CTTCAGGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 4 0.12
16 18 0.56
17 3 0.09
18 4 0.12
19 3 0.09
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTCTTTTCTTTTT
Found at i:218142 original size:9 final size:9
Alignment explanation
Indices: 218117--218159 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
218107 TCATTTTCTC
218117 TTTTTC-TT
1 TTTTTCTTT
*
218125 TTCTT-TTT
1 TTTTTCTTT
218133 TTTTTCTTT
1 TTTTTCTTT
218142 TTTTTCTTT
1 TTTTTCTTT
*
218151 TTTCTCTTT
1 TTTTTCTTT
218160 CTATTTTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
8 10 0.33
9 20 0.67
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:218160 original size:22 final size:22
Alignment explanation
Indices: 218110--218171 Score: 78
Period size: 20 Copynumber: 3.0 Consensus size: 22
218100 TTATTTTTCA
*
218110 TTTTCTC-TT-TTTCTTTTCTT
1 TTTTCTCTTTCTTTTTTTTCTT
218130 TTTT-T-TTTCTTTTTTTTCTT
1 TTTTCTCTTTCTTTTTTTTCTT
*
218150 TTTTCTCTTTCTATTTTTTCTT
1 TTTTCTCTTTCTTTTTTTTCTT
218172 CAGGTGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
19 3 0.08
20 18 0.50
21 1 0.03
22 14 0.39
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (22 bp):
TTTTCTCTTTCTTTTTTTTCTT
Found at i:218170 original size:9 final size:8
Alignment explanation
Indices: 218110--218159 Score: 57
Period size: 8 Copynumber: 6.0 Consensus size: 8
218100 TTATTTTTCA
*
218110 TTTTCTCT
1 TTTTCTTT
218118 TTTTCTTT
1 TTTTCTTT
218126 TCTTT-TTT
1 T-TTTCTTT
218134 TTTTCTTTT
1 TTTTC-TTT
218143 TTTTCTTT
1 TTTTCTTT
218151 TTTCTCTTT
1 TTT-TCTTT
218160 CTATTTTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
7 3 0.08
8 18 0.49
9 16 0.43
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTCTTT
Found at i:219015 original size:33 final size:33
Alignment explanation
Indices: 218953--219015 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
218943 ATCCGAGTCA
*
218953 CCAAATTCATACCATTACCTATCTCTGAGGTAC
1 CCAAATTCATACCATTACCTATATCTGAGGTAC
* * *
218986 CCAAATTCATACCCTTACCTCTATTTGAGG
1 CCAAATTCATACCATTACCTATATCTGAGG
219016 CAAAAAAGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (33 bp):
CCAAATTCATACCATTACCTATATCTGAGGTAC
Found at i:219672 original size:27 final size:28
Alignment explanation
Indices: 219642--219701 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
219632 AGAGGACGAG
*
219642 GAAAGAAA-AGAATAAAAAG-AGAAGAA
1 GAAAGAAAGAGAACAAAAAGAAGAAGAA
*
219668 TGAAA-AAAGAGAACAAAAAGAAGAATAA
1 -GAAAGAAAGAGAACAAAAAGAAGAAGAA
219696 GAAAGA
1 GAAAGA
219702 GAACATATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
26 3 0.11
27 18 0.64
28 7 0.25
ACGTcount: A:0.72, C:0.02, G:0.22, T:0.05
Consensus pattern (28 bp):
GAAAGAAAGAGAACAAAAAGAAGAAGAA
Found at i:219674 original size:16 final size:14
Alignment explanation
Indices: 219643--219704 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
219633 GAGGACGAGG
*
219643 AAAGAAAAGAATAA
1 AAAGAGAAGAATAA
219657 AAAGAGAAGAATGAA
1 AAAGAGAAGAAT-AA
*
219672 AAA-AG-AGAA-CA
1 AAAGAGAAGAATAA
219683 AAA-AGAAGAATAA
1 AAAGAGAAGAATAA
219696 GAAAGAGAA
1 -AAAGAGAA
219705 CATATCAAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
11 6 0.15
12 4 0.10
13 5 0.12
14 16 0.40
15 9 0.22
ACGTcount: A:0.73, C:0.02, G:0.21, T:0.05
Consensus pattern (14 bp):
AAAGAGAAGAATAA
Found at i:219705 original size:24 final size:26
Alignment explanation
Indices: 219656--219706 Score: 79
Period size: 24 Copynumber: 2.0 Consensus size: 26
219646 GAAAAGAATA
219656 AAAAGAGAAGAATGAAAAAAGAGAAC
1 AAAAGAGAAGAATGAAAAAAGAGAAC
*
219682 AAAA-AGAAGAAT-AAGAAAGAGAAC
1 AAAAGAGAAGAATGAAAAAAGAGAAC
219706 A
1 A
219707 TATCAAGTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 12 0.50
25 8 0.33
26 4 0.17
ACGTcount: A:0.71, C:0.04, G:0.22, T:0.04
Consensus pattern (26 bp):
AAAAGAGAAGAATGAAAAAAGAGAAC
Found at i:223246 original size:23 final size:23
Alignment explanation
Indices: 223216--223312 Score: 115
Period size: 23 Copynumber: 4.2 Consensus size: 23
223206 GAGGGTTCTT
223216 TGTGGTCCTTCGGGACAAATCTA
1 TGTGGTCCTTCGGGACAAATCTA
* *
223239 TGTGGTCCTTCGGGACAACTATA
1 TGTGGTCCTTCGGGACAAATCTA
* ** *
223262 TATGGTCCTTTAGGACAAAACTA
1 TGTGGTCCTTCGGGACAAATCTA
