genome.fa.s7608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007608.1 Hibiscus syriacus cultivar Beakdansim tig00022381_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45351

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3526--3613	32	2.8	32	80	3	106	20	37	27	14	1.92
3660--3792	32	4.2	32	93	1	205	18	36	30	14	1.90
3844--3948	32	3.4	32	68	16	103	13	41	33	11	1.80
3875--3971	30	3.1	31	66	16	92	13	40	37	9	1.77
3839--3971	62	2.1	62	98	0	257	13	39	36	10	1.79
3724--3948	94	2.4	94	72	10	251	16	37	34	12	1.86
3756--4043	156	1.8	157	89	3	456	15	36	36	12	1.85
4006--4139	32	4.2	32	89	0	187	17	35	30	15	1.92
3599--4255	347	1.9	346	95	0	1190	17	34	34	13	1.89
12473--12560	31	2.8	31	80	3	104	20	37	27	14	1.92
12473--12719	64	3.8	63	67	22	168	20	33	30	15	1.93
12610--12737	32	4.0	32	91	3	188	18	36	30	14	1.90
12788--12892	32	3.4	32	68	16	103	13	41	33	11	1.80
12819--12914	30	3.1	30	66	16	88	13	40	36	9	1.77
12784--12914	62	2.1	62	97	1	246	13	40	35	10	1.80
12670--12892	93	2.4	92	71	10	236	16	37	33	12	1.86
12820--12920	32	3.2	31	65	21	84	13	39	36	9	1.79
12702--12986	155	1.8	155	88	4	441	15	36	35	12	1.85
12949--13082	32	4.2	32	89	0	187	17	35	30	15	1.92
12845--13231	95	4.1	95	72	9	358	17	34	35	12	1.88
21402--21488	32	2.7	32	81	1	111	20	36	27	14	1.92
21402--21480	33	2.4	33	87	2	106	21	34	27	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21534--21664	30	4.2	31	87	8	178	18	37	30	13	1.90
21535--21664	31	4.2	32	89	5	178	18	37	30	13	1.90
21711--21843	62	2.1	63	97	2	252	13	39	36	10	1.79
21564--21978	157	2.7	156	80	6	509	17	35	33	13	1.89
21878--22010	32	4.2	32	87	2	178	18	36	30	15	1.92
21774--22156	92	4.1	94	70	20	316	17	34	35	12	1.88
30327--30415	33	2.8	32	82	1	115	20	37	28	14	1.92
30462--30592	31	4.2	32	91	3	187	18	37	29	14	1.90
30460--30592	63	2.1	63	86	5	189	18	36	30	14	1.90
30639--30770	63	2.1	62	95	2	239	12	40	36	10	1.78
30805--30938	32	4.2	32	89	0	187	17	35	30	15	1.92
30699--31085	93	4.1	94	72	18	352	17	34	35	12	1.88
39212--39297	32	2.7	31	82	5	109	20	37	26	15	1.92
39346--39473	31	4.2	31	88	6	172	18	38	28	14	1.91
39556--39653	31	3.1	31	66	13	92	13	39	37	9	1.76
39520--39653	63	2.1	62	97	1	250	13	39	36	10	1.79
39407--39629	94	2.4	92	69	12	211	16	37	33	12	1.86
39438--39725	157	1.8	156	88	5	438	15	36	36	12	1.85
39688--39820	32	4.2	32	88	1	178	18	36	30	15	1.92
39785--39977	95	2.0	94	89	1	296	16	35	35	11	1.86

Tables:   1

The End!