genome.fa.s7605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007605.1 Hibiscus syriacus cultivar Beakdansim tig00022330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94394

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1420--1751	138	2.4	138	80	4	348	43	15	13	28	1.83
2538--2637	29	3.5	29	90	1	148	37	6	22	35	1.78
6308--8857	707	3.6	711	91	1	4086	33	14	21	30	1.93
11528--11600	36	2.0	36	97	0	137	42	8	20	28	1.81
13381--13450	12	5.8	12	75	6	61	15	12	18	52	1.74
13382--13454	24	3.0	24	81	0	101	17	10	17	53	1.72
13344--13454	48	2.3	48	84	6	136	20	13	16	49	1.79
13387--13438	17	2.8	19	70	21	56	15	13	19	51	1.75
13610--13664	2	27.5	2	100	0	110	49	0	0	50	1.00
14906--15293	138	2.8	139	76	6	351	42	13	13	30	1.82
16059--16115	17	3.1	17	77	22	69	21	49	22	7	1.73
16057--16111	22	2.5	22	96	0	101	21	50	21	5	1.68
16111--16241	58	2.3	58	89	2	210	36	6	22	34	1.79
16112--16220	29	3.8	29	97	0	200	33	6	22	36	1.80
17121--17244	63	2.0	63	82	6	153	17	28	28	25	1.98
17104--17205	31	3.3	31	76	4	89	17	30	27	24	1.97
17261--17314	26	2.1	26	89	0	81	27	7	16	48	1.73
26550--27542	496	2.0	496	98	0	1941	38	8	13	38	1.76
28299--28452	43	3.6	42	84	6	195	21	19	14	44	1.86
31424--31982	139	4.0	137	80	6	529	43	13	13	29	1.82
33541--33649	20	5.4	20	74	4	103	37	18	19	24	1.94
33601--33657	20	2.8	20	82	10	71	36	17	19	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34503--34562	24	2.5	24	83	0	84	25	18	18	38	1.93
36993--37079	20	4.3	20	88	2	122	35	22	21	19	1.96
37086--37146	19	3.2	19	95	0	104	45	14	21	18	1.84
37306--37343	14	2.6	15	87	4	60	47	21	0	31	1.51
39274--39427	34	4.4	34	73	11	139	42	21	20	15	1.88
39342--39410	20	3.5	20	87	0	93	37	23	20	18	1.94
39435--39540	40	2.9	34	79	15	122	19	21	19	38	1.93
39453--39598	20	7.6	20	84	9	187	19	19	21	39	1.93
39417--39595	74	2.4	74	88	0	252	18	20	20	40	1.92
41478--41545	20	3.5	20	83	2	84	39	25	19	16	1.91
41978--42012	15	2.3	15	100	0	70	34	25	17	22	1.96
41993--44450	707	3.5	709	91	2	3865	33	14	21	31	1.93
46237--46289	21	2.5	21	96	0	97	18	15	22	43	1.87
46985--47057	36	2.0	36	97	0	137	41	8	20	30	1.81
48802--48860	24	2.5	24	81	10	84	20	16	15	47	1.83
48820--48896	36	2.1	36	86	9	104	15	15	16	51	1.76
48844--48896	12	4.4	12	87	0	79	11	15	16	56	1.67
50404--50892	139	3.5	138	81	5	479	43	15	12	28	1.82
60531--60685	29	5.3	29	87	6	199	34	20	7	36	1.82
66777--66835	31	1.9	31	86	6	84	28	28	25	16	1.97
67722--67882	29	5.6	29	82	4	182	36	21	3	37	1.72
67722--67882	57	2.8	58	83	3	191	36	21	3	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67884--67927	17	2.6	17	88	0	70	13	22	45	18	1.84
68798--69287	139	3.5	135	76	7	407	43	13	13	30	1.81
69022--69363	139	2.5	139	81	7	358	45	13	12	29	1.79
71487--71527	20	2.0	20	100	0	82	39	17	14	29	1.89
72987--73377	138	2.8	136	76	5	376	42	14	13	29	1.84
74169--74268	29	3.5	29	90	1	148	37	6	22	35	1.78
77949--80511	711	3.6	711	92	1	4210	33	14	21	30	1.93
83181--83253	36	2.0	36	97	0	137	42	8	20	28	1.81
85009--85078	12	5.8	12	75	6	61	15	12	18	52	1.74
85010--85082	24	3.0	24	81	0	101	17	10	17	53	1.72
84972--85082	48	2.3	48	84	6	136	20	13	16	49	1.79
85015--85066	17	2.8	19	70	21	56	15	13	19	51	1.75
85238--85288	2	25.5	2	100	0	102	49	0	0	50	1.00
86527--86913	138	2.8	138	76	6	347	42	13	13	30	1.82
87674--87728	22	2.5	22	93	0	92	23	50	20	5	1.68
87729--87835	29	3.8	29	93	3	182	34	6	22	36	1.80
88727--88849	63	2.0	62	82	7	151	17	28	28	25	1.98
88866--88919	26	2.1	26	89	0	81	27	7	16	48	1.73

Tables:   1

The End!