Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000076.1 Hibiscus syriacus cultivar Beakdansim tig00000140_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82161

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92--117
13
2.0
13
100
0
52
38
23
23
15
1.92
115--183
29
2.4
28
87
4
102
20
17
30
31
1.95
116--183
14
4.7
14
75
12
66
20
16
30
32
1.94
7874--7926
21
2.5
21
100
0
106
15
26
24
33
1.95
8118--8226
33
3.4
33
91
3
170
45
14
8
31
1.74
8215--8256
21
2.0
21
90
0
66
50
7
11
30
1.66
25626--25662
19
1.9
19
94
0
65
35
8
21
35
1.83
25639--25787
74
2.0
74
100
0
298
44
8
14
32
1.75
29841--30023
30
6.1
30
94
0
314
30
24
21
23
1.99
30012--30109
31
3.2
30
78
13
117
32
18
19
29
1.96
34109--34291
30
6.1
30
95
0
314
31
25
21
22
1.98
34280--34377
31
3.2
30
78
13
117
32
18
19
29
1.96
35275--35319
21
2.1
21
83
0
54
13
24
31
31
1.93
37050--37086
19
1.9
19
94
0
65
35
8
21
35
1.83
37063--37211
74
2.0
74
100
0
298
44
8
14
32
1.75
40589--40626
2
19.0
2
100
0
76
50
0
0
50
1.00
40978--41040
22
2.9
22
87
0
90
25
17
26
30
1.97
44421--44548
64
2.0
64
85
8
172
28
17
25
27
1.98
47240--47321
23
3.6
23
73
17
82
26
21
25
25
2.00
47218--47339
45
2.8
42
77
15
122
24
19
27
28
1.99
51152--51191
21
1.9
21
85
10
55
35
7
2
55
1.42
53796--54135
173
2.0
172
86
4
479
36
13
6
42
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67441--67487
19
2.5
19
89
6
69
27
17
31
23
1.96
67457--67548
20
4.4
20
82
14
107
29
16
26
28
1.97
71539--71732
48
4.1
48
82
2
223
12
17
20
49
1.79

Tables:   1

The End!