Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000761.1 Hibiscus syriacus cultivar Beakdansim tig00001478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5609167
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 19 of 23
Found at i:4623102 original size:64 final size:65
Alignment explanation
Indices: 4623034--4623177 Score: 161
Period size: 64 Copynumber: 2.2 Consensus size: 65
4623024 TTGGACCCTT
* * *
4623034 AGTGCATCGGTGCACT-AAGAGTGCATCGATGCATGAAGTGCATTCGATG-TTTCA-A-AATAGC
1 AGTGCATCGATGCA-TGAAGAGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAGAA-A-C
4623095 CTG
63 CTG
**** *
4623098 AGTGCATCGATGCATGTCTTGTGCATCGATGCATCAAATGCATTTGATGTTTTCATAGAAACCTG
1 AGTGCATCGATGCATGAAGAGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAGAAACCTG
4623163 AGTGCATCGATGCAT
1 AGTGCATCGATGCAT
4623178 ACAATGCATT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
63 1 0.01
64 39 0.57
65 24 0.35
66 2 0.03
67 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (65 bp):
AGTGCATCGATGCATGAAGAGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAGAAACCTG
Found at i:4623191 original size:64 final size:64
Alignment explanation
Indices: 4623055--4623192 Score: 158
Period size: 64 Copynumber: 2.2 Consensus size: 64
4623045 GCACTAAGAG
* * * **
4623055 TGCATCGATGCATGAAGTGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGTCTTG
1 TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGACTAA
*
4623119 TGCATCGATGCATCAAATGCATTTGATGTTTTCATAGAA-A-CCTGAGTGCATCGATGCAT-AC-
1 TGCATCGATGCATCAAATGCATTCGATG-TTTCA-A-AATAGCCTGAGTGCATCGATGCATGACT
4623180 AA
63 AA
4623182 TGCATTCGATG
1 TGCA-TCGATG
4623193 TTCAATTTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
63 4 0.06
64 32 0.50
65 24 0.38
66 2 0.03
67 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (64 bp):
TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGACTAA
Found at i:4623230 original size:20 final size:20
Alignment explanation
Indices: 4623205--4623242 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4623195 CAATTTATTC
4623205 ATTGGTGCATCGATGCATGG
1 ATTGGTGCATCGATGCATGG
*
4623225 ATTGGTGCATCGGTGCAT
1 ATTGGTGCATCGATGCAT
4623243 TTCTTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (20 bp):
ATTGGTGCATCGATGCATGG
Found at i:4623522 original size:27 final size:26
Alignment explanation
Indices: 4623491--4623548 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 26
4623481 TGTTTTCAAC
4623491 AATATATTTTATTCTTATTCTAAATTA
1 AATATATTTTATTCTTA-TCTAAATTA
* *
4623518 AATATATTTTATTCTTATCTTATTTA
1 AATATATTTTATTCTTATCTAAATTA
4623544 AATAT
1 AATAT
4623549 CTTAACTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 12 0.41
27 17 0.59
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (26 bp):
AATATATTTTATTCTTATCTAAATTA
Found at i:4624273 original size:20 final size:20
Alignment explanation
Indices: 4624244--4624283 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
4624234 TAGAAATCTT
4624244 AAAAACATGAAAAAGTTAAA
1 AAAAACATGAAAAAGTTAAA
* * *
4624264 AAAAAGATGATAAATTTAAA
1 AAAAACATGAAAAAGTTAAA
4624284 TAGGGTAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.10, T:0.20
Consensus pattern (20 bp):
AAAAACATGAAAAAGTTAAA
Found at i:4626790 original size:18 final size:18
Alignment explanation
Indices: 4626769--4626809 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
4626759 AATGGCTGTT
4626769 TCTGAACCTGTTGCTGCC
1 TCTGAACCTGTTGCTGCC
* * *
4626787 TCTGAATCTGTTGTTGCT
1 TCTGAACCTGTTGCTGCC
4626805 TCTGA
1 TCTGA
4626810 CCGATTGAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.41
Consensus pattern (18 bp):
TCTGAACCTGTTGCTGCC
Found at i:4632334 original size:18 final size:17
Alignment explanation
Indices: 4632311--4632344 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
4632301 GAAAGGTACC
*
4632311 AAAGAAGCAAAACTAATA
1 AAAGAACCAAAA-TAATA
4632329 AAAGAACCAAAATAAT
1 AAAGAACCAAAATAAT
4632345 GAAGAATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.68, C:0.12, G:0.09, T:0.12
Consensus pattern (17 bp):
AAAGAACCAAAATAATA
Found at i:4634429 original size:6 final size:6
Alignment explanation
Indices: 4634417--4634461 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
4634407 TTAAACAAAA
* * *
4634417 CAATCC TAATCC TAATCC TAATCC CAATCC CAATCC CAATCC CAA
1 CAATCC CAATCC CAATCC CAATCC CAATCC CAATCC CAATCC CAA
4634462 ACTCAAATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.36, C:0.42, G:0.00, T:0.22
Consensus pattern (6 bp):
CAATCC
Found at i:4636277 original size:42 final size:42
Alignment explanation
Indices: 4636218--4636301 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
4636208 CTATTATATT
*
4636218 ACACTTGATGAACTTTATAAGCATAGGCATAAGCATGCTATC
1 ACACTTGATGAACTTTATAAGCATAGGCATAAACATGCTATC
*
4636260 ACACTTGATGAACTTTATAAGCATAGGCATAAACATTCTATC
1 ACACTTGATGAACTTTATAAGCATAGGCATAAACATGCTATC
4636302 GCAAAATAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (42 bp):
ACACTTGATGAACTTTATAAGCATAGGCATAAACATGCTATC
Found at i:4643078 original size:12 final size:12
Alignment explanation
Indices: 4643061--4643109 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
4643051 ATTATTTAAT
