Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007602.1 Hibiscus syriacus cultivar Beakdansim tig00022053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50450
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.23
Found at i:3931 original size:31 final size:32
Alignment explanation
Indices: 3896--4026 Score: 169
Period size: 31 Copynumber: 4.2 Consensus size: 32
3886 GCCTGGGTTG
* *
3896 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
3927 CCGAGACACCCGTCTGGGTTTGCCGATGG-GA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
3958 CCGAGACACCC-TCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
3989 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
4022 CCGAG
1 CCGAG
4027 CCTCACGCAC
Statistics
Matches: 87, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
30 15 0.17
31 32 0.37
32 20 0.23
33 20 0.23
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:4113 original size:93 final size:93
Alignment explanation
Indices: 3750--4131 Score: 326
Period size: 93 Copynumber: 4.1 Consensus size: 93
3740 GCGAGGCTGC
* * ** *
3750 CGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCCCACCAATGGACTGGGGTTGCCGAGGCACCCG
1 CGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCG
* *
3815 TCGGGTGTTGCCGATGGTGACCGAGGCCCC
65 TCGGGGGTTGCCGATGGTGACCGA-GCCCA
* *
3845 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGT-GCCTGGGTTGCCGAGGCACCCGT
1 CGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGT
3909 C-GGGGTTGCCGATGGTGACCGAG---A
66 CGGGGGTTGCCGATGGTGACCGAGCCCA
* * ** * *
3933 --CA-CC--CGTCTGGGTTTGCCGATG-GG-AC-CGAGACACCCTCTGGCTTTGCCAATGG-TGA
1 CGCACCCAACG-CTCGG-TT-CTG-TGCGGCACTCCCG-CACCC-GTGGC-CTG-----GGTTG-
* * *
3989 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCA
53 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGCC-CA
4032 CGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGT
1 CGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGT
*
4096 CGGGGGTTGCCGATGGTGACCGAGGCCCC
66 CGGGGGTTGCCGATGGTGACCGA-GCCCA
4125 CGCACCC
1 CGCACCC
4132 GTGGCCTGGG
Statistics
Matches: 228, Mismatches: 29, Indels: 61
0.72 0.09 0.19
Matches are distributed among these distances:
83 1 0.00
84 6 0.03
85 10 0.04
86 7 0.03
87 4 0.02
88 2 0.01
91 1 0.00
92 22 0.10
93 60 0.26
94 23 0.10
95 58 0.25
99 5 0.02
100 8 0.04
101 13 0.06
102 6 0.03
103 2 0.01
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (93 bp):
CGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGT
CGGGGGTTGCCGATGGTGACCGAGCCCA
Found at i:4137 original size:62 final size:62
Alignment explanation
Indices: 4061--4193 Score: 241
Period size: 62 Copynumber: 2.1 Consensus size: 62
4051 GTGCGGCACT
*
4061 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGA-GCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
4123 CCCGCACCCGTGGCCTGGGGTTGCCGAGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
4185 CCCGCACCC
1 CCCGCACCC
4194 AACTCTCGGT
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 59 0.86
63 10 0.14
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:4299 original size:32 final size:32
Alignment explanation
Indices: 4258--4369 Score: 190
Period size: 32 Copynumber: 3.5 Consensus size: 32
4248 CCCGTCGGGG
4258 GCCGATGGTGACCGAGACACCCGTCTGGGTTT
1 GCCGATGGTGACCGAGACACCCGTCTGGGTTT
4290 GCCGATGGTGACCGAGACACCCGTCTGGGTTT
1 GCCGATGGTGACCGAGACACCCGTCTGGGTTT
* *
4322 GCCGATGGTGACCGAGGCCACCCGCCTGGG-TT
1 GCCGATGGTGACCGA-GACACCCGTCTGGGTTT
4354 GCCGATGGTGACCGAG
1 GCCGATGGTGACCGAG
4370 CCTCACGCAC
Statistics
Matches: 77, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
31 1 0.01
32 64 0.83
33 12 0.16
ACGTcount: A:0.15, C:0.29, G:0.37, T:0.19
Consensus pattern (32 bp):
GCCGATGGTGACCGAGACACCCGTCTGGGTTT
Found at i:4346 original size:157 final size:155
Alignment explanation
Indices: 3927--4346 Score: 471
Period size: 157 Copynumber: 2.7 Consensus size: 155
3917 CCGATGGTGA
* ** * *
3927 CCGAGACACCCGTCTGGGTTTGCCGATGG-GACCGAGACACCC-TCTGGCTTTGCCAATGGTGAC
1 CCGAGCCACCCGTC-GGGGGTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * *
3990 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
65 CGA-G-CACCCGTCTGGGATTGCCGATGGTGACCGAGGCC-CCCGCACCAACGCTCGGTTCTGTC
*
4054 CGGCACTCCCGCACCCGTGGCCTGGGTTG
127 CGGAACTCCCGCACCCGTGGCCTGGGTTG
* * * *** * *
4083 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGCCACCCGTCGGGGG-TGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * *
4145 G-CCGAGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGTCTCTG
62 GACCGAGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCCCCCGCA-CCAACGCTCGGT-TCTG
4209 TCCGGAACTCCCGCACCCGTGGCCTGGGTTG
125 TCCGGAACTCCCGCACCCGTGGCCTGGGTTG
4240 CCGAGCCACCCGTC-GGGG-GCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
1 CCGAGCCACCCGTCGGGGGTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
*
4303 GAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGC
66 GAG-CACCCGTCTGGGATTGCCGATGGTGACCGAGGCC-CCCGC
4347 CTGGGTTGCC
