Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007599.1 Hibiscus syriacus cultivar Beakdansim tig00021982_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42129
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Found at i:777 original size:160 final size:160
Alignment explanation
Indices: 476--1022 Score: 700
Period size: 160 Copynumber: 3.4 Consensus size: 160
466 TACAAATAGG
* *
476 CACTAAGTGTGCAATTAACG-AATTCATCATATGTTGATGAATAACCGTTTCGACACTAAGTGTG
1 CACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG
*
540 CAATTCACGAAATTCATCATAGTTGATGAATAACCGTTTCGGCACTATGTGTGCAATTCACGGAA
66 CAATTCACGAAATTCATCATAGTTGATGAATAACCGTTTCAGCACTATGTGTGCAATTCACGGAA
605 TTCATCATATGTTGATGAATAACCATTTCGA
131 TTCATCATATGTTGATGAATAACC-TTTCGA
* * * * * *
636 CACTATGTGTACAATTCACGGAATTCATCATATATTGATGAATAACCATTTCGGCACTATGTGTG
1 CACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG
*
701 CAATTCAC-AGAATTCATCAT-GTTGATGAATAATCGTTTCAGCACTATGTGTGCAATTCACGGA
66 CAATTCACGA-AATTCATCATAGTTGATGAATAACCGTTTCAGCACTATGTGTGCAATTCACGGA
*
764 ATTCATCATATGTTGATGAATAACCGTTTCGG
130 ATTCATCATATGTTGATGAATAACC-TTTCGA
*
796 TACTAAGTGTGCAATTCACGAAATTCATCATGA-GTTGATGAATAACCGTTTCGGCACTAAGTGT
1 CACTAAGTGTGCAATTCACGAAATTCATCAT-ATGTTGATGAATAACCGTTTCGGCACTAAGTGT
* * ** *
860 GCAATTCACGTAATTCATCATGAGTT-ATGAATAACCG-TACATGCACTATGTG-AAAATTCACA
65 GCAATTCACGAAATTCATCAT-AGTTGATGAATAACCGTTTCA-GCACTATGTGTGCAATTCACG
* * * *
922 GAATTCATCATGA-GTTGATGAATAATCGTACAA
128 GAATTCATCAT-ATGTTGATGAATAACCTTTCGA
* * * * *
955 GCACTATGTGTGCAAATCACGAAATTCATCATGA-GTTGATGAACT-ACCGTATAGGCACTACGT
1 -CACTAAGTGTGCAATTCACGAAATTCATCAT-ATGTTGATGAA-TAACCGTTTCGGCACTAAGT
1018 GTGCA
63 GTGCA
1023 TCTTAATAAA
Statistics
Matches: 342, Mismatches: 35, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
159 2 0.01
160 256 0.75
161 81 0.24
162 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (160 bp):
CACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG
CAATTCACGAAATTCATCATAGTTGATGAATAACCGTTTCAGCACTATGTGTGCAATTCACGGAA
TTCATCATATGTTGATGAATAACCTTTCGA
Found at i:780 original size:106 final size:103
Alignment explanation
Indices: 474--1022 Score: 631
Period size: 106 Copynumber: 5.1 Consensus size: 103
464 ATTACAAATA
* * *
474 GGCACTAAGTGTGCAATTAACGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAAGTGT
1 GGCACTATGTGTGCAATTCACGAATTCATC--ATGTTGATGAATAACCGTTTCG-CACTATGTGT
539 GCAATTCACGAAATTCATCATAGTTGATGAATAACCGTTTC
63 GCAATTCACGAAATTCATCATAGTTGATGAATAACCGTTTC
*
580 GGCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCATTTCGACACTATGTG
1 GGCACTATGTGTGCAATTCAC-GAATTCATC--ATGTTGATGAATAACCGTTTCG-CACTATGTG
* * * *
645 TACAATTCACGGAATTCATCATATATTGATGAATAACCATTTC
62 TGCAATTCACGAAATTCATCATA-GTTGATGAATAACCGTTTC
*
688 GGCACTATGTGTGCAATTCACAGAATTCATCATGTTGATGAATAATCGTTTCAGCACTATGTGTG
1 GGCACTATGTGTGCAATTCAC-GAATTCATCATGTTGATGAATAACCGTTTC-GCACTATGTGTG
*
753 CAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
64 CAATTCACGAAATTCATCATA-GTTGATGAATAACCGTTTC
* * *
794 GGTACTAAGTGTGCAATTCACGAAATTCATCATGAGTTGATGAATAACCGTTTCGGCACTAAGTG
1 GGCACTATGTGTGCAATTCACG-AATTCATCAT--GTTGATGAATAACCGTTTC-GCACTATGTG
* *
859 TGCAATTCACGTAATTCATCATGAGTT-ATGAATAACCG-TAC
62 TGCAATTCACGAAATTCATCAT-AGTTGATGAATAACCGTTTC
* ** * *
900 ATGCACTATGTG-AAAATTCACAGAATTCATCATGAGTTGATGAATAATCG-TACAAGCACTATG
1 -GGCACTATGTGTGCAATTCAC-GAATTCATCAT--GTTGATGAATAACCGTTTC--GCACTATG
* * *
963 TGTGCAAATCACGAAATTCATCATGAGTTGATGAACT-ACCGTATA
60 TGTGCAATTCACGAAATTCATCAT-AGTTGATGAA-TAACCGTTTC
*
1008 GGCACTACGTGTGCA
1 GGCACTATGTGTGCA
1023 TCTTAATAAA
Statistics
Matches: 390, Mismatches: 39, Indels: 26
0.86 0.09 0.06
Matches are distributed among these distances:
105 3 0.01
106 185 0.47
107 101 0.26
108 100 0.26
109 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (103 bp):
GGCACTATGTGTGCAATTCACGAATTCATCATGTTGATGAATAACCGTTTCGCACTATGTGTGCA
ATTCACGAAATTCATCATAGTTGATGAATAACCGTTTC
Found at i:1013 original size:54 final size:53
Alignment explanation
Indices: 474--1022 Score: 657
Period size: 54 Copynumber: 10.3 Consensus size: 53
464 ATTACAAATA
* *
474 GGCACTAAGTGTGCAATTAACG-AATTCATCATATGTTGATGAATAACCGTTTC
1 GGCACTATGTGTGCAATTCACGAAATTCATCATA-GTTGATGAATAACCGTTTC
* *
527 GACACTAAGTGTGCAATTCACGAAATTCATCATAGTTGATGAATAACCGTTTC
1 GGCACTATGTGTGCAATTCACGAAATTCATCATAGTTGATGAATAACCGTTTC
* *
580 GGCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCATTTC
1 GGCACTATGTGTGCAATTCACGAAATTCATCATA-GTTGATGAATAACCGTTTC
* * * * *
634 GACACTATGTGTACAATTCACGGAATTCATCATATATTGATGAATAACCATTTC
1 GGCACTATGTGTGCAATTCACGAAATTCATCATA-GTTGATGAATAACCGTTTC
*
688 GGCACTATGTGTGCAATTCAC-AGAATTCATCAT-GTTGATGAATAATCGTTTC
1 GGCACTATGTGTGCAATTCACGA-AATTCATCATAGTTGATGAATAACCGTTTC
* *
740 AGCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
1 GGCACTATGTGTGCAATTCACGAAATTCATCATA-GTTGATGAATAACCGTTTC
* *
794 GGTACTAAGTGTGCAATTCACGAAATTCATCATGAGTTGATGAATAACCGTTTC
1 GGCACTATGTGTGCAATTCACGAAATTCATCAT-AGTTGATGAATAACCGTTTC
* * *
848 GGCACTAAGTGTGCAATTCACGTAATTCATCATGAGTT-ATGAATAACCG-TAC
1 GGCACTATGTGTGCAATTCACGAAATTCATCAT-AGTTGATGAATAACCGTTTC
* ** * *
900 ATGCACTATGTG-AAAATTCAC-AGAATTCATCATGAGTTGATGAATAATCG-TAC
1 -GGCACTATGTGTGCAATTCACGA-AATTCATCAT-AGTTGATGAATAACCGTTTC
* * * *
953 AAGCACTATGTGTGCAAATCACGAAATTCATCATGAGTTGATGAACT-ACCGTATA
1 -GGCACTATGTGTGCAATTCACGAAATTCATCAT-AGTTGATGAA-TAACCGTTTC
*
1008 GGCACTACGTGTGCA
1 GGCACTATGTGTGCA
1023 TCTTAATAAA
Statistics
Matches: 441, Mismatches: 41, Indels: 27
0.87 0.08 0.05
Matches are distributed among these distances:
52 70 0.16
53 114 0.26
54 254 0.58
55 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (53 bp):
GGCACTATGTGTGCAATTCACGAAATTCATCATAGTTGATGAATAACCGTTTC
Found at i:1022 original size:214 final size:214
Alignment explanation
Indices: 495--1022 Score: 705
Period size: 214 Copynumber: 2.5 Consensus size: 214
485 TGCAATTAAC
* *
495 GAATTCATCATATGTTGATGAATAACCGTTTC-GACACTAAGTGTGCAATTCACGAAATTCATCA
1 GAATTCATCATA-GTTGATGAATAATCGTTTCAG-CACTATGTGTGCAATTCACGAAATTCATCA
* *
559 TAGTTGATGAATAACCGTTTCGGCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAA
64 TAGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAA
* * *
624 TAACCATTTCGACACTATGTGTACAATTCACGGAATTCATCATATATTGATGAATAACCATTTCG
129 TAACCATTTCGACACTAAGTGTACAATTCACGGAATTCATCATATATTGATGAATAACCAGTACG
**
689 GCACTATGTGTGCAATTCACA
194 GCACTATGTGTAAAATTCACA
*
710 GAATTCATCAT-GTTGATGAATAATCGTTTCAGCACTATGTGTGCAATTCACGGAATTCATCATA
1 GAATTCATCATAGTTGATGAATAATCGTTTCAGCACTATGTGTGCAATTCACGAAATTCATCATA
*
774 TGTTGATGAATAACCGTTTCGGTACTAAGTGTGCAATTCACGAAATTCATCATGA-GTTGATGAA
66 -GTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGAAATTCATCAT-ATGTTGATGAA
* * * * *
838 TAACCGTTTCGGCACTAAGTGTGCAATTCACGTAATTCATCATGA-GTT-ATGAATAACC-GTAC
129 TAACCATTTCGACACTAAGTGTACAATTCACGGAATTCATCAT-ATATTGATGAATAACCAGTAC
*
900 ATGCACTATGTG-AAAATTCACA
193 -GGCACTATGTGTAAAATTCACA
* *
922 GAATTCATCATGAGTTGATGAATAATCG-TACAAGCACTATGTGTGCAAATCACGAAATTCATCA
1 GAATTCATCAT-AGTTGATGAATAATCGTTTC-AGCACTATGTGTGCAATTCACGAAATTCATCA
* * *
986 TGAGTTGATGAACT-ACCGTATAGGCACTACGTGTGCA
64 T-AGTTGATGAA-TAACCGTTTCGGCACTAAGTGTGCA
1023 TCTTAATAAA
Statistics
Matches: 279, Mismatches: 24, Indels: 21
0.86 0.07 0.06
Matches are distributed among these distances:
212 21 0.08
213 70 0.25
214 173 0.62
215 15 0.05
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (214 bp):
GAATTCATCATAGTTGATGAATAATCGTTTCAGCACTATGTGTGCAATTCACGAAATTCATCATA
GTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATA
ACCATTTCGACACTAAGTGTACAATTCACGGAATTCATCATATATTGATGAATAACCAGTACGGC
ACTATGTGTAAAATTCACA
Found at i:6440 original size:13 final size:13
Alignment explanation
Indices: 6422--6478 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
6412 TGTATATAAC
6422 ATGTATTGG-TTCA
1 ATGTA-TGGCTTCA
*
6435 ATGTATGGCTTAA
1 ATGTATGGCTTCA
* *
6448 ATGCT-TTGCTTTA
1 ATG-TATGGCTTCA
6461 ATGTATGGCTTCA
1 ATGTATGGCTTCA
6474 ATGTA
1 ATGTA
6479 CATAATCAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
12 4 0.11
13 31 0.86
14 1 0.03
ACGTcount: A:0.25, C:0.11, G:0.21, T:0.44
Consensus pattern (13 bp):
ATGTATGGCTTCA
Found at i:8165 original size:2 final size:2
Alignment explanation
Indices: 8158--8194 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8148 AAACTGAAAT
8158 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8195 TTAAAAATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10319 original size:18 final size:18
Alignment explanation
Indices: 10296--10331 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
10286 ATGGACTTGT
10296 GTCATGAGTTGGTAGATA
1 GTCATGAGTTGGTAGATA
10314 GTCATGAGTTGGTAGATA
1 GTCATGAGTTGGTAGATA
10332 ATTTTGATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.33, T:0.33
Consensus pattern (18 bp):
GTCATGAGTTGGTAGATA
Found at i:12321 original size:980 final size:979
Alignment explanation
Indices: 6915--13360 Score: 8244
Period size: 976 Copynumber: 6.6 Consensus size: 979
6905 TGAGAATGTT
*
6915 AACGTAAAAGAAGAC-TTC-ATATAGAATGAGTATTATGTAGCATT-AATTATTGATATAGAAAC
1 AACGTAAAAGAAGACATTCGA-AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAAC
* *
6977 ATTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCGACAAAATGGAAGTTGATGAGTGAAGATGA
65 GTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGA
7042 GAAA-AACCTTTT-AACAATTGTCGAAGAAATTGAACGAAGAACTTAAAGAGTGGAGAAGTGTAC
130 GAAAGAACCTTTTAAACAATTGTC---G-AA--GAAC-----A--TAAAGAGTGGAGAAGTGTAC
* *
7105 AAGAAAATATGGTATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAACTTTTTTAT
182 AAGAAAATAAGGTATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAATTTTTTTAT
* * * *
7170 AGAAGTTCTATAAAAATACTGACATTATATATAT-TTTTAAAAAATATAGGAAGACTTGACATGG
247 AGAAGTTCTATAAAAAGATTAACATTATATATATATTTAAAAAAATATAGGAAGACTTGACATGG
* * * *
7234 TGTAGTCTGATTAGAGTGTATGAATTGATGAAAGAGTTGAAGGGAAAGAAAACGAAAATGGAGTA
312 TGTAGCCTGATTAGAGTGTATGAATTGATGGAA-AGTTGAAGGGAAAGAAAAAGAAAATGGTGTA
7299 AGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAG
376 AGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAG
*
7364 TTGGTATATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGG
441 TTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGG
* * * * ** *
7429 GGTTGTTGACAGGCGCAAAGCTTGAGTTGTCTAGCTTTGTACCTTAAGA-AGGCATCATGTTCCA
506 GGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAA-ACAATCATCATGTTCCG
* * * *
7493 AAATCCAATCCATGCCTAAGATCATGTTTAACTCTCTAACTAGTAGCTCTATTAGATCGACTGGG
570 AAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGGG
* * * *
7558 AAAGTCTGGCCTTGAATTTTGACTGGGCGTCAACGGACGACCTTGTCGACAATAACATCTAACCC
635 AAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCC
* * * *
7623 TAGAAGACTAGACACTCGAACTTATATCTCTAAATCCTCTGCTGGAAGGTTTCTTTCTCGAACTA
700 TAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTAGAAGGTTTCTTTCTCGAACTA
* *
7688 AGTCATAACATATATAGGAGTGTGTGGACTCTAAATTTACTAACGTTGGAACTAGAATAGAAAAC
765 AGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAAC
* *
7753 ACGATAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGG--CGAATGACAAACTGG
830 ACGGTAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTGG
* * ** * * *
7816 CGTGAGGCTACTCTAGGCTCTAAACTGATAAAAGATCTAGCAATGCCCCTATTGTGCTATCTGAA
895 CATGAGGCTACTCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGC-AACTGAA
7881 AACAAAACTCCCA-CTCTAGA
959 AACAAAACTCCCACCTCTAGA
* *
7901 AACGTAAAAGAAGACATTCGTAGAGAATGA-TATTATGT--CATTAAATTATTGAAATAGAAACG
1 AACGTAAAAGAAGACATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
* * *
7963 TTTATGGTTAAGTGTAGGTGAAAGAAAAAATGTCGACAAAATGG-AGTTGATGAGTGAAGATGAG
66 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
* *
8027 AAATAACATTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGT---A-AAAA-AAGGTA
131 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA
* * * *
8087 TTTTAAGAGTTT-TTGAATAAATAAAT-GTTGAACTTGTAAA-CTTTTTATAGAAGTTCTTTAAA
196 TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAATTTTTTTATAGAAGTTCTATAAA
* * *
8149 AACTGAAATTATATATATATATATATATATATATATATATATATATTTAAAAATAGAAAGACTCG
261 AA--G--ATTA-ACAT-TATATATATAT-T-TA-A-A-A-A-A-A--T----ATAGGAAGACTTG
* * *
8214 ACATGGT-TAGTCTAATTAGAGTGTACGAATTGATGGAAGAGTTGAAGGG-AA-AAAAA-AAAAT
306 ACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAA-AGTTGAAGGGAAAGAAAAAGAAAAT
* * * *
8275 GGTGTACAG-G-AATAGAGTTTGGATTACTGATTGGAGTATTGAACCAA-TAGCATGGACTCGTG
370 GGTGTA-AGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTG
* *
8337 TCATGAGTTGGTAGATAATTTTGATATAGAAAATTCTCGAGTTTGGTTCAATCAATATAAATTTA
434 TCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTA
* * *
8402 ATCTGTGGATCGTTGACAGGGGCATAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCAT
499 ATCTGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCAT
* * *
8467 GTTCTGAAAGCCAATCCATG-CTAAGATCATGTCGAACTCTCTAAATGGCAGCTCTATT-GAATC
564 GTTCCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAG-ATC
* * *
8530 GACT-GGAAAGTCTGGCATTGAATTTTGACTGGGCATCGACGGAGGACCATGTCAACAAGAACAT
628 GACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACAT
* * *
8594 CTAACCCTAGAGGACTAGACACTCAAAATTATATCTCTAAATCCTCAGTTGGAAGGTTTCTTTCT
693 CTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTAGAAGGTTTCTTTCT
* *
8659 AGAACTAAGTCA-AA-ACATATAGGA-TGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAAT
758 CGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAAT
* * * *
8721 AGAAAACATGGTAATGTACATGAGTTCACATTAACTACGTCCCACTCCTCCTAGGCTCGAATGAC
823 AGAAAACACGGTAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGAC
* * * * *
8786 ATATTAGCATGAGGCTACTCTAGGCTCTAAACCGACCATAGTTCTAGTAATGCCCCTACTGTGCT
888 ATACTGGCATGAGGCTACTCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGC-
*
8851 ATA-TGAAAACAAAACTCGCACCTCTAGA
952 A-ACTGAAAACAAAACTCCCACCTCTAGA
* *
8879 AACGT-AAAGAAAGACATTAGAAGATAATGAGTATTATGTAGCATTAAATTATTGATATAGAAAC
1 AACGTAAAAG-AAGACATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAAC
* **
8943 ATTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATTTAAGTTGATGAGTGAAGATGA
65 GTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGA
* * *
9008 GAAAGAACCTTTTAAACAATTTTTGAAGAACATATAGA-TGGAGAAGTGTACAAGAAAATAAGGT
130 GAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGT
* *
9072 ATTTTAAGAGTTT-CTAAAAAAATAAATAGTTGAACTTGTAGACTTTTTTTATAGAAGTTCTATA
195 ATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTA-AATTTTTTTATAGAAGTTCTATA
* ** * *
9136 AAAAGACTGGCATTATATATATATTT-AAAAAATATAGGAAGACTCGACATGGTGTAGCATGATT
259 AAAAGATTAACATTATATATATATTTAAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATT
* * * *
9200 AGAGTGTAGGAATTGATTGAAGAGTTGATGGGAAA-TAAAAGAAAATGGTGTAAGCA-AAATAGA
324 AGAGTGTATGAATTGATGGAA-AGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAG-AGAAATAGA
* * **
9263 GTTTGGATTCTTGATTGGAGTAACGAACCAATTCAAATGGACTTGTGTCATGAGTTGGTAGATAA
387 GTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAA
* * **
9328 TTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATAAATATAAATTTAATCTAGGAATCGTTGACA
452 TTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCGTTGACA
* * * * * *
9393 TGGGCATAGCATGTGTTGTATAGCTTTGCACCTT-AACAAGCATCATGTTCCGAAAGCCAATCCA
517 GGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCCGAAAGCCAATCCA
* * * * * *
9457 TTCCTAATATCATGTTGAACGCTTTAAATGGTAGCTCTATTAGATCAATTGGGAAAGTCTGGCCT
582 TGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGGGAAAGTCTGGCCT
* * * *
9522 TGAATTATT-TCTGGGCATCGATGGAGGACCTTGTCGACAAGAACATCTGACCCTAGAGGATTAG
647 TGAATT-TTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAG
* * * * * *
9586 ACACTGAAACTTATATCTCTAAATCCTCGGCTAGAATGTTTCTTTCTTGAACTAAGTTATAATAT
711 ACACTCAAACTTATATCTCTAAATCCTCAGCTAGAAGGTTTCTTTCTCGAACTAAGTCATAACAT
* * * * *
9651 ATATAGGATTATGTGGACTCTAGAACTACTAACGTTAGAACTAGAATAG-AAACACAGTAATGTA
776 ATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTA
* * * * ** * *
9715 CCTGAGATCACATCACCTATGTCCCACTCCACCTAGGCTTAAATGACATACTGACGTGAGGCTAC
841 CATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTGGCATGAGGCTAC
* **
9780 TATAGGCTCTAAACCATAAACCGACCACAGATCTAGCAATGCCCCTACTGTGGTACTTGAAAACA
906 TCTAGG--CT----C-TAAACCGACCACAGATCTAGCAATGCCCCTACTGTGCAAC-TGAAAACA
9845 AAACTCCCACCTCTAGA
963 AAACTCCCACCTCTAGA
* * * *
9862 AATGTAAAAGAAGTCATTTGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
1 AACGTAAAAGAAGACATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
* * *
9927 TTTATGGTTAATTGTAGGTGAGAGAAAATACGTG--AACAAAATGGAAGTTGACGAGTGAATATG
66 TTTATGGTTAATTGTAGGTGAGAGAAAA-A-GTGTCGACAAAATGGAAGTTGATGAGTGAAGATG
* * *
9990 AGAAATAACCTTTTAAACAATTGTCTAAGAACATAAAGAGCGGAGAAGTGTACAAGAAAATAAGG
129 AGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGG
**
10055 TATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAACATTTTTATAGAAGTTCTATA
194 TATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAATTTTTTTATAGAAGTTCTATA
* * * *
10120 AAAAGACTGACATTATATATATATTTTAAAAAAATATGGGAAGACTCGACATGGTGTAGCCTGAT
259 AAAAGATTAACATTATATATATA-TTTAAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGAT
* * *
10185 TAGAGTGTATGAATTAATGGAAAAGTTGAAGGGAAAGAAAAAGAAAATGATATAAGAGAAATAGA
323 TAGAGTGTATGAATTGATGG-AAAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGA
*
10250 GTTTGGAGTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAG
387 GTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGA-------C------T--T-G-T-G
* * *
10315 TCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCAAGTTATGTTCAATCTATATAAATTTA
434 TCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTA
* * * *
10380 ATCTGGGGGTTGTTGACAGGGGCAAAGCTTGAGTTATCTAGCTTTGCACCTCAAACAATCATCAT
499 ATCTGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCAT
** * * *
10445 GTTGTGAAAGCCAATGCATGCCTAAGATCATGTTTAACTCTCTAAATGGTAGCTATATTAGATCG
564 GTTCCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCG
* * * * *
10510 ACTGGGAAAGTGTGGCATTGAATTTTAACTGGGCATCGACAGAGGACCTTGTCGACAAGAATATC
629 ACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATC
* *
10575 T-A---TTGAGGACTAGACAATCAAACTTATATCTCTAAATCCTCAGC-AGGAAGGTTTCTTTCT
694 TAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTA-GAAGGTTTCTTTCT
* * * * * * * *
10635 CGAACTAAGTCATAACATATATAGGAGTGTTTGAACTTTAAATCTATTATCATTAGAACTAGAAT
758 CGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAAT
* * * * * *
10700 AGAAAACACGGTAATATACCTAAGATCACATTAGCTACATCCCACTCCTCCTAGGCTCGAATGAA
823 AGAAAACACGGTAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGAC
* * * * *
10765 ATACTGGCGTGAGGCTACTCTAAGCTCTAAACCGGCCACAGATATAGCAATGCCCCTACTATGCT
888 ATACTGGCATGAGGCTACTCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGC-
* * *
10830 ATCTGAAAACAAAACTGCCATCTCTAGA
952 AACTGAAAACAAAACTCCCACCTCTAGA
* * * * * *
10858 AATGTAAAAGAAGACATTCGTAGAGAACGAGTATTATGTAGCATTAAATTA---AAACAGACACG
1 AACGTAAAAGAAGACATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
** * * * *
10920 TTTATGGTTAATTGTAAATGAGACAAAAAGTGTTGACAAAATGGAAGTTGATGAGTAAAAATGAG
66 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
* **
10985 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGATAAGTGTACAAGAAAATAAGCAA
131 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA
* * * * *
11050 TTTTAAGAGTTTTCTGAATAAACATATAGGTGAACTTGTAAACTTTTTTTTATAGAAGTTCTATA
196 TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAA--TTTTTTTATAGAAGTTCTATA
11115 AAAAGACTT-ACATTATATATATATATTTTAAAAAAAATATATAGGAAGACTTGACATGGTGTAG
259 AAAAGA-TTAACA-T-TATATATATA-TTT--AAAAAA-ATATAGGAAGACTTGACATGGTGTAG
*
11179 CCTGATTA-AGGTGTATGAATTGATAGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAG
317 CCTGATTAGA-GTGTATGAATTGATGGAA-AGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAG
* * * *
11243 AAATAAATTTTGGATTATTGATTGGAGTAATGAATCAATTCGCATGGACTTGTGTCATGAGTTGA
380 AAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGG
* * * * *
11308 TAGATAATATTGATGTAGAAAATTCTGGAGTTAGGTTCAATCATTCTAAATTTAATCTAGGGGTC
445 TAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTC
* * * * *
11373 ATTGACAGGGGCAGAGCTTGAATTGTCAAGCTTTGCATCTTAAACAATCATCATGTTCCAAAAGC
510 GTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCCGAAAGC
* * * **
11438 CAATCCTTGCCTAAAATCATGTTGAACTCTCTAAATTGTAGCTCTATTAGATCGACTGACAAAGT
575 CAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGGGAAAGT
* * * * *
11503 CTGGCCTTAAATTTTGACTGGGCATCGATGGAGGACCTTGTTGACAATAACATCTAACCCTAAAG
640 CTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAG
* * *
11568 AACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTAGAAGGTTTCTTTCTTGAATTAAGTCA
705 GACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTAGAAGGTTTCTTTCTCGAACTAAGTCA
* * * *
11633 TAACATATATAGGAGTGTGTGGACTCTAGATATACTAATGTTGGAACTAGAATAGAAAA-ATGAT
770 TAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGT
* *
11697 AATGTACATGAGATCACATCAGCTACGTCCCGCTCCTCC-ATGGCTCAAATGACATACTGGCATG
835 AATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTA-GGCTCGAATGACATACTGGCATG
* *
11761 AGG-TAACTCTAGGCTCTAAACTGACCACAGATCTAGAAATGCCCCTACTGTGCAACATGAAAAC
899 AGGCT-ACTCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGCAAC-TGAAAAC
*
11825 AAAACTCCTACCTCTAGA
962 AAAACTCCCACCTCTAGA
* * * *
11843 AACATAAAAGAAGACATTCGAAGAGAATGAGTATTATATAGAATTAAATTATTGATATAGAAACA
1 AACGTAAAAGAAGACATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
* * * *
11908 TTTCTGGTTAATTGTAAGTAAGAGAAAAAGTGTTGACAAAATGGAAGTTGATGAGTGAAGATGAG
66 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
* *
11973 AAAGAACCTTTTAAACAATCGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCA
131 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA
* *
12038 TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTATAAATATTTTTATAGAAGTTCTATAAA
196 TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAATTTTTTTATAGAAGTTCTATAAA
* * *
12103 AAGATTAACATTATATATATATTTAAAAAAATATAGGAAGACTTGAAATGGTGTAGCTTGATTAT
261 AAGATTAACATTATATATATATTTAAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAG
* * *
12168 AATGTATGAATTGTTGGAAACGTTGAAGGGAAAGAAAAACAAAATGGTGTAAGAGAAATAGAGTT
326 AGTGTATGAATTGATGGAAA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
* * *
12233 TGGATTGTTGATTGGAGTAATGAAACAATTCGCATGGACTTGTGTCATGAGTTGGTATATAATTT
390 TGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTT
* * * * **
12298 TCATGTAGAAAATTCTCGAGTTAGGATCAATCAATATTAATTTAATATGGGGGTTATTGACAGGG
455 TGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCGTTGACAGGG
* * * *
12363 GCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAATAATAATCATGTTCTGAAAGCCCATCCATGC
520 GCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCCGAAAGCCAATCCATGC
* *
12428 CTAAGATCATGTTGAACTCTCTAAATAGTATCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGA
585 CTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGA
* *
12493 ATTTTGACTGGGAATCGACGGAGGACCTTGTCGACAAGAACATAT-A---TAGAGGACTAGACAC
650 ATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACAC
* * *
12554 TCGAACTTATATCTCTAAATCCT-TGAC-AGGAAGGTTTCTTTCTCAAACTAAGTCATAACATAT
715 TCAAACTTATATCTCTAAATCCTCAG-CTA-GAAGGTTTCTTTCTCGAACTAAGTCATAACATAT
* * ** *
12617 ATAGGAGTGTGTGGACTCTAGATCTACTAACGATGGAACTAGAATATAAAACACGGTAATACACC
778 ATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACA
* * * *
12682 TGAGATCACATCAGCTACGTCCCACTCCTCTTAGGCTTGAATGAAATACTGG-AGGGAGGCTACT
843 TGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTGGCA-TGAGGCTACT
* * * * **
12746 CTAGGCTCTAAACCGACCATAGATATAGCAATTCCCCTACAGTGCTATTTGAAAA-AAAACTCCC
907 CTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGC-AACTGAAAACAAAACTCCC
12810 ACCTCTAGA
971 ACCTCTAGA
* * * *
12819 AACGTAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAAATATTGATATAGAAACG
1 AACGTAAAAGAAGACATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
* *** *
12884 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGGTTTTTATGAGTGAAGATGAG
66 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
* * * * *
12949 AAATAATCTTTTAAACAATTGTTGAAGAACATAAAGAGTGGAGAAGTGTATAAGAAAATAAGGCA
131 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA
* * * * *
13014 TTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAATTTTTTTTTCTAGAAGTTATATAA
196 TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAA-ATTTTTTTATAGAAGTTCTATAA
* * *
13079 AAAG-TATAACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA-T
260 AAAGAT-TAACATTATATATATATTTAAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATT
* * * *
13142 AAAGTGTATGAATTGATGGAGGAGTTGATGGGAAAGAAAAAGAAAATGGTGTAAGAGAATTAGAG
324 AGAGTGTATGAATTGATGGA-AAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAG
* ** * *
13207 TTTGGATTATTGATTGTAGTAATGAACCAATTCATATAGACATGTGTCATGAGTTGGTAGATAAT
388 TTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAAT
* *
13272 TTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGATAG
453 TTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCGTTGACAG
*
13337 GGGCAGAGGTTGAGTTGTCTAGCT
518 GGGCAGAGCTTGAGTTGTCTAGCT
13361 CTTTTAGATC
Statistics
Matches: 4759, Mismatches: 563, Indels: 286
0.85 0.10 0.05
Matches are distributed among these distances:
965 22 0.00
966 14 0.00
967 12 0.00
968 36 0.01
969 42 0.01
970 12 0.00
971 20 0.00
972 64 0.01
973 175 0.04
974 122 0.03
975 95 0.02
976 629 0.13
977 304 0.06
978 161 0.03
979 53 0.01
980 511 0.11
981 116 0.02
982 293 0.06
983 220 0.05
984 132 0.03
985 313 0.07
986 285 0.06
987 87 0.02
988 164 0.03
989 22 0.00
991 3 0.00
992 1 0.00
993 157 0.03
994 1 0.00
995 28 0.01
996 106 0.02
997 16 0.00
999 9 0.00
1000 124 0.03
1001 3 0.00
1002 105 0.02
1003 73 0.02
1004 1 0.00
1005 106 0.02
1006 122 0.03
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (979 bp):
AACGTAAAAGAAGACATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA
TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAATTTTTTTATAGAAGTTCTATAAA
AAGATTAACATTATATATATATTTAAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAG
AGTGTATGAATTGATGGAAAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTT
GGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTT
GATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCGTTGACAGGGG
CAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCCGAAAGCCAATCCATGCC
TAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAA
TTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACT
CAAACTTATATCTCTAAATCCTCAGCTAGAAGGTTTCTTTCTCGAACTAAGTCATAACATATATA
GGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACATGA
GATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTGGCATGAGGCTACTCTAG
GCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGCAACTGAAAACAAAACTCCCACCTC
TAGA
Found at i:15292 original size:979 final size:975
Alignment explanation
Indices: 13356--15995 Score: 3709
Period size: 974 Copynumber: 2.7 Consensus size: 975
13346 TTGAGTTGTC
** * * * * *
13356 TAGCTCTTTTAGATCGACTGGGAAAGTTTGGCTTTGAATTTTGAAAAGGCATCGACAGAGGACCT
1 TAGCTCTAATAGATAGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
* * * *
13421 TGTCGACATGAACATCTAACCCTAAAGGACTAGACACTCTAACTTATATCTCTAAATCCTTGGCT
66 TGTCGACAAGAACATCTAA--CTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGG-T
* * *
13486 -GGAAAGTTTCTTTCTCGAACT-AAGTCATAACATATAAAGGAGAGTGTGGACTCTAGATCTACT
128 AGGAAGGTTTCTTTCTCGAA-TAAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACT
* ** *
13549 AACGTTGGAACTAGAATATAAAACATGGTAATGTACATGAGATCACATCAGCTACATCCCACTCC
192 AACGTTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACATCCCACTCC
* * * *
13614 TCCTAGGCTCAAATGACACACTAGCGTAAGGCTACTCTAGGCTCTTAACCAGG-CACA-ATACTA
257 TCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTC-TAAACAGGCCACAGAT-CTA
* * * * * *
13677 GTAATTCCCTTATTGTCCTATATGAAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATT
320 GCAATTCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATT
* * * * * **
13742 TGAAGAGAATAAGTATTATGCAACATTTAATTATTGATATA-AAAATTATTATGG-TAATTGTAG
385 CGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT-TTATGGTTAATTGTAG
* ** * *
13805 GTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAA-CTTTTTAAAT
449 GTGAGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATC-TTTTAAAC
* *
13869 AATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT-AGAGTTT-CTG
513 AATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTG
* *
13932 AATAAATAAATAGTTGAACTTGTAAACTTTTTTTATAGAAGATCTATAT-AAAGACTGACATTAT
578 AATAAATAAATAGATGAACTTGTAAACTTTTTTTCTAGAAG-T-TATATAAAAGACTGACA-T-T
* ** * *
13996 ATATATATTTTTAAAAAATATAGGAATTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTG
639 ATATATA-TTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTG
* *
14061 ACGGAAGAGTTTGAGGGAAAAAAAGAAAATGGTGTAAGAGAAATATAGTTTGGATTATTGATTGG
703 ACGGAAGAGTTTGAGGGAAAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGG
* * *
14126 AGTAATGAACCAATTCACATAGAATTGTGTCATGAGTTGGTAGGTAATTTTGATGTAGAAAATTC
768 AGTAATGAACCAATTCACATAGAATTGTGTCATGAGTTGGTAGATAATTTTAATATAGAAAATTC
* *
14191 TCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCATTAACTAGGGCAGATCTTGAGTTG
833 TCGAGTTAGGTTCAATCAATATAAATTTAATATGGGGGTCATTAACTAGGGCAGAGCTTGAGTTG
* * * *
14256 TCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAACCCAATCCATTCTTAAGATCATGTTGA
898 TCTAGCTTTACACCTTAAACAAGCATCATGTTCTAAAACCCAATCCATGCCTAAGATCATGTTGA
*
14321 ACTCTCTAAATGG
963 ACTCTCTAAATAG
* * * * * *
14334 TAGCTCTAATAGATAGGCTGGGAAAGTCTGGCCTCGAATTTTGAGTTGGCATCGACGGAAGACGT
1 TAGCTCTAATAGATAGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
*
14399 TGTCGACAAGAACTTCTGAACTTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTA
66 TGTCGACAAGAACATCT-AAC-TAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTA
* * *
14464 GGAAGGTTTCTTTCTCGAATAAAATAATAAAATATATAGGAGTGTGTGGACTCTAGATCTACTAA
129 GGAAGGTTTCTTTCTCGAATAAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAA
* * *
14529 TGTTTGAACTAGAATAGAAAACACAGTAATGTACCTGATATCACATCAGCTACATCCCACTCCTC
194 CGTTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTC
* * *
14594 CTAGGCTCGAATGACATACT-GACATGAGGTTACTCTAGGCTCTAAACTGGCCACAGATCTAGCA
259 CTAGGCTCGAATGACATACTAG-CGTGAGGCTACTCTAGGCTCTAAACAGGCCACAGATCTAGCA
* * *
14658 ATGCCCCTACTATGCTATATGAAAACAAAACTCCCAGCTCTAGAAACGTAAAAGAAGACATTCGT
323 ATTCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGA
14723 AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGA
388 AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGA
* * * *
14788 GAGAAAAAGTATCGAGATATTAGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTG
453 GAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTG
*
14853 TCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTTAATAA
518 TCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAA
*
14918 ATAAGTAGATGAACTTGTAAACTTTTTCTTCTAGAAGTTATATAAAAGACTGACATTATATATAT
583 ATAAATAGATGAACTTGTAAACTTTTT-TTCTAGAAGTTATATAAAAGACTGACATTATATATAT
* *
14983 TTTAAAAGATATAAGAACACTTGACATGGTGTAGCCTGA-TAAAGTGTATGAATTGATGGAAGAG
647 TTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGACGGAAGAG
15047 -TTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGAGTAAT
712 TTTG-AGGG-AA-AAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGAGTAAT
* * * *
15111 GAACCAATTCGCATGGACTTGTGTTATGAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAGT
774 GAACCAATTCACATAGAATTGTGTCATGAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAGT
* * *
15176 TAGGTTCAATCAATATTAATTTAATATGGGGGTCGTTGAC-AGGGGCAGAGCTTGAGTTGTCTAG
839 TAGGTTCAATCAATATAAATTTAATATGGGGGTCATTAACTA-GGGCAGAGCTTGAGTTGTCTAG
* * * *
15240 CTTTACATCTTAAACAA-TAGTCATGTTCTAAAAGCCAATCCATGCCTAAGATCATTTTGAACTC
903 CTTTACACCTTAAACAAGCA-TCATGTTCTAAAACCCAATCCATGCCTAAGATCATGTTGAACTC
15304 TCTAAATAG
967 TCTAAATAG
* * * * * * * *
15313 TATCTCTACTAGATCGACTAGGAAAGTCTAGCCTTGAATTCTGACTGGGCATCGACGGAGGACCT
1 TAGCTCTAATAGATAGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
* **
15378 TGTCGACAAGAACATCT-A-TAGAGAACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGG
66 TGTCGACAAGAACATCTAACTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGG
15441 AAGGTTTCTTTCT-GAA-ACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAA
131 AAGGTTTCTTTCTCGAATA--AAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAA
* *
15504 CGTTGGAACTAGAATAGAAAAC-CCGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTC
194 CGTTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTC
* * * * * *
15568 TTAGGCTTGAATGACATACTAGCGGGAGGCTACTCTAGGCTCTAAACAGACCATAGATATAGCAA
259 CTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACAGGCCACAGATCTAGCAA
* * * * * * *
15633 TTCCCCTACAATGATATTTGAAAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCA
324 TTCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGAA
*
15698 GAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTCAATTGTAGGTGAG
389 GAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAG
* *
15763 AGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAATATGAGAAATAATATTTTAAACAATTGT
454 AGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGT
* * *
15828 CGAAGAACATAAAGAGTGGAGTAGTGTACATGAAAATAAGGCATTTTAAGAGTTTCCTGAATATA
519 CGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAA
*
15893 TAAATAGGTGAACTTGTAAACTTTTTTTTCTAGAAGTTATATAAAAGACTGACATTATATATATT
584 TAAATAGATGAACTTGTAAAC-TTTTTTTCTAGAAGTTATATAAAAGACTGACATTATATATATT
* *
15958 TTAAAAGTTATAGGAACACTTGACATGGTATAGCCTGA
648 TTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA
15996 CATTGGAGTA
Statistics
Matches: 1482, Mismatches: 157, Indels: 50
0.88 0.09 0.03
Matches are distributed among these distances:
973 1 0.00
974 428 0.29
975 122 0.08
976 3 0.00
977 38 0.03
978 399 0.27
979 425 0.29
980 14 0.01
981 44 0.03
982 8 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (975 bp):
TAGCTCTAATAGATAGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
TGTCGACAAGAACATCTAACTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGG
AAGGTTTCTTTCTCGAATAAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACG
TTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCCT
AGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACAGGCCACAGATCTAGCAATT
CCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGAAGA
GAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAG
AAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCG
AAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAATA
AATAGATGAACTTGTAAACTTTTTTTCTAGAAGTTATATAAAAGACTGACATTATATATATTTTA
AAAGATATAGGAACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGACGGAAGAGTTTG
AGGGAAAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGAGTAATGAACCAA
TTCACATAGAATTGTGTCATGAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAGTTAGGTTC
AATCAATATAAATTTAATATGGGGGTCATTAACTAGGGCAGAGCTTGAGTTGTCTAGCTTTACAC
CTTAAACAAGCATCATGTTCTAAAACCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATAG
Found at i:15865 original size:974 final size:972
Alignment explanation
Indices: 13356--15995 Score: 3726
Period size: 979 Copynumber: 2.7 Consensus size: 972
13346 TTGAGTTGTC
** * * * *
13356 TAGCTCTTTTAGATCGACTGGGAAAGTTTGGCTTTGAATTTTGAAAAGGCATCGACAGAGGACCT
1 TAGCTCTAATAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
* * * * *
13421 TGTCGACATGAACATCTAACCCTAAAGGACTAGACACTCTAACTTATATCTCTAAATCCTTGGCT
66 TGTCGACAAGAACATCTAA--CTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCA
* * *
13486 GGAAAGTTTCTTTCTCGAACTAAGTCATAACATATAAAGGAGAGTGTGGACTCTAGATCTACTAA
129 GGAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAA
* ** *
13551 CGTTGGAACTAGAATATAAAACATGGTAATGTACATGAGATCACATCAGCTACATCCCACTCCTC
194 CGTTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTC
* * * * * *
13616 CTAGGCTCAAATGACACACTAGCGTAAGGCTACTCTAGGCTCTTAACCAGGCACA-ATACTAGTA
259 CTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTC-TAAACAGCCACAGATA-TAGCA
* * * * * *
13680 ATTCCCTTATTGTCCTATATGAAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTTGA
322 ATTCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGA
* * * * **
13745 AGAGAATAAGTATTATGCAACATTTAATTATTGATATA-AAAATTATTATGGTAATTGTAGGTGA
387 AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT-TTATGGTAATTGTAGGTGA
* ** * *
13809 GAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACTTTTTAAATAATTG
451 GAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAA-TTTTTAAACAATTG
* *
13874 TCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT-AGAGTTT-CTGAATAA
515 TCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAA
* *
13937 ATAAATAGTTGAACTTGTAAACTTTTTTTATAGAAGATCTATAT-AAAGACTGACATTATATATA
580 ATAAATAGATGAACTTGTAAACTTTTTTTCTAGAAG-T-TATATAAAAGACTGACA-T-TATATA
* ** * *
14001 TATTTTTAAAAAATATAGGAATTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTGACGGA
641 TA-TTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGACGGA
* *
14066 AGAGTTTGAGGGAAAAAAAGAAAATGGTGTAAGAGAAATATAGTTTGGATTATTGATTGGAGTAA
705 AGAGTTTGAGGGAAAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGAGTAA
* * *
14131 TGAACCAATTCACATAGAATTGTGTCATGAGTTGGTAGGTAATTTTGATGTAGAAAATTCTCGAG
770 TGAACCAATTCACATAGAATTGTGTCATGAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAG
* *
14196 TTAGGTTCAATCAATATAAATTTAATCTGGGGGTCATTAACTAGGGCAGATCTTGAGTTGTCTAG
835 TTAGGTTCAATCAATATAAATTTAATATGGGGGTCATTAACTAGGGCAGAGCTTGAGTTGTCTAG
* * * *
14261 CTTTGCACCTTAAACAAGCATCATGTTCTGAAACCCAATCCATTCTTAAGATCATGTTGAACTCT
900 CTTTACACCTTAAACAAGCATCATGTTCTAAAACCCAATCCATGCCTAAGATCATGTTGAACTCT
*
14326 CTAAATGG
965 CTAAATAG
* * * * * * *
14334 TAGCTCTAATAGATAGGCTGGGAAAGTCTGGCCTCGAATTTTGAGTTGGCATCGACGGAAGACGT
1 TAGCTCTAATAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
* *
14399 TGTCGACAAGAACTTCTGAACTTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTA
66 TGTCGACAAGAACATCT-AAC-TAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCA
* * *
14464 GGAAGGTTTCTTTCTCGAA-TAAAATAATAAAATATATAGGAGTGTGTGGACTCTAGATCTACTA
129 GGAAGGTTTCTTTCTCGAACT-AAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTA
* * *
14528 ATGTTTGAACTAGAATAGAAAACACAGTAATGTACCTGATATCACATCAGCTACATCCCACTCCT
193 ACGTTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCT
* * * *
14593 CCTAGGCTCGAATGACATACT-GACATGAGGTTACTCTAGGCTCTAAACTGGCCACAGATCTAGC
258 CCTAGGCTCGAATGACATACTAG-CGTGAGGCTACTCTAGGCTCTAAAC-AGCCACAGATATAGC
* *
14657 AATGCCCCTACTATGCTATATGAAAACAAAACTCCCAGCTCTAGAAACGTAAAAGAAGACATTCG
321 AATTCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCG
*
14722 TAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTG
386 AAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGG-TAATTGTAGGTG
* * * *
14787 AGAGAAAAAGTATCGAGATATTAGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATT
450 AGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAAT-TTTTAAACAATT
*
14852 GTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTTAATA
514 GTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATA
*
14917 AATAAGTAGATGAACTTGTAAACTTTTTCTTCTAGAAGTTATATAAAAGACTGACATTATATATA
579 AATAAATAGATGAACTTGTAAACTTTTT-TTCTAGAAGTTATATAAAAGACTGACATTATATATA
* *
14982 TTTTAAAAGATATAAGAACACTTGACATGGTGTAGCCTGA-TAAAGTGTATGAATTGATGGAAGA
643 TTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGACGGAAGA
15046 G-TTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGAGTAA
708 GTTTG-AGGG-AA-AAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGAGTAA
* * * *
15110 TGAACCAATTCGCATGGACTTGTGTTATGAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAG
770 TGAACCAATTCACATAGAATTGTGTCATGAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAG
* * *
15175 TTAGGTTCAATCAATATTAATTTAATATGGGGGTCGTTGAC-AGGGGCAGAGCTTGAGTTGTCTA
835 TTAGGTTCAATCAATATAAATTTAATATGGGGGTCATTAACTA-GGGCAGAGCTTGAGTTGTCTA
* * * *
15239 GCTTTACATCTTAAACAA-TAGTCATGTTCTAAAAGCCAATCCATGCCTAAGATCATTTTGAACT
899 GCTTTACACCTTAAACAAGCA-TCATGTTCTAAAACCCAATCCATGCCTAAGATCATGTTGAACT
15303 CTCTAAATAG
963 CTCTAAATAG
* * * * * * *
15313 TATCTCTACTAGATCGACTAGGAAAGTCTAGCCTTGAATTCTGACTGGGCATCGACGGAGGACCT
1 TAGCTCTAATAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
* *
15378 TGTCGACAAGAACATCT-A-TAGAGAACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGG
66 TGTCGACAAGAACATCTAACTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCAGG
15441 AAGGTTTCTTTCT-GAAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAAC
131 AAGGTTTCTTTCTCG-AACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAAC
* * *
15505 GTTGGAACTAGAATAGAAAAC-CCGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCT
195 GTTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCC
* * *
15569 TAGGCTTGAATGACATACTAGCGGGAGGCTACTCTAGGCTCTAAACAGACCATAGATATAGCAAT
260 TAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACAG-CCACAGATATAGCAAT
* * * * * * *
15634 TCCCCTACAATGATATTTGAAAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAG
324 TCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGAAG
15699 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTCAATTGTAGGTGAGA
389 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGT-AATTGTAGGTGAGA
*
15764 GAAAAAGTATCGACAAAATGGATTTTGATGAGTGAATATGAGAAATAATATTTTAAACAATTGTC
453 GAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAAT-TTTTAAACAATTGTC
* * *
15829 GAAGAACATAAAGAGTGGAGTAGTGTACATGAAAATAAGGCATTTTAAGAGTTTCCTGAATATAT
517 GAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAT
*
15894 AAATAGGTGAACTTGTAAACTTTTTTTTCTAGAAGTTATATAAAAGACTGACATTATATATATTT
582 AAATAGATGAACTTGTAAAC-TTTTTTTCTAGAAGTTATATAAAAGACTGACATTATATATATTT
* *
15959 TAAAAGTTATAGGAACACTTGACATGGTATAGCCTGA
646 TAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA
15996 CATTGGAGTA
Statistics
Matches: 1479, Mismatches: 159, Indels: 52
0.88 0.09 0.03
Matches are distributed among these distances:
973 2 0.00
974 424 0.29
975 124 0.08
976 4 0.00
977 35 0.02
978 400 0.27
979 425 0.29
980 13 0.01
981 44 0.03
982 8 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (972 bp):
TAGCTCTAATAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
TGTCGACAAGAACATCTAACTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCAGG
AAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACG
TTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCCT
AGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACAGCCACAGATATAGCAATTC
CCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGAAGAG
AATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTAATTGTAGGTGAGAGAA
AAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATTTTTAAACAATTGTCGAAG
AACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAATAAAT
AGATGAACTTGTAAACTTTTTTTCTAGAAGTTATATAAAAGACTGACATTATATATATTTTAAAA
GATATAGGAACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGACGGAAGAGTTTGAGG
GAAAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGAGTAATGAACCAATTC
ACATAGAATTGTGTCATGAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAGTTAGGTTCAAT
CAATATAAATTTAATATGGGGGTCATTAACTAGGGCAGAGCTTGAGTTGTCTAGCTTTACACCTT
AAACAAGCATCATGTTCTAAAACCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATAG
Found at i:20437 original size:978 final size:980
Alignment explanation
Indices: 15997--21908 Score: 8225
Period size: 980 Copynumber: 6.0 Consensus size: 980
15987 ATAGCCTGAC
*
15997 ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
16062 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCTTG
66 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCTTG
* *
16127 AGTTGTCTAGCTTTGCACCTTAAATAAGCATCATGTTCCGAAATCCAATCCATGCCTAAGATCAT
131 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCAT
* * *
16192 GTTGATCTCTCTAAATGGTACCTCTTTTAGATCAACTGGGAAAGTCTGGCCTTGAGTTTTGAAAG
196 GTTGAACTCTCTAAATGGTAGCTCTTTTAGATCAACTGGGAAAGTCTGGCCTTGAATTTTGAAAG
*
16257 GGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACAATCAAACTTAT
261 GGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCAAACTTAT
* * * *
16322 ATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCAAACAAAATCATAGCATATATAGGAGTGTGT
326 ATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGAGTGT
* * * ** *
16387 GGACTCTGGATCTACTAGCGTTGGAACTAGAATAGAAAAAACGGTAATGTACCGGATATCACATC
391 GGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGATCACATC
* * * *
16452 AGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTAACATAAGGCTACTCTAGGCTCTAAA-
456 AGCTACATCCCACTCCTCCTAGGCTCAAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAAC
* *
16516 CAGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCAAGAAAC
521 CA-GCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAGAAAC
* *
16581 GTAAACA-AAGACATTCGTAGAGAATGAGTATTATCTAGCATTAAATTATTGATATAAAAACGTT
