genome.fa.s7606.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007606.1 Hibiscus syriacus cultivar Beakdansim tig00022350_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42291

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2565--2745	90	2.0	94	86	5	262	11	37	34	16	1.85
2715--2841	32	4.0	32	84	6	159	15	31	33	18	1.93
2900--3002	31	3.4	31	67	11	95	11	34	38	14	1.83
2877--3009	62	2.1	62	97	0	248	10	37	37	14	1.80
2741--3157	156	2.6	156	79	9	481	13	35	33	18	1.89
3056--3185	31	4.2	31	85	7	165	13	33	33	19	1.91
3241--3319	32	2.5	31	85	6	97	16	29	32	21	1.95
11416--11802	95	4.1	94	72	8	379	12	36	33	17	1.88
11565--11697	32	4.2	32	88	2	187	15	30	35	18	1.92
11565--11697	65	2.1	63	87	2	185	15	30	35	18	1.92
11755--11857	31	3.4	31	68	16	97	11	34	39	13	1.81
11732--11864	62	2.1	62	98	0	257	10	37	38	13	1.79
11660--11946	156	1.8	157	89	5	456	12	36	35	15	1.85
11911--12042	32	4.2	32	92	3	205	14	31	36	18	1.90
12089--12177	33	2.8	32	82	1	115	14	28	37	20	1.92
20457--20589	32	4.2	32	88	2	187	15	30	35	18	1.92
20457--20589	65	2.1	63	87	2	185	15	30	35	18	1.92
20647--20748	31	3.4	31	68	18	97	11	35	39	13	1.82
20624--20755	61	2.1	62	97	1	248	10	37	37	13	1.80
20552--20836	155	1.8	155	88	5	443	12	37	34	15	1.85
20802--20932	32	4.2	31	92	4	201	14	31	35	18	1.91
20979--21068	32	2.8	32	81	3	108	14	28	36	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20981--21085	34	3.1	34	79	6	99	15	29	36	19	1.92
29380--29512	32	4.2	32	88	2	187	15	30	35	18	1.92
29380--29512	65	2.1	63	87	2	185	15	30	35	18	1.92
29276--29617	94	3.6	93	70	21	303	12	35	34	17	1.87
29570--29673	31	3.3	32	68	16	101	11	34	40	13	1.81
29547--29680	62	2.1	63	97	1	252	10	37	38	13	1.79
29475--29763	157	1.8	157	89	4	458	12	36	35	15	1.85
29727--29859	32	4.2	32	91	2	196	14	30	36	18	1.90
29727--29993	64	4.0	65	71	16	217	14	32	33	19	1.92
29906--29993	33	2.7	31	81	6	113	14	28	36	20	1.92
38280--38413	32	4.2	32	88	1	187	15	30	35	17	1.92
38471--38568	32	3.1	32	66	14	94	10	33	41	14	1.79
38448--38581	63	2.1	62	97	1	250	9	37	39	13	1.78
38448--38545	31	3.1	31	66	13	92	9	37	39	13	1.76
38206--38568	190	1.9	190	84	6	495	12	34	35	17	1.87
38628--38758	32	4.2	32	90	4	187	14	31	36	17	1.90
38805--38893	33	2.8	32	82	1	115	14	28	37	20	1.92

Tables:   1

The End!