4643061 TTTATCTATCTA
1 TTTATCTATCTA
*
4643073 TTTATCTATTTA
1 TTTATCTATCTA
*
4643085 ATTATCTATC-A
1 TTTATCTATCTA
*
4643096 GTTAGTCTATCTA
1 TTTA-TCTATCTA
4643109 T
1 T
4643110 CTTTATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 4 0.13
12 25 0.83
13 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.04, T:0.55
Consensus pattern (12 bp):
TTTATCTATCTA
Found at i:4643104 original size:24 final size:25
Alignment explanation
Indices: 4643053--4643105 Score: 65
Period size: 24 Copynumber: 2.1 Consensus size: 25
4643043 TTATGATGAT
*
4643053 TATTTAATTTTATCTATCTATTTATC
1 TATTTAA-TTTATCTATCTAGTTATC
4643079 TATTTAA-TTATCTATC-AGTTAGTC
1 TATTTAATTTATCTATCTAGTTA-TC
4643103 TAT
1 TAT
4643106 CTATCTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 4 0.16
24 14 0.56
26 7 0.28
ACGTcount: A:0.28, C:0.11, G:0.04, T:0.57
Consensus pattern (25 bp):
TATTTAATTTATCTATCTAGTTATC
Found at i:4645863 original size:20 final size:20
Alignment explanation
Indices: 4645840--4645888 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
4645830 TCATTGTATT
4645840 TAGTTGCATTTAGGATCATA
1 TAGTTGCATTTAGGATCATA
4645860 TAGTTGCATTTAGGATCATA
1 TAGTTGCATTTAGGATCATA
4645880 TAGTTGCAT
1 TAGTTGCAT
4645889 ATGATGGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (20 bp):
TAGTTGCATTTAGGATCATA
Found at i:4651827 original size:10 final size:10
Alignment explanation
Indices: 4651812--4651843 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
4651802 GTTTATGTTT
4651812 CTTGTTCATA
1 CTTGTTCATA
4651822 CTTGTTCATA
1 CTTGTTCATA
4651832 CTTGTTCATA
1 CTTGTTCATA
4651842 CT
1 CT
4651844 GTTTTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.19, C:0.22, G:0.09, T:0.50
Consensus pattern (10 bp):
CTTGTTCATA
Found at i:4654882 original size:23 final size:23
Alignment explanation
Indices: 4654856--4654916 Score: 113
Period size: 23 Copynumber: 2.7 Consensus size: 23
4654846 CTCGTATAAA
4654856 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
4654879 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
4654902 TGCACCGAAGTGCCA
1 TGCACCGAAGTGCCA
4654917 TATAAAATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.16
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:4661749 original size:3 final size:3
Alignment explanation
Indices: 4661741--4661811 Score: 65
Period size: 3 Copynumber: 23.7 Consensus size: 3
4661731 CGAAACAATT
* * * * *
4661741 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA CTA CTA CTA CTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4661788 TTA TT- TTA TTTA TTA TTTA TTA TT
1 TTA TTA TTA -TTA TTA -TTA TTA TT
4661812 TTACATATTA
Statistics
Matches: 62, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
2 4 0.06
3 52 0.84
4 6 0.10
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:4667863 original size:6 final size:6
Alignment explanation
Indices: 4667854--4667946 Score: 52
Period size: 6 Copynumber: 15.7 Consensus size: 6
4667844 AGAGAAATTT
* * *
4667854 AGAAAA AG-AAA AG-AAA AGAAATA AGTAAAA AGAAAAA AGGAAA TG-AGA
1 AGAAAA AGAAAA AGAAAA AGAAA-A AG-AAAA AG-AAAA AGAAAA AGAAAA
* * * *
4667902 AGAAAA A-AGAA AGAGAAA A-AAGA AGAAAA AGAAGA AGAAAG AGAA
1 AGAAAA AGAAAA AGA-AAA AGAAAA AGAAAA AGAAAA AGAAAA AGAA
4667947 CATATCAAGT
Statistics
Matches: 67, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
5 20 0.30
6 29 0.43
7 15 0.22
8 3 0.04
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (6 bp):
AGAAAA
Found at i:4667873 original size:24 final size:24
Alignment explanation
Indices: 4667829--4667946 Score: 95
Period size: 24 Copynumber: 4.9 Consensus size: 24
4667819 ATTCATATTC
*
4667829 AAGAAAAA-AAAGGAAAGAGAAATT
1 AAGAAAAAGAAAAGAAAGAGAAA-T
*
4667853 TAGAAAAAGAAAAGAAA-AGAAAT
1 AAGAAAAAGAAAAGAAAGAGAAAT
4667876 AAGTAAAAAG-AAA-AAAG-GAAAT
1 AAG-AAAAAGAAAAGAAAGAGAAAT
* * *
4667898 GAGAAGAA-AAAAGAAAGAGAAAAAAG
1 AAGAAAAAGAAAAGAAAGAG---AAAT
4667924 AAGAAAAAGAAGAAGAAAGAGAA
1 AAGAAAAAGAA-AAGAAAGAGAA
4667947 CATATCAAGT
Statistics
Matches: 75, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
21 7 0.09
22 14 0.19
23 7 0.09
24 18 0.24
25 9 0.12
26 9 0.12
27 2 0.03
28 9 0.12
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.05
Consensus pattern (24 bp):
AAGAAAAAGAAAAGAAAGAGAAAT
Found at i:4667906 original size:18 final size:17
Alignment explanation
Indices: 4667883--4667942 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 17
4667873 AATAAGTAAA
4667883 AAGAAAAAAGGAAATGAG
1 AAGAAAAAAGGAAA-GAG
4667901 AAGAAAAAA-GAAAGAG
1 AAGAAAAAAGGAAAGAG
*
4667917 AA-AAAAGAA-GAAAAAG
1 AAGAAAA-AAGGAAAGAG
*
4667933 AAGAAGAAAG
1 AAGAAAAAAG
4667943 AGAACATATC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
15 4 0.11
16 17 0.46
17 7 0.19
18 9 0.24
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (17 bp):
AAGAAAAAAGGAAAGAG
Found at i:4667922 original size:32 final size:31
Alignment explanation
Indices: 4667856--4667934 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
4667846 AGAAATTTAG
*
4667856 AAAAAGAAAAGAAAAGAAATAAGTAAAAAGA
1 AAAAAGAAAAGAAAAGAAAAAAGTAAAAAGA
* * *
4667887 AAAAAGGAAATGAGAAGAAAAAAG-AAAGAGA
1 AAAAA-GAAAAGAAAAGAAAAAAGTAAAAAGA
*
4667918 AAAAAGAAGA-AAAAGAA