585 GTAAA-AGAAGACATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATAAAAACGTT
* * *
16645 TAAGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAATTGGAAGTTGATGAGTGAAGATGAGAA
649 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAA
* * *
16710 AGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATT
714 AGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATT
* * * * *
16775 TTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTATAAA-TATTTT-TAGAAGTTCTATAAAAA
779 TT-AGAGTTT-CTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATATAAA
* * * * * *
16838 GATTGAC-GT-TATATAT-ATTTTAAAAAATATAGGAAGACTTGACATAGTGTAGCCTAATTAGA
842 GACTGACATTATATATATAATTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGATTAGA
* * *
16900 GTGTATGAATT-ATTGGAA-ACATTGAAGGGAAAGAAAAAGAAATTGGTGTATGAGAAATAGAGT
907 GTGTATGAATTGA-TGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGT
*
16963 TTGGATTGTTG
970 TTGGATTATTG
** *
16974 ATTGGAGTAATGAAATAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTAATGTAGAA
1 ATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * * *
17039 AATTATCGAGTTAGGTTCAATCAATATTAATTTAATATGGGGGTCGTTGACAGTGGTAGAGTTTG
66 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCTTG
* * *
17104 AGTTGTCTAGCTTTGCACCTTAAA-AATTCATCATGTTCTGAAAGCCAATCTATGCCTAAGATCA
131 AGTTGTCTAGCTTTGCACCTTAAACAA-GCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCA
* * * * * * **
17168 TGTTGAACTCTCTAAATAGTATCTCTATTAGATCGACTGGGAAAATCTGGCCTTGATTTTTGACT
195 TGTTGAACTCTCTAAATGGTAGCTCTTTTAGATCAACTGGGAAAGTCTGGCCTTGAATTTTGAAA
* * *
17233 GGGCATCGATGGAGGACCTTGTCGACAAGAACATCT-A---TAGAGGACTAGACACTCGAACTTA
260 GGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
** * * *
17294 TATCTCTAAATCCTCGACAGGAATGTTTCTTTCTCAAACTAAGTCATAACATATATA-G-GAGTG
325 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGAGTG
*
17357 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACTTGAGATCACAT
390 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGATCACAT
* * ** * *
17422 TAGCTACATCCCACTCCTCTTAGGCTTGAATGAAATACTGGCG-GTAGGCTACTCTAGGCTCTAA
455 CAGCTACATCCCACTCCTCCTAGGCTCAAATGACATACTAGCGTG-AGGCTACTCTAGGCTCTAA
** * * * * * * *
17486 ACC-GACCTTAGATATAGAAATTCCCCTACTGTACTATTTG-AAA-AAAACTCCCATCTCTAGAA
519 ACCAG-CCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAGAA
* * * ** * * * * *
17548 ACATAAAAGAAGTCAATCACAAAGAATAAGTATTATGTAGCATTAAATTATTTATATAGAAACGT
583 ACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATAAAAACGT
* * **
17613 TTATGGTTAATTTTAGGTGAGAGAAAAAGTATCGACATAATGGATTTTGATGAGTGAAGATGAGA
648 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
* * *
17678 AATAATCTTTTAAACAATTGTCGAAGAACATAAAGAATAGAGAAGTGTACAAGAGAATAAGGTAT
713 AAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTAT
*
17743 TTTAGAGTTTCTGAATAAATATATAGTTGAACTTGTAAACTTTTTTTATAGAAGATCTATATAAA
778 TTTAGAGTTTCTGAATAAATAAATAGTTGAACTTGTAAAC-TTTTTTATAGAAGATCTATATAAA
* *
17808 GACTGACATTATATATATATATTTTTTAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTTA
842 GACTGACATTATATATATA-A-TTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGATTA
*
17873 GAGTGTATGAATTGATGGAAGAGTTGAA-GG---G--AAA-AAAATGGTATAAGAGAAATAGAGT
905 GAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGT
17931 TTGGATTATTG
970 TTGGATTATTG
* * * *
17942 ATTGGAGTAATGAGCCAATTCTCATGGACATGTGTCATGAGTTGGTAGATACTTTTGATGTAGAA
1 ATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * *
18007 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTAGGGATCGTTGGCAAGGGTAGAGCTTG
66 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCTTG
* * **
18072 AGTTGTCTAGCTTTGCACCTTCAACAATCATCATGTTTTGAAAGCCAATCCATGCCTAAGATCAT
131 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCAT
* *
18137 ATTGATCTCTCTAAATGGTAGCTCTTTTAGATCAACTGGGAAAGTCTGGCCTTGAATTTTGAAAG
196 GTTGAACTCTCTAAATGGTAGCTCTTTTAGATCAACTGGGAAAGTCTGGCCTTGAATTTTGAAAG
* *
18202 GGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAAAGGACTAGACACTCGAACTTAT
261 GGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCAAACTTAT
* * * ** *
18267 ATCTCTAAACCCTTGGTTGGAAGGTTTCTTTCTCGAACTACGTTATAACATATATAGGAGAGTGT
326 ATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGAGTGT
* *
18332 GGACTCTAGATCTACTAATGTTGGAACTAGAATAGAAAACACGATAATGTACATGAGATCACATC
391 GGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGATCACATC
* * * *
18397 AGCTACGTCCCACTCCTCCTAGGCTCAAGTGACATACTAGCCTAAGGCTACTCTAGGCTCTAAAC
456 AGCTACATCCCACTCCTCCTAGGCTCAAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAAC
* * * * * * * *
18462 CAGTCACAGTTCAAGCAATGTCCTTATTGTGCTATATGAAAATAAAACTCCTACCTCTAGAAACG
521 CAGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAGAAACG
* * * * **
18527 TAAAAGAAGACATTTGAAGAGAATGAATATTATGCATTATTAAATTATTGATATAAAAACGTTTA
586 TAAAAGAAGACATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATAAAAACGTTTA
*
18592 TGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAG
651 TGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAG
* * *
18657 -ATCTTTTTAAATAATTGTCTAACAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTT
716 AATC-TTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTT
*
18721 TAGAGTTTCTGAATAAATATATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATATAAAGAC
780 TAGAGTTTCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATATAAAGAC
* * * * *
18786 TGACATTTTATATATATTTTTAAAAACTATAAGACA-TCTTGACATGGTGTAGTCTGTTTAGAGT
845 TGACATTATATATATAATTTTAAAAAATATAGGA-AGTCTTGACATGGTGTAGTCTGATTAGAGT
* *
18850 GTTTGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATATAGTTTGG
909 GTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG
18915 ATTATTG
974 ATTATTG
* * * *
18922 ATGGGAGTAATGAA-CATATTCGTA-GAGACTTTTGTCATGAGTTGGTAGGTAATTTTGATGTAG
1 ATTGGAGTAATGAACCA-ATTCGCATG-GACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAG
* * * * * *
18985 AAAATTCTCGAGTTAGATTCAATCAATATAAATTTAATCTGGGGGTCATTAACTGGGGCAGAGCT
64 AAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCT
*
19050 TGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATTCCTAAGATC
129 TGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATC
* *** *
19115 ATGTTGAACTCT-TAAAAATGGTAGCT-TTAATT-TATTGGCTGGGAAAGTCTGGCCTCGAATTT
194 ATGTTGAACTCTCT--AAATGGTAGCTCTT--TTAGATCAACTGGGAAAGTCTGGCCTTGAATTT
***** * * * ** *
19177 TGAGTTTACATCGACGAAGGACCTTGTCGACACGAACATATGTCCCTTGAGGACTAGACACTCAA
255 TGAAAGGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCAA
* * *
19242 ACTTATATCTCTAAATACTCGGTAGGAAGGTTTCTTACTCGAACAAAATCATAACATATATAGGA
320 ACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGA
* *
19307 GTA-TGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACAGTAATGTACATGATA
385 G-AGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGA
* * * * * *
19371 TCACATCAGCTATATTCCAATCCCCCTAGGCTCAAATGACATACT-GACATGAGGCTACTCTAGA
449 TCACATCAGCTACATCCCACTCCTCCTAGGCTCAAATGACATACTAG-CGTGAGGCTACTCTAGG
* *
19435 CTCTAAACCGGGCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTC
513 CTCTAAACCAGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTC
* **
19500 TAGAAACGTAAAAGAAGATATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATTGA
578 TAGAAACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATAAA
* * * * * **
19565 AACATTTATGGTTAATTGTTGGTGAGAGAAAAAGTATCAACATAATTGATTTTGATGAGTGAAGA
643 AACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGA
* * *
19630 TGAGAAATAATCTTTTAAAAAATTGTCGAAGAACATAAAGGGTGGAGAAGTGTACAAGAGAATAA
708 TGAGAAAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAA
*
19695 GGTATTTTAGAGTTTCTGAATAAATATATAGTTGAACTTGTAAAC-TTTTTATAGAAGATCTATA
773 GGTATTTTAGAGTTTCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATA
*
19759 TAAAGACTGACATTATATATATAATTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTT
838 TAAAGACTGACATTATATATATAATTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGAT
*
19824 TAGAGTGTATGAATTTATGGAAGAGTTGAAGGGAAAGAAAAA-AAAATGGTGTAAGAGAAATAGA
903 TAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGA
19888 GTTTGGATTA-TG
968 GTTTGGATTATTG
*
19900 TATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGA
1 -ATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGA
* * **
19965 AAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCCGGGGATTGTTGGGAGGGGTAGAGCTT
65 AAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCTT
* * * *
20030 GAGTTGTCTAGCTTCGCACCTTCAACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCA
130 GAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCA
* *
20095 TGTTGATCTCTCTAAATGGTAGCTCTTTTAGATCAACTGGGAAAGTCTGGCCTTAAATTTTGAAA
195 TGTTGAACTCTCTAAATGGTAGCTCTTTTAGATCAACTGGGAAAGTCTGGCCTTGAATTTTGAAA
*
20160 GGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCGAACTTA
260 GGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
* * *
20225 TATCTC-AAATTCCTTGGCT-GGAAGGTTTCTTTCTTGAACTAAGTCATAACATATATAGGAGAG
325 TATCTCTAAA-TCCTCGG-TAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGAG
*
20288 TGTGGACTCTAGATCTACTAATGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGATCAC
388 TGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGATCAC
* * * * *
20353 ATCAGCTACGTCCCACTCCTCCAAGTCTCAAATAACATACTAGCGTGAGGCTACTCTAAGCTCTA
453 ATCAGCTACATCCCACTCCTCCTAGGCTCAAATGACATACTAGCGTGAGGCTACTCTAGGCTCTA
* * * * * * * *
20418 AACCAGTCACAGTTCTAGCAATGCCCTTATTTTTCTATATGAAAACAAAACTCCTACCTCTAGAA
518 AACCAGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAGAA
* * * * *
20483 ACGTAAAAGAAGACATTTGAAGAGAATGAGTATTATGCATCATTAAATTATTGATATAAAAATGT
583 ACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATAAAAACGT
20548 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
648 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
*
20613 AAGAA-CTTTATAAATAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTA
713 AAGAATCTTT-TAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTA
*
20677 TTTTAGAGTTTCTGAACAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATATAAA
777 TTTTAGAGTTTCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATATAAA
* *
20742 GACTGACATTATATATATATTTTTAAAAAATATAGGAATTCTTGACATGGTGTAGTCTGATTAGA
842 GACTGACATTATATATATAATTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGATTAGA
* * *
20807 GTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAATAAAATGGTGTTAGAGAAATATAGTTT
907 GTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTT
20872 GGATTATTG
972 GGATTATTG
* * * * *
20881 ATTGGAGAAATGAA-CATATTCGCA-GATACTTGAGTCATTAGTTGGTATG-TAATTTTGATGCA
1 ATTGGAGTAATGAACCA-ATTCGCATG-GACTTGTGTCATGAGTTGGTA-GATAATTTTGATGTA
* * * * * *
20943 GAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGGGGTCATTAACTGGGGCAGAGC
63 GAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGC
* *
21008 TTGAGATGTCTAGCTTTACACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGAT
128 TTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGAT
* * * * *
21073 CATGTTGAAATCTCTAAATGGTAGCTCTATTAGATCTAA-TGGAAAAGTATTGCCTTGAATTTTG
193 CATGTTGAACTCTCTAAATGGTAGCTCTTTTAGATC-AACTGGGAAAGTCTGGCCTTGAATTTTG
* * * * *
21137 ATAGGGTATCGACTGAGGACCTTGTCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAAC
257 AAAGGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCAAAC
* * * * *
21202 TTATTTCTCTAAATCCTTGATAGGAAGGTTTATTTCTCGAACTAAATCATAACATATATAGGAGT
322 TTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGA
* * * * * * * *
21267 GTTTGGACTCTAGATATACTAATGTTTGAACTAGAATAGAAAACACAGTAATGTACCTGATATAA
387 GTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGATCA
*
21332 CATCAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACT-GACGTGAGGCTACTCTAGGCTC
452 CATCAGCTACATCCCACTCCTCCTAGGCTCAAATGACATACTAG-CGTGAGGCTACTCTAGGCTC
*
21396 TAAACCGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAG
516 TAAACCAGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAG
* * *
21461 AAACGTAAAAGAAGACATTAGTAGAGAATGAGTACTATGTACCATTAAATTATTGATATAGAAAC
581 AAACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATAAAAAC
* * * * * * *
21526 GTTTATGGTTAATTGTAGGTGGGAGAAAAAGTGTTGAAAAAATAGATGTTGATGAGTAAAGATGA
646 GTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGA
* * *
21591 GAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAAACAATAAGGT
711 GAAAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGT
* * *
21656 ATTTTAAGAGTTTCTTAAATAAATAAATAGTTGAACTTATAAA-TATTTTTATAGAAGTTCTATA
776 ATTTT-AGAGTTTC-TGAATAAATAAATAGTTGAACTTGTAAACT-TTTTTATAGAAGATCTATA
* * * * *
21720 AAAAGATTGTCATTATATATAT-ATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGAT
838 TAAAGACTGACATTATATATATAATTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGAT
* * *
21784 TAGAGTGTATGAATTG-TTGAAAACGTTAAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAG
903 TAGAGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAG
*
21848 AGTTTGGATTGTTG
967 AGTTTGGATTATTG
* *
21862 ATTGGAGTAATGAAACAATTCGTATGGACTTGTGTCATGAGTTGGTA
1 ATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTA
21909 ACAGTAAATT
Statistics
Matches: 4361, Mismatches: 501, Indels: 142
0.87 0.10 0.03
Matches are distributed among these distances:
967 26 0.01
968 300 0.07
969 201 0.05
970 25 0.01
971 148 0.03
972 80 0.02
973 139 0.03
974 151 0.03
975 109 0.02
976 228 0.05
977 278 0.06
978 524 0.12
979 349 0.08
980 1046 0.24
981 686 0.16
982 71 0.02
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (980 bp):
ATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCTTG
AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCAT
GTTGAACTCTCTAAATGGTAGCTCTTTTAGATCAACTGGGAAAGTCTGGCCTTGAATTTTGAAAG
GGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCAAACTTAT
ATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGAGTGT
GGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGATCACATC
AGCTACATCCCACTCCTCCTAGGCTCAAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAAC
CAGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAGAAACG
TAAAAGAAGACATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATAAAAACGTTTA
TGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAG
AATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT
AGAGTTTCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATATAAAGACT
GACATTATATATATAATTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGATTAGAGTGT
ATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGAT
TATTG
Found at i:21300 original size:980 final size:974
Alignment explanation
Indices: 15997--39663 Score: 15923
Period size: 977 Copynumber: 24.3 Consensus size: 974
15987 ATAGCCTGAC
15997 ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
*
16062 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* * *
16127 AGTTGTCTAGCTTTGCACCTTAAATAAGCATCATGTTCCGAAATCCAATCCATGCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * *
16192 GTTGATCTCTCTAAATGGTACCTCTTTTAGATC-AACTGGGAAAGTCTGGCCTTGAGTTTTGAAA
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAA-TGGGAAAGTCTGGCCTTGAATTTTGATA
* *
16256 GGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACAATCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
* * *
16321 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCAAACAAAATCATAGCATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
* * * * *
16386 TGGACTCTGGATCTACTAGCGTTGGAACTAGAATAGAAAAAACGGTAATGTACCGGATATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * *
16451 CAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTAACATAAGGCTACTCTAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GCGTGAGGCTACTCTAGGCTCTAAA
* * * *
16516 CAGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCAAGAAAC
518 C-CGCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAAAC
* * * *
16581 GTAAACA-AAGACATTCGTAGAGAATGAGTATTATCTAGCATTAAATTATTGATATAAAAACGTT
581 GTAAA-AGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTT
* * * *
16645 TAAGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAATTGGAAGTTGATGAGTGAAGATGAGAA
645 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAA
* *
16710 AGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATT
710 AGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATT
* * *
16775 TTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTATAAA-TATTTT-TAGAAGTTCTATAAAAA
775 TT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAA
* * * *
16838 GATTGAC-GT-TATATATATTTTAAAAAATATAGGAAGACTTGACATAGTGTAGCCTAATTAGAG
839 GACTGACATTATATATATATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGA-TAGAG
* * *
16901 TGTATGAATT-ATTGGAA-ACATTGAAGGGAAAGAAAAAGAAATTGGTGTATGAGAAATAGAGTT
902 TGTATGAATTGA-TGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
*
16964 TGGATTGTTG
965 TGGATTATTG
* * *
16974 ATTGGAGTAATGAAATAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTAATGTAGAA
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * * * *
17039 AATTATCGAGTTAGGTTCAATCAATATTAATTTAATATGGGGGTCGTTGACAGTGGTAGAGTTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
17104 AGTTGTCTAGCTTTGCACCTTAAA-AATTCATCATGTTCTGAAAGCCAATCTATGCCTAAGATCA
130 AGTTGTCTAGCTTTGCACCTTAAACAA-GCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCA
* * * * *
17168 TGTTGAACTCTCTAAATAGTATCTCTATTAGATCGACTGGGAAAATCTGGCCTTGATTTTTGACT
194 TGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-T
* *
17233 -GGGCATCGATGGAGGACCTTGTCGACAAGAACATCT-A---TAGAGGACTAGACACTCGAACTT
258 AGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTT
** * * *
17293 ATATCTCTAAATCCTCGACAGGAATGTTTCTTTCTCAAACTAAGTCATAACATATATAGGA--GT
323 ATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGT
*
17356 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACTTGAGATCACA
388 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACA
* * * * *
17421 TTAGCTACATCCCACTCCTCTTAGGCTTGAATGAAATACTGGCG-GTAGGCTACTCTAGGCTCTA
453 TCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GCGTG-AGGCTACTCTAGGCTCTA
** * * * * *
17485 AACCGACCTTAGATATAGAAATTCCCCTACTGTACTATTTG-AAAAAAACTCCCATCTCTAGAAA
516 AACCG-CCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAA
* * * * *
17549 CATAAAAGAAGTCAATC-ACAAAGAATAAGTATTATGTAGCATTAAATTATTTATATAGAAACGT
580 CGTAAAAGAAGTCATTCGA-AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* * *
17613 TTATGGTTAATTTTAGGTGAGAGAAAAAGTATCGACATAATGGATTTTGATGAGTGAAGATGAGA
644 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGA
* * * *
17678 AATAATCTTTTAAACAATTGTCGAAGAACATAAAGAATAGAGAAGTGTACAAGAGAATAAGGTAT
709 AAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTAT
* * *
17743 TTTAGAGTTT-CTGAATAAATATATAGTTGAACTTGTAAACTTTTTTTATAGAAGATCTATATAA
774 TTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAAC-TTTTTTATAGAAGTTCTATAAAA
* * * *
17807 AGACTGACATTATATATATATATTTTTTAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTT
838 AGACTGACA-T-TATATATATA-TTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTG-AT
*
17872 AGAGTGTATGAATTGATGGAAGAGTTGAA-GG---G--AAA-AAAATGGTATAAGAGAAATAGAG
898 AGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAG
17930 TTTGGATTATTG
963 TTTGGATTATTG
* * *
17942 ATTGGAGTAATGAGCCAATTCTCATGGACATGTGTCATGAGTTGGTAGATACTTTTGATGTAGAA
1 ATTGGAGTAATGA-ACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * *
18007 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTAGGGATCGTTGGCAAGGGTAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* * *
18072 AGTTGTCTAGCTTTGCACCTTCAACAATCATCATGTTTTGAAAGCCAATCCATGCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * *
18137 ATTGATCTCTCTAAATGGTAGCTCTTTTAGATC-AACTGGGAAAGTCTGGCCTTGAATTTTGAAA
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAA-TGGGAAAGTCTGGCCTTGAATTTTGATA
* * *
18201 GGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAAAGGACTAGACACTCGAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
* * * ** * *
18266 TATCTCTAAACCCTTGGTTGGAAGGTTTCTTTCTCGAACTACGTTATAACATATATAGGAGAGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
* * *
18331 TGGACTCTAGATCTACTAATGTTGGAACTAGAATAGAAAACACGATAATGTACATGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* *
18396 CAGCTACGTCCCACTCCTCCTAGGCTC-AAGTGACATACTAGCCTAAGGCTACTCTAGGCTCTAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAA-TGACATACT-GCGTGAGGCTACTCTAGGCTCTAA
* * * * * *
18460 ACCAGTCACAGTTCA-AGCAATGTCCTTATTGTGCTATATGAAAATAAAACTCCTACCTCTAGAA
517 ACC-GCCACAGAT-ATAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAA
* * * * ** *
18524 ACGTAAAAGAAGACATTTGAAGAGAATGAATATTATGCATTATTAAATTATTGATATAAAAACGT
579 ACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* *
18589 TTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
644 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGA
* * * *
18654 AAG-ATCTTTTTAAATAATTGTCTAACAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTA
709 AAGAATC-TTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA
* * *
18718 TTTTAGAGTTT-CTGAATAAATATATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATATAA
773 TTTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAA
* * * * * *
18782 AGACTGACATTTTATATATATTTTTAAAAACTATAAGACATCTTGACATGGTGTAGTCTGTTTAG
838 AGACTGACATTATATATATA-TTTTAAAAAATATAGGA-AACTTGACATGGTGTAGCCTG-ATAG
* *
18847 AGTGTTTGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATATAGTT
900 AGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
18912 TGGATTATTG
965 TGGATTATTG
* * * * *
18922 ATGGGAGTAATGAACATATTCGTA-GAGACTTTTGTCATGAGTTGGTAGGTAATTTTGATGTAGA
1 ATTGGAGTAATGAACA-ATTCGCATG-GACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGA
* * * * *
18986 AAATTCTCGAGTTAGATTCAATCAATATAAATTTAATCTGGGGGTCATTAACTGGGGCAGAGCTT
64 AAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTT
* *
19051 GAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATTCCTAAGATCA
129 GAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCA
* * * ** *
19116 TGTTGAACTCT-TAAAAATGGTAGCTTTAATT-TATTGGCTGGGAAAGTCTGGCCTCGAATTTTG
194 TGTTGAACTCTCT--AAATGGTAGCTCT-ATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTG
*** * * * ** *
19179 AGT-TTACATCGACGAAGGACCTTGTCGACACGAACATATGTCCCTTGAGGACTAGACACTCAAA
256 A-TAGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAA
* * *
19243 CTTATATCTCTAAATACTCGGTAGGAAGGTTTCTTACTCGAACAAAATCATAACATATATAGGAG
320 CTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAG
* * * *
19308 TATGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACAGTAATGTACATGATATC
385 TGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATC
** * * * * * *
19373 ACATCAGCTATATTCCAATCCCCCTAGGCTCAAATGACATACTGACATGAGGCTACTCTAGACTC
450 ACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTG-CGTGAGGCTACTCTAGGCTC
* * *
19438 TAAACCGGGCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAG
514 TAAACC-GCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAG
* * *
19503 AAACGTAAAAGAAGAT-ATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATTGAAA
577 AAACGTAAAAGAAG-TCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAA
* * * * * *
19567 CATTTATGGTTAATTGTTGGTGAGAGAAAAAGTATCAACATAATTGATTTTGATGAGTGAAGATG
641 CGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATG
* * * *
19632 AGAAATAATCTTTTAAAAAATTGTCGAAGAACATAAAGGGTGGAGAAGTGTACAAGAGAATAAGG
706 AGAAAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGG
* * *
19697 TATTTTAGAGTTT-CTGAATAAATATATAGTTGAACTTGTAAAC-TTTTTATAGAAGATCTATAT
771 TATTTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAA
* * *
19760 AAAGACTGACATTATATATATAATTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTT
836 AAAGACTGACATTATATATAT-ATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTG-AT
*
19825 AGAGTGTATGAATTTATGGAAGAGTTGAAGGGAAAGAAAAA-AAAATGGTGTAAGAGAAATAGAG
898 AGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAG
19889 TTTGGATTA-TG
963 TTTGGATTATTG
19900 TATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGA
1 -ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGA
* * ** *
19965 AAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCCGGGGATTGTTGGGAGGGGTAGAGCTT
64 AAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTT
* * *
20030 GAGTTGTCTAGCTTCGCACCTTCAACAATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATC
129 GAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT-GAAAGCCAATCCATGCCTAAGATC
* * *
20094 ATGTTGATCTCTCTAAATGGTAGCTCTTTTAGATC-AACTGGGAAAGTCTGGCCTTAAATTTTGA
193 ATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAA-TGGGAAAGTCTGGCCTTGAATTTTGA
* * *
20158 AAGGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCGAACT
257 TAGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACT
* * *
20223 TATATCTC-AAATTCCTTGGCT-GGAAGGTTTCTTTCTTGAACTAAGTCATAACATATATAGGAG
322 TATATCTCTAAA-TCCTCGG-TAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAG
* * *
20286 AGTGTGGACTCTAGATCTACTAATGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGATC
385 TGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATC
* * * * *
20351 ACATCAGCTACGTCCCACTCCTCCAAGTCTCAAATAACATACTAGCGTGAGGCTACTCTAAGCTC
450 ACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GCGTGAGGCTACTCTAGGCTC
* * * * * * * *
20416 TAAACCAGTCACAGTTCTAGCAATGCCCTTATTTTTCTATATGAAAACAAAACTCCTACCTCTAG
514 TAAACC-GCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAG
* * * * * *
20481 AAACGTAAAAGAAGACATTTGAAGAGAATGAGTATTATGCATCATTAAATTATTGATATAAAAAT
577 AAACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAAC
*
20546 GTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGA
642 GTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGA
* *
20611 GAAAGAA-CTTTATAAATAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGG
707 GAAAGAATCTTT-TAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGG
* * *
20675 TATTTTAGAGTTT-CTGAACAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATAT
771 TATTTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAA
* *
20739 AAAGACTGACATTATATATATATTTTTAAAAAATATAGGAATTCTTGACATGGTGTAGTCTGATT
836 AAAGACTGACATTATATATATA-TTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGA-T
* * *
20804 AGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAATAAAATGGTGTTAGAGAAATATAG
898 AGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAG
20869 TTTGGATTATTG
963 TTTGGATTATTG
* * * * * *
20881 ATTGGAGAAATGAACATATTCGCA-GATACTTGAGTCATTAGTTGGTATG-TAATTTTGATGCAG
1 ATTGGAGTAATGAACA-ATTCGCATG-GACATGTGTCATGAGTTGGTA-GATAATTTTGATGTAG
* * * * *
20944 AAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGGGGTCATTAACTGGGGCAGAGCT
63 AAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCT
* * *
21009 TGAGATGTCTAGCTTTACACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATC
128 TGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATC
* * * * *
21074 ATGTTGAAATCTCTAAATGGTAGCTCTATTAGATCTAATGGAAAAGTATTGCCTTGAATTTTGAT
193 ATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGAT
* * *
21139 AGGGTATCGACTGAGGACCTTGTCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTT
258 AGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTT
* * * *
21204 ATTTCTCTAAATCCTTGATAGGAAGGTTTATTTCTCGAACTAAATCATAACATATATAGGAGTGT
323 ATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGT
* * * * * * *
21269 TTGGACTCTAGATATACTAATGTTTGAACTAGAATAGAAAACACAGTAATGTACCTGATATAACA
388 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACA
*
21334 TCAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTGACGTGAGGCTACTCTAGGCTCTAA
453 TCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTG-CGTGAGGCTACTCTAGGCTCTAA
* *
21399 ACCGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAGAAA
517 ACC-GCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAAA
* * * * *
21464 CGTAAAAGAAGACATTAGTAGAGAATGAGTACTATGTACCATTAAATTATTGATATAGAAACGTT
580 CGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTT
* * * * * *
21529 TATGGTTAATTGTAGGTGGGAGAAAAAGTGTTGAAAAAATAG-ATGTTGATGAGTAAAGATGAGA
645 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAT-TTGATGAGTGAAGATGAGA
*
21593 AAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAA-AACAATAAGGTA
709 AAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAA-AATAAGGTA
* * *
21657 TTTTAAGAGTTTCTTAAATAAATAAATAGTTGAACTTATAAA-TATTTTTATAGAAGTTCTATAA
773 TTTT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACT-TTTTTATAGAAGTTCTATAA
* *
21721 AAAGATTGTCATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTA
836 AAAGACTGACATTATATATATATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGA-TA
* * *
21786 GAGTGTATGAATTG-TTGAAAACGTTAAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAG
899 GAGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAG
*
21850 TTTGGATTGTTG
963 TTTGGATTATTG
* * * ** *
21862 ATTGGAGTAATGAAACAATTCGTATGGACTTGTGTCATGAGTTGGTAACAGTAAATTATTTTTCT
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGT-AGA-T-AATT-TTGATGT
* * ** *** ** * * * * * * * *
21927 AG-AAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATAT-AGAAACACTTGACAT
61 AGAAAATTCTCGAGTTAGGTTCA-ATCA-ATATA-AATTT---A-ATCTGGGGATC-GTTGACA-
* * * * * * ** **** **
21990 GGTG--TATCCTGA-TAAAGTGTATGAATTG-A---TAGAA-AAG--T--TGAAGGGAAAGAAAA
117 GGGGCAGAGCTTGAGT--TGTCTA-GCTTTGCACCTTA-AACAAGCATCATGTTCTGAAAGCCAA
*** ** ** * * * * * * * *
22043 GAAAATGGTGTAAGAGAAATAGAGTTTGGATTAT-TGATTGGAGTAATGAAC-CAATTCGCATGG
178 -TCCAT-GCCTAAGA-TCAT---G-TTGAACTCTCTAAAT-G-GT-A-G--CTCTATTAG-ATCG
* * * ** * ** *
22106 ACATGTGTCATGAGT-TGG--TAGATAATTTTGATGTAGGAAATTCTAGA-GTTAGGTTCAT-TC
229 A-ATG-G-GA-AAGTCTGGCCTTG--AATTTTGA--TAGGGCA-TC--GACG-GAGGACCTTGTC
* * * * * ** * * ** *
22166 -A-ATATAA-ATTTAA-TCT-GGGGATCGTTGACAGGGGCAGAGCTTGAGT-TGTCTAGCTTTGC
282 GACA-AGAACATCTAACCCTAGAGGA-C-TAGACA--CTCA-AACTT-A-TATCTCTA--AATCC
* ** ** ** * * * * * * * * * **
22225 ACCTTAATCAA-GCATCATGTTCT-GAAAGCCAATCCATTCCTAAGATAATGTTGAACTCTATAA
337 TCGGT-AGGAAGGTTTC-T-TTCTCG-AA-CTAA---A-TCATAACAT-ATATAGGAGTGTGTGG
*** * * * * * *** * * *
22288 AGGGTAGATCTAATAGATAGTCTAGGAA--AGACTGGCCTCAAATTTGAGTTGGCATTTA-CGGA
392 ACTCTAGATCTACTA-A-CGT-T-GGAACTAGAATAG---AAAACACG-G-T--AATGTACCTGA
* * ** ** * *
22350 GGACCTTGTCGACA--AG-AACATCTAAC-CCT-AGAGGACTAGACACTCAAACTTATATCT-C-
446 -GA-----TC-ACATCAGCTACGTCCCACTCCTCCTAGG-CTCGA-A-T--GAC--ATA-CTGCG
** * * * * *** * * * * *
22408 T-A-AATCCTCGGTAGAAAGGTTTCTTAATCATAACATATATAGGAGTG----T-GTG-GACTCT
496 TGAGGCTACTC--T----AGG-CTCTAAACCGCCACAGATATAGCAATGCCCCTACTGTG-CTAT
** ** *** * * * * * *
22465 A-GATCTACTAACGTTGGA--ACTAGAATA-G-AAAACACGGTAATGTACCTG-AGATCACATCA
553 ATGA-AAAAAAAC-TCCCACCTCTAGAA-ACGTAAAAGA-AGTCAT-T--C-GAAGA-GA-ATGA
* ** **** *** * *
22524 G--CTATGTCCCACTCCTCTTAGGCTTGA-AT-GACATACTGGCGGGA-GGCTACTT-TAGGCT-
608 GTATTATGTAGCA-TTAAATTA---TTGATATAGA-A-AC--G-TTTATGGTTAATTGTAGG-TG
** ** * * * * * *** * * ** * *
22582 --CTAAATCG-A-CCATAGATATAGCACTTCCCCTACAGTGCTATTTGA-AAAAAACTCCCACCT
663 AGAGAAAAAGTATCGACA-AAAT-GGAATT-TGAT-GAGTG-AAGATGAGAAAGAA-T----CTT
* * * ** ** * * ** * **
22642 CTAGA-AA-CGTAAAAGAAGTCAATCTCAGAGATTGAGAATTATGTAGCATTAAATTATTG-A-T
718 TTAAACAATTGTCGAAGAA--C-AT-AAAGAG-TGGAGAA--GTGTA-CAAGAAAATAAGGTATT
* * ** * * * * ** * ** * ** ** *
22703 ATAGAAACGTTT-ATGGTTAACT--GTAGGTGAGA---GAAAAAGTATCGA-AAAAAATGGATTT
775 TTAG--A-GTTTCCTGAATAAATAAATAGTTGA-ACTTGTAAACTTTTTTATAGAAGTTCTA-TA
** * * * * * * * * * * * * * **
22761 TGATGAGTGAAGATAAGAAATAATCTTTTAAACAATAGTCGAAGAACAT-A-AAGAGTGGAGAAG
835 AAAAGACTG-ACATTATATAT-ATATTTTAAAAAATA-TAGGA-AACTTGACATG-GTGTAG-CC
* *** * *** **** * * **
22824 TG-TACAAGAAAAT-AA-GGCATTTTTAGAGTT-TCCTG-AATAAAAA-AATA-GGTG-AACTTG
894 TGATA-GAGTGTATGAATTG-A-TGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAA-GAG
** * * *
22881 TAAATTTTATTTCTAGAAGTTATATA
955 -AAA-TAGAGTT-T-GGA-TTAT-TG
*** * * * *** ** * * ** * *
22907 AAAAGACTGACATTATATATATTTTAAAAGATATAG-GAACACTTGACATGGT-G-TAGCCTTAT
1 ATTGGAGT-A-ATGA-ACA-ATTCGCATGGACAT-GTG-TCA--TGAGTTGGTAGATA--ATTTT
* * * ** * * * * * * *
22969 AAAGT-GCATGAA-T-T-GATGGAAGTGTTGAATGGAA-AGAAA---AA---GAGAATGGTGTAA
56 GATGTAG-A-AAATTCTCGA-GTTAG-GTTCAAT-CAATATAAATTTAATCTGGGGATCGT-TGA
* **** * * * * *
23023 GAGAAATAGAGTTTGGATTATTGAT-TGGAG-TAATG-AAC-TAATTAGCATGGACAT-ATG-TC
115 CAGGGGCAGAGCTT-GA--GTTG-TCT--AGCT-TTGCACCTTAA--A-CA-AG-CATCATGTTC
* ** ** *** * * * *
23082 ATGAGTTGGTAGGTAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAA-TCAATATAAAT-TTA
168 -TGA-----AAGCCAA--TCCATGCCTAAGA-TC---A--T--GTTGAACTC--TCTAAATGGTA
* *** * ** ** * * * ** ** *
23145 -ATCT-GGGGATCG-TTGATAGGGGCCGAG-CTTGAATTGTCTAGCT-TTGCACCTTAAAC-AAG
215 GCTCTATTAGATCGAATGGGAAAGTCTG-GCCTTGAATT-T-T-GATAGGGCA---TCGACGGAG
* * * * * ** ** * * * * *
23204 CATCATGTTCTGA-AAG-CCAATCCATTCCTAAGATCATGTTGAACTCTCTTAA-TGGTAGATCT
273 GACCTTG-TC-GACAAGAAC-ATCTAACCCT-AGAGGA-CTAG-ACACTC-AAACT--TATATCT
* * *** * * ** * ** * ** * *
23266 AATAGATAGAC--TGGGAAAG--TCTGGCCTC-AAAT-TTTGAGTTGGCAT-TGACGGAGGACCT
329 -CTAAATCCTCGGTAGGAAGGTTTCT-TTCTCGAACTAAATCA--TAACATAT-A--TAGGA-GT
* * * * * * *** * * * * *
23324 -TGTCGG---CAAGAAC-ATCTAACCCTAGAGGACTAG-ACACTCAA-AC--TTATAT-CTTTAA
386 GTGT-GGACTCTAGATCTA-CTAA-CGTTG-GAACTAGAATAGAAAACACGGTAATGTACCTGAG
** * ** * * * ** * * * *
23379 ATC-C-TCGGTAGAAAGGTTTC-TTTCTCGAATTA-AATC--ATAACATATATAGGAGTGTGTG-
447 ATCACATC---AGCTACGTCCCACTCCTC---CTAGGCTCGAATGACATA-CT--GCGTGAG-GC
* * * ** * ** ** * * * *
23437 GACTCTA-GATCTACTAACGTTGGAAATAGA-ATAG-AAAACACGGTAATGTACCTGAGATCACA
502 TACTCTAGGCTCTA--AAC---CGCCACAGATATAGCAATGC-CCCTACTGT-GCT-ATATGA-A
*** ** * * * * * * * ** * *
23499 TCAGCTATGTCCCACTCCTCTCAG--GCTTGAATG-A--CATGCTG--GCG--GGAGGCTTCTTT
558 --AAAAAACTCCCA--CCTCT-AGAAACGTAAAAGAAGTCATTC-GAAGAGAATGAGTATTATGT
* * * * ***
23555 AGGC-TCTAAATCGACCATAGATATAGCAATTCCCCTACAGTGCTAT-TTTAAAAAAACTCCCAC
617 A-GCAT-TAAAT----TATTGATATAG-AA-------AC-GT-TTATGGTT-----AA-TTGTA-
** * * * * * * * *
23618 CTCTAGAAACGTAAAAGAAGTCAATTGCAGCGAAA-GAGTATTATG-TAGCATTAAATTATTGAT
659 -GGT-GAGA-G--AAA-AAGT--ATCG-A-CAAAATG-GAATT-TGAT-G-AGTGAA-GA-TGAG
* * * ** * * * * ** *
23681 ATAGAAACGTTTATGGTTAATTATAGGT-GAGAGAAAAAGTATCGACAAAATGGATTTTGATGAG
708 AAAGAATC--TT-T--TAAACAAT-TGTCGA-AG-AACA-TA---A-AGAGTGGA--GA-A-GTG
* * * * *
23745 TGA-AGATGAGAAATAA--TCTTTTAAACAATTGT-C-GAAGAACATAAAGAGTGGAGAAGTGAA
756 T-ACA-A-GA-AAATAAGGTATTTT--AGAGTT-TCCTGAATAA-AT-AA-A-T--AG--TTGAA
** * * * * *
23805 CAAGAAAATAAGACATTTTAATAG--TTTCCTGAATAAAAAATATGTGA-ACTTATAAAATTTTT
806 CTTG----TAA-ACTTTTTTATAGAAGTT-CT--AT-AAAAAGA-CTGACA-TTAT---A-----
* * *
23867 TTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACACTTGACAT
852 -TATA-TA-TT-TT----------------------A----AAAA-ATATAGGAA-ACTTGACAT
* *
23932 GGTGTAGCCTAATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGT
885 GGTGTAGCCTGATAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGT
23997 AAGAGAAATAGAGTTTGGATTATTG
950 AAGAGAAATAGAGTTTGGATTATTG
24022 ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
24087 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
*
24152 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * * * **
24217 GTTGAACTCTCTAAATTGTAGATCTAATAGATAGTATGGGAAAGACTGGCCTCAAATTTTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * * *
24281 TGGCATTGACGAAGGACCTTGTCGACAAGAACATCTAACTCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
24346 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
* * * * *
24411 TGGACTTTAGATCTACTAGCGTTGGAACTAGAATAGAAAACATGGTAATGTACCTAATATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * *
24476 CAGCTACGTCCCCCTCCTCCTAAGCTCGAATGACATACTGAGATGAGACTACTCTAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTGCG-TGAGGCTACTCTAGGCTCTAAA
* *
24541 CCGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAAC
518 CC-GCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAAAC
* * * *
24606 GTAAATGAAGTCATTCGTAGAAAATGAGTATTATGTAGCATTAAATTATTGATATAGAAATGTTT
581 GTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTT
* *
24671 ATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAA
646 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAAA
* *
24736 GAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATTT
711 GAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTT
* * *
24801 TAAGAGTTTCCTAAATAAATAAATAGTTGAACATATAAA-TATTTTTATAGAAGTTCTATAAAAA
776 T-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACT-TTTTTATAGAAGTTCTATAAAAA
* *
24865 GATTGACATTATATATATATATTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAG
839 GACTGACATTATATATATATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGA-TAGAG
* *
24930 TGTATGAATTGTTGGAA-ACGTTGAAGGGAAAGAAAAA-AAAATGGTGTATGAGAAATAGAGTTT
902 TGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTT
* *
24993 GAATTGTTG
966 GGATTATTG
* * * *
25002 ATTGGAGTAATGAAACAATTCGCATGGACTTGTGTCATCATTTGGTAGATAATTTTAATGTAGAA
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * * *
25067 AATTCTCTAGTTAGGTTCAATCAATATTAATTTAATATGGGGGTCATTGACAGGGGTAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
25132 AGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCTGAAAGCAAATCCATGCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
** * *
25197 GTTGAACTCTCTAAACAGTATCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * * *
25261 GGGCATCGACAGAGGACCTTGTCGACAAGAACATCT-A---TTGAGCACTAGACACTCGAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
*** * *
25322 TATCTCTAAATCCTCTACAGGAAGGTTTCTTTCTCAAACTAAGTCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
25387 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * *
25452 CAGCTACGTCCCACTCCTCTTAGGCTTGAATGACATACTGGAGGGAGGCTACTCTAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GCGTGAGGCTACTCTAGGCTCTAAA
* ** * * * * *
25517 CCGACCATAGATATATAAATTCCCCTACTGTACTATTTG-AAAAAAACTCCCATCTCTAGAAACA
518 CCG-CCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACG
* * *
25581 TAAAAGAAGTCAATC-ACAAAGAATGAGTATTATGTAACATTAAATTATTGATATAGAAACGTTT
582 TAAAAGAAGTCATTCGA-AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTT
* *
25645 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACATAATGGATTTTGATGAGTGAAGATGAGAAA
646 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAAA
* *
25710 TAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTT
711 GAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTT
* * * *
25775 TAGAGTTT-CTGAATAAATATATAGTTGAACTTTTAAACTTTTTTTATAGAAGATCTATATAAAG
776 TAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAAC-TTTTTTATAGAAGTTCTATAAAAAG
* * *
25839 ACTGACATTACATATATATATTTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTTAG
840 ACTGACATT--ATATATATA-TTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTG-ATAG
* *
25904 AGTGTATGAATTGATGGAAGAGTTAAAGGGAAAG-AAAA-AAAATGGTGTAAGAGTAATAGAGTT
900 AGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
25967 TGGATTATTG
965 TGGATTATTG
25977 ATTGGAGTAATGAACGAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAAC-AATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * *
26042 AATTCTTGAGTTAGGTTCAATCAATATAACTTTAATCTGGGGATCGTTGGCAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
26107 AGTTGTCTAGCTTTGCACCTTCAACAATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCA
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT-GAAAGCCAATCCATGCCTAAGATCA
* * * *
26171 TGTTGATCTCTCTAAATGGTAGCTCTTTTAGATC-AACTGGGAAAGTCTGGCCTTGAATTTTTAA
194 TGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAA-TGGGAAAGTCTGGCCTTGAATTTTGAT
* * *
26235 AGGGCATCGATGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCGAACTT
258 AGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTT
* * * * *
26300 ATATCTCTAAACCCTTGGCT-GGAAGGTTTCTTTCTCGAGCTAAGTCATAACATATATAGGAGAG
323 ATATCTCTAAATCCTCGG-TAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTG
* * *
26364 TGTGGACTCTAGATCTACTAATGTTGGAACTAGAATAGAAAACACGATAATGTACATGAGATCAC
387 TGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCAC
* *
26429 ATCAGCTACGTCCCACTCCTCCTAGGCTCAAATGACATACTAGCGTGACGCTACTCTAGGCTCTA
452 ATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GCGTGAGGCTACTCTAGGCTCTA
* * * * ** * *
26494 AACCAGTCACAGTTCTAGCAATGTCTTTATTGTGCTATATGAAAACAAAACTCCTACCTCTAGAA
516 AACC-GCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAA
* * * * *
26559 ACGTAAAAGAAGACATTTGAAGAGAATGAGTATTATGCATCATTAAATTATTGATATAAAAACGT
579 ACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* * *
26624 TTATGGTTAATTGTTGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGA--G-A-A--AG-
644 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGA
* *
26682 -A-AAT-TTTTAAATAATTGTTGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAAAT-A--TA
709 AAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGA-AAATAAGGTA
* * ***** * ** ** *
26741 GTTGA-AG-GGAAAGAAAAATATAGGAATTCTTG-ACATAGTGTAGTCTGATTAGAGTGTAT-GA
773 TTTTAGAGTTTCCTGAATAA-ATA--AATAGTTGAAC-T--TGTAAACT--TT----TTTATAGA
* ** ** * * ** *
26802 A-TT-GATGGAAGAGTTGAAGGGAAAGA-AAAACA-AAATGGTGTAAGAGAAATATAGTTTGGAT
826 AGTTCTAT--AA-A----AA--GACTGACATTATATATATATTTTAA-A-AAATATA----GGA-
* * * * * * * * * * * * *
26863 TA-TTGA-TTGGAGTA--ATGAACATATTCGCA-GATACTTGA-GTCATGAGTTGGTATGTAATT
875 AACTTGACATGGTGTAGCCTG-ATAGAGT-GTATGA-A-TTGATG-GAAGAGTT-GAAGGGAA--
* *** * *** * ** *
26922 TTGATGTAGAAAATTCTCGAGT-TAGGTTCAATCA-A-TGTAAATTTAAT-
932 -AGAAAAAGAAAA---T-G-GTGTAAGAGAAAT-AGAGTTTGGA-TTATTG
* * * * * * * * ** * ***
26969 ATGGGGGTCATTAAC---T-G---GGGCA-GAG-C-TAGAGTTGTCTAGCTTTACACCTTAAACA
1 ATTGGAGTAATGAACAATTCGCATGGACATGTGTCAT-GAGTTG-GTAG--ATA-ATTTTGATGT
** * ** * * * * * *
27024 AGCATCATGT-TCCGAAAGCCAATCCATGCCTAAGATC-ATGTTGAACTCTCTAA-ATGGTAGCT
61 AG-AAAAT-TCT-CG--AG----T-TA-GGTTCA-ATCAAT-AT-AAAT-T-TAATCTGG-GGAT
** * * ** ** ** ** * * * *
27086 CTGTTAGATCGACTGGAAAAGTCTTGCCTTG---AATTTTGACAGGGTATCGACGGAGGACCTTG
109 C-GTT-GA-C-AGGGGCAGAG-CTTGAGTTGTCTAGCTTTG-CA-CCT-TAAAC-AAGCATCATG
* ** * * * * ** * *
27148 -TC-GACAAG-AACAT-C-TGACCCT-AGAGGA-CTAG-TCACTC-AAACT--TATTTC-ACTAA
165 TTCTGA-AAGCCA-ATCCATG--CCTAAGATCATGTTGAACTCTCTAAA-TGGTAGCTCTATTAG
* * * ** ** * * *** * *
27201 ATCCTCG-GTAGGAAGGTTTCT-TTCTTGAACTAAATCATA--ACAT--ATATAGGA-GTGTGTG
225 A---TCGAATGGGAAAG--TCTGGCCTTGAA-T-TTTGATAGGGCATCGACGGAGGACCT-TGTC
* *** * * ** * *
27259 GACTCTAGAAC-TACTAATGTTTGA--ACTAGA-A-TAGAAAACACGATAATGTACATGAGATCA
282 GA--CAAGAACAT-CTAACCCTAGAGGACTAGACACT--CAAAC-TTAT-ATCT-C-T-AAATC-
* * ****** * * * * * * * * * *
27319 CATCAGCTACGTCCCACTCCTCCTAG-GCTGAA--ATGACATA-CTA-GCGTGAG-GCTACTCTA
336 C-TC-GGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTG-GACTCTA
* * * * * * * * * ***
27378 GCAATGTCCTTA--TTGTGCTA-TATGAAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGA-
398 G--ATCTACTAACGTTG-G-AACTA-GAATAGAAAA---C-A---C-GGTAATGTACCTG-AGAT
* ** * *** * * *** * * * * * *
27439 CATTTGAAGAGAATGA-GTATTA-TGCATCATTAAATTATTGATAT-A-AAAATG-TTTATGGTT
449 CA---CATCAG-CT-ACGTCCCACT-CCTC-CT--AGGCTCGA-ATGACATACTGCGTGA-GGCT
* * * * ** * * * **** * * *
27499 AATTGTAGG-T-GAGA--GAAAAAG-TGTCGACAAAATGGAAGTTGA-TGAGTG-AAGATGAGAA
503 -ACTCTAGGCTCTAAACCGCCACAGATATAG-C--AAT-GCCCCT-ACT--GTGCTATATGAAAA
* *** ** * * * * * *
27557 AGAACTTTTTAAATAATTGTCGAAGAACATAAAGAGTGGAGAAGT-GTAC-AAGAGAATAAGGTA
560 AAAAC----T-CCCACCTCTAG-A-AACGT-AA-A----AGAAGTCATTCGAAGAGAATGA-GTA
* * * *
27620 TTTTAG-AGTTTCTGAATAAATAAATAGTTGA-ACTTGTAAACTTTTTTATAGAAGATCT-ATAT
611 TTAT-GTAG---C--ATTAAAT---TA-TTGATA-TAG-AAAC--GTTTAT-G--G-T-TAAT-T
** * * * * ** * * *
27682 AAAGACTGACATTATATATATA-TTTTTAAAAATATAGGAATTCTTGACATG-GTGTAGTCTGA-
656 GTAG-GTGAGA-GA-A-A-A-AGTATCGACAAA-AT-GGAA-T-TTG--ATGAGTGAAG-ATGAG
** * * *** ** * * *
27744 TTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAA-AGAAA-A-T--AAAATGGTGT--AAGAG
708 AAAGAATCT-T---TT-AAACAATTGTCGAA--GAACATAAAGAGTGGAGAA--GTGTACAAGA-
* * * ** * * *
27802 AAAT-A--TAGTTTGGATTATTGATTGGAGAAATGAACATA-TTCGCAGATACTTGAGTCATGA-
763 AAATAAGGTATTTTAGAGT-TT-CCTGAATAAAT-AA-ATAGTT----GA-ACTT--GT-A-AAC
* ** * ** * * * *
27862 GTTGGTAT-GTAA-TTTTGATGCAGAAAATTCTCGA-GTTAGGT-TCA-ATCAATATAAATTTAA
815 TTTTTTATAG-AAGTTCT-AT--A-AAAAGACT-GACATTA--TAT-ATAT-ATTTTAAA--AAA
* * *** * * * * * * * * * ***
27922 TCTGGGGGTCAATAAC-TGGGGCAGAGCTTGAGTTGTCGAGCTTTA-CACCTT-AAACAAGCA-T
868 TATAGGAAAC-TTGACATGGTG--TAGCCTGA----TAGAG-TGTATGA-ATTGATGGAAG-AGT
**** ** *** ** ** * * * *
27983 CATGTTTCGAAAG-CCAA-TCCAT-GCCTAAGA-TCAT---G-TTGAAATCTCTA
923 --TGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTAT-TG
* ** * * * ** **
28030 AAT-G-GT-A-GCTCTATTAG-ATCGA-ATG-G--AAAAGTCT--TACCTTGAATTTTGA--TAG
1 ATTGGAGTAATGAACAATTCGCATGGACATGTGTCATGAGT-TGGTA-GAT-AATTTTGATGTAG
** * * * * * * * ** * * **
28082 ---GGTATCGACTGAGGACCTTGTCGA-CAAGA-ACATCTGACCCTAGAGGA-C-TAGACA--CT