Statistics
Matches: 218, Mismatches: 31, Indels: 29
0.78 0.11 0.10
Matches are distributed among these distances:
154 25 0.11
155 47 0.22
156 71 0.33
157 73 0.33
158 2 0.01
ACGTcount: A:0.14, C:0.35, G:0.34, T:0.17
Consensus pattern (155 bp):
CCGAGCCACCCGTCGGGGGTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
GAGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCCCCCGCACCAACGCTCGGTTCTGTCCGGA
ACTCCCGCACCCGTGGCCTGGGTTG
Found at i:4356 original size:64 final size:65
Alignment explanation
Indices: 4258--4503 Score: 193
Period size: 64 Copynumber: 3.7 Consensus size: 65
4248 CCCGTCGGGG
* * *
4258 GCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTT
1 GCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGACACCCGTCTGGGTTT
4322 GCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAACG-
1 GCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAG----A--CACC--CGT
*
4385 CTCGG-TT
58 CTGGGTTT
* **** *** * *
4392 -CTG-TGCG-GCACTCCCTCACCAATGGCCTGGGGTTGCCGATGGTGACCGAGAC-CCCGTATGG
1 GCCGATG-GTG-A--CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGACACCCGTCTGG
*
4453 TTTT
62 GTTT
4457 GCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
1 GCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
4504 GGCTCACGCA
Statistics
Matches: 140, Mismatches: 23, Indels: 38
0.70 0.11 0.19
Matches are distributed among these distances:
63 2 0.01
64 63 0.45
65 16 0.11
66 5 0.04
67 3 0.02
68 5 0.04
69 4 0.03
70 6 0.04
71 16 0.11
72 20 0.14
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.20
Consensus pattern (65 bp):
GCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGACACCCGTCTGGGTTT
Found at i:4420 original size:343 final size:343
Alignment explanation
Indices: 3794--4430 Score: 1111
Period size: 343 Copynumber: 1.9 Consensus size: 343
3784 CACCAATGGA
* *
3794 CTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTC
1 CTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
* * *
3859 GGCTCTGTGCGGCACTCCCGCACCCGTGCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGG
66 GGCTCTGTCCGGAACTCCCGCACCCGTGCCTGGGTTGCCGAGCCACCCGTCGGGG-TGCCGATGG
3924 TGACCGAGACACCCGTCTGGGTTTGCCGATGGGACCGAGACACCCTCTGGCTTTGCCAATGGTGA
130 TGACCGAGACACCCGTCTGGGTTTGCCGATGGGACCGAGACACCCTCTGGCTTTGCCAATGGTGA
3989 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
195 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
**
4054 CGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCG
260 CGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCG
4118 AGGCCCCCGCACCCGTGGC
325 AGGCCCCCGCACCCGTGGC
4137 CTGGGGTTGCCGA-GCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
1 CTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
4201 GGTCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGG-GCCGATG
66 GG-CTCTGTCCGGAACTCCCGCACCCGT-GCCTGGGTTGCCGAGCCACCCGTCGGGGTGCCGATG
* *
4265 GTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
129 GTGACCGAGACACCCGTCTGGGTTTGCCGATGG-GACCGAGACACCC-TCTGGCTTTGCCAATGG
4330 TGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCT
192 TGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCT
*
4394 GTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
257 GTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
4431 TGGTGACCGA
Statistics
Matches: 279, Mismatches: 10, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
342 91 0.33
343 114 0.41
344 74 0.27
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (343 bp):
CTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
GGCTCTGTCCGGAACTCCCGCACCCGTGCCTGGGTTGCCGAGCCACCCGTCGGGGTGCCGATGGT
GACCGAGACACCCGTCTGGGTTTGCCGATGGGACCGAGACACCCTCTGGCTTTGCCAATGGTGAC
CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTGC
GGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGC
Found at i:4497 original size:33 final size:31
Alignment explanation
Indices: 4416--4503 Score: 104
Period size: 33 Copynumber: 2.8 Consensus size: 31
4406 CTCACCAATG
*
4416 GCCTGGGGTTGCCGATGGTGACCGAGACCCC
1 GCCTGGGATTGCCGATGGTGACCGAGACCCC
** ** *
4447 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GAC-CCC
4480 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
4504 GGCTCACGCA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
31 21 0.46
32 2 0.04
33 23 0.50
ACGTcount: A:0.14, C:0.28, G:0.38, T:0.20
Consensus pattern (31 bp):
GCCTGGGATTGCCGATGGTGACCGAGACCCC
Found at i:12757 original size:22 final size:21
Alignment explanation
Indices: 12732--12773 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
12722 CGGCACTCCC
*
12732 GCACCCGGCCTGGGTTGCCGAG
1 GCACCC-GCCGGGGTTGCCGAG
*
12754 GCACCCGTCGGGGTTGCCGA
1 GCACCCGCCGGGGTTGCCGA
12774 TGGTGACCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.10, C:0.36, G:0.40, T:0.14
Consensus pattern (21 bp):
GCACCCGCCGGGGTTGCCGAG
Found at i:12808 original size:32 final size:32
Alignment explanation
Indices: 12749--12881 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
12739 GCCTGGGTTG