1 AAAAAGAAAAGAAAAGAA
4667935 GAAGAAAGAG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 6 0.15
30 3 0.08
31 16 0.40
32 15 0.38
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (31 bp):
AAAAAGAAAAGAAAAGAAAAAAGTAAAAAGA
Found at i:4667935 original size:32 final size:32
Alignment explanation
Indices: 4667856--4667943 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 32
4667846 AGAAATTTAG
* *
4667856 AAAAAGAA-AAGAA-AAGAAATAAGTAAAAAGA
1 AAAAAGAAGAAAAAGAAGAAAAAAG-AAAAAGA
* *
4667887 AAAAAG--GAAATGAGAAGAAAAAAGAAAGAGA
1 AAAAAGAAGAAA-AAGAAGAAAAAAGAAAAAGA
*
4667918 AAAAAGAAGAAAAAGAAGAAGAAAGA
1 AAAAAGAAGAAAAAGAAGAAAAAAGA
4667944 GAACATATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
30 2 0.04
31 19 0.41
32 21 0.46
33 4 0.09
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (32 bp):
AAAAAGAAGAAAAAGAAGAAAAAAGAAAAAGA
Found at i:4667936 original size:25 final size:25
Alignment explanation
Indices: 4667854--4667937 Score: 72
Period size: 23 Copynumber: 3.5 Consensus size: 25
4667844 AGAGAAATTT
*
4667854 AGAAAAAG-A-AAAGA-AAAGAAATA
1 AGAAAAAGAAGAAAGAGAAA-AAAGA
* **
4667877 AGTAAAAAGAAAAAAG-GAAATGAGA
1 AG-AAAAAGAAGAAAGAGAAAAAAGA
4667902 AG-AAAA-AAGAAAGAGAAAAAAGA
1 AGAAAAAGAAGAAAGAGAAAAAAGA
4667925 AGAAAAAGAAGAA
1 AGAAAAAGAAGAA
4667938 GAAAGAGAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
22 6 0.12
23 15 0.31
24 10 0.21
25 10 0.21
26 7 0.15
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (25 bp):
AGAAAAAGAAGAAAGAGAAAAAAGA
Found at i:4667946 original size:9 final size:9
Alignment explanation
Indices: 4667893--4667946 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
4667883 AAGAAAAAAG
4667893 GAAATGAGAA
1 GAAA-GAGAA
4667903 GAAA-A-AA
1 GAAAGAGAA
4667910 GAAAGAGAA
1 GAAAGAGAA
*
4667919 AAAAGAAGAA
1 GAAAG-AGAA
4667929 -AAAGAAGAA
1 GAAAG-AGAA
4667938 GAAAGAGAA
1 GAAAGAGAA
4667947 CATATCAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
7 6 0.15
8 2 0.05
9 19 0.49
10 12 0.31
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (9 bp):
GAAAGAGAA
Found at i:4669567 original size:45 final size:45
Alignment explanation
Indices: 4669427--4670421 Score: 963
Period size: 45 Copynumber: 22.4 Consensus size: 45
4669417 GAAACCTCAA
*
4669427 CTTGACTTTCTCGTGAAGATGAGTCAAT-TTTTAGTGACTTG--ATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTG--TTGTCATT
* *
4669471 CTTGATTTTCTCGCGAAGAGGAGTCAATC-TTTAGTGTTGTCATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
*
4669515 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTCAGTGTTGTCATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * *
4669560 CTTGACTTTCTTGTGAAGAGGATTCAATCTTTTAGTGTTGTCCTT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* *** * * *
4669605 CTTGAATTTCTCAAAAAGAGGAGTCGATCTTTCAGTGTTGTCCTT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * * * **
4669650 CTTGACTTTCTCGCT-AAGAAGAGTCAA-CCTGTAATAATGTCATT
1 CTTGACTTTCTCG-TGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * *
4669694 TTTAACTTACTCGTGAAGAGGAGTCAATC-TTTAGTGTTGTCATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * * * *
4669738 CTTGACTTTGTCATGAAGAGGAGTTAATCTTTCAGTGTTTTCATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * * * * * *
4669783 CTTGACTTTCTTGTAAACATGAGTCAACCTTTTAGTGATGTTATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* *
4669828 CTTGACTTTCTCGCGAAGATGG-GTCAATCTTTTAGTGTTGTCTTT
1 CTTGACTTTCTCGTGAAGA-GGAGTCAATCTTTTAGTGTTGTCATT
* * *
4669873 CTTGAATTTCTCATGAAGAGGAGTCAATCTTTTAGTGTTGTCCTT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * * *
4669918 ATTGACTTTCTTGTGAAGAGGAGTCAA-CATTTTA-TGATGTTATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATC-TTTTAGTGTTGTCATT
* * * *
4669962 CTTGACTTTCTCTTGAAGAGGATTCAATATTTCAGTGTTGTCATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* *
4670007 CTTGACGTTCTCGTGAAGAGGAGTCAATC---------TGTCAGT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * * *
4670043 CTTGACTTTCTCGTGAGGAGGAGTCAATTTTTTAGTGTTGTCCTG
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
** * * * * *
4670088 CTTGACTTTCTCACGAAGAAGAGTCAACCTTTTAGTGATATAATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * ** *
4670133 ATTGACTTTCTCGTGAAGAGGATTCAA-CTTTTTAGTGAAGTTATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATC-TTTTAGTGTTGTCATT
* * * *
4670178 CTTGATTTTTTCGTGAAGATGAGTCAATCTTTCAGTGTTGTCATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
** * * *
4670223 CTTGACTTTCTCACGAAGAGAAGTCAATCTTTTAGTGGTGTTATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * * * *
4670268 CTTAACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTATCTTT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
** * *
4670313 CTTGACTTTCTCACGAATAGGAGTCAATCTTTTAGTGATT-T-TTT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTG-TTGTCATT
* * * * *
4670357 CTTGACTTTCTCATGAAGATGAGTCAACCTTTTACTGATGTCATT
1 CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
*
4670402 CTTGACTTTCTCGGGAAGAG
1 CTTGACTTTCTCGTGAAGAG
4670422 TCATCCTTTT
Statistics
Matches: 768, Mismatches: 156, Indels: 53
0.79 0.16 0.05
Matches are distributed among these distances:
36 32 0.04
42 3 0.00
43 2 0.00
44 201 0.26
45 526 0.68