63 AAAATTCTCGAGTTAGG----T-TCAATCAATATAAAT-TTAATCT-GGGGATCGTTGACAGGGG
* * * ** * * ** * * ** *
28138 CA-AACTT-ATTTCTCTA--AATCCTCGGTAGGA-AGGTTTC-T-TTCTCG-AA-CTAAAT-CAT
121 CAGAGCTTGAGTTGTCTAGCTTTGCACCTTA-AACAAGCATCATGTTCT-GAAAGC-CAATCCAT
* * * ** * * * * * * * **
28193 AACATATATAGGAGTGTGTGGA--CTCTAGAT-CTA-CTAATGTTTGAACTAGAATAGAAAACAC
183 -GCCTA-AGATCA-TGT-TGAACTCTCTAAATGGTAGCT-CTATTAG-A-TCGAAT-G-GGA-A-
* * *** ** * ** * * *
28254 AGTAATGTACC-TG-ATATAACATCAGCTACATCCCACTCA--TCCTAGGCTCGA-ATG-ACATA
237 AGT-CTG-GCCTTGAAT-TTTGAT-AG-GGCAT-CGACGGAGGACCT-TG-TCGACAAGAACAT-
* * ** ** * ** * ** *
28313 CTGA--CTTGAGG-CTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCC-C-CTACTATG
293 CTAACCCTAGAGGACTAGAC-A--CTC-AAA-C--TTATATCTCTA--AAT-CCTCGGTAGGAAG
* * * **** * ** * * * * * *
28373 CTATATGAAAACAAAACTCCCACCTCTAGAAACGTA-AAAGAAGACAT-TAGTAGAGAAT-GAGT
348 GTTTCT-TTCTC-GAACT---AAATC-A-TAACATATATAG--GA-GTGT-GT-G-GACTCTAG-
* * * * ** *
28435 AT-TA-TATAGCATT-AAATTATTGATATAG-AAACGTTTATGGTTAATTGTAGGTGAGA-GA-A
399 ATCTACTA-A-CGTTGGAACTA--GA-ATAGAAAAC----ACGG-TAA-TGTACCTGAGATCACA
** ** * ** * ** ** ** * * *** * * ** ** *
28494 AAAG-TGTTGACAAAATAGATGTTGATGAG-TAAAGATGAGAAAGAACCTTTTAAACAATTGTCG
453 TCAGCT-ACGTCCCACT-CCTCCT-A-G-GCTCGA-ATGACATA-CTGC-GTGAGGC--TACTCT
* ** ** ** * * * **** ** * *
28557 AAGAACATAAAGAGTGGACAAGTGTACAAAACAATAAGGTATTTTAAGAGTTTCTTAAAT-AAAT
508 AGGCTC-TAAACCG-CCAC-A--G-ATATAGCAAT---G-CCCCT-ACTG-TGC-TATATGAAA-
* * *** * * ** * * * * * * *
28621 AAATAGTTGAACTTATA-AATATTTTTATAGAAGTTC-TAT-AAAAAGATTGTCATTATATATAT
559 AAAAACTCCCACCTCTAGAA-A-CGTAAAAGAAG-TCAT-TCGAAGAGAATG--AGTAT-TATGT
** * * * * * * * * * * *
28683 A-TTTTAAAAAATATAGGAAGACTTGACATG-GTGTGGCCTCATTAG-AGTGTATGAATTGTTGA
617 AGCATT--AAATTAT-TG-ATA-TAGAAACGTTTATGG-TTAATT-GTAG-G--TG-A--G-AGA
* ** * ** ** * * *** * * *
28745 AAATGTTAAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAA-ATAGAGTTTGGATTGTTGATTGGA
668 AAAAG-T--ATCGACA-AAATGGAATTTGATG--AGTGAAGAT-GAG-AAAGAATCTT--TT-AA
** * * * ** * *
28809 GTAA-TG--AAACAATTCGTATGGACTTGTGTCATG-AGTTGGTA-AGAGAAAATAAGGCATTTT
722 ACAATTGTCGAAGAA--CATAAAGA---GTG-GA-GAAG-T-GTACA-AGAAAATAAGGTATTTT
* * * * *
28869 AAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGTAAATTATTTTTCTAGAAGTTATATAAAAAG
777 -AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACT-TTTTTATAGAAGTTCTATAAAAAG
* * *
28934 ACTGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTATCCTGATAAAGTG
840 ACTGACATTATATATATATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGATAGAGTG
* * *
28999 TATGAATTGATAGAATAGTTGAAGGGAAAGAAAAAGAAAATAGTGTAAGAGAAATAGAGTTTGGA
904 TATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGA
29064 TTATTG
969 TTATTG
* *
29070 ATTGGAGTAATGAACCAATTCGCATGGACATATGTCATGAGTTGGTAGATAATTTTGATGTAGGA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * *
29135 AATTCTAGAGTTAGGTTCATTCAATATAAATTTAATCTAGGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
29200 AGTTGTCTAGCTTTGCATCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * ** * ** *
29265 GTTGAACTCTCTAAATGGTAGATCTAATAGATAGGCTGGGAAAGACTGGCCTCAAATATTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * *
29329 TGGCATTGACAGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
29394 TATCTCTAAATCCTCGGTAGGAAGG----TTTCT-----T-AATCATAAC--ATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
29447 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATATACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * *
29512 CAGCTACGTCCCACTCCTCTTAGGCTTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GCGTGAGGCTACTCTAGGCTCTAAA
* * * * *
29577 TCGACCATAGATATAGCAATTCCCCTACAGTGCTATTTG-AAAAAAACTCCCACCTCTAGAAACG
518 CCG-CCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACG
* *
29641 TAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTA
582 TAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTA
* * * *
29706 TGGTTAACTGAAGGTGAGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAAT
647 TGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAAAG
* * *
29771 AATCTTTTAAACAATAGTTGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTT
712 AATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA-TTT
* * * * * *
29836 TAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGTAAATTTTTTTTCTAGAAGTTATATAAAAAA
776 TAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA-CTTTTTTATAGAAGTTCTATAAAAAG
* *
29901 ACTGACA-T-TATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATAAAGTG
840 ACTGACATTATATATATATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGATAGAGTG
* *
29964 CATGAATTGATGGAAGAGTTGAATGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGA
904 TATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGA
30029 TTATTG
969 TTATTG
* *
30035 ATTGGAATAATGAACCAATTAGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* *
30100 AATTCTTGAGTTAGGTTCAATCAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
30165 AATTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * **
30230 GTTGAACTCTCTAAATGGTAGATCTAATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * *
30294 TGGCATTGACGGAGGACCTTATCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
* *
30359 TATCTCTAAATCCTCGGTAGGAAGGTTTCATTCTCAAACTAAATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
30424 TGGACTCTAGATCTACTAACGTTGGAAATAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * *
30489 CAGCTATGTCCCACTCCT-CTCAGGCTTGAATGACATACTG-GTTGGAGGCTACTTTAGGCTCTA
454 CAGCTACGTCCCACTCCTCCT-AGGCTCGAATGACATACTGCG-T-GAGGCTACTCTAGGCTCTA
* * * * * *
30552 AATCGACCATAGATATAGAAATTCCCCTACAGTGCTATTTG-AAAAAAACTCCCACCTCTAGAAA
516 AACCG-CCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAA
* * *
30616 CGTAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAATTGTTGATATAGAAACGTT
580 CGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTT
* *
30681 TATGGTTAACTGTAGGTGAGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAA
645 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAA
* * *
30746 ATAATCTTTTAAACAATAGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATT
710 AGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA-T
* * * * *
30811 TTTAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGTAAATTTTTTTTCTAGAAGTTATATAAAA
774 TTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA-CTTTTTTATAGAAGTTCTATAAAA
* *
30876 AGACTGACA-T-TATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATAAAG
838 AGACTGACATTATATATATATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGATAGAG
* *
30939 TGCATGAATTGATGGAAGAGTTGAATGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTG
902 TGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTG
31004 GATTATTG
967 GATTATTG
* *
31012 ATTGGAGTAATGAACCAATTCGTATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGGA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * *
31077 AATTCTAGAGTTAGGTTCATTCAATATAAATTTAATCTGGGGATCGTTGGCAGGGGAAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
31142 AGTTGTCTAGATTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * ** * ** *
31207 GTTGAACTCTCTAAATGGTAGATCTAATAGATAGGCTGGGAAAGACTGGCCTCAAATATTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * *
31271 TGGCATTGACAGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
31336 TATCTCTAAATCCTCGGTAGGAAGG----TTTCT-----T-AATCATAACATATATAGGA--GTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
31389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGAACACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * *
31454 CAGCTACGTCCCACTCCTCTTAGGCTTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GCGTGAGGCTACTCTAGGCTCTAAA
* * * * * *
31519 TCGACCATAGATATAGCAATTCCCCTACAGTGCTATTTG--AAAAAACTCCCACCTCTAAAAACG
518 CCG-CCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACG
* * *
31582 TAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACATTTA
582 TAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTA
* * * *
31647 TGGTTAACTGTAGGTGAGAGAAAAAGTATCGACAAAATGCATTTTGATGAGTGAAGATGAGAAAT
647 TGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAAAG
* * * *
31712 AATCTTTTAAACAATAGTCGAAGACCATAAAGAGAGGAGAAGTGTACAAGAAAATAAGGCATTTT
712 AATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA-TTT
* ** * *
31777 TAGAGTTTCCTGAATAAA-AAA-AGGTGAACTTGTAATTTTTTTTTCTAGAAGTTATATAAAAAG
776 TAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAA-ACTTTTTTATAGAAGTTCTATAAAAAG
* * *
31840 ACAGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATAAAGTG
840 ACTGACATTATATATATATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGATAGAGTG
* *
31905 CATGAATTGATGGAAGAGTTGAATGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGA
904 TATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGA
31970 TTATTG
969 TTATTG
* * * *
31976 ATTAGAATAATAAACCAATTAGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* *
32041 AATTCTTGAGTTAGGTTCAATCAATATAAATTTAATCTTGGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
32106 AATTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * * **
32171 GTTGAACTCTGTAAATGGTAGATCTAATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* *
32235 TGGCATTGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
*
32300 TATCTCTAAATCCTCGGTAGGAATGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
32365 TGGACTCTAGATCTACTAACGTTGGAAATAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * *
32430 CAGCTATGTCCCACTCCT-CTCAGGCTTGAATGACATACTG-GTTGGAGGCTACTTTAGGCTCTA
454 CAGCTACGTCCCACTCCTCCT-AGGCTCGAATGACATACTGCG-T-GAGGCTACTCTAGGCTCTA
* * * * * *
32493 AATCGACCATAGATATAGAAATTCCCCTACAGTGCTATTTG-AAAAAAACTCCCACCTCTAGAAA
516 AACCG-CCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAA
* * * * *
32557 CGTAAAAGAAGTCAATCGCAGTGAAAGAGTATTATATAGCATTAAATTATTGATATAGAAACGTT
580 CGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTT
* *
32622 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGATTTTGATGACTGAAGATGAGAA
645 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAA
* * * **
32687 ATAATCTTTTAAACAATTGTCGAAAAACATAAAGAGTGGAGAAGTGAACAAGAAAATAAGACATT
710 AGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATT
* * * * * * *
32752 TTAAGAGTTTCCTTAATAAAAAAATAGGTGAACTTATAAATTTTTTTTCTAGAAGTTATATAAAA
775 TT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA-CTTTTTTATAGAAGTTCTATAAAA
* ** *
32817 AGACTGACA-T-TATATATATTTTAAAAGATATAGGCCACTTGACATGGTGTAGCCTGATAAAGT
838 AGACTGACATTATATATATATTTTAAAAAATATAGGAAACTTGACATGGTGTAGCCTGATAGAGT
32880 GTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG
903 GTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG
32945 ATTATTG
968 ATTATTG
32952 ATTGGAGTAATGAACTAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAAC-AATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
*
33017 AATTCTCGAGTTAGGTTCATTCAATATAAATTTAATCT-GGGATCGTTGACAGGGG-AGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
*
33080 AGTTGTCTAGCTTTGCACCTT-AAC-ATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCA
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT-GAAAGCCAATCCATGCCTAAGATCA
* * *
33142 TGTTGAACTCTCTAAATGGTAGCTC---TAGAT--ACTGGGAAAGACTGACCTTGAA-TTTG--A
194 TGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGATA
*
33199 GGGCATCGAC-GAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTC-AACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
*
33262 TATCTCTAAATCCTTGGT-GGAAGG----TTTCT-----T-AATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
33316 T--ACTCTAGATCTACTAATGTTGGAACTAGAATAGAAAACAC-GTAATGTACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
*
33378 CAGCTACGTCCCACTCCTCCTAGGCAC--ATGACATACTGGCG-GAGGCTACT-TAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GCGTGAGGCTACTCTAGGCTCTAAA
* * * * * * *
33439 TCACCATAGATATAGCAATTCCCCTACAGTGCTATTTG-AAAAAAACTCCCACCTCTAAAAACGT
518 CCGCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACGT
* *
33503 AAAAGAAGTCAATCG-AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACATTTAT
583 AAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTAT
* * * *
33567 GGTTAACTGTAGGTGAGAGAAAAAGTGTCGACAAAATGCATTTTGATGAGTGAAGATGAG-AA-A
648 GGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAAAGA
* *
33630 AT-TTTTAAACAATTGTCGAAGACCATAAAGAG-GGAGAAGTGTACAAG-AAATAAGGCATTTTA
713 ATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTA
* * * *
33692 GA-TTTCCT-AATAAAAAAATAG-TGAACTTGT-AATTTTTTTCTAGAAG-T-TATATAAA-A--
778 GAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAAGACT
* *
33748 GACA-T-TATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATAAAGTG-AT
843 GACATTATATATATATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGATAGAGTGTAT
*
33810 GAATTGATGGAAGAGTTGAATGGAAAG-AAAA-AAAATGGTGTAAGAGAAATAGAGTTTGGATTA
907 GAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTA
33873 TTG
972 TTG
* * *
33876 ATTAGAATAAT-AACAATTAGCATGG--ATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAA
1 ATTGGAGTAATGAACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAA
*
33938 ATTCTCGAGTTAGGTTCAATCAATAT-AATTTAAT-TGGGGATCGTTGACA-GGGCAAAGCTTGA
66 ATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGA
* * *
34000 ATTGTCTAGCTTTGCACCTT--ACAATCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATG
131 GTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCATG
* * *
34063 TTGAACTCT-TAAATGGTAGATCTA-TAGAT--ACTGGGAAAGTCTGGCC-TGAATTTTGAGT-T
196 TTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TAG
34122 GGCAT-GACGGAGGACCTTGTCGACAAGAACATCT-ACCCTAGA-G----GACACTCAAACTTAT
260 GGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTAT
*
34180 ATCTCTAAATCCTC-GTAGGAATGTTT-TTTCTCGAACTAAATCATAACATATATAGGAGTGTGT
325 ATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGT
*
34243 GGACTCTAGATCTACTAACGTTGGAAATAGAATAGAAAACACGGTAATGTACCTGAGATCACATC
390 GGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATC
* *
34308 AGCTA--TCCCACTCCT-CTCAGGCTTGAATGACATACTGCG-GAGGCTACTTTAGGCTCTAAA-
455 AGCTACGTCCCACTCCTCCT-AGGCTCGAATGACATACTGCGTGAGGCTACTCTAGGCTCTAAAC
* * *
34368 CGACCATAGATATAGCAATTCCCCTAC-GTGCTATTTG-AAAAAAACTCCCACCTCTAGAAACGT
519 CG-CCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACGT
* * * * *
34431 AAAAGAAGTCAATCGCAGTGAAAGAGTATTATATAGCATTAAATTATTGATATAG-AA--TTTAT
583 AAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTAT
34493 GGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGG-ATTTGAT--GTGAAGATGAG-AA-A
648 GGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAAAGA
* * **
34553 ATCTTTTAAACAATTGTCGAAAAACATAAAGAGTGGAGAAGTG-ATAA-AAAATAAGACATTTTA
713 ATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTT-
* * * *
34616 AGAGTTTCCT-AATAAA-AAATAGGTGAACTTATAAATTTTTTTCTAGAAGTTCTATAAAAAGAC
777 AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAAGAC
** *
34679 TGACA-T-TATATATATTTT--AAAATATAGGCCACTTGACATGGTGTA-CCTGATAAAGTGTAT
842 TGACATTATATATATATTTTAAAAAATATAGGAAACTTGACATGGTGTAGCCTGATAGAGTGTAT
34739 GAATTGATGGAA-AGTTGAAGGG-AAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTA
907 GAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTA
34802 TTG
972 TTG
34805 ATTGGAGTAATGAACTAATTCGCATGGAC-T-TGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAAC-AATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
*
34868 AATTCTCGAGTTAGGTTCATTCAATATAAATTTAATCT-GGG--CGTTGACAGGGGCAGAG--TG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
34928 AGTTGTCTAGCTTTGCACCTTCAAC-ATCATCATGTT-TGAAAGCCAATCCATGCCTAAGATCA-
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * *
34990 GTTG-A-TCTCTAAA--GTATCTCTTTTAGATCGACTGGGAAAGTCT-GCCTTGAA-TTT--T--
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGATAG
35045 GGCATCGACGGAGGA-CTTGTCGAC-AGAACATCT-ACCCTAGAGGACTAGACACTC-AACTTAT
260 GGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTAT
*
35106 ATCTCTAAACTCCT-GG-ATGGAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGA--GT
325 ATCTCTAAA-TCCTCGGTA-GGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGT
* * * *
35167 GT-GACTTTAGATCTACTAATGTTGGAACTAGAATATAAAACAC-GTAATGTACATGAGA-CACA
388 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACA
* *
35229 TCAGCTACGT-CCACTCCTCCTAGGCACAAATGACATACTAGCG-GAGGCTACTCTA-GCTCTAA
453 TCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GCGTGAGGCTACTCTAGGCTCTAA
* * * * * *
35291 A---CCA-A-TTCTAG-AATG---C-ATTTTTCTATATGAAAAAAAACTCCTACCTCTAGAAACG
517 ACCGCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACG
*
35346 TAAAAGAAGTCAATTTGAAGAGAATGAGTATTA--T-GCATTAAATTATT-ATATAGAAACGTTT
582 TAAAAGAAGTC-ATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTT
35407 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAA-GG-A--T--TGA-TGAAGAT--GAAA
646 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAAA
* *
35463 GAAAT-TTTTAAACTATTGTCGAAG-A-ATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATT
711 G-AATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATT
* *
35525 TTAGAG-TT--TGAAT-AA-AAATAG-TGAACTTGTAAACTTTTTTTTCTAGAAG-T-TATATAA
775 TTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAAC--TTTTTTATAGAAGTTCTATAAAA
* *
35582 AGACT-ACA-T-TATATATATTTT-AAAAA-ATAGG--ACTTG-CATGGTGTAACCTGATAAAGT
838 AGACTGACATTATATATATATTTTAAAAAATATAGGAAACTTGACATGGTGTAGCCTGATAGAGT
* *
35639 GTATGAATTGATGG-A-AGTTGAAGGGAAAGAAAAAGAAAAT-GTGTAAGAGAAACATAGTTTGG
903 GTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG
35701 ATTATTG
968 ATTATTG
35708 ATTGGAGTAATGAACATATTCGCA-GG--ATGTGTCATGAGTTGGTAG-TAATTTTGATGTAGAA
1 ATTGGAGTAATGAACA-ATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * * *
35769 AATTCTTGAATAAGGTTCAATTAATAT-AATTTAATATGGGGAT--TT-ACTGGGGCA-AGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
** * *
35829 AG-T-TCTAGC-TTGCA-CTTGCA-AATCATCATGTT-TCGAAAGCCAATCCATTCCTAAGATCA
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT-GAAAGCCAATCCATGCCTAAGATCA
* * * *
35888 TGTTGAACTCTCT-AATGGTAGCTCTAATAGATCGAATGGGAAAGTCTGGCC-TCAATTTGGACA
194 TGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGATA
35951 GGGCAT-GACGGAGGACCTTGTCGACAAGAACATCT-ACCCTAGAGGA-TA-ACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
36012 T-TCTCTAAATCCTC-GTAGGAAGG-TT-TTT-TCGAACTAAATCATAACATATAT-GGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
* * * *
36071 TGGACTCTAGATCTACTAACGTTTGAAATAGAATACAAAACACGGTAATGTACCTGATATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
36136 CAGCTA--TCCC-CTCCT-C-AGGCT-GAATGACATACTGAC--GAGGCTACT-TAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTG-CGTGAGGCTACTCTAGGCTCTAAA
* * *
36192 TCCGCCATAGATAATAG---T--CCCTAC-ATGCTATTTG-AAAAAAACTCCCACCTCTAGAAAC
518 -CCGCCACAGAT-ATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAAC
*
36250 GT--AA-AAG-CA----AGGAGAAT-AG--TTA--T-GCATT-AATTATTGATATAGAAACGTTT
581 GTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTT
* *
36300 ATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGA-AAAA---AATTTTGATGACTGAAGATGAGAA
646 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAA-TTTGATGAGTGAAGATGAGAA
* *
36361 ATAATCTTTTAAACAATTGTC-AA-AACA-AAAGAGTGGAGAAGTGAAC-AGAAAATAA-GT-TT
710 AGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATT
* * * * *
36420 TAAGAGTTTCCTGAAGAAA-AAATAGGTGAACTTATAAA-TTTTTT-TAGAAGTTATAT-AAAAG
775 TTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAAG
36481 ACTGACATTATATATATATTTT--AAAATATAGG-AACTTGACATGGTGTAGCCTGATA-AGTGT
840 ACTGACATTATATATATATTTTAAAAAATATAGGAAACTTGACATGGTGTAGCCTGATAGAGTGT
36542 ATGAATTG-TGGAA-AGTTGAAGGG-AAGAAAAAGAAAATGGTGT-AGAGAAATAGAGTTT-GAT
905 ATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGAT
36602 TATTG
970 TATTG
36607 ATTGGAGTAATGAACGAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAAC-AATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
*
36672 AATTCTCGAGTTAGGTTCAATC-A-ATAAATTTAATATGGGG-TCGTTGACAGGGG-AGAG---G
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
**
36730 AG-TGTCTAGCTTTGCACCTTAAACAA--ATCATGTTCTGAAAGCCAATCCATTTCTAAGATCA-
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * * * * *
36791 GTT-AACTCTCT-AATAGTAGATCTAATAGATAGTATGGGAAAGACTGGCC-TCAATTTT-AT-T
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGATAG
36851 GGCATCGAC---GGACCTTGTCGACAAGAACATCT-A---T-GAGGAC-AGACACTCAAACTTAT
260 GGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTAT
36907 ATCTCTAAATCCTC-G-AGGAAGGTTTCTTTCTC-AACT-AATCATAACATATATAGGAGTGTGT
325 ATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGT
* * * *
36968 GGGCTTTAGATCTACTAACGTTTGAACTAGAATAGAAAACACGGTAATGTACCT-A-AACACATC
390 GGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATC
* *
37031 AGCTAC-TTCCACTCCTCCTA-GCTCGAATGACATACTGACATGAGGCTACTCTAGGCTCTAAAC
455 AGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTG-CGTGAGGCTACTCTAGGCTCTAAAC
* * *
37094 CG--ACAGATATAG-AATTCCCATACTATGCTAT-TG-AAAAAAACTCCCACCTCTAGAAACGTA
519 CGCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACGTA
*
37154 AAAGAA-TCATTCG--TAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATG
584 AAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATG
*
37216 GTTAATTGTAGGTGAGAG-AAAAGTATCGACAAAATGG-A-TTGATGAGTGAAGATGATAAA-AA
649 GTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAAAGAA
* * *
37277 CCTTTTAAACTATTGTCGAAG-A-ATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATTTTAA
714 TCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTT-A
* * *
37340 GAGTTTCCTAAATAAA-AAATAGTTGAAC-T-TAAA-TATTTT-TAGAAGTTATATAAAAAGA-T
778 GAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAAGACT
37399 GACATTATATATATA-TTT--AAAATATAGG-AACTTGACATGGTGTAGCCTGATAGAGTGTATG
843 GACATTATATATATATTTTAAAAAATATAGGAAACTTGACATGGTGTAGCCTGATAGAGTGTATG
* *
37460 AATTG-T-G--GAGTTGAAGGGAAAG--AAA-AAAATGGTGTATGAG--A-A-AGTTT-GATTGT
908 AATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTAT
37513 TG
973 TG
37515 ATTGGAGTAATGAAACAATTCGCATGGAC-TGTGTCATGAGTTGGTAGATAA-TTTGAATGTAGA
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTG-ATGTAGA
* * * * *
37578 AAATTCT--TGTTAGGTTCAAT-TATATTAATTTAATATGGGGATTGTTGACAGGGGCAGAGCTT
64 AAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTT
*
37640 GAGTTGTCTAGCTTTGCACCTT-AACAATCATCATGTTCTGAAAG-CAATCCATGCCTAAGATCA
