genome.fa.s7598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007598.1 Hibiscus syriacus cultivar Beakdansim tig00021967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152705

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2800--2833	2	17.0	2	100	0	68	50	0	0	50	1.00
5692--5758	29	2.2	29	81	5	71	40	2	4	52	1.37
18145--18172	11	2.5	11	100	0	56	42	0	0	57	0.99
21052--21079	11	2.5	11	100	0	56	42	0	0	57	0.99
36847--36893	24	2.0	24	83	8	60	51	6	0	42	1.27
38133--38168	2	18.0	2	100	0	72	50	0	0	50	1.00
41996--42043	24	2.0	24	84	8	62	54	2	0	43	1.12
44660--44695	18	2.0	18	88	0	54	47	0	2	50	1.15
44700--44735	2	18.0	2	100	0	72	50	0	0	50	1.00
45551--45616	24	2.8	24	81	6	80	56	16	12	15	1.68
45552--45613	12	5.3	11	72	14	52	56	16	12	14	1.68
45575--45654	24	3.3	24	77	10	83	48	17	13	20	1.80
49879--50138	58	4.4	58	75	10	199	29	21	10	38	1.87
49877--50138	117	2.2	117	87	0	371	29	21	10	37	1.87
50609--50679	19	3.7	19	94	0	124	25	29	16	28	1.97
53375--53407	12	2.8	12	90	4	50	42	3	0	54	1.15
60457--60642	65	2.9	64	78	7	189	25	19	24	30	1.98
60483--60692	65	3.3	63	78	12	178	25	18	24	31	1.98
63369--63413	23	2.0	23	86	8	65	46	2	2	48	1.26
67523--67619	43	2.3	43	96	0	176	31	23	27	16	1.96
70474--70518	22	2.1	21	84	12	56	48	26	4	20	1.68
72672--72710	2	19.5	2	94	0	69	51	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77535--77572	20	1.9	20	84	10	51	52	2	2	42	1.29
83269--83326	18	3.2	18	75	20	57	46	1	3	48	1.29
83536--83579	22	2.2	19	84	12	52	45	4	2	47	1.35
86061--86086	2	13.0	2	100	0	52	50	0	0	50	1.00
94958--95065	24	4.5	24	80	2	119	18	12	16	51	1.75
98806--98847	2	21.0	2	100	0	84	50	0	0	50	1.00
104155--104203	20	2.3	22	79	17	66	28	0	44	26	1.54
107006--107058	8	6.0	9	82	12	58	32	0	1	66	1.03
107006--107060	17	3.1	19	80	17	64	32	0	1	65	1.03
107006--107058	3	18.0	3	78	18	58	32	0	1	66	1.03
107006--107058	20	2.7	20	85	8	65	32	0	1	66	1.03
108074--108098	13	1.9	13	100	0	50	24	12	8	56	1.62
108615--108684	33	2.1	34	82	12	83	34	0	1	64	1.03
109216--109266	21	2.5	21	84	9	61	23	7	1	66	1.28
111614--111654	7	5.9	7	83	11	57	14	17	9	58	1.62
115812--116031	114	1.9	114	93	0	377	33	14	21	30	1.93
118562--118616	22	2.5	22	81	0	74	34	10	10	43	1.75
119448--120011	75	7.5	76	93	2	940	23	20	21	34	1.97
120138--120193	14	3.9	15	81	15	57	32	0	1	66	1.03
120137--120194	3	20.0	3	79	13	68	32	0	1	65	1.03
120137--120194	17	3.6	16	82	13	66	32	0	1	65	1.03
120137--120193	22	2.6	21	78	13	62	31	0	1	66	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121869--121910	21	2.0	22	86	13	63	54	0	2	42	1.13
121866--121910	23	2.0	22	83	12	56	55	0	2	42	1.12
123755--123794	21	2.0	21	85	9	57	55	2	0	42	1.13
126278--126313	2	18.0	2	100	0	72	50	0	0	50	1.00
133011--133141	24	5.5	24	82	4	140	27	12	19	40	1.88
133086--133136	23	2.2	24	82	3	59	33	9	19	37	1.85
140374--140399	2	13.0	2	100	0	52	50	0	0	50	1.00
146646--146671	2	13.0	2	100	0	52	50	0	0	50	1.00
147324--147371	10	4.6	10	77	10	51	56	2	2	39	1.23
150238--150272	18	1.9	18	88	0	52	37	5	2	54	1.39
150243--150305	27	2.4	25	81	7	72	41	3	3	52	1.33
151739--151772	16	2.1	16	88	0	50	32	2	0	64	1.08

Tables:   1

The End!