46 4 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (45 bp):
CTTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
Found at i:4670047 original size:36 final size:36
Alignment explanation
Indices: 4670000--4670070 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
4669990 ATTTCAGTGT
*
4670000 TGTCATTCTTGACGTTCTCGTGAAGAGGAGTCAATC
1 TGTCAGTCTTGACGTTCTCGTGAAGAGGAGTCAATC
* *
4670036 TGTCAGTCTTGACTTTCTCGTGAGGAGGAGTCAAT
1 TGTCAGTCTTGACGTTCTCGTGAAGAGGAGTCAAT
4670071 TTTTTAGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (36 bp):
TGTCAGTCTTGACGTTCTCGTGAAGAGGAGTCAATC
Found at i:4670064 original size:81 final size:81
Alignment explanation
Indices: 4669961--4670114 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
4669951 ATGATGTTAT
* * * **
4669961 TCTTGACTTTCTCTTGAAGAGGATTCAATATTTCAGTGTTGTCATTCTTGACGTTCTCGTGAAGA
1 TCTTGACTTTCTCGTGAAGAGGAGTCAATATTTCAGTGTTGTCATGCTTGACGTTCTCACGAAGA
*
4670026 GGAGTCAATCTGTCAG
66 AGAGTCAATCTGTCAG
* * * * *
4670042 TCTTGACTTTCTCGTGAGGAGGAGTCAATTTTTTAGTGTTGTCCTGCTTGACTTTCTCACGAAGA
1 TCTTGACTTTCTCGTGAAGAGGAGTCAATATTTCAGTGTTGTCATGCTTGACGTTCTCACGAAGA
4670107 AGAGTCAA
66 AGAGTCAA
4670115 CCTTTTAGTG
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.38
Consensus pattern (81 bp):
TCTTGACTTTCTCGTGAAGAGGAGTCAATATTTCAGTGTTGTCATGCTTGACGTTCTCACGAAGA
AGAGTCAATCTGTCAG
Found at i:4671516 original size:132 final size:131
Alignment explanation
Indices: 4671235--4671599 Score: 407
Period size: 132 Copynumber: 2.8 Consensus size: 131
4671225 GTATTTTCCC
* * * *
4671235 CGATTCATTCTT-TCCTGAAAAGAAGTGAAGTGAATCAAACTTTCCAGATCTGATCTACCCTGGA
1 CGATTCAATCTTCT-CTGAAGAGCAGTGAAGTGAATCAAAATTTCCAGATCTGATCTACCCTGGA
* * * * * * * * *
4671299 ATA-CAGCGGAGAAGATCC-ATTTTTGAGATGTGATCTTCCCTGAAGAGCATTGAGGTAAATCTA
65 A-AGCAGCGGAGCAGATCCTTTTTTTCATATTTGATCTTCCCTGAAGAGCAGTGAAGAAAATCAA
4671362 CCT
129 CCT
* * * * *
4671365 CGATTAAATATTC-CTTGAAGAGCAGCGAAGTGAATCAAAGTTTCTAGATCTGATCTACCCTGGA
1 CGATTCAATCTTCTC-TGAAGAGCAGTGAAGTGAATCAAAATTTCCAGATCTGATCTACCCTGGA
* ** * * *
4671429 ACGCAGCATAGCATATCCCTTTTTTTCATATTTGATCTTTCCTGAAGAGTAGTGAAGAAAATCAA
65 AAGCAGCGGAGCAGAT-CCTTTTTTTCATATTTGATCTTCCCTGAAGAGCAGTGAAGAAAATCAA
4671494 CCT
129 CCT
* *
4671497 CGATTCAATCTTCTCTGAAGAGCAATGAAGTGAATCAAAATTTCCAAATCTGATCTACCCT-GAA
1 CGATTCAATCTTCTCTGAAGAGCAGTGAAGTGAATCAAAATTTCCAGATCTGATCTACCCTGGAA
*
4671561 GAGTAGCGGAGCAGATCCTTTTTTTCATATTTGATCTTC
66 -AGCAGCGGAGCAGATCCTTTTTTTCATATTTGATCTTC
4671600 AAAAATCTCT
Statistics
Matches: 192, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
129 1 0.01
130 63 0.33
131 27 0.14
132 100 0.52
133 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (131 bp):
CGATTCAATCTTCTCTGAAGAGCAGTGAAGTGAATCAAAATTTCCAGATCTGATCTACCCTGGAA
AGCAGCGGAGCAGATCCTTTTTTTCATATTTGATCTTCCCTGAAGAGCAGTGAAGAAAATCAACC
T
Found at i:4672182 original size:15 final size:15
Alignment explanation
Indices: 4672159--4672190 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4672149 GACCCATTTA
4672159 TATAATTTAATTACC
1 TATAATTTAATTACC
*
4672174 TATACTTTAATTACC
1 TATAATTTAATTACC
4672189 TA
1 TA
4672191 GACTATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (15 bp):
TATAATTTAATTACC
Found at i:4675128 original size:21 final size:21
Alignment explanation
Indices: 4675103--4675147 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4675093 TAAGATGTTG
*
4675103 TTTTAATAAAATTAAAATTAT
1 TTTTAATAAAATGAAAATTAT
* *
4675124 TTTTATTAAAATGAAAATTGT
1 TTTTAATAAAATGAAAATTAT
4675145 TTT
1 TTT
4675148 GGGTGCCTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
TTTTAATAAAATGAAAATTAT
Found at i:4693793 original size:10 final size:10
Alignment explanation
Indices: 4693778--4693808 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
4693768 GTCAATCTAC
4693778 AATATATATA
1 AATATATATA
4693788 AATATATATA
1 AATATATATA
*
4693798 TATATATATA
1 AATATATATA
4693808 A
1 A
4693809 TTCACGAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
AATATATATA
Found at i:4693944 original size:56 final size:57
Alignment explanation
Indices: 4693835--4693951 Score: 200
Period size: 56 Copynumber: 2.1 Consensus size: 57
4693825 ACGACACACG
**
4693835 AATGTGTGTCATTTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
1 AATGTGTGTCATCCTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
*
4693892 AATGTGTGTCATCCTCATTTATGAC-GGGGCTTCAATGACGCGCAATGTAAGTCATA
1 AATGTGTGTCATCCTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
4693948 AATG
1 AATG
4693952 CCCGTCATAA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
56 34 0.60
57 23 0.40
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (57 bp):
AATGTGTGTCATCCTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
Found at i:4696018 original size:20 final size:20
Alignment explanation
Indices: 4695981--4696018 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4695971 AAAATCAAAC
*
4695981 AAAATATTAGATGGTAAAAT
1 AAAATATTAGATGCTAAAAT
4696001 AAAATATT-GAATGCTAAA
1 AAAATATTAG-ATGCTAAA
4696019 CAAAAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.55, C:0.03, G:0.13, T:0.29
Consensus pattern (20 bp):
AAAATATTAGATGCTAAAAT
Found at i:4697685 original size:80 final size:81