*
223285 TGTGGTCATTCGGGA-AAATTCTA
1 TGTGGTCCTTCGGGACAAA-TCTA
223308 TGTGG
1 TGTGG
223313 AACTTCAGTG
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
22 3 0.05
23 57 0.95
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (23 bp):
TGTGGTCCTTCGGGACAAATCTA
Found at i:224351 original size:258 final size:258
Alignment explanation
Indices: 223721--224887 Score: 1449
Period size: 258 Copynumber: 4.5 Consensus size: 258
223711 TTTTATATAT
* * *
223721 TTTGAAAAATGAGAAAGAAATTTTAAAAGTTTTTCATTTAGTATTTTCAGAAAATGAAATTTTTG
1 TTTGAAAAATGAGAAAGCAATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATGAAATTTTTG
* ** *
223786 AAAGGTAAGAAAGCGATTTCCAAATTGTT-TTACCTAGTAAACTATTTCTGAAATTGGTAAGTCA
66 AAAAGTAAGAAAGCGATTTCCAAATT-TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
* * * * *
223850 TTCGGGCCATAAGTAAGTCTTTAGAGCATGATGATTAAATCTGTTGGTTCATCTATCAGTCTTTC
130 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATC-CTTGGGTCATCTATCAGTATTTC
* * * * * *
223915 AAGCAAGATGATAAGTCTTTCGGGCCATTTATAAGACCTTTGGGTAAGATGCTTTC--AT-ATAA
194 GAGCAAGATGATAAGTCCTTCAGGCCATCTATAAGACCTTTGGGCAATATGCTTTCATATGATAA
223977 TTTGAAAAAATGAGAAAGCAATTTTCAAAGTTTCTCATTTAGTATTTTTC-GAAAATG-AATGTT
1 TTTG-AAAAATGAGAAAGCAATTTTCAAAGTTTCTCATTTAGTA-TTTTCAGAAAATGAAAT-TT
* * *
224040 TTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACATAGTAAACTATTTCCAAAATTGGTAAGT
63 TTGAAAAGTAAGAAAGCGATTTCCAAATTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGT
* * * * * *
224105 CCTTCGGGCCATTAGTAAGCCTTTTGAGCATGATGATTAAATCCTTAGAGTCATCTGTCAATATT
128 CCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTT-GGGTCATCTATCAGTATT
* * * * * * *
224170 TCGAGCAACATTATAAGTCCTTCATGCCATATATAACACCATGGGGCAATATGCTTTCATATGAT
192 TCGAGCAAGATGATAAGTCCTTCAGGCCATCTATAAGACCTTTGGGCAATATGCTTTCATATGAT
224235 AA
257 AA
* ** * *
224237 TTTGAAAAATAAGAAA-TTATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTTTT
1 TTTGAAAAATGAGAAAGCAATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATGAAATTTTTG
* * * *
224301 AAAAGTAAGAAAGCGATTTCGAAATTTTCTTACCTGGTAAACTTTTTCCAAAATTGGTAAGCCCT
66 AAAAGTAAGAAAGCGATTTCCAAATTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
* * * * * *
224366 TTGGGTCATCAATAAGTATTTCGAGAATGATGATTAAATCATTCGGGTCATCTATCAGTATTTCG
131 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTT-GGGTCATCTATCAGTATTTCG
* ** *
224431 AGCAAGATGATAAGTCCTTCAGGCCACCTATAAGACCTTAAGGCAATATGCTTTCATAAGATAA
195 AGCAAGATGATAAGTCCTTCAGGCCATCTATAAGACCTTTGGGCAATATGCTTTCATATGATAA
* * *
224495 TTTGAAAGATGAGAAAGCGATTTTCAAAGTTTCTCATTTATTATTTTCAGAAAATGAAATTTTTC
1 TTTGAAAAATGAGAAAGCAATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATGAAATTTTT-
* * * *
224560 G-AAAGTAAAAAAGTGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGCAAGTCC
65 GAAAAGTAAGAAAGCGATTTCCAAATTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
* **
224624 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATAATTAAATCCTTGGGTCATCTATCAGCCTTTCG
130 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTGGGTCATCTATCAGTATTTCG
** * ** *
224689 AGCAAG-TGGATAAGTGTTTCGGGCTGTCTATAAGACCTTTGGGCAATATTCTTTCATATGATAA
195 AGCAAGAT-GATAAGTCCTTCAGGCCATCTATAAGACCTTTGGGCAATATGCTTTCATATGATAA
* * *
224753 TTTAAAAAATGAGAAAGCGACTTTCAAAGTTT-TACA-TTACGTATTTTTCAGAAAATGAAATTT
1 TTTGAAAAATGAGAAAGCAATTTTCAAAGTTTCT-CATTTA-GTA-TTTTCAGAAAATGAAATTT
* * * *
224816 TTGAAAAGTAAGAAAGCGAATTCCAAATTTTATTACCTAGTAAACTATTTCAAAAATTGATAAG-
63 TTGAAAAGTAAGAAAGCGATTTCCAAATTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGT
*
224880 CCCTCGGG
128 CCTTCGGG
224888 GTCATATGCC
Statistics
Matches: 782, Mismatches: 112, Indels: 32
0.84 0.12 0.03
Matches are distributed among these distances:
256 11 0.01
257 209 0.27
258 329 0.42
259 225 0.29
260 8 0.01
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (258 bp):
TTTGAAAAATGAGAAAGCAATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATGAAATTTTTG
AAAAGTAAGAAAGCGATTTCCAAATTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
TCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTGGGTCATCTATCAGTATTTCGA
GCAAGATGATAAGTCCTTCAGGCCATCTATAAGACCTTTGGGCAATATGCTTTCATATGATAA
Done.