* *
12749 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
12780 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
12812 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
12844 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
12877 CCGAG
1 CCGAG
12882 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:12869 original size:65 final size:63
Alignment explanation
Indices: 12749--12881 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
12739 GCCTGGGTTG
* * * * *
12749 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
12812 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
12877 CCGAG
1 CCGAG
12882 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:12972 original size:30 final size:30
Alignment explanation
Indices: 12938--13037 Score: 75
Period size: 29 Copynumber: 3.4 Consensus size: 30
12928 CCTGGGGTTG
12938 CCGAGGCACCCGTCGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGTTGCCGATGGTGA
* * ** * *
12968 CCGAGGCCCCCGCACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCG-TCGGGTTGCC-GATGG-TGA
12999 CC--GGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTC-GGGTTGCCGATGGTGA
13028 CCGAGG-ACCC
1 CCGAGGCACCC
13038 CGCACCCAAC
Statistics
Matches: 50, Mismatches: 12, Indels: 16
0.64 0.15 0.21
Matches are distributed among these distances:
28 4 0.08
29 16 0.32
30 15 0.30
31 12 0.24
32 3 0.06
ACGTcount: A:0.11, C:0.36, G:0.39, T:0.14
Consensus pattern (30 bp):
CCGAGGCACCCGTCGGGTTGCCGATGGTGA
Found at i:13039 original size:60 final size:60
Alignment explanation
Indices: 12915--13044 Score: 226
Period size: 60 Copynumber: 2.1 Consensus size: 60
12905 GTGCGGCACT
*
12915 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCC-AGGCACCCGTCGGGTTGCCGATGGTGACCGAGGAC
12976 CCCGCACCCGTGGCCTGGGGTTGCC-GGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCAGGCACCCGTC-GGGTTGCCGATGGTGACCGAGGAC
13036 CCCGCACCC
1 CCCGCACCC
13045 AACTCTCGGC
Statistics
Matches: 67, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
59 10 0.15
60 32 0.48
61 25 0.37
ACGTcount: A:0.10, C:0.38, G:0.38, T:0.14
Consensus pattern (60 bp):
CCCGCACCCGTGGCCTGGGGTTGCCAGGCACCCGTCGGGTTGCCGATGGTGACCGAGGAC
Found at i:13132 original size:32 final size:32
Alignment explanation
Indices: 13090--13221 Score: 203
Period size: 32 Copynumber: 4.2 Consensus size: 32
13080 GCCTGGGTTG
* *
13090 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
13122 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
13154 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
13186 CCGAGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
13217 CCGAG
1 CCGAG
13222 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
31 20 0.21
32 74 0.79
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:13316 original size:32 final size:32
Alignment explanation
Indices: 13275--13354 Score: 108
Period size: 32 Copynumber: 2.5 Consensus size: 32
13265 ATGGCCTGGG
* *
13275 TTGCCGATGGTGACCGA-GACACCCGTATGGTT
1 TTGCCGATGGTGACCGAGGACACCCGCATGG-A
* *
13307 TTGCCGATGGTGACCGAGGCCACCCGCCTGGA
1 TTGCCGATGGTGACCGAGGACACCCGCATGGA
13339 TTGCCGATGGTGACCG
1 TTGCCGATGGTGACCG
13355 GGCTCACGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
32 33 0.77
33 10 0.23
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGGACACCCGCATGGA
Found at i:21688 original size:95 final size:95
Alignment explanation
Indices: 21533--21920 Score: 374
Period size: 95 Copynumber: 4.1 Consensus size: 95
21523 TGCGAGGCTG
* ** *
21533 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
21598 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
21628 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
21693 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
21723 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
21785 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
21820 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
21883 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
21913 CCGCACCC
1 CCGCACCC
21921 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 61, Indels: 23
0.72 0.20 0.08
Matches are distributed among these distances:
93 32 0.14
94 13 0.06
95 114 0.52
96 32 0.14
97 30 0.14
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:21718 original size:32 final size:32
Alignment explanation
Indices: 21682--21815 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
21672 CCTGGGGTTG
* * *
21682 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
21714 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
21746 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
21778 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
21811 CCGAG
1 CCGAG
21816 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:21908 original size:32 final size:32
Alignment explanation
Indices: 21872--21975 Score: 101
Period size: 31 Copynumber: 3.3 Consensus size: 32
21862 GCCTGGGTTG
21872 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** *