Alignment explanation
Indices: 4697474--4698083 Score: 575
Period size: 80 Copynumber: 7.3 Consensus size: 81
4697464 TTTTATTGAT
* * * * * * * *
4697474 AGATAGCCCTTCTTGCCTTGAGCTATGTTGTAAATTTGATTTGCCTCTGAGTTGAATGTAATCAA
1 AGATAACCCTTCTTGCCTTGAGCTATGCTGCAAA-TTGATGTGCCTTTGAGCTGAGTGTAATCGA
4697539 ACTCGAAGGTCTTTGATGAC
65 ACTCGAAGGTCTTTG--G-C
** ** * *
4697559 AGATAATTCTTCTCT-CCTTGAATTATGCTTCAAA-TGATGTGCCTTTGTGCTGAGTGTAATCGA
1 AGATAACCCTTCT-TGCCTTGAGCTATGCTGCAAATTGATGTGCCTTTGAGCTGAGTGTAATCGA
4697622 ACTCGAAGGTCTTTGGC
65 ACTCGAAGGTCTTTGGC
* *
4697639 AGAAAACCCTTCTTGCCTTGAGCTATGCTGCAAA-TGATGTTCCTTTGAGCTGAGTGTAATCGAA
1 AGATAACCCTTCTTGCCTTGAGCTATGCTGCAAATTGATGTGCCTTTGAGCTGAGTGTAATCGAA
4697703 CTCGAAGGTCTTTGGC
66 CTCGAAGGTCTTTGGC
* *
4697719 ATATAGCCCTTCTTGCCTTGAGCTATGCTGCAAA-TGATGTGCCTTTGAGCTGAGTGTAAT-GAA
1 AGATAACCCTTCTTGCCTTGAGCTATGCTGCAAATTGATGTGCCTTTGAGCTGAGTGTAATCGAA
*
4697782 CTCGAAGGACTTTTGTTGGC
66 CTCGAAGG---TCT-TTGGC
* * * * * *
4697802 AGATAGCTCTTCTCGCCTTGAGCTATGCTGTAAATTGGATATGCCTTTGAGTTGAGTGTAATCGA
1 AGATAACCCTTCTTGCCTTGAGCTATGCTGCAAATT-GATGTGCCTTTGAGCTGAGTGTAATCGA
4697867 ACTCGAAGGTCTTTTGTTGAC
65 ACTCGAAGGTC-TTTG--G-C
* * *
4697888 AGATATCCCTTCTCGCCTTGAGCTATGCTGCAAATTTGATGTGCCTTTGAGCTGAGTGTAGTCGA
1 AGATAACCCTTCTTGCCTTGAGCTATGCTGCAAA-TTGATGTGCCTTTGAGCTGAGTGTAATCGA
**
4697953 ACTCGAAGGTCTTTTTTGAA
65 ACTCGAAGGTC---TTTGGC
* * * * * * * * *
4697973 AGATAACCCTT-TTAACCTTGAGTTGTGTTGTAAATTTGATATACCTTTGAGCTGAATGTAATCA
1 AGATAACCCTTCTT-GCCTTGAGCTATGCTGCAAA-TTGATGTGCCTTTGAGCTGAGTGTAATCG
**
4698037 AACTATAAGGTCTTTGATGAC
64 AACTCGAAGGTCTTTG--G-C
* * *
4698058 AGATAGCTCTTCTCGCCTTGAGCTAT
1 AGATAACCCTTCTTGCCTTGAGCTAT
4698084 TTTGTACTTG
Statistics
Matches: 440, Mismatches: 64, Indels: 42
0.81 0.12 0.08
Matches are distributed among these distances:
79 12 0.03
80 127 0.29
81 1 0.00
82 6 0.01
83 77 0.17
84 3 0.01
85 126 0.29
86 81 0.18
87 2 0.00
88 5 0.01
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (81 bp):
AGATAACCCTTCTTGCCTTGAGCTATGCTGCAAATTGATGTGCCTTTGAGCTGAGTGTAATCGAA
CTCGAAGGTCTTTGGC
Found at i:4698089 original size:85 final size:85
Alignment explanation
Indices: 4697438--4698083 Score: 665
Period size: 85 Copynumber: 7.7 Consensus size: 85
4697428 GATTGTCATC
* * * * * *
4697438 GAGCTGAATGGAATCGAACTCGACA-AT-TTTATTGATAGATAGCCCTTCTTGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGA-AGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATG
* * * *
4697501 TTGTAAATTTGATTTGCCTCT
65 CTGCAAATTTGATGTGCCTTT
* * * * *** * **
4697522 GAGTTGAATGTAATCAAACTCGAAGGTCTTTGATGACAGATAATTCTTCTCTCCTTGAATTATGC
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGC
*
4697587 TTCAAA--TGATGTGCCTTT
66 TGCAAATTTGATGTGCCTTT
* * * *
4697605 GTGCTGAGTGTAATCGAACTCGAAGGTCTTTG--G-CAGAAAACCCTTCTTGCCTTGAGCTATGC
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGC
*
4697667 TGCAAA--TGATGTTCCTTT
66 TGCAAATTTGATGTGCCTTT
* *
4697685 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTG--G-CATATAGCCCTTCTTGCCTTGAGCTATGC
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGC
4697747 TGCAAA--TGATGTGCCTTT
66 TGCAAATTTGATGTGCCTTT
* * *
4697765 GAGCTGAGTGTAAT-GAACTCGAAGGACTTTTGTTGGCAGATAGCTCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATG
* * *
4697829 CTGTAAATTGGATATGCCTTT
65 CTGCAAATTTGATGTGCCTTT
* *
4697850 GAGTTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGACAGATATCCCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATG
4697915 CTGCAAATTTGATGTGCCTTT
65 CTGCAAATTTGATGTGCCTTT
* * * * * ** * * *
4697936 GAGCTGAGTGTAGTCGAACTCGAAGGTCTTTTTTGAAAGATAACCCTTTTAACCTTGAGTTGTGT
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGC
* * *
4698001 TGTAAATTTGATATACCTTT
66 TGCAAATTTGATGTGCCTTT
* * ** * *
4698021 GAGCTGAATGTAATCAAACTATAAGGTCTTTGATGACAGATAGCTCTTCTCGCCTTGAGCTAT
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTAT
4698084 TTTGTACTTG
Statistics
Matches: 472, Mismatches: 81, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
79 12 0.03
80 131 0.28
81 1 0.00
82 1 0.00
83 70 0.15
84 21 0.04
85 146 0.31
86 90 0.19
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (85 bp):
GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGC
TGCAAATTTGATGTGCCTTT
Found at i:4698370 original size:121 final size:122
Alignment explanation
Indices: 4698156--4698384 Score: 354
Period size: 121 Copynumber: 1.9 Consensus size: 122
4698146 GTCGATCCGT
* * * *
4698156 TGGGCATGATATCCTTCGTTGTGAAGTTGAAATCGTGAATGGCTCATTTGTTGTGAAGTTGAGCT
1 TGGGCACGATATCCTTCGTTGTGAAATTGAAATCGTGAATGGCTCATTCGTTGTGAAGTTGAACT
4698221 TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAA-GGGTTGCATTGCTGCTTG
66 TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATGGGTTGCATTGCTGCTTG
* *
4698277 TGGGCACGATATCCTT-TTTCGTGAAATTGAAATCGTGGATGGCTCATTCGTTGTGAAGTTGAAC
1 TGGGCACGATATCCTTCGTT-GTGAAATTGAAATCGTGAATGGCTCATTCGTTGTGAAGTTGAAC
* * *
4698341 TTTTAATTGGATATCCTTCGTCGTGAAGTTGCAATCCAATGGGT
65 TTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATGGGT
4698385 GTTTCACCAA
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
120 2 0.02
121 91 0.94
122 4 0.04