129 GAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCA
*
37703 TGTTGAACTCTCTAAA---T-G-TC---T--A--G-ATGGGAAAGTCTGGCC-TCAA-TTTG--A
194 TGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGATA
*
37751 GTGGCAT-GACGGAGGACCTTGTCGACAAGAACATCT-A-CCT--ATGACT--A-A-TC-AACTT
259 G-GGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTT
37806 ATATCTCT-AATCCTCGGTA-G-A-----CTTTCTCG-AC--AATCAT-AC--ATAT--GAG-GT
323 ATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGT
*
37854 GT-GACTCTAGATC-ACTAACG-TGGAA--AGAATACAAAACA--GTAATGTACCTGAGATCACA
388 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACA
37912 TCAGCTA--TCCCACTCCT-CTCAGGCAT-GAATGACATACTGGCG-GAGGCTACT-TAGGCTCT
453 TCAGCTACGTCCCACTCCTCCT-AGGC-TCGAATGACATACT-GCGTGAGGCTACTCTAGGCTCT
* * * * *
37971 AAA-CGACCATAGATATAGCAAT-TCCCTACAGTACTATTTG-AAAAAAACTCCCACCTCTAGAA
515 AAACCG-CCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAA
* * * *
38033 AC-T-AAAGAAGTCAATC----ACAA-GAGTATTATATAGCATTAAATTATTGATATA-TAACGT
579 ACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* * *
38090 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGAAAAAATGGATTTTGATGACTGAAGATGAGA
644 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGA
* * * **
38155 AATAATCTTTTAAACAATTGTCGATA-AACA-CAA-AGTGGAGAAGTGAACAAG-AAATAAGACA
709 AAGAATCTTTTAAACAATTGTCGA-AGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA
* * * * * * * *
38216 TTTAAGA-TTTCCTGAAAAAAAAAATAGGTGAACTTATAAATTTTTTTTCTAGAAGTTATATAAA
773 TTTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA-CTTTTTTATAGAAGTTCTATAAA
* *
38280 AAGACTGACATTATATATACATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTG-TA-A
837 AAGACTGACATTATATATATATTTTAAAAAATATAGGAA-ACTTGACATGGTGTAGCCTGATAGA
38343 GTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTT
901 GTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTT
38408 GG---ATTG
966 GGATTATTG
38414 ATTGGAGTAATGAACGAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAAC-AATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
*
38479 AATTCTCGAGTTAGGTTCAATCAACATAAATTTAATCTGGGGATCGTTGACAGGGGCAAGAGCTT
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGC-AGAGCTT
**
38544 GAGTTGTCTAGCTTTGCACCTTAAACCAAGCATCATGTTCTGAAAGCCAATCCATTTCTAAGATC
129 GAGTTGTCTAGCTTTGCACCTTAAA-CAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATC
* * * * * * **
38609 ATGTTGAACTCTCTAAATTGTAGATCTAATAGATAGTATGGGAAAGACTGGCCTCAAATTTTGAG
193 ATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-
* * * *
38674 T-TGGCATTGACAGAGGACCTTGTCGACAAG-ACATCTAACTCTAGAGGACTAGAC-CTC-AACT
257 TAGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACT
38735 TATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTG
322 TATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTG
* * * *
38800 TGTGGGCTTTAGATCTACTAGCGTT-GAACTAGAATAGAAAACAC-GT-ATGTACCT-ATATCAC
387 TGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCAC
38861 ATCAGCTACGT-CC-CTCCTCCTAGGCTCGAATGACATACTGAC-TGAGGCTACTCTAGGCTCTA
452 ATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTG-CGTGAGGCTACTCTAGGCTCTA
* * *
38923 AACCGGCCACAGATCTAGCAATG-CCCTACTATGCTATATGAAAACAAAAATCCCACCTCTAGAA
516 AACC-GCCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAA
* * *
38987 ACGTAAACGAAGTCATTCGTAGAAAATGAGTATTATGTAGCATTAAATTATTG--ATAGAAA-GT
579 ACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* *
39049 TTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
644 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGA
* * *
39114 AAGAACCTTTTAAACAATTGTCGAAGAATATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTAT
709 AAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTAT
* * *
39179 TTTAAGAGTTTCCTAAAT-AATAAATAGTTGAACATATAAA-TATTTTTATAGAAGTTCTATAAA
774 TTT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACT-TTTTTATAGAAGTTCTATAAA
*
39242 AAGATTGACATTATATATATA--TTAAAAAATATAGG--ACTTGACATGGTGTAGCCTGATTAGA
837 AAGACTGACATTATATATATATTTTAAAAAATATAGGAAACTTGACATGGTGTAGCCTGA-TAGA
* *
39303 GTGTATGAATTGTTGGAA-ACGTT-AAGGGAAAG-AAAA-AAAATGGTGTATGAG-AATAGAGTT
901 GTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
* *
39363 TGAATTGTTG
965 TGGATTATTG
* *
39373 ATTGGAGTAATGAAACAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTAATGTAGAA
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * *
39438 AATTCTCTAGTTAGGTTCAATCAATATTAATTTAATATGGGGTTCGTTGACAGGGGTAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
39503 AGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCTG-AAGCAAATCCATGCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * *
39567 GTTGAACTCTCT-AAT-GTATCTCTATTAGATAGATTGGGAAAGTCT-GCC-TGAATTTTGACT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
39627 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTA
39664 TTGAGGACTA
Statistics
Matches: 18278, Mismatches: 2779, Indels: 3290
0.75 0.11 0.14
Matches are distributed among these distances:
879 28 0.00
880 61 0.00
881 41 0.00
882 56 0.00
883 104 0.01
884 35 0.00
885 10 0.00
886 26 0.00
887 24 0.00
888 7 0.00
889 3 0.00
890 22 0.00
891 9 0.00
892 32 0.00
893 63 0.00
894 56 0.00
895 53 0.00
896 93 0.01
897 94 0.01
898 87 0.00
899 111 0.01
900 162 0.01
901 231 0.01
902 183 0.01
903 192 0.01
904 162 0.01
905 75 0.00
906 110 0.01
907 137 0.01
908 71 0.00
909 23 0.00
910 25 0.00
911 32 0.00
912 115 0.01
913 125 0.01
914 74 0.00
915 69 0.00
916 95 0.01
917 68 0.00
918 21 0.00
919 103 0.01
920 109 0.01
921 16 0.00
922 60 0.00
923 56 0.00
924 165 0.01
925 91 0.00
926 174 0.01
927 97 0.01
928 181 0.01
929 243 0.01
930 48 0.00
931 103 0.01
932 32 0.00
933 10 0.00
934 13 0.00
935 6 0.00
936 3 0.00
937 13 0.00
938 22 0.00
939 30 0.00
940 3 0.00
941 8 0.00
942 103 0.01
943 74 0.00
944 17 0.00
945 9 0.00
946 13 0.00
947 5 0.00
948 52 0.00
949 51 0.00
950 46 0.00
951 60 0.00
952 67 0.00
953 14 0.00
954 44 0.00
955 4 0.00
956 55 0.00
957 54 0.00
958 37 0.00
959 215 0.01
960 44 0.00
961 48 0.00
962 117 0.01
963 72 0.00
964 703 0.04
965 614 0.03
966 7 0.00
967 149 0.01
968 319 0.02
969 221 0.01
970 30 0.00
971 200 0.01
972 166 0.01
973 212 0.01
974 412 0.02
975 449 0.02
976 889 0.05
977 1444 0.08
978 546 0.03
979 622 0.03
980 1372 0.08
981 861 0.05
982 96 0.01
983 24 0.00
984 39 0.00
985 17 0.00
986 20 0.00
987 12 0.00
988 11 0.00
989 16 0.00
990 20 0.00
991 21 0.00
992 29 0.00
993 18 0.00
994 11 0.00
995 9 0.00
996 22 0.00
997 20 0.00
998 13 0.00
999 26 0.00
1000 39 0.00
1001 31 0.00
1002 45 0.00
1003 30 0.00
1004 35 0.00
1005 58 0.00
1006 8 0.00
1007 12 0.00
1008 16 0.00
1009 14 0.00
1010 11 0.00
1012 3 0.00
1013 21 0.00
1014 18 0.00
1015 27 0.00
1016 16 0.00
1017 39 0.00
1018 17 0.00
1019 30 0.00
1020 20 0.00
1021 19 0.00
1022 31 0.00
1023 23 0.00
1024 23 0.00
1025 22 0.00
1026 19 0.00
1027 36 0.00
1028 34 0.00
1029 33 0.00
1030 38 0.00
1031 20 0.00
1032 20 0.00
1033 38 0.00
1034 63 0.00
1035 49 0.00
1036 33 0.00
1037 20 0.00
1038 28 0.00
1039 36 0.00
1040 58 0.00
1041 65 0.00
1042 36 0.00
1043 61 0.00
1044 63 0.00
1045 53 0.00
1046 66 0.00
1047 70 0.00
1048 52 0.00
1049 56 0.00
1050 58 0.00
1051 61 0.00
1052 59 0.00
1053 53 0.00
1054 38 0.00
1055 49 0.00
1056 36 0.00
1057 36 0.00
1058 36 0.00
1059 31 0.00
1060 29 0.00
1061 18 0.00
1062 16 0.00
1063 12 0.00
1064 10 0.00
1065 9 0.00
1066 2 0.00
1067 6 0.00
1068 29 0.00
1069 6 0.00
1070 21 0.00
1071 33 0.00
1072 15 0.00
1073 19 0.00
1074 13 0.00
1075 7 0.00
1076 4 0.00
1077 4 0.00
1078 4 0.00
1079 5 0.00
1080 11 0.00
1081 12 0.00
1082 16 0.00
1083 3 0.00
1084 16 0.00
1085 27 0.00
1086 30 0.00
1087 42 0.00
1088 22 0.00
1089 25 0.00
1090 33 0.00
1091 16 0.00
1092 10 0.00
1093 12 0.00
1094 7 0.00
1095 12 0.00
1096 1 0.00
1099 2 0.00
1100 6 0.00
1102 4 0.00
1106 3 0.00
1107 7 0.00
1108 8 0.00
1109 30 0.00
1110 10 0.00
1111 14 0.00
1112 12 0.00
1113 7 0.00
1114 11 0.00
1115 11 0.00
1116 5 0.00
1117 24 0.00
1118 16 0.00
1119 14 0.00
1120 6 0.00
1121 5 0.00
1122 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (974 bp):
ATTGGAGTAATGAACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAA
ATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGA
GTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCATG
TTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGATAGG
GCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATA
TCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTG
GACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCA
GCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTGCGTGAGGCTACTCTAGGCTCTAAACCG
CCACAGATATAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACGTAAA
AGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGT
TAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAATTTGATGAGTGAAGATGAGAAAGAATC
TTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAGAG
TTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAAGACTGAC
ATTATATATATATTTTAAAAAATATAGGAAACTTGACATGGTGTAGCCTGATAGAGTGTATGAAT
TGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTG
Found at i:22091 original size:217 final size:218
Alignment explanation
Indices: 21695--22125 Score: 688
Period size: 217 Copynumber: 2.0 Consensus size: 218
21685 GTTGAACTTA
* * * *
21695 TAAATATTTTTATAGAAGTTCTATAAAAAGATTGTCATTATATATATATTTTAAAAAATATAGGA
1 TAAATATTTTTATAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAAATATAGAA
* * *
21760 AGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGTTGAAAACGTTAAAGGGAAAGAAAA
66 ACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGTAGAAAACGTTAAAGGGAAAGAAAA
* *
21825 AGAAAATGGTGTAAGAGAAATAGAGTTTGGATTGTTGATTGGAGTAATGAAACAATTCGTATGGA
131 AGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACAATTCGCATGGA
*
21890 CTTGTGTCATGAGTTGGTAACAG
196 CATGTGTCATGAGTTGGTAACAG
* *
21913 TAAATTATTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGA
1 TAAA-TATTTTTATAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAAATATAGA
* *
21978 AACACTTGACATGGTGTATCCTGA-TAAAGTGTATGAATTGATAGAAAA-GTTGAAGGGAAAG-A
65 AACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTG-TAGAAAACGTTAAAGGGAAAGAA
*
22040 AAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATG
129 AAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACAATTCGCATG
22105 GACATGTGTCATGAGTTGGTA
194 GACATGTGTCATGAGTTGGTA
22126 GATAATTTTG
Statistics
Matches: 196, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
217 83 0.42
218 31 0.16
219 82 0.42
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (218 bp):
TAAATATTTTTATAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAAATATAGAA
ACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGTAGAAAACGTTAAAGGGAAAGAAAA
AGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACAATTCGCATGGA
CATGTGTCATGAGTTGGTAACAG
Found at i:24327 original size:976 final size:975
Alignment explanation
Indices: 21914--39663 Score: 17095
Period size: 976 Copynumber: 18.5 Consensus size: 975
21904 TGGTAACAGT
*
21914 AAATTATTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGAA
1 AAATT-TTTTTCTAGAAGTTATATAAAAAGACTGACA-T-TATATATATTTTAAAAGATATAGGA
* * *
21979 ACACTTGACATGGTGTATCCTGATAAAGTGTATGAATTGATAGAAAAGTTGAAGGGAAAG-AAAA
63 ACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAA
22043 GAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGAC
128 GAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGAC
* * *
22108 ATGTGTCATGAGTTGGTAGATAATTTTGATGTAGGAAATTCTAGAGTTAGGTTCATTCAATATAA
193 ATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
*
22173 ATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAATCAAGC
258 ATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGC
* * *
22238 ATCATGTTCTGAAAGCCAATCCATTCCTAAGATAATGTTGAACTCTATAAAGGGTAGATCTAATA
323 ATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATA
* * * *
22303 GATAGTCTAGGAAAGACTGGCCTCAAA-TTTGAGTTGGCATTTACGGAGGACCTTGTCGACAAGA
388 GATAG-ATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGA
*
22367 ACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGAAAGG----T
452 ACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCT
22428 TTCT-----T-AATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
517 TTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
* *
22487 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCCTCTTAGGCTTGAA
582 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAA
*
22552 TGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCACTTCCCCTACAG
647 TGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAG
** *
22617 TGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCT-CAGAGATTGAGAAT
712 TGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAAT-TGCAGAGAAAGAGTAT
*
22681 TATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAACTGTAGGTGAGAGAAAAAGTATC
776 TATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATC
* * *
22746 GAAAAAAATGGATTTTGATGAGTGAAGATAAGAAATAATCTTTTAAACAATAGTCGAAGAACATA
841 G-ACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATA
*
22811 AAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTTAGAGTTTCCTGAATAAAAAAATAGGTGA
905 AAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAAT-AAAAAATAGGTGA
*
22876 ACTTGT-
969 ACTTATA
22882 AAATTTTATTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAAC
1 AAATTTT-TTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAAC
* * * *
22947 ACTTGACATGGTGTAGCCTTATAAAGTGCATGAATTGATGGAAGTGTTGAATGGAAAGAAAAAGA
65 ACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGA
* * *
23012 GAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACTAATTAGCATGGACAT
130 AAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACAT
* * *
23077 ATGTCATGAGTTGGTAGGTAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAATCAATATAAAT
195 GTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAAT
* * *
23142 TTAATCTGGGGATCGTTGATAGGGGCCGAGCTTGAATTGTCTAGCTTTGCACCTTAAACAAGCAT
260 TTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCAT
*
23207 CATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTTAATGGTAGATCTAATAGA
325 CATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGA
*
23272 TAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGGCAAGAAC
390 TAGA-TGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAAC
* *
23337 ATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTTTAAATCCTCGGTAGAAAGGTTTCTTT
454 ATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTT
* *
23402 CTCGAATTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAATAGA
519 CTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGA
*
23467 ATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCCTCTCAGGCTTGAATG
584 ATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAATG
* *
23532 ACATGCTGGCGGGAGGCTTCTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGTG
649 ACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGTG
* *
23597 CTATTTTAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGCGAAAGAGTATTAT
714 CTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTATTAT
*
23662 GTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTATAGGTGAGAGAAAAAGTATCGAC
779 GTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGAC
23727 AAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAAGA
844 AAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAAGA
* * * *
23792 GTGGAGAAGTGAACAAGAAAATAAGACATTTTAATAGTTTCCTGAATAAAAAATATGTGAACTTA
909 GTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAATAGGTGAACTTA
23857 TA
974 TA
23859 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
*
23924 CTTGACATGGTGTAGCCTAATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAA
66 CTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAA
23989 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATG
131 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATG
24054 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
196 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
24119 TAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATC
261 TAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATC
*
24184 ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATTGTAGATCTAATAGAT
326 ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGAT
* *
24249 AGTATGGGAAAGACTGGCCTCAAATTTTGAGTTGGCATTGACGAAGGACCTTGTCGACAAGAACA
391 AG-ATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAACA
*
24314 TCTAACTCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTC
455 TCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTC
* *
24379 TCGAACTAAATCATAACATATATAGGAGTGTGTGGACTTTAGATCTACTAGCGTTGGAACTAGAA
520 TCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAA
* * * * * *
24444 TAGAAAACATGGTAATGTACCTAATATCACATCAGCTACGTCCCCCTCCTC-CTAAGCTCGAATG
585 TAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTC-AGGCTTGAATG
** * * * * * * *
24508 ACATACTGAG-ATGAGACTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCCCCTACTA-
649 ACATACTG-GCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTAC-AG
* * *
24571 TGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAATGAAGTC-ATTCGTAGA-AAATGAG
712 TGCTATTTG-AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATT-GCAGAGAAA-GAG
*
24634 TATTATGTAGCATTAAATTATTGATATAGAAATGTTTATGGTTAATTGTAGGTGAGAGAAAAAGT
773 TATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGT
* ** * *
24699 GTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACA
838 ATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACA
* * * *
24764 TAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATTTTAAGAGTTTCCTAAATAAATAAATAGTT
903 TAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAA-AAATAGGT
*
24829 GAACATAT-
967 GAACTTATA
* * * * *
24837 AAATATTTTTATAGAAGTTCTATAAAAAGATTGACATTATATATATATATTAAAAAATATAGGAA
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATAT-T-TTAAAAGATATAGGAA
* * *
24902 GACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGTTGGAA-ACGTTGAAGGGAAAGAAAA
64 CACTTGACATGGTGTAGCCTGA-TAAAGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAA
* * * *
24966 A-AAAATGGTGTATGAGAAATAGAGTTTGAATTGTTGATTGGAGTAATGAAACAATTCGCATGGA
127 AGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGA
* * * * * *
25030 CTTGTGTCATCATTTGGTAGATAATTTTAATGTAGAAAATTCTCTAGTTAGGTTCAATCAATATT
192 CATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATA
* * * * *
25095 AATTTAATATGGGGGTCATTGACAGGGGTAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAT
257 AATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAG
* * ** ** *
25160 CATCATGTTCTGAAAGCAAATCCATGCCTAAGATCATGTTGAACTCTCTAAACAGTATCTCTATT
322 CATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAAT
* ** * * * *
25225 AGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACAGAGGACCTTGTCGACAAG
387 AGATAGA-TGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAG
* * * ***
25290 AACATCT-A---TTGAGCACTAGACACTCGAACTTATATCTCTAAATCCTCTACAGGAAGGTTTC
451 AACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTC
* *
25351 TTTCTCAAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACT
516 TTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACT
* *
25416 AGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTTAGGCTTGA
581 AGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGA
* * * ** *
25481 ATGACATACTGGAGGGAGGCTACTCTAGGCTCTAAACCGACCATAGATATATAAATTCCCCTACT
646 ATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACA
* * * ** * *
25546 GTACTATTTGAAAAAAACTCCCATCTCTAGAAACATAAAAGAAGTCAATCACAAAGAATGAGTAT
711 GTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTAT
*
25611 TATGTAACATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATC
776 TATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATC
*
25676 GACATAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAA
841 GACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAA
* * * *
25741 AGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT-AGAGTTT-CTGAATAAATATATAGTTGAA
906 AGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAA-AAATAGGTGAA
*
25804 CTTTTA
970 CTTATA
* * * * * *
25810 AACTTTTTTTATAGAAGATCTATATAAAGACTGACATTACATATATATATTTTTAAAAAATATAG
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACA-T---TATATATA-TTTTAAAAGATATAG
** * * * *
25875 GAAGTCTTGACATGGTGTAGTCTGTTTAGAGTGTATGAATTGATGGAAGAGTTAAAGGGAAAG-A
61 GAACACTTGACATGGTGTAGCCTG-ATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAA
* *
25939 AAA-AAAATGGTGTAAGAGTAATAGAGTTTGGATTATTGATTGGAGTAATGAACGAATTCGCATG
125 AAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATG
*
26003 GACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAATCAATA
190 GACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATA
* * *
26068 TAACTTTAATCTGGGGATCGTTGGCAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTCAACA
255 TAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACA
* * * *
26133 ATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCATGTTGATCTCTCTAAATGGTAGCTCT
320 AGCATCATGTTCT-GAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCT
** ** * *** * *
26197 TTTAGATCA-ACTGGGAAAGTCTGGCCTTGAATTTTTAAAGGGCATCGATGGAGGACCTTGTCGA
384 AATAGAT-AGA-TGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGA
* * * *
26261 CATGAACATCTAACCCTAGAGGACTAGACACTCGAACTTATATCTCTAAACCCTTGGCT-GGAAG
447 CAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGG-TAGGAAG
* * * *
26325 GTTTCTTTCTCGAGCTAAGTCATAACATATATAGGAGAGTGTGGACTCTAGATCTACTAATGTTG
511 GTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTG
* *
26390 GAACTAGAATAGAAAACACGATAATGTACATGAGATCACATCAGCTACGTCCCACTCCTC-CTAG
576 GAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTC-AG
** * * * * * * * * *
26454 GCTCAAATGACATACTAGCGTGACGCTACTCTAGGCTCTAAA-CCAGTCACAGTTCTAGCAATGT
640 GCTTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGA-CCATAGATATAGCAAT-T
** ** * * * * *
26518 -CTTTATTGTGCTATATGAAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTTGAAGA
703 CCCCTACAGTGCTATTTG-AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGA
* * * * *
26582 GAATGAGTATTATGCATCATTAAATTATTGATATAAAAACGTTTATGGTTAATTGTTGGTGAGAG
766 GAAAGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAG
* ** * *
