genome.fa.s7609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007609.1 Hibiscus syriacus cultivar Beakdansim tig00022473_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35736

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2254--2330	31	2.5	30	82	4	82	20	36	24	18	1.95
2120--2681	164	3.4	166	91	5	903	17	34	31	16	1.92
2579--2762	33	5.5	33	77	11	178	16	36	30	16	1.91
2571--2785	105	2.1	101	93	4	367	16	35	31	16	1.91
3148--3179	11	2.9	11	95	0	55	9	40	37	12	1.75
11090--11170	31	2.6	31	84	5	101	20	35	25	17	1.95
10957--11520	163	3.4	167	90	6	879	17	34	31	17	1.93
11254--11334	31	2.6	30	86	3	99	18	37	27	17	1.93
11417--11597	33	5.5	33	73	17	144	16	37	30	16	1.91
11409--11618	101	2.1	103	93	3	363	16	36	31	16	1.91
19563--19649	33	2.7	32	78	3	102	21	32	27	18	1.97
19428--20009	169	3.4	170	93	0	961	17	32	32	17	1.93
19734--19818	33	2.6	33	84	1	109	17	34	30	17	1.94
19903--20125	32	6.6	33	74	13	177	16	35	30	17	1.92
19905--20125	65	3.3	64	71	16	212	16	35	30	17	1.92
19903--20125	33	6.6	33	74	14	161	16	35	30	17	1.92
19860--20147	138	2.1	138	96	0	531	15	34	31	18	1.92
19428--20125	339	2.1	339	86	5	977	17	33	31	17	1.93
20515--20546	11	2.9	11	100	0	64	9	43	37	9	1.69
20912--21006	48	2.0	48	100	0	190	25	16	25	32	1.96
20977--21035	30	2.0	30	100	0	118	23	20	18	37	1.94
35215--35346	33	4.1	31	79	10	122	15	36	32	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34953--35526	166	3.4	168	89	4	885	17	33	32	17	1.93
35420--35504	33	2.6	33	92	1	136	18	36	29	15	1.92

Tables:   1

The End!