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (122 bp):
TGGGCACGATATCCTTCGTTGTGAAATTGAAATCGTGAATGGCTCATTCGTTGTGAAGTTGAACT
TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATGGGTTGCATTGCTGCTTG
Found at i:4698476 original size:65 final size:62
Alignment explanation
Indices: 4698347--4698512 Score: 246
Period size: 65 Copynumber: 2.6 Consensus size: 62
4698337 GAACTTTTAA
* * *
4698347 TTGGATATCCTTCGTCGTGAAGTTGCAATCCAA--TGGGTGTTTCACCAAATTGGTTTTGAG
1 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATTTGAGTGTTTCACCAAATTGGCTTTGAG
4698407 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTTGAGTAAGTTTCACCAAATTGGCTTTGAG
1 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAAT-TTGAGT--GTTTCACCAAATTGGCTTTGAG
*
4698472 TTGGATATCCTTCGTTGTGAAGTTGAAATCCAATATTGAGT
1 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAAT-TTGAGT
4698513 TGTATTGTGT
Statistics
Matches: 96, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
60 32 0.33
63 4 0.04
65 60 0.62
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.37
Consensus pattern (62 bp):
TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATTTGAGTGTTTCACCAAATTGGCTTTGAG
Found at i:4698758 original size:159 final size:157
Alignment explanation
Indices: 4698464--4698933 Score: 575
Period size: 159 Copynumber: 3.0 Consensus size: 157
4698454 CACCAAATTG
* * * *
4698464 GCTTTGAGTTGGATATCCTTCGTTGTGAAGTTGAAATCCAATATTGAGTTGTATTGTGTAACTTT
1 GCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTTGA---GTATTGTGT-ACTTC
*
4698529 GAGTTCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAACGAAACTTGGAAAGTTGTTTATA
62 GAGTTCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAACGAAACTTGGAAAGTTGTTTGTA
* *
4698594 AACAGAAGTCGCCCCTTCTCTGTGAAGTTGA
127 GACAGAAGTCGCCCCTTCCCTGTGAAGTTGA
* *
4698625 GCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAAT-CAATCTCGAGTAAATTGTGTCACTTCA
1 GCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTTGAGT--ATTGTGT-ACTTCG
* * * *
4698689 AGTTCAATATCATTCGCTGCGAAGTTGAAATTGACTCTGAACGAAACTTAGAAAGTTGTTTGTCG
63 AGTTCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAACGAAACTTGGAAAGTTGTTTGTAG
* *
4698754 ACAGATAGTCGCTCCTTCGCTGTGAAGTTGA
128 ACAGA-AGTCGCCCCTTCCCTGTGAAGTTGA
* * *
4698785 GCTTTGAATTAGATATCTTTCGTCGTGAAGTTGAAATCCAATCTTGTGTA----GT--TTCGAGT
1 GCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTTGAGTATTGTGTACTTCGAGT
* * * * *
4698844 TCAATATCCTTCGTTGTGAAGTTGAAATTGAGTCTAAATGAAAC-TGGAAAGTTGTTTGTTGAC-
66 TCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAACGAAACTTGGAAAGTTGTTTGTAGACA
*
4698907 --AGTCGCCCCTTCCCTGTTAAGTTGA
131 GAAGTCGCCCCTTCCCTGTGAAGTTGA
4698932 GC
1 GC
4698934 AACCACCATC
Statistics
Matches: 274, Mismatches: 31, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
147 24 0.09
151 17 0.06
152 44 0.16
155 2 0.01
157 2 0.01
159 76 0.28
160 65 0.24
161 44 0.16
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.35
Consensus pattern (157 bp):
GCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTTGAGTATTGTGTACTTCGAGT
TCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAACGAAACTTGGAAAGTTGTTTGTAGACA
GAAGTCGCCCCTTCCCTGTGAAGTTGA
Found at i:4699262 original size:25 final size:25
Alignment explanation
Indices: 4699214--4699262 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
4699204 CCAATATTCG
*
4699214 ATGTTGAATCTCCAAAAATTCCCCA
1 ATGTTGAATCTCCAAAAATGCCCCA
* * *
4699239 ATGTTGATTCTTCAAAGATGCCCC
1 ATGTTGAATCTCCAAAAATGCCCC
4699263 CATTGTTCCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (25 bp):
ATGTTGAATCTCCAAAAATGCCCCA
Found at i:4702277 original size:18 final size:17
Alignment explanation
Indices: 4702251--4702284 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
4702241 ATTTAGTGAG
4702251 ATAAGGAAAATATAAAAA
1 ATAAGGAAAATA-AAAAA
*
4702269 ATAATGAAAATAAAAA
1 ATAAGGAAAATAAAAA
4702285 GTCCTACCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.18
Consensus pattern (17 bp):
ATAAGGAAAATAAAAAA
Found at i:4703386 original size:20 final size:20
Alignment explanation
Indices: 4703349--4703386 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4703339 AAAATCAAAC
*
4703349 AAAATATTAGATGGTAAAAT
1 AAAATATTAGATGCTAAAAT
4703369 AAAATATT-GAATGCTAAA
1 AAAATATTAG-ATGCTAAA
4703387 CAAAAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.55, C:0.03, G:0.13, T:0.29
Consensus pattern (20 bp):
AAAATATTAGATGCTAAAAT
Found at i:4703649 original size:21 final size:20
Alignment explanation
Indices: 4703625--4703946 Score: 95
Period size: 21 Copynumber: 15.3 Consensus size: 20
4703615 CATATTCGCA
4703625 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAGTTC-CG
*
4703646 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAGTTC-CG
* * * *
4703667 TTGCAATTTATTCCAAATT-TG
1 TTGCGA--TAGTCCAAGTTCCG
* *
4703688 TTGCGATTTATTCCAAATT-CG
1 TTGCGA--TAGTCCAAGTTCCG
* *
4703709 TTGCGATTTATTCCAAATT-CG
1 TTGCGA--TAGTCCAAGTTCCG
* *
4703730 TTACGATAGTCGAAGTTCCCG
1 TTGCGATAGTCCAAGTT-CCG
* *
4703751 TTGCTATTTATTCCAAGTT-CG
1 TTGCGA--TAGTCCAAGTTCCG
*
4703772 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAGTTC-CG
* * *
4703793 TTGCGATTTATTCCAAATT-TG
1 TTGCGA--TAGTCCAAGTTCCG
* * * *