21904 CCGAGGCCCCCG-CACCCGTGGCC--TGGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCCGAT-GG-TGA
21934 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
21966 CCGAGG-ACCC
1 CCGAGGCACCC
21976 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
29 1 0.02
30 13 0.24
31 20 0.37
32 19 0.35
33 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:21926 original size:62 final size:62
Alignment explanation
Indices: 21850--21982 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
21840 GTGCGGCACT
*
21850 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
21912 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
21974 CCCGCACCC
1 CCCGCACCC
21983 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:22071 original size:32 final size:32
Alignment explanation
Indices: 22029--22161 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
22019 CCTGGGGTTG
* *
22029 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
22061 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
22093 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
22125 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
22157 CCGAG
1 CCGAG
22162 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:22219 original size:347 final size:347
Alignment explanation
Indices: 21581--22222 Score: 1178
Period size: 347 Copynumber: 1.9 Consensus size: 347
21571 CAATGGACTG
* *
21581 GGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
* * *
21646 TCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGG
66 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGG
21711 TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGT
131 TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGT
21776 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
196 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
**
21841 TGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACC
261 TGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACC
21906 GAGGCCCCCGCACCCGTGGCCT
326 GAGGCCCCCGCACCCGTGGCCT
21928 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
21993 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGG
66 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGG
* *
22058 TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
131 TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGT
22123 GACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
196 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
*
22187 TGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
261 TGCGGCACTCCCGCACCAATGGCCT-GGGTTGCCGA
22223 TGGTGACCGA
Statistics
Matches: 284, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
346 65 0.23
347 219 0.77
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.18
Consensus pattern (347 bp):
GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGG
TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGT
GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
TGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACC
GAGGCCCCCGCACCCGTGGCCT
Found at i:22285 original size:33 final size:32
Alignment explanation
Indices: 22208--22296 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
22198 CTCACCAATG
*
22208 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
22240 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
22273 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
22297 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:30653 original size:93 final size:94
Alignment explanation
Indices: 30478--30862 Score: 347
Period size: 93 Copynumber: 4.1 Consensus size: 94
30468 TGCGAGGCTG
* * ** *
30478 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
30542 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
*
30572 CCGCACCCAACTCTC-GCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
30636 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * * * *** * * ***
30665 CCGTCTGGGTTTGC-C-GAT-GGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAG
1 CCG-CACCCAACGCTCGGCTCTGTG--CG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAG
* *
30725 GCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
60 G-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
* *
30762 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
30826 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
30855 CCGCACCC
1 CCGCACCC
30863 GTGGCCTGGG
Statistics
Matches: 222, Mismatches: 52, Indels: 34
0.72 0.17 0.11
Matches are distributed among these distances:
92 3 0.01
93 79 0.36
94 60 0.27
95 32 0.14
96 20 0.09
97 25 0.11
98 3 0.01
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:30684 original size:32 final size:32
Alignment explanation
Indices: 30625--30757 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
30615 CCTGGGGTTG
* *
30625 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
30656 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
30688 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
30720 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
30753 CCGAG
1 CCGAG
30758 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:30745 original size:65 final size:63
Alignment explanation
Indices: 30625--30757 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
30615 CCTGGGGTTG
* * * * *
30625 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
30688 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
30753 CCGAG
1 CCGAG
30758 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:30850 original size:31 final size:32
Alignment explanation
Indices: 30815--30918 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
30805 CCTGGGGTTG
30815 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
30846 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
30877 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
30909 CCGAGG-ACCC
1 CCGAGGCACCC
30919 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:30868 original size:62 final size:63
Alignment explanation
Indices: 30792--30925 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
30782 GTGCGGCACT
*
30792 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
30854 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
30917 CCCGCACCC
1 CCCGCACCC
30926 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:30881 original size:157 final size:158
Alignment explanation
Indices: 30720--31008 Score: 451
Period size: 157 Copynumber: 1.8 Consensus size: 158
30710 CCAATGGTGA
* *
30720 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGTTCT
1 CCGAGG-CACCCGCCGGGGATTGCCGATGGTGACCGAGGACC-C-CGCACCCAACGCTCGGCTCT
* * *
30782 GTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
30846 CCGAGGCCCCCGCACCCGTGGCCTGGGGTTG
128 CCGAGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
30877 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGCTCTGTC
1 CCGAGGCACCCGCCGGGGATTGCCGATGGTGACCGAGGACCCCGCACCCAACGCTCGGCTCTGTC
30942 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
31007 AG
131 AG
31009 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
156 31 0.26
157 65 0.54
158 24 0.20
ACGTcount: A:0.12, C:0.37, G:0.36, T:0.16
Consensus pattern (158 bp):
CCGAGGCACCCGCCGGGGATTGCCGATGGTGACCGAGGACCCCGCACCCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:31014 original size:32 final size:32
Alignment explanation
Indices: 30972--31104 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
30962 CCTGGGGTTG
* *
30972 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
31004 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
31036 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
31068 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
31100 CCGAG
1 CCGAG
31105 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:31227 original size:33 final size:32
Alignment explanation
Indices: 31150--31238 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
31140 CTCACCAATG
*
31150 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
31182 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
31215 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
31239 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:39576 original size:95 final size:94
Alignment explanation
Indices: 39421--39807 Score: 379
Period size: 95 Copynumber: 4.1 Consensus size: 94
39411 TGCGAGGCTG
* ** *
39421 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
39486 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
39516 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
39581 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
39610 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
39672 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
39707 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
39771 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
39800 CCGCACCC
1 CCGCACCC
39808 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 59, Indels: 25
0.72 0.19 0.08
Matches are distributed among these distances:
93 25 0.11
94 50 0.23
95 99 0.45
96 24 0.11
97 23 0.10
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:39629 original size:32 final size:32
Alignment explanation
Indices: 39570--39702 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
39560 CCTGGGGTTG
* *
39570 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
39601 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
39633 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
39665 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
39698 CCGAG
1 CCGAG
39703 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:39690 original size:65 final size:63
Alignment explanation
Indices: 39570--39702 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
39560 CCTGGGGTTG
* * * * *
39570 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
39633 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