26647 AAAAAGTGTCGACAAAATGGAAGTTGATGA--G-A-A--AG--A-AAT-TTTTAAATAATTGTTG
831 AAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCG
*
26702 AAGAACATAAAGAGTGGAGAAGTGTACAAGAGAAATATA-G---TTGAAG-G------GAA-AGA
896 AAGAACATAAAGAGTGGAGAAGTGTACAAGA-AAATA-AGGCATTTTAAGAGTTTCCTGAATA-A
* * *
26755 AAAATATAG-GAA-TTCTTG
958 AAAATA-GGTGAACTT-ATA
* ** * ** * * ** * * * ** *
26773 ACA---TAGTGTAG-TCTGAT-TAGAGTGTA-TGA-ATTGATGGA-AGAGTTGAAGGGA-A-AGA
1 AAATTTTTTTCTAGAAGTTATATAAAAAG-ACTGACATT-AT--ATATATTTTAAAAGATATAGG
* * * **** * * *
26828 AAAAC--AAAATGGTGTAAGAGAAATATAGT-T-TGGATTATTGATTG--GAG-T-AA-TGAACA
62 AACACTTGACATGGTGT-AGCCTGATAAAGTGTAT-GA--ATTGATGGAAGAGTTGAAGGGAA-A
* *** * * ** **
26884 -TATTCGCAGATACT-T--GAGTCAT-GAG-TTGGTATGTAATT--TT-GATGT-A-GAA--AAT
122 GAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG-AT-T-ATTGATTGGA-GTAATGAACCAAT
* ** * * * * * * ** ** * *** *
26936 TCTC--GAGTTAGGT-TCAATCA-AT-GTAAATTTAATATGGGGGTCATTAACTGGGGCAGAGCT
183 TCGCATG-GACATGTGTC-ATGAGTTGGTAGA--TAATTTTGATGT-AGAAAAT-TCTC-GAGTT
* * * ** * ** * * * **
26996 AGAGTT--GTCTAGCTTTACACCTTAAAC-AAGCATCATGTTCCGA-A-AGCCA-A--TCCA--T
241 AG-GTTCAATC-A-ATATA-AATTTAATCTGGGGATC--GTT--GACAGGGGCAGAGCTTGAGTT
* * ** * ** **
27051 GCCTAAGATCATGTTGAACTCTCTAAATGGTAGC-TC-TGTTAGATCGACTGGAAAAGT-C-TTG
298 GTCT-AG--C-T-TTGCAC-CT-TAAA--CAAGCATCATGTT--CT-GA-AAGCCAA-TCCATT-
* * *** * ** * * ** * * **
27112 CCT-TGA--ATTTTGACAGGGTATCGACGG-AGGACCTTGTCGACAAGAACATCTGACCCTAGAG
348 CCTAAGATCATGTTGA-ACTCTCTAAATGGTA-GATCTAATAGA-TAG---ATGGGA----A-A-
* * * * *** * * ** **
27173 GACTAGTCACTCAAACTTATTTCACTAAATCCTCGGTA-GGAAGGTTTCTT-TCTTGA-ACTAA-
401 GTCT-GGC-CTCAAA--T-TTTGAGT-TGGCAT-TG-ACGG-AGG-ACCTTGTC--GACAAGAAC
** * * * ** * * * * *
27234 ATCATAACATATATAGGAGTGTGTGGACTCTAGAAC-TACTAATGTTTGAA--CTAGAATA-GAA
454 ATC-TAAC-CCTAGAGGACT-AG-ACACTC-A-AACTTA-T-ATCTCTAAATCCTCG-GTAGGAA
**** * ** * * * * ** *** * * * * *
27295 -AACACGATAAT-GTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGG-CT-GAAATGAC
510 GGTTTC-TTTCTCGAAC-T-AAATCATAACA--TATATAGGAGT-GT-GT-GGACTCTAGAT--C
* * *** * *** ** * * * * * * **
27356 ATACTAGCG-T-GAGGCTACTCTAGCAATGTCCTTATTGT-GCT-ATATGAAAACA-AAAC-TCC
565 -TACTAACGTTGGA-ACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCC
* * * * * * * ** ** * *
27415 TA--CCTCT-AGAAACGTAAAAGA-AGACATTTG-AAGAGAATGAGTATTATGCATCATTAAAT-
628 CACTCCTCTCAG--GCTTGAATGACATAC--TGGCGGGAGGCT-ACT-TTAGGC-TC--TAAATC
* * ** **** * ** * * * ***
27474 ---TATTGATATAAAAATGTTTATGGTTA-ATTG-TAGGTGAGAGAAAAAGTGTCGA-CAAAATG
684 GACCATAGATATAGCAA---TT-CCCCTACAGTGCTATTTGA-A-AAAAACT-CCCACCTCTA-G
* ** * * * *
27533 GAA-GTTGATG-AGTGAA--G-ATGAGAAAGA--ACT-T-T----TTAAATAATTG-TCGA-AG-
741 AAACGTAAAAGAAGTCAATTGCA-GAGAAAGAGTATTATGTAGCATTAAATTATTGAT--ATAGA
* ** ** * ** * *** * * *
27582 AACATAAAGAGTGGAGAAGTGTA--CAAGAGAATAAGGTAT--TTTAGA--G-TTTCTGAATAAA
803 AACGT--TTA-TGGTTAATTGTAGGTGAGAGAA-AAAGTATCGACAAAATGGATTT-TG-ATGAG
* * ** * * * * *
27640 T-AA-AT-AG--TTGAA-CTTGTAAACTTTTTTATAGAAGATCTATATAAAGACT-GACATTA-T
862 TGAAGATGAGAAAT-AATCTTTTAAAC--AATTGTCGAAGA---ACATAAAGAGTGGAGA--AGT
* * * * * * ***
27697 ATATATATTTTTAAAAATATAGGAATTCTTGACATG-GTGTAGT-CTGATTAGAGTGTA--TGAA
919 GTACA-A-----GAAAATA-AGGCATT-TT-A-A-GAGT-T--TCCTGAATAAAAAATAGGTGAA
27758 -TTGATGGA
970 CTT-AT--A
* * ****** * * * * ** * * ** ** *
27766 AGAGTTGAAGGGA-AAG-AAAATAAAATG-GTGTA-AGAGAAATATAGTTTGGATTATTGATTGG
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTG-ACA-TTATATATATTTTAAAAGA-T-ATAGG
* ** * * * * *
27827 AGA-A-ATGAACATATTCGCAGATACTTGAGTCATGAGTTGGTATGTAATTTTGATGCAGAAAAT
62 A-ACACTTG-ACATGGT-GTAG---CCTGA-T-A-AAG-T-GTATG-AA--TTGATG--GAAGAG
** ** * * * ** * ** * * * ** *
27890 TCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCAATA-ACTGGGGCA-GAGCTTGA
111 T-T-GA---AGG-GAAAGAAAAAGAAA-ATGGTGTAAGAG-AAATAGAGTTTGG-ATTA--TTGA
* ** * * * * * *
27953 GTTGTCGAGCT--TTACACC--TTAAACAAGCATCATGTTTCGAAAGCCAATCCATGCCTAAGAT
165 -TTG--GAG-TAATGA-ACCAATT-CGCATGGA-CATGTGTC--ATG--AGT---TG-GT-AGAT
* * * ** * * ** * * * *
28014 CATGTTGAAATCT-CTAAATGGTAGCTCTA-TTA-GATCGAATGGA-A-AAGTCTT-ACCT-TGA
214 AATTTTG--ATGTAGAAAAT--T--CTCGAGTTAGGTTC-AATCAATATAAAT-TTAATCTGGGG
* * * * * * *
28072 AT-TTTGATA-GGGTATCGA-C-TGAGGACCTTGTCGACAAGAACATCTG-ACCCTAGAGGACTA
271 ATCGTTGACAGGGGCA--GAGCTTGA-G---TTGT---CTAG--C-TTTGCACCTTA-A--ACAA
* ** * * * * *** *
28132 G-A-CA----CTCAAA-CTTAT---TTCTCTAA-ATCCTCGGTAGGAAGGTTTCTTTCTCGAACT
321 GCATCATGTTCTGAAAGCCAATCCATTC-CTAAGATCAT--GT-TGAA-CTCTCTAAAT-G--GT
* * * * ** * ** * * *
28186 AAATCATAACATATATAGGAGTGTGTG-GACTCTAGATCTACTAATGTTTGAACTAGAATAGAAA
378 AGATC-T-A-ATAGATA-GA-TG-G-GAAAGTCT-GGCCT-CAAAT-TTTGAGTTGGCATTG---
* * ** * * * *
28250 ACACAGTAATGTACC-TGATATAACATCAGCTACATCCCACTCATCCTAG-GCTCGAAT-GACA-
430 --AC-G-GA-GGACCTTG-T-CGACA--AG-AACAT----CTAACCCTAGAG---GACTAGACAC
** * * * * * *
28311 TACTGACTTGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCCCCTACTATGCTA
478 T-CAAACTT-A---TA---T---CTCTAAA---TCCTC-G--GTAGGAA-G---GT--T-T-CTT
* * * * * * *
28376 TAT-GAAAACAAAACTCCCACCTCTAGAAACGTA-AAAGAAGACAT-TAGTAGAGAAT-GAGTAT
518 TCTCG--AACTAAA-T--CA----T---AACATATATAG--GA-GTGT-GT-G-GACTCTAG-AT
* * * * ** * **
28437 -TA-TATAGCATT-AAATTATTGATATAG-AAACGTTTATGGTTAATTGTAGGTGAGA-GA-AAA
564 CTACTA-A-CGTTGGAACTA--GA-ATAGAAAAC----ACGG-TAA-TGTACCTGAGATCACATC
** **** * * * *** **
28496 AG-T--GT-TGAC-AAAAT-AGATG-TTG-ATGAGTAAAGATGAGAAAGAACCTTTTAAACAATT
618 AGCTACGTCCCACTCCTCTCAG--GCTTGAATGA-CATA-CTG-GCGGGAGGC---T--AC--TT
* ** * * * * * **** * * **
28553 GTCGAAGAACATAAAGAGTGGACAAGT-GTACAAAACAATAAGGTATTTTAAGAGTTTCTTAAAT
671 -T--AGGCTC-T-AA-A-TCGACCA-TAG-ATATAGCAAT----TCCCCT-ACAG-TGC-TATTT
* *** * * ** * * *
28617 -AAATAAATAGTTGAACTTATA-AATATTTTTATAGAAGTTCTA-T--A-A-AAAGATTGTCATT
720 GAAA-AAA-ACTCCCACCTCTAGAA-A-CGTAAAAGAAG-TCAATTGCAGAGAAAGA--GT-ATT
* * ** *** * *
28675 ATATA-TA-TATTTTAAAAAATATAGGAAGAC-TTGACATGGTGTGGCCTCATTAG-AGTGTATG
777 ATGTAGCATTAAATT-ATTGATATA-GAA-ACGTT--TAT-G-GT----TAATT-GTAG-G--TG
* * ** * ** ** *
28736 AATTGTTGAAAATGTTAAAGGGAAAGAAAAAGA---AAATG-GTGTA-A-GAGAAATAGAGT-TT
827 -A--G-AGAAAAAG-T--ATCGACA-AAATGGATTTTGATGAGTGAAGATGAGAAATA-A-TCTT
**** ** ** *
28794 GGATT-GTTGATTGGAGTAATGAAACAATTCGTATGGACTTGTGTCATG-AGTTGGTA-AGAGAA
882 ---TTAAACAATTGTCG-AA-G-AAC-A----TAAAGA---GTG-GA-GAAG-T-GTACA-AGAA
*
28856 AATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGT-
928 AATAAGGCATTTTAAGAGTTTCCTGAAT-AAAAAATAGGTGAACTTATA
28904 AAATTATTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGGA
1 AAATT-TTTTTCTAGAAGTTATATAAAAAGACTGACA-T-TATATATATTTTAAAAGATATAGGA
* * *
28969 ACACTTGACATGGTGTATCCTGATAAAGTGTATGAATTGATAGAATAGTTGAAGGGAAAGAAAAA
63 ACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAA
*
29034 GAAAATAGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGAC
128 GAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGAC
* * * *
29099 ATATGTCATGAGTTGGTAGATAATTTTGATGTAGGAAATTCTAGAGTTAGGTTCATTCAATATAA
193 ATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
* *
29164 ATTTAATCTAGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCATCTTAAACAAGC
258 ATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGC
29229 ATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATA
323 ATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATA
* * * *
29294 GATAGGCTGGGAAAGACTGGCCTCAAATATTGAGTTGGCATTGACAGAGGACCTTGTCGACAAGA
388 GATA-GATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGA
29359 ACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGG----T
452 ACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCT
29420 TTCT-----T-AATCATAAC--ATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
517 TTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
* *
29477 GAATAGAAAACACGGTAATATACCTGAGATCACATCAGCTACGTCCCACTCCTCTTAGGCTTGAA
582 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAA
29542 TGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAG
647 TGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAG
* *
29607 TGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGTATT
712 TGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTATT
* *
29672 ATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAACTGAAGGTGAGAGAAAAAGTATCG
777 ATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCG
* *
29737 ACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATAGTTGAAGAACATAAA
842 ACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAA
*
29802 GAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTTAGAGTTTCCTGAATAAAAAAATAGGTGAAC
907 GAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAAT-AAAAAATAGGTGAAC
*
29867 TTGTA
971 TTATA
* *
29872 AATTTTTTTTCTAGAAGTTATATAAAAAAACTGACATTATATATATTTTAAAAGATATAGGAACA
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
* *
29937 CTTGACATGGTGTAGCCTGATAAAGTGCATGAATTGATGGAAGAGTTGAATGGAAAGAAAAAGAA
66 CTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAA
* *
30002 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAATAATGAACCAATTAGCATGGACATG
131 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATG
*
30067 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAATCAATATAAATT
196 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
* *
30132 TAATATGGGGATCGTTGACAGGGGCAGAGCTTGAATTGTCTAGCTTTGCACCTTAAACAAGCATC
261 TAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATC
30197 ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGAT
326 ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGAT
*
30262 AGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTATCGACAAGAACA
391 AGA-TGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAACA
*
30327 TCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCATTC
455 TCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTC
* *
30392 TCAAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAATAGAA
520 TCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAA
*
30457 TAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCCTCTCAGGCTTGAATGA
585 TAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAATGA
** *
30522 CATACTGGTTGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGAAATTCCCCTACAGTGC
650 CATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGTGC
* *
30587 TATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGTATTATG
715 TATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTATTATG
* *
30652 TAGCATTAAATTGTTGATATAGAAACGTTTATGGTTAACTGTAGGTGAGAGAAAAAGTATCGACA
780 TAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACA
*
30717 AAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATAGTCGAAGAACATAAAGAG
845 AAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAAGAG
* *
30782 TGGAGAAGTGTACAAGAAAATAAGGCATTTTTAGAGTTTCCTGAATAAAAAAATAGGTGAACTTG
910 TGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAAT-AAAAAATAGGTGAACTTA
30847 TA
974 TA
*
30849 AATTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
* *
30914 CTTGACATGGTGTAGCCTGATAAAGTGCATGAATTGATGGAAGAGTTGAATGGAAAGAAAAAGAA
66 CTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAA
*
30979 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGTATGGACATG
131 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATG
* * *
31044 TGTCATGAGTTGGTAGATAATTTTGATGTAGGAAATTCTAGAGTTAGGTTCATTCAATATAAATT
196 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
* * *
31109 TAATCTGGGGATCGTTGGCAGGGGAAGAGCTTGAGTTGTCTAGATTTGCACCTTAAACAAGCATC
261 TAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATC
31174 ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGAT
326 ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGAT
* * * *
31239 AGGCTGGGAAAGACTGGCCTCAAATATTGAGTTGGCATTGACAGAGGACCTTGTCGACAAGAACA
391 A-GATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAACA
31304 TCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGG----TTTC
455 TCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTC
31365 T-----T-AATCATAACATATATAGGA--GTGTGGACTCTAGATCTACTAACGTTGGAACTAGAA
520 TCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAA
* *
31422 TAGAAAACACGGTAATGTACCTGAGAACACATCAGCTACGTCCCACTCCTCTTAGGCTTGAATGA
585 TAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAATGA
31487 CATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGTGC
650 CATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGTGC
* * *
31552 TATTTG-AAAAAACTCCCACCTCTAAAAACGTAAAAGAAGTCAATCGCAGAGAATGAGTATTATG
715 TATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTATTATG
* *
31616 TAGCATTAAATTATTGATATAGAAACATTTATGGTTAACTGTAGGTGAGAGAAAAAGTATCGACA
780 TAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACA
* * *
31681 AAATGCATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATAGTCGAAGACCATAAAGAG
845 AAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAAGAG
* * *
31746 AGGAGAAGTGTACAAGAAAATAAGGCATTTTTAGAGTTTCCTGAATAAAAAA-AGGTGAACTTGT
910 TGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAATAGGTGAACTTAT
31810 A
975 A
** *
31811 ATTTTTTTTTCTAGAAGTTATATAAAAAGACAGACATTATATATATATTTTAAAAGATATAGGAA
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACA-T-TATATATATTTTAAAAGATATAGGAA
* *
31876 CACTTGACATGGTGTAGCCTGATAAAGTGCATGAATTGATGGAAGAGTTGAATGGAAAGAAAAAG
64 CACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAG
* * * *
31941 AAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTAGAATAATAAACCAATTAGCATGGACA
129 AAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACA
*
32006 TGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAATCAATATAAA
194 TGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
* *
32071 TTTAATCTTGGGATCGTTGACAGGGGCAGAGCTTGAATTGTCTAGCTTTGCACCTTAAACAAGCA
259 TTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCA
*
32136 TCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTGTAAATGGTAGATCTAATAG
324 TCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAG
32201 ATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAA
389 ATAGA-TGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAA
*
32266 CATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAATGTTTCTT
453 CATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTT
*
32331 TCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAATAG
518 TCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAG
*
32396 AATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCCTCTCAGGCTTGAAT
583 AATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAAT
** *
32461 GACATACTGGTTGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGAAATTCCCCTACAGT
648 GACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGT
* *
32526 GCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGTGAAAGAGTATTA
713 GCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTATTA
*
32591 TATAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGA
778 TGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGA
* *
32656 CAAAATGGATTTTGATGACTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAAAACATAAAG
843 CAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAAG
* * *
32721 AGTGGAGAAGTGAACAAGAAAATAAGACATTTTAAGAGTTTCCTTAATAAAAAAATAGGTGAACT
908 AGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAAT-AAAAAATAGGTGAACT
32786 TATA
972 TATA
* *
32790 AATTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGG-CCA
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
32854 CTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAA
66 CTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAA
*
32919 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACTAATTCGCATGGACATG
131 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATG
*
32984 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCATTCAATATAAATT
196 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
*
33049 TAATCT-GGGATCGTTGACAGGGG-AGAGCTTGAGTTGTCTAGCTTTGCACCTT-AAC-ATCATC
261 TAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATC
* *
33110 ATGTT-TCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAG--CT-CTAGA
326 ATGTTCT-GAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGA
* * * ** * *
33171 TA-CTGGGAAAGACTGACCTTGAA-TTTGAG--GGCATCGAC-GAGGACCTTGTCGACATGAACA
390 TAGATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAACA
*
33231 TCTAACCCTAGAGGACTAGACACTC-AACTTATATCTCTAAATCCTTGGT-GGAAGG----TTTC
455 TCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTC
*
33290 T-----T-AATCATAACATATATAGGAGTGTGT--ACTCTAGATCTACTAATGTTGGAACTAGAA
520 TCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAA
33347 TAGAAAACAC-GTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTC-CTAGGC---ACAT
585 TAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTC-AGGCTTGA-AT
33407 GACATACTGGC-GGAGGCTAC-TTAGGCTCTAAATC-ACCATAGATATAGCAATTCCCCTACAGT
648 GACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGT
* * *
33469 GCTATTTGAAAAAAACTCCCACCTCTAAAAACGTAAAAGAAGTCAATCG-AGAGAATGAGTATTA
713 GCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTATTA
* * *
33533 TGTAGCATTAAATTATTGATATAGAAACATTTATGGTTAACTGTAGGTGAGAGAAAAAGTGTCGA
778 TGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGA
* *
33598 CAAAATGCATTTTGATGAGTGAAGATGAG-AA-AAT-TTTTAAACAATTGTCGAAGACCATAAAG
843 CAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAAG
33660 AG-GGAGAAGTGTACAAG-AAATAAGGCATTTT-AGA-TTTCCT-AATAAAAAAATA-GTGAACT
908 AGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAAT-AAAAAATAGGTGAACT
*
33719 TGT-
972 TATA
33722 -AATTTTTTTCTAGAAGTTATAT--AAA-A--GACATTATATATATTTTAAAAGATATAGGAACA
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
*
33781 CTTGACATGGTGTAGCCTGATAAAGTG-ATGAATTGATGGAAGAGTTGAATGGAAAG-AAAA-AA
66 CTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAA
* * *
33843 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTAGAATAAT-AA-CAATTAGCATGG--ATG
131 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATG
33904 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT-AATT
196 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
* * *
33968 TAAT-TGGGGATCGTTGACA-GGGCAAAGCTTGAATTGTCTAGCTTTGCACCTT--ACAATCATC
261 TAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATC
34029 ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCT-TAAATGGTAGATCT-ATAGAT
326 ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGAT
* *
34092 A-CTGGGAAAGTCTGGCCT-GAATTTTGAGTTGGCA-TGACGGAGGACCTTGTCGACAAGAACAT
391 AGATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAACAT
*
34154 CT-ACCCTAGA-G----GACACTCAAACTTATATCTCTAAATCCTC-GTAGGAATGTTT-TTTCT
456 CTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCT
*
34211 CGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAATAGAAT
521 CGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAAT
34276 AGAAAACACGGTAATGTACCTGAGATCACATCAGCTA--TCCCACTCCTCTCAGGCTTGAATGAC
586 AGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAATGAC
34339 ATACT-GC-GGAGGCTACTTTAGGCTCTAAA-CGACCATAGATATAGCAATTCCCCTAC-GTGCT
651 ATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGTGCT
* * *
34400 ATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGTGAAAGAGTATTATAT
716 ATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTATTATGT
34465 AGCATTAAATTATTGATATAG-AA--TTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAA
781 AGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAA
*
34527 AATGGA-TTTGAT--GTGAAGATGAG-AA-AATCTTTTAAACAATTGTCGAAAAACATAAAGAGT
846 AATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAAGAGT
* *
34587 GGAGAAGTG-ATAA-AAAATAAGACATTTTAAGAGTTTCCT-AATAAAAAATAGGTGAACTTAT-
911 GGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAATAGGTGAACTTATA
* *
34648 AAATTTTTTTCTAGAAGTTCTATAAAAAGACTGACATTATATATATTTT-AAA-ATATAGG-CCA
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
34710 CTTGACATGGTGTA-CCTGATAAAGTGTATGAATTGATGGAA-AGTTGAAGGG-AAGAAAAAGAA
66 CTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAA
*
34772 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACTAATTCGCATGGAC-T-
131 AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATG
*
34835 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCATTCAATATAAATT
196 TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
* *
34900 TAATCT-GGG--CGTTGACAGGGGCAGAG--TGAGTTGTCTAGCTTTGCACCTTCAAC-ATCATC
261 TAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATC
* ** **
34959 ATGTT-TGAAAGCCAATCCATGCCTAAGATCA-GTTG-A-TCTCTAAA--GTATCTCTTTTAGAT
326 ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGAT
* ** *
35018 CGACTGGGAAAGTCT-GCCTTGAA--TT---TTGGCATCGACGGAGGA-CTTGTCGAC-AGAACA
391 AGA-TGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAACA
35075 TCT-ACCCTAGAGGACTAGACACTC-AACTTATATCTCTAAACTCCT-GG-ATGGAAGGTTTCTT
455 TCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAA-TCCTCGGTA-GGAAGGTTTCTT
* * *
35136 TCTCGAACTAAGTCATAACATATATAGGA--GTGT-GACTTTAGATCTACTAATGTTGGAACTAG
518 TCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAG
* * ***
35198 AATATAAAACAC-GTAATGTACATGAGA-CACATCAGCTACGT-CCACTCCTC-CTAGGCACAAA
583 AATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTC-AGGCTTGAA
* * * * *
35259 TGACATACTAGC-GGAGGCTACTCTA-GCTCTAAACCAATTC-TAGA-AT-GC-ATT----T---
647 TGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGA-CCATAGATATAGCAATTCCCCTACA
* * * * *
35311 -TTCTATATGAAAAAAAACTCCTACCTCTAGAAACGTAAAAGAAGTCAATTTGAAGAGAATGAGT
711 GTGCTATTTG-AAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAA-TTGCAGAGAAAGAGT
35375 ATTA--T-GCATTAAATTATT-ATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTA
774 ATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTA
*
35436 TCGACAAAA-GGA---T--TGA-TGAAGATGA-AAGA-AAT-TTTTAAACTATTGTCGAAG-A-A
839 TCGACAAAATGGATTTTGATGAGTGAAGATGAGAA-ATAATCTTTTAAACAATTGTCGAAGAACA
35489 TAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTT-AGAG-TT--TGAAT-AAAAATA-GTG
903 TAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAATAGGTG
*
35548 AACTTGTA
968 AACTTATA
*
35556 AACTTTTTTTTCTAGAAGTTATAT--AAAGACT-ACATTATATATATTTTAAAA-A-ATAGG---
1 AA-ATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAAC
*
35613 ACTTG-CATGGTGTAACCTGATAAAGTGTATGAATTGATGG-A-AGTTGAAGGGAAAGAAAAAGA
65 ACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGA
* *
35675 AAAT-GTGTAAGAGAAACATAGTTTGGATTATTGATTGGAGTAATGAA-CATATTCGCA-GG--A
130 AAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCA-ATTCGCATGGACA
* * * *
35735 TGTGTCATGAGTTGGTAG-TAATTTTGATGTAGAAAATTCTTGAATAAGGTTCAATTAATAT-AA
194 TGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
* * ** *
35798 TTTAATATGGGGAT--TT-ACTGGGGCA-AGCTTGAG-T-TCTAGC-TTGCA-CTTGCA-AATCA
259 TTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCA
*
35854 TCATGTT-TCGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCT-AATGGTAGCTCTAATA
324 TCATGTTCT-GAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATA
* * ***
35917 GATCGAATGGGAAAGTCTGGCCTC-AATTTGGACAGGGCA-TGACGGAGGACCTTGTCGACAAGA
388 GATAG-ATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGA
35980 ACATCT-ACCCTAGAGGA-TA-ACACTCAAACTTAT-TCTCTAAATCCTC-GTAGGAAGG-TT-T
452 ACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCT
* *
36038 TT-TCGAACTAAATCATAACATATAT-GGAGTGTGTGGACTCTAGATCTACTAACGTTTGAAATA
517 TTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
* *
36101 GAATACAAAACACGGTAATGTACCTGATATCACATCAGCTA--TCCC-CT-C-CTCAGGC-TGAA
582 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAA
*
36160 TGACATACTGAC--GAGGCTAC-TTAGGCTCTAAATCCG-CCATAGATAATAG----T-CCCTAC
647 TGACATACTGGCGGGAGGCTACTTTAGGCTCTAAAT-CGACCATAGAT-ATAGCAATTCCCCTAC
*
36216 A-TGCTATTTGAAAAAAACTCCCACCTCTAGAAACGT--AA-AAG-CAA--G--GAG-AATAG--
710 AGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTA
*
36269 TTA--T-GCATT-AATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGT
775 TTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTAT
* *
36330 CGA-AAAA--AATTTTGATGACTGAAGATGAGAAATAATCTTTTAAACAATTGTC-AA-AACA-A
840 CGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATA
* *
36389 AAGAGTGGAGAAGTGAAC-AGAAAATAA-G--TTTTAAGAGTTTCCTGAAGAAAAAATAGGTGAA
905 AAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAATAGGTGAA
36450 CTTAT-
970 CTTATA
*
36455 AAA-TTTTTT-TAGAAGTTATAT-AAAAGACTGACATTATATATATATTTTAAA-ATATAGG-A-
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATAT-TTTAAAAGATATAGGAAC
36514 ACTTGACATGGTGTAGCCTGAT-AAGTGTATGAATTG-TGGAA-AGTTGAAGGG-AAGAAAAAGA
65 ACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGA
*
36575 AAATGGTGT-AGAGAAATAGAGTTT-GATTATTGATTGGAGTAATGAACGAATTCGCATGGACAT
130 AAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACAT
36638 GTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC-A-ATAAAT
195 GTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAAT
*
36701 TTAATATGGGG-TCGTTGACAGGGG-AGAG---GAG-TGTCTAGCTTTGCACCTTAAACAA--AT
260 TTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCAT
* *
36758 CATGTTCTGAAAGCCAATCCATTTCTAAGATCA-GTT-AACTCTCT-AATAGTAGATCTAATAGA
325 CATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGA
* *
36820 TAGTATGGGAAAGACTGGCCTC-AATTTT-A-TTGGCATCGAC---GGACCTTGTCGACAAGAAC
390 TAG-ATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAAC
36879 ATCT-A---T-GAGGAC-AGACACTCAAACTTATATCTCTAAATCCTC-G-AGGAAGGTTTCTTT
454 ATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTT
* * *
36936 CTC-AACT-AATCATAACATATATAGGAGTGTGTGGGCTTTAGATCTACTAACGTTTGAACTAGA
519 CTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGA
* * *
36999 ATAGAAAACACGGTAATGTACCT-A-AACACATCAGCTAC-TTCCACTCCTC-CTA-GCTCGAAT
584 ATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTC-AGGCTTGAAT
* ** * * *
37059 GACATACTGACATGAGGCTACTCTAGGCTCTAAACCGA-C--AGATATAG-AATTCCCATACTA-
648 GACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTAC-AG
*
37119 TGCTA-TTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAA-TC-ATT-C-GTAGAATGAGTAT
712 TGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAG-AGAAAGAGTAT
37179 TATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAG-AAAAGTATC
776 TATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATC
* * *
37243 GACAAAATGGA--TTGATGAGTGAAGATGATAAA-AACCTTTTAAACTATTGTCGAAG-A-ATAA
841 GACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAA
* * * *
37303 AGAGTGGAGAAGTGTACAAGAAAATAATGTATTTTAAGAGTTTCCTAAATAAAAAATAGTTGAAC
906 AGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAATAGGTGAAC
37368 -T-T-
971 TTATA
*
37370 AAA-TATTTT-TAGAAGTTATATAAAAAGA-TGACATTATATATATATTT-AAA-ATATAGG-A-
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATAT-TTTAAAAGATATAGGAAC
*
37428 ACTTGACATGGTGTAGCCTGATAGAGTGTATGAATTG-T-G--GAGTTGAAGGGAAAG--AAA-A
65 ACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGA
* * *
37486 AAATGGTGTATGAG--A-A-AGTTT-GATTGTTGATTGGAGTAATGAAACAATTCGCATGGAC-T
130 AAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACAT
* * *
37545 GTGTCATGAGTTGGTAGATAA-TTTGAATGTAGAAAATTCT--TGTTAGGTTCAAT-TATATTAA
195 GTGTCATGAGTTGGTAGATAATTTTG-ATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
* * *
37606 TTTAATATGGGGATTGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTT-AACAATCA
259 TTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCA
*
37670 TCATGTTCTGAAAG-CAATCCATGCCTAAGATCATGTTGAACTCTCTAAA---T-G-TC------
324 TCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAG
37723 -TAGATGGGAAAGTCTGGCCTC-AA-TTTGAG-TGGCA-TGACGGAGGACCTTGTCGACAAGAAC
389 ATAGATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAAC
*
37783 ATCT-A-CCT--ATGACT--A-A-TC-AACTTATATCTCT-AATCCTCGGTA-G-A-----CTTT
454 ATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTT
37831 CTCG-AC--AATCAT-AC--ATAT--GAG-GTGT-GACTCTAGATC-ACTAACG-TGGAA--AGA
519 CTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGA
* *
37882 ATACAAAACA--GTAATGTACCTGAGATCACATCAGCTA--TCCCACTCCTCTCAGGCATGAATG
584 ATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAATG
*
37943 ACATACTGGC-GGAGGCTAC-TTAGGCTCTAAA-CGACCATAGATATAGCAATT-CCCTACAGTA
649 ACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGTG
*
38004 CTATTTGAAAAAAACTCCCACCTCTAGAAAC-T-AAAGAAGTCAA-T-C--A-CAAGAGTATTAT
714 CTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTATTAT
* * *
38062 ATAGCATTAAATTATTGATATA-TAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGAA
779 GTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGAC
* *
38126 AAAATGGATTTTGATGACTGAAGATGAGAAATAATCTTTTAAACAATTGTCGATA-AACA-CAA-
844 AAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGA-AGAACATAAAG
* * *
38188 AGTGGAGAAGTGAACAAG-AAATAAGACA-TTTAAGA-TTTCCTGAAAAAAAAAATAGGTGAACT
908 AGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTG-AATAAAAAATAGGTGAACT
38250 TATA
972 TATA
*
38254 AATTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATACATTTTAAAAGATATAGGAA
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATAT--ATTTTAAAAGATATAGGAA
38319 CACTTGACATGGTGTAGCCTG-T-AAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAG
64 CACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAG
*
38382 AAAATGGTGTAAGAGAAATAGAGTTTGG---ATTGATTGGAGTAATGAACGAATTCGCATGGACA
129 AAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACA
*
38444 TGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAACATAAA
194 TGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
38509 TTTAATCTGGGGATCGTTGACAGGGGCAAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACCAAG
259 TTTAATCTGGGGATCGTTGACAGGGGC-AGAGCTTGAGTTGTCTAGCTTTGCACCTTAAA-CAAG
* *
38574 CATCATGTTCTGAAAGCCAATCCATTTCTAAGATCATGTTGAACTCTCTAAATTGTAGATCTAAT
322 CATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAAT
* *
38639 AGATAGTATGGGAAAGACTGGCCTCAAATTTTGAGTTGGCATTGACAGAGGACCTTGTCGACAAG
387 AGATAG-ATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAG
*
38704 -ACATCTAACTCTAGAGGACTAGAC-CTC-AACTTATATCTCTAAATCCTCGGTAGGAAGGTTTC
451 AACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTC
* * *
38766 TTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGGCTTTAGATCTACTAGCGTT-GAACT
516 TTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACT
* *
38830 AGAATAGAAAACAC-GT-ATGTACCT-ATATCACATCAGCTACGT-CC-CTCCTC-CTAGGCTCG
581 AGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTC-AGGCTTG
* * * * * * * *
38889 AATGACATACTGAC-TGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAA-TGCCCTAC
645 AATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTAC
* * * *
38952 TA-TGCTATATGAAAACAAAAATCCCACCTCTAGAAACGTAAACGAAGTC-ATTCGTAGA-AAAT
710 -AGTGCTATTTG-AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATT-GCAGAGAAA-
39014 GAGTATTATGTAGCATTAAATTATTG--ATAGAAA-GTTTATGGTTAATTGTAGGTGAGAGAAAA
770 GAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAA
* ** * *
39076 AGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGA
835 AGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGA
* * * * *
39141 ATATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATTTTAAGAGTTTCCTAAATAATAAATAG
900 ACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAATAG
* *
39206 TTGAACATAT-
965 GTGAACTTATA
* * * * * *
39216 AAATATTTTTATAGAAGTTCTATAAAAAGATTGACATTATATATATATTAAAAAATATAGG---A
1 AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
* *
39278 CTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGTTGGAA-ACGTT-AAGGGAAAG-AAAA-
66 CTTGACATGGTGTAGCCTGA-TAAAGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAG
* * * * *
39339 AAAATGGTGTATGAG-AATAGAGTTTGAATTGTTGATTGGAGTAATGAAACAATTCGCATGGACT
129 AAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACA
* * *
39403 TGTGTCATGAGTTGGTAGATAATTTTAATGTAGAAAATTCTCTAGTTAGGTTCAATCAATATTAA
194 TGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
* * * *
39468 TTTAATATGGGGTTCGTTGACAGGGGTAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCA
259 TTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCA
* * ** *
39533 TCATGTTCTG-AAGCAAATCCATGCCTAAGATCATGTTGAACTCTCT-AAT-GTATCTCTATTAG
324 TCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAG
* * * *
39595 ATAGATTGGGAAAGTCT-GCCT-GAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAA
389 ATAGA-TGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAA
39658 CATCTA
453 CATCTA
39664 TTGAGGACTA
Statistics
Matches: 14159, Mismatches: 1559, Indels: 2143
0.79 0.09 0.12
Matches are distributed among these distances:
879 28 0.00
880 59 0.00
881 47 0.00
882 54 0.00
883 100 0.01
884 38 0.00
885 10 0.00
886 26 0.00
887 22 0.00
888 7 0.00
889 8 0.00
890 20 0.00
891 8 0.00
892 32 0.00
893 63 0.00
894 60 0.00
895 51 0.00
896 92 0.01
897 96 0.01
898 94 0.01
899 110 0.01
900 150 0.01
901 236 0.02
902 183 0.01
903 197 0.01
904 156 0.01
905 73 0.01
906 105 0.01
907 126 0.01
908 73 0.01
909 26 0.00
910 24 0.00
911 30 0.00
912 118 0.01
913 126 0.01
914 69 0.00
915 69 0.00
916 94 0.01
917 71 0.01
918 17 0.00
919 100 0.01
920 115 0.01
921 13 0.00
922 64 0.00
923 59 0.00
924 168 0.01
925 97 0.01
926 174 0.01
927 102 0.01
928 177 0.01
929 238 0.02
930 45 0.00
931 113 0.01
932 30 0.00
933 11 0.00
934 12 0.00
935 6 0.00
936 3 0.00
937 17 0.00
938 26 0.00
939 45 0.00
940 17 0.00
941 12 0.00
942 115 0.01
943 93 0.01
944 36 0.00
945 28 0.00
946 24 0.00
947 18 0.00
948 67 0.00
949 69 0.00
950 67 0.00
951 75 0.01
952 76 0.01
953 19 0.00
954 51 0.00
955 7 0.00
956 56 0.00
957 56 0.00
958 47 0.00
959 220 0.02
960 53 0.00
961 50 0.00
962 122 0.01
963 101 0.01
964 723 0.05
965 629 0.04
966 101 0.01
967 411 0.03
968 150 0.01
969 26 0.00
970 18 0.00
971 69 0.00
972 131 0.01
973 75 0.01
974 257 0.02
975 365 0.03
976 1345 0.09
977 1335 0.09
978 581 0.04
979 286 0.02
980 341 0.02
981 167 0.01
982 12 0.00
983 6 0.00
984 9 0.00
985 3 0.00
986 2 0.00
988 2 0.00
989 5 0.00
991 6 0.00
993 9 0.00
994 3 0.00
995 14 0.00
996 20 0.00
997 20 0.00
998 19 0.00
999 13 0.00
1000 8 0.00
1001 8 0.00
1002 1 0.00
1004 1 0.00
1005 9 0.00
1006 7 0.00
1007 3 0.00
1008 3 0.00
1009 2 0.00
1010 5 0.00
1011 7 0.00
1012 1 0.00
1013 3 0.00
1015 11 0.00
1016 4 0.00
1017 8 0.00
1018 1 0.00
1019 1 0.00
1020 10 0.00
1021 11 0.00
1022 15 0.00
1023 17 0.00
1024 32 0.00
1025 28 0.00
1026 21 0.00
1027 40 0.00
1028 39 0.00
1029 38 0.00
1030 41 0.00
1031 21 0.00
1032 22 0.00
1033 38 0.00
1034 64 0.00
1035 55 0.00
1036 36 0.00
1037 23 0.00
1038 36 0.00
1039 43 0.00
1040 69 0.00
1041 72 0.01
1042 49 0.00
1043 70 0.00
1044 70 0.00
1045 65 0.00
1046 72 0.01
1047 76 0.01
1048 68 0.00
1049 73 0.01
1050 71 0.01
1051 69 0.00
1052 69 0.00
1053 58 0.00
1054 39 0.00
1055 49 0.00
1056 37 0.00
1057 45 0.00
1058 36 0.00
1059 32 0.00
1060 32 0.00
1061 18 0.00
1062 17 0.00
1063 20 0.00
1064 12 0.00
1065 11 0.00
1066 3 0.00
1067 6 0.00
1068 29 0.00
1069 8 0.00
1070 21 0.00
1071 33 0.00
1072 19 0.00
1073 33 0.00
1074 24 0.00
1075 10 0.00
1076 6 0.00
1077 4 0.00
1078 8 0.00
1079 9 0.00
1080 13 0.00
1081 24 0.00
1082 25 0.00
1083 14 0.00
1084 21 0.00
1085 29 0.00
1086 33 0.00
1087 45 0.00
1088 32 0.00
1089 35 0.00
1090 46 0.00
1091 22 0.00
1092 15 0.00
1093 17 0.00
1094 10 0.00
1095 27 0.00
1096 6 0.00
1097 10 0.00
1098 11 0.00
1099 2 0.00
1100 11 0.00
1101 13 0.00
1102 18 0.00
1103 22 0.00
1104 15 0.00
1105 19 0.00
1106 27 0.00
1107 26 0.00
1108 17 0.00
1109 32 0.00
1110 13 0.00
1111 16 0.00
1112 14 0.00
1113 10 0.00
1114 13 0.00
1115 23 0.00
1116 15 0.00
1117 31 0.00
1118 23 0.00
1119 23 0.00
1120 20 0.00
1121 13 0.00
1122 5 0.00
1124 3 0.00
1125 3 0.00
1126 1 0.00
1127 5 0.00
1129 5 0.00
1130 1 0.00
1131 2 0.00
1132 9 0.00
1133 5 0.00
1134 2 0.00
1135 3 0.00
1136 7 0.00
1137 6 0.00
1138 12 0.00
1139 15 0.00
1140 13 0.00
1141 27 0.00
1142 12 0.00
1143 17 0.00
1144 10 0.00
1147 2 0.00
1149 4 0.00
1150 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (975 bp):
AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATTTTAAAAGATATAGGAACA
CTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAA
AATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATG
TGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
TAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATC
ATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGAT
AGATGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAGAACAT
CTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCT
CGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAAT
AGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTCAGGCTTGAATGAC
ATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGTGCT
ATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGAGAAAGAGTATTATGT
AGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAA
AATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAAGAGT
GGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAATAGGTGAACTTATA
Found at i:41580 original size:966 final size:963
Alignment explanation
Indices: 39682--42112 Score: 3356
Period size: 966 Copynumber: 2.5 Consensus size: 963
39672 TAGACACTCG
*
39682 AATAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTTAGGCT
1 AATAGAATAG-AAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCT
* * * *
39747 TGAATGACATACTGGCGGGAGGCTACTCTAGGCTCTAAACCGACCATAGATATAG-AAT-TCCCT
65 TGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACCG-CCACAGATCTAGCAATGTCCCT
* * * * * * * * *
39810 ACTGTACTATTTGAAAAAAAACTCCCATCTCTAGAAAC-AAAAAGAAGTCA-ATCACAAAGAATG
129 ACTGTGCTATATGAAACAAAACT-CCACCTCTAGAAACGTAAAAGAAGACATTTGA-AGAGAATG
39873 AGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTAT-GTTAATTGTAGGTGAGAGAAAAA
192 AGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAA
* * * * * * * *
39937 GTATCAACATAATGGATTTTGATGTGTGAATATGAGAAATAATCTTTTAAACAATTGTCGAAG-A
257 GTGTCGACAAAATGGATGTTGATGAGTGAAGATGAG-AAGAACCTTTTAAACAATTGTCGAAGAA
* *
40001 CATAAAGAGTGGAGAAATGTACAAGAGAATAAGGTATTTTTAGAGTTTCTTAATAAAT--ATAGT
321 CAT-AAGAGTGGAGAAGTGTACAAGAGAATAAGGTA-TTTTAGAGTTTCTAAATAAATAAATAGT
*
40064 TGAACTTGTAAACTTTTTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATATTTTT
384 TGAACTTGT-AAC--TTTTTTATAGAAGATCTATATAAAGACTGACA-T-TATATATATATTTTA
*
40129 AAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTTAGAGTGTATGAATTGATGGAAGAGTTG
444 AAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTGATGGAAGAGTTG
*
40194 AAGGGAAGAAAAAAAATGGTGTAAGAGTAATAGAGTTTGGATTATTGATTGGAGTAATGAAACCA
509 AAGGGAAGAAAAAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACCA
*
40259 ATTCGCATGGACTGTGTCATGAGTTGGTAGATAATTTTGAATAGAAAATTCTCGAGTTAGGTTCA
574 ATTCGCATGGACTGAGTCATGAGTTGGTAGATAATTTTGAATAGAAAATTCTCGAGTTAGGTTCA
** *
40324 ATCAATATAAATTTAATCTGGGGATCATTGGCAGGGGAAGAGCTTGAGTTGTCTAGCTTTGCACC
639 ATCAATATAAATTTAATCTGGGGATCATTAACAGGGGAAGAGCTTGAGTTGTCTAGCTTTACACC
* * * *
40389 TTCACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCTGTTGATCTCTCTAAATGGTAG
704 TTAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCTGTTGAACTCTCTAAATGGTAG
* * *
40454 CTCTTTTAGATCAACTGGAAAGTTTGGCCTTGATTTTTGAAAGGGCATCGACAGAGGACCATGTC
769 CTCTGTTAGATCAACTGAAAAGTTTGGCCTTGATATTTGAAAGGGCATCGACAGAGGACCATGTC
* * *
40519 GACATGAACATCTAACCCTAGAGGACTAGACACTCGAACTTATATCTCTAAACCTTGGCTGGAAG
834 GACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAACCTCGGCTGGAAG
40584 GTTTCTTTCTCGAACTAAGTCATAACATATATAGGA-GTGTGGACTCTAGATCTACTAACGTTGG
899 GTTTCTTTCTCGAACTAAGTCATAACATATATAGGACGTGTGGACTCTAGATCTACTAA-GTTGG
40648 A
963 A
*
40649 AATAGAATAGAAACAC-GATAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCT
1 AATAGAATAGAAACACAG-TAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCT
** * * *
40713 CAAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACCAGTCACAGTTCTAGCAATGTCCTT
65 TGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACC-GCCACAGATCTAGCAATGTCCCT
*
40778 ATTGTGCTATATGAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAATGA
129 ACTGTGCTATATGAAACAAAACTCC-ACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAATGA
* * *
40843 GTATTATGCATCATTAAATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAG
193 GTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAG
* * *
40908 TGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAGAACCTTTTAAACAATTTTTGAAGAACA
258 TGTCGACAAAATGGATGTTGATGAGTGAAGATGAGAAGAACCTTTTAAACAATTGTCGAAGAACA
* *
40973 T-ATAGTGGAGAAGTGTACAAGAGAATAAGGTATTTTAGAGTTTCTGAATAAATAAATAGTTGAA
323 TAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTTAGAGTTTCTAAATAAATAAATAGTTGAA
41037 CTTGTAACTTTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATTTTAAAAAAATAT
388 CTTGTAACTTTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATTTTAAAAAAATAT
* **
41102 AGGAATTCTACACATGGTGTAGTCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAG
453 AGGAAGTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGG-AAG
*
41167 AAAAACAAAATGGTGTAAGAGAAATATAGTTTGGATTATTGATTGGAGTAATG-AA-CATATTCG
517 -AAAA-AAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACCA-ATTCG
* *
41230 CA-GATACTTGAGTCATGAGTTGGTATG-TAATTTTTGATGTAGAAAATTCTCGAGTTAGGTTCA
579 CATG-GAC-TGAGTCATGAGTTGGTA-GATAA-TTTTGA-ATAGAAAATTCTCGAGTTAGGTTCA
* * *
41293 ATCAATGTAAATTTAATCTGGGGGTCATTAAC-TGGGACAGAGCTTGAGTTGTCTAGCTTTACAC
639 ATCAATATAAATTTAATCTGGGGATCATTAACAGGGGA-AGAGCTTGAGTTGTCTAGCTTTACAC
41357 CTTAAACAAGCATCATGTTCCG-AAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGG
703 CTT-AACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATC-TGTTGAACTCTCTAAATGG
** * * **
41421 TAGCTCTGTTAGATTGACTTGAAAAGTCTT-G-CTTGA-ATTTGACA-GGTATCGATGGAGGACC
766 TAGCTCTGTTAGATCAAC-TGAAAAGT-TTGGCCTTGATATTTGAAAGGGCATCGACAGAGGACC
* * *
41482 TTGTCGACAAGAAC-TC-GACCCTAGAGGACTAGACACTCAAACTTATTTCTCTAAATCCTCGG-
829 ATGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAA-CCTCGGC
*
41544 TAGGAAGGTTTCTTTCTTGAACTAA-TCATAACATATATAGGACTGTGTGGACTCTAGATCTACT
893 T-GGAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAC-GTGTGGACTCTAGATCTACT
*
41608 AAGTTTGA
956 AAGTTGGA
* * * *
41616 ACTAGAATAGAAA-ACAGTAATGTACCTGATATAACATCAGCTACATCCCACTCCTCCTAGGCTT
1 AATAGAATAGAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTT
* * * * *
41680 GAATGACATACTAACATGAGGCTACTCTAGCCTCTAAATCGGCCACAGATCTAGCAATGCCCCTA
66 GAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAA-CCGCCACAGATCTAGCAATGTCCCTA
* * *
41745 CTATGCTATATGAAAACAAAACTCCACCTCTAGAAACGTAAAAGAAGACATTAGTAGAGAATGAG
130 CTGTGCTATATG-AAACAAAACTCCACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAATGAG
* *
41810 CATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAGAGT
194 TATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGT
* *
41875 GT-GAC-AAATAGATGTTGATGAGTAAAGATGAGAAGAACCTTTTAAACAATTGTCGAAGAACAT
259 GTCGACAAAATGGATGTTGATGAGTGAAGATGAGAAGAACCTTTTAAACAATTGTCGAAGAACAT
* * *
41938 AAAGAGTAGAGAAGTGTACAAAAAAATAAGGTATTTTA-AGTTTCTTAAAATAAATAAATAGTTG
324 -AAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTTAGAGTTTC-T-AAATAAATAAATAGTTG
* * * * * * *
42002 AACTTATAAATATTTTTATAGAAGTTCTATAAAAAGATTGTCATTATATATAT-TTTAAAAAAAA
386 AACTTGTAACT-TTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATTTTAAAAAAA
* * *
42066 TATAGGAAGACTTGACATTGTGTAGCCTGATTAGAGTGTATGAATTG
450 TATAGGAAGTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTG
42113 TTGAAAACGT
Statistics
Matches: 1305, Mismatches: 122, Indels: 74
0.87 0.08 0.05
Matches are distributed among these distances:
964 133 0.10
965 17 0.01
966 437 0.33
967 236 0.18
968 162 0.12
969 199 0.15
970 111 0.09
971 8 0.01
972 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (963 bp):
AATAGAATAGAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTT
GAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACCGCCACAGATCTAGCAATGTCCCTAC
TGTGCTATATGAAACAAAACTCCACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAATGAGTA
TTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGT
CGACAAAATGGATGTTGATGAGTGAAGATGAGAAGAACCTTTTAAACAATTGTCGAAGAACATAA
GAGTGGAGAAGTGTACAAGAGAATAAGGTATTTTAGAGTTTCTAAATAAATAAATAGTTGAACTT
GTAACTTTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATTTTAAAAAAATATAGG
AAGTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAGAAAA
AAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACCAATTCGCATGGAC
TGAGTCATGAGTTGGTAGATAATTTTGAATAGAAAATTCTCGAGTTAGGTTCAATCAATATAAAT
TTAATCTGGGGATCATTAACAGGGGAAGAGCTTGAGTTGTCTAGCTTTACACCTTAACAAGCATC
ATGTTCCGAAAGCCAATCCATGCCTAAGATCTGTTGAACTCTCTAAATGGTAGCTCTGTTAGATC
AACTGAAAAGTTTGGCCTTGATATTTGAAAGGGCATCGACAGAGGACCATGTCGACAAGAACATC
TAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAACCTCGGCTGGAAGGTTTCTTTCTCG
AACTAAGTCATAACATATATAGGACGTGTGGACTCTAGATCTACTAAGTTGGA
Done.