genome.fa.s7600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007600.1 Hibiscus syriacus cultivar Beakdansim tig00021985_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40135

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4287--4365	32	2.5	32	87	2	106	21	35	26	16	1.94
4420--4544	32	3.9	32	91	2	189	18	37	30	13	1.89
4597--4729	61	2.1	63	95	2	243	13	38	37	10	1.79
4484--4706	93	2.4	92	68	12	211	15	36	35	12	1.85
4768--4896	33	4.0	32	89	5	181	18	35	31	14	1.91
4768--4896	65	2.0	63	86	5	179	18	35	31	14	1.91
4359--5000	346	1.9	345	94	2	1128	17	34	35	12	1.88
4862--5051	93	2.0	93	87	4	276	17	35	35	11	1.86
13235--13315	33	2.5	33	87	2	110	20	34	28	16	1.94
13370--13502	32	4.2	32	91	1	196	17	36	31	14	1.89
13586--13683	31	3.1	31	66	13	92	13	39	37	9	1.76
13549--13683	63	2.1	63	98	0	261	13	39	37	10	1.79
13434--13660	95	2.4	94	70	10	235	15	37	35	12	1.85
13466--13755	158	1.8	158	89	4	460	15	35	36	12	1.85
13718--13851	32	4.2	32	91	0	196	17	36	30	14	1.91
13612--14000	95	4.1	95	73	17	374	16	34	36	12	1.87
13309--13969	349	1.9	348	95	0	1196	16	34	35	13	1.88
27753--27998	63	3.8	62	68	23	164	19	32	32	15	1.93
27886--28007	32	3.9	31	89	3	181	18	36	30	13	1.90
27886--28007	63	1.9	63	88	3	183	18	36	30	13	1.90
28054--28184	63	2.1	63	98	0	253	13	39	35	10	1.80
28223--28356	32	4.2	32	91	0	196	17	36	30	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28117--28505	95	4.1	95	72	17	365	16	33	36	12	1.87
36697--36781	32	2.8	29	79	11	98	21	34	29	15	1.94
36829--36941	32	3.6	32	91	3	176	19	35	30	15	1.92
36827--36960	32	4.2	32	87	5	175	17	35	33	14	1.89
36935--36977	22	2.0	22	90	0	68	13	34	41	9	1.77
37002--37131	60	2.1	61	94	4	228	13	36	38	10	1.80
37165--37297	65	2.1	63	88	2	194	18	36	30	15	1.91
37165--37297	32	4.2	32	91	1	196	18	36	30	15	1.91
37262--37443	92	2.0	93	90	3	287	17	33	37	12	1.86

Tables:   1

The End!