39698 CCGAG
1 CCGAG
39703 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:39795 original size:31 final size:32
Alignment explanation
Indices: 39760--39863 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
39750 CCTGGGGTTG
39760 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
39791 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
39822 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
39854 CCGAGG-ACCC
1 CCGAGGCACCC
39864 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:39813 original size:62 final size:63
Alignment explanation
Indices: 39737--39870 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
39727 GTGCGGCACT
*
39737 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
39799 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
39862 CCCGCACCC
1 CCCGCACCC
39871 AACTCTCGCT
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:39975 original size:32 final size:32
Alignment explanation
Indices: 39916--40047 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
39906 CCTGGGGTTG
* *
39916 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
39947 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
39979 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
40011 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
40043 CCGAG
1 CCGAG
40048 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:39998 original size:156 final size:158
Alignment explanation
Indices: 39601--40018 Score: 519
Period size: 156 Copynumber: 2.7 Consensus size: 158
39591 CCGATGGTGA
* * *
39601 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
39666 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
65 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
39730 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
129 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
39760 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTTG
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-TG
* * * *
39822 -CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTC-GCTCT
63 ACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTCT
39883 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
39916 CCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
*
39981 GAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
40019 ACCCGCCTGG
Statistics
Matches: 219, Mismatches: 30, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
156 113 0.52
157 63 0.29
158 30 0.14
159 13 0.06
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (158 bp):
CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCCG
GAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:40170 original size:33 final size:31
Alignment explanation
Indices: 40094--40181 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
40084 CTCACCAATG
40094 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
40125 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
40158 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
40182 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:42627 original size:16 final size:17
Alignment explanation
Indices: 42606--42643 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
42596 TTTTCGGGCT
42606 AGTTGATTC-GCAGGTG
1 AGTTGATTCGGCAGGTG
42622 AGTTGATTCGGCAGGTG
1 AGTTGATTCGGCAGGTG
42639 AGTTG
1 AGTTG
42644 TTACACACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.18, C:0.11, G:0.39, T:0.32
Consensus pattern (17 bp):
AGTTGATTCGGCAGGTG
Found at i:48542 original size:31 final size:32
Alignment explanation
Indices: 48507--48638 Score: 178
Period size: 31 Copynumber: 4.2 Consensus size: 32
48497 GCCTGGGTTG
* *
48507 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
48538 CCGAGACACCCGTCT-GGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
48569 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
48601 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
48634 CCGAG
1 CCGAG
48639 CCTCACGCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
31 43 0.48
32 19 0.21
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:48731 original size:31 final size:32
Alignment explanation
Indices: 48696--48798 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
48686 CCTGGGGTTG
48696 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** *
48727 CCGAGGCCCCCG-CACCCGTGGCC--TGGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCCGAT-GG-TGA
*
48757 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
48789 CCGAGG-ACCC
1 CCGAGGCACCC
48799 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
29 1 0.02
30 14 0.26
31 30 0.56
32 8 0.15
33 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:48769 original size:61 final size:63
Alignment explanation
Indices: 48673--48805 Score: 243
Period size: 62 Copynumber: 2.1 Consensus size: 63
48663 GTGCGGCACT
*
48673 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
48735 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