4703814 TTGTGATTTATTCCAAATT-TG
1 TTGCGA--TAGTCCAAGTTCCG
* * *
4703835 TTGTGATTTATTCCAAATT-CG
1 TTGCGA--TAGTCCAAGTTCCG
* *
4703856 TTGCGATTTATTCCAAATT-CG
1 TTGCGA--TAGTCCAAGTTCCG
4703877 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAGTTC-CG
* *
4703898 TTGCGATTTATTCTAAGTT-CG
1 TTGCGA--TAGTCCAAGTTCCG
* *
4703919 TTACGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAGTTC-CG
4703940 TTGCGAT
1 TTGCGAT
4703947 TTATTCCAAA
Statistics
Matches: 251, Mismatches: 34, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
19 35 0.14
21 182 0.73
23 34 0.14
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.39
Consensus pattern (20 bp):
TTGCGATAGTCCAAGTTCCG
Found at i:4703691 original size:42 final size:42
Alignment explanation
Indices: 4703644--4704034 Score: 243
Period size: 42 Copynumber: 9.3 Consensus size: 42
4703634 TCCAAGTTCG
*
4703644 CGTTGCGATAGTCGAAGTTCGCGTTGCAATTTATTCCAAATT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
* * * *
4703686 TGTTGCGATTTATTCCAAATT--CGTTGCGATTTATTCCAAATT
1 CGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
* * * *
4703728 CGTTACGATAGTCGAAGTTCCCGTTGCTATTTATTCCAAGTT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
4703770 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
* * * * * * *
4703812 TGTTGTGATTTATTCCAAATT--TGTTGTGATTTATTCCAAATT
1 CGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
* * * * *
4703854 CGTTGCGATTTATTCCAAATT--CGTTGCGA--TAGTCCAAGTT
1 CGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
* * * * * *
4703894 CGCGTTGCGATTTATTCTAAGTT--CGTTACGA--TAGTCGAAGTT
1 --CGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
* * * * *
4703936 CGCGTTGCGATTTATTCCAAATT--CATTGTGATTTATTCCAAATT
1 --CGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
* *
4703980 CGTTGCGATAGTCGAAGTTCACGTTGCAATTTATTCCAAATT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
*
4704022 TGTTGCGATAGTC
1 CGTTGCGATAGTC
4704035 CAAAATCGCA
Statistics
Matches: 289, Mismatches: 48, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
40 25 0.09
42 240 0.83
44 24 0.08
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (42 bp):
CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
Found at i:4703858 original size:105 final size:105
Alignment explanation
Indices: 4703687--4704030 Score: 419
Period size: 105 Copynumber: 3.3 Consensus size: 105
4703677 TTCCAAATTT
* * * *
4703687 GTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTACGA--TAGTCGAAGTTCCC
1 GTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATT--C
*
4703750 GTTGCTATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGC
64 GTTGCTATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGC
* * * *
4703792 GTTGCGATTTATTCCAAATTTGTTGTGATTTATTCCAAATTTGTTGTGATTTATTCCAAATTCGT
1 GTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGT
* *
4703857 TGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCGC
66 TGCTATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGC
* * * * * *
4703897 GTTGCGATTTATTCTAAGTTCGTTACGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTC
1 GTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATT--CGTTGCGATTTATTCCAAATTC
* *
4703960 ATTG-TGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCAC
64 GTTGCT-ATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGC
* *
4704002 GTTGCAATTTATTCCAAATTTGTTGCGAT
1 GTTGCGATTTATTCCAAATTCGTTGCGAT
4704031 AGTCCAAAAT
Statistics
Matches: 203, Mismatches: 30, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
103 8 0.04
105 187 0.92
107 8 0.04
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (105 bp):
GTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGT
TGCTATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGC
Found at i:4703893 original size:147 final size:147
Alignment explanation
Indices: 4703672--4704037 Score: 565
Period size: 147 Copynumber: 2.5 Consensus size: 147
4703662 TCGCGTTGCA
*
4703672 ATTTATTCCAAATTTGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTACGAT
1 ATTTATTCCAAATTTGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTGCGAT
* * *
4703737 AGTCGAAGTTCCCGTTGCTATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
66 AGTCCAAGTTCCCGTTGCGATTTATTCCAAGTTCGTTACGATAGTCGAAGTTCGCGTTGCGATTT
**
4703802 ATTCCAAATTTGTTGTG
131 ATTCCAAATTCATTGTG
*
4703819 ATTTATTCCAAATTTGTTGTGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTGCGAT
1 ATTTATTCCAAATTTGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTGCGAT
* *
4703884 AGTCCAAGTTCGCGTTGCGATTTATTCTAAGTTCGTTACGATAGTCGAAGTTCGCGTTGCGATTT
66 AGTCCAAGTTCCCGTTGCGATTTATTCCAAGTTCGTTACGATAGTCGAAGTTCGCGTTGCGATTT
4703949 ATTCCAAATTCATTGTG
131 ATTCCAAATTCATTGTG
* * * * * *
4703966 ATTTATTCCAAATTCGTTGCGA--TAGTCGAAGTTCACGTTGCAATTTATTCCAAATTTGTTGCG
1 ATTTATTCCAAATTTGTTGCGATTTATTCCAAATT--CGTTGCGATTTATTCCAAATTCGTTGCG
4704029 ATAGTCCAA
64 ATAGTCCAA
4704038 AATCGCAATG
Statistics
Matches: 201, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
145 8 0.04
147 193 0.96
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.41
Consensus pattern (147 bp):
ATTTATTCCAAATTTGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTGCGAT
AGTCCAAGTTCCCGTTGCGATTTATTCCAAGTTCGTTACGATAGTCGAAGTTCGCGTTGCGATTT
ATTCCAAATTCATTGTG
Found at i:4703942 original size:63 final size:62
Alignment explanation
Indices: 4703687--4704030 Score: 198
Period size: 63 Copynumber: 5.5 Consensus size: 62
4703677 TTCCAAATTT
* * *
4703687 GTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTACGATAGTCGAAGTTCCC
1 GTTGCGA-TTAGTCCAAATTCATTGCGATTTATTCCAAATTCGTTACGATAGTCGAAGTTCAC
* * * * * * * * * * *
4703750 GTTGCTATTTATTCCAAGTTCGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT-
1 GTTGCGA-TTAGTCCAAATTCATTGCGATTTATTCCAAATT--CGTTACGA--TAGTCGAAGTTC
*
4703812 -T
61 AC
* * ** * * * * *
4703813 GTTGTGATTTATTCCAAATTTGTTGTGATTTATTCCAAATTCGTTGCGATTTATTCCAAATT--C
1 GTTGCGA-TTAGTCCAAATTCATTGCGATTTATTCCAAATTCGTTACGA--TAGTCGAAGTTCAC
* * * * *
4703876 GTTGCGA-TAGTCCAAGTTCGCGTTGCGATTTATTCTAAGTTCGTTACGATAGTCGAAGTTCGC
1 GTTGCGATTAGTCCAAATT--CATTGCGATTTATTCCAAATTCGTTACGATAGTCGAAGTTCAC
* * *
4703939 GTTGCGATTTATTCCAAATTCATTGTGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCAC
1 GTTGCGA-TTAGTCCAAATTCATTGCGATTTATTCCAAATTCGTTACGATAGTCGAAGTTCAC
* * **
4704002 GTTGCAATTTATTCCAAATTTGTTGCGAT
1 GTTGCGA-TTAGTCCAAATTCATTGCGAT
4704031 AGTCCAAAAT
Statistics
Matches: 227, Mismatches: 42, Indels: 24
0.77 0.14 0.08
Matches are distributed among these distances:
61 25 0.11
63 177 0.78
65 25 0.11
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (62 bp):
GTTGCGATTAGTCCAAATTCATTGCGATTTATTCCAAATTCGTTACGATAGTCGAAGTTCAC
Found at i:4704134 original size:6 final size:6
Alignment explanation
Indices: 4704123--4704147 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4704113 GACACGTATT
4704123 ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG A
4704148 GACGAGAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:4704785 original size:21 final size:21
Alignment explanation
Indices: 4704759--4704830 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
4704749 CAATACCACT
4704759 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
* * *
4704780 ATCGCAACGTGAACTTCGACT--
1 ATCGCAAC--GAATTTGGAATAA
*
4704801 ATCGCAATGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
4704822 ATCGCAACG
1 ATCGCAACG
4704831 CGAACTTCGA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
19 8 0.21
21 23 0.59
23 8 0.21
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (21 bp):
ATCGCAACGAATTTGGAATAA
Found at i:4704803 original size:42 final size:42
Alignment explanation
Indices: 4704756--4704889 Score: 218
Period size: 42 Copynumber: 3.2 Consensus size: 42
4704746 ATGCAATACC
*
4704756 ACTATCGCAACGAATTTGGAATAAATCGCAACGTGAACTTCG
1 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
*
4704798 ACTATCGCAATGAATTTGGAATAAATCGCAACGCGAACTTCG
1 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
* *
4704840 ACTATCGCAACAAATTTGG-A-AAATCGCAACGCGAACTTGG
1 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
4704880 ACTATCGCAA
1 ACTATCGCAA
4704890 TGCGAATATG
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 29 0.33
41 1 0.01
42 57 0.66
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (42 bp):
ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
Found at i:4704846 original size:21 final size:21
Alignment explanation
Indices: 4704780--4704895 Score: 87
Period size: 21 Copynumber: 5.6 Consensus size: 21
4704770 TTTGGAATAA
* *
4704780 ATCGCAACGTGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
* * *
4704801 ATCGCAA--TGAATTTGGAAT
1 ATCGCAACGCGAACTTGGACT
*
4704820 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTGGACT
* * **
4704843 ATCGCAA--CAAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
4704862 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
*
4704883 ATCGCAATGCGAA
1 ATCGCAACGCGAA
4704896 TATGTAAATC
Statistics
Matches: 72, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
19 23 0.32
21 41 0.57
23 8 0.11
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (21 bp):
ATCGCAACGCGAACTTGGACT
Found at i:4704957 original size:21 final size:21
Alignment explanation
Indices: 4704931--4705086 Score: 74
Period size: 21 Copynumber: 7.5 Consensus size: 21
4704921 AATTTGGAAA
* *
4704931 ATCGCAACGCGAGCTTCGACT
1 ATCGCAATGCGAACTTCGACT
* *
4704952 ATCGCAATGCAAACTTGGACT
1 ATCGCAATGCGAACTTCGACT
*
4704973 ATCGCAATGCGAA-TAT-GTA-A
1 ATCGCAATGCGAACT-TCG-ACT
*
4704993 ATCGCAA-GTCGAAGTTCG-CGT
1 ATCGCAATG-CGAACTTCGAC-T
* * * **
4705014 -T-GCGATAGTCGAATTTGGAAA
1 ATCGCAAT-G-CGAACTTCGACT
* *
4705035 ATCGCAACGAGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
* *
4705056 ATCACAATGCGAACTTGGACT
1 ATCGCAATGCGAACTTCGACT
4705077 ATCGCAATGC
1 ATCGCAATGC
4705087 AAATATGTAA
Statistics
Matches: 99, Mismatches: 24, Indels: 24
0.67 0.16 0.16
Matches are distributed among these distances:
19 4 0.04
20 15 0.15
21 75 0.76
22 2 0.02
23 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (21 bp):
ATCGCAATGCGAACTTCGACT
Found at i:4705042 original size:104 final size:104
Alignment explanation
Indices: 4704910--4705098 Score: 333
Period size: 104 Copynumber: 1.8 Consensus size: 104
4704900 TAAATCACAA
* * *
4704910 TGCGATAGTCGAATTTGGAAAATCGCAACGCGAGCTTCGACTATCGCAATGCAAACTTGGACTAