genome.fa.s7607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007607.1 Hibiscus syriacus cultivar Beakdansim tig00022354_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39214

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4522--4610	33	2.8	32	82	1	115	20	37	28	14	1.92
4656--4783	30	4.2	31	88	6	172	17	37	29	14	1.90
4829--4955	58	2.1	60	94	4	222	13	41	33	11	1.79
4748--5027	149	1.9	146	87	6	384	15	36	35	12	1.86
4990--5123	32	4.2	32	89	0	187	17	35	30	15	1.92
4886--5248	89	3.9	89	71	13	313	17	34	35	12	1.87
18872--18956	32	2.8	29	79	11	98	21	36	27	15	1.93
19004--19117	32	3.6	32	95	2	194	20	35	28	14	1.92
19340--19473	32	4.2	32	89	0	187	17	35	30	15	1.92
27751--27836	30	2.7	31	76	7	102	20	34	29	15	1.93
27883--28015	32	4.2	32	93	1	205	18	36	30	14	1.90
28060--28193	63	2.1	62	93	5	234	13	38	37	11	1.80
28067--28171	32	3.3	32	65	17	85	13	40	34	12	1.82
28228--28360	33	4.2	32	88	4	189	19	34	30	15	1.92
28228--28360	65	2.1	63	87	5	187	19	34	30	15	1.92
27823--28461	345	1.9	343	93	3	1104	17	33	35	12	1.89
28326--28503	91	2.0	90	88	6	270	16	34	37	12	1.86
36617--36704	31	2.8	32	78	5	106	20	36	28	14	1.92
36751--36884	32	4.2	32	91	3	198	17	37	30	14	1.90
36749--36884	65	2.1	64	87	4	202	17	36	31	13	1.89
36968--37061	30	3.1	30	66	21	79	12	38	39	9	1.76
36931--37061	62	2.2	60	95	2	235	12	38	38	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37096--37226	31	4.2	31	87	4	165	18	34	31	16	1.93
36993--37356	94	3.9	92	70	13	280	17	32	36	13	1.88
36690--37326	345	1.9	346	94	2	1133	17	34	35	13	1.88

Tables:   1

The End!