48797 CCCGCACCC
1 CCCGCACCC
48806 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
61 20 0.29
62 49 0.71
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:48788 original size:188 final size:188
Alignment explanation
Indices: 48432--48794 Score: 511
Period size: 188 Copynumber: 1.9 Consensus size: 188
48422 CCGTCGGGTG
* *
48432 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
* ** *
48497 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGTTTGCCG
66 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGACCCGTTGGCCG
* *
48562 ATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 A-GGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
48621 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
48684 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCGCACCCG-TGG
65 GGCCT-GGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCG-ACCCGTTGG
* * *
48748 CCTG-GGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
128 CC-GAGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGG
48795 ACCCCGCACC
Statistics
Matches: 155, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
188 77 0.50
189 75 0.48
190 3 0.02
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (188 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGACCCGTTGGCCG
AGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:48834 original size:156 final size:156
Alignment explanation
Indices: 48601--48887 Score: 454
Period size: 156 Copynumber: 1.8 Consensus size: 156
48591 CCAATGGTGA
* * *
48601 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
48666 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGA
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
48731 GGCCCCCGCACCCGTGGCCTGGGTTG
131 GGCCCCCGCACCCGTGGCCTGGGTTG
* * *
48757 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
48819 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
48884 CGAG
128 CGAG
48888 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
155 31 0.26
156 87 0.73
157 2 0.02
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (156 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGCCTGGGTTG
Found at i:48911 original size:32 final size:32
Alignment explanation
Indices: 48852--48983 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
48842 CCTGGGGTTG
* *
48852 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
48883 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
48915 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
48947 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
48979 CCGAG
1 CCGAG
48984 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:49018 original size:344 final size:344
Alignment explanation
Indices: 48407--49043 Score: 1152
Period size: 344 Copynumber: 1.9 Consensus size: 344
48397 CAATGGACTG
* *
48407 GGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
* * *
48472 TCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTG
66 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTG
48537 ACCGAGACACCCGTCTGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
131 ACCGAGACACCCGTCTGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
48602 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTGC
196 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTGC
**
48667 GGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAG
261 GGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAG
48732 GCCCCCGCACCCGTGGCCT
326 GCCCCCGCACCCGTGGCCT
48751 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
48816 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
66 TCTGTCCGGAACTCCCGCACCCGTGGCCT-GGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
* *
48881 GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
130 GACCGAGACACCCGTCT-GGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
48946 ACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAACGCTC-GTTCTGT
194 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGT
*
49009 GCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
259 GCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
49044 TGGTGACCGA
Statistics
Matches: 281, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
344 129 0.46
345 87 0.31
346 65 0.23
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (344 bp):
GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTG
ACCGAGACACCCGTCTGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTGC
GGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAG
GCCCCCGCACCCGTGGCCT
Found at i:49106 original size:33 final size:32
Alignment explanation
Indices: 49029--49117 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
49019 CTCACCAATG
*
49029 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
49061 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
49094 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
49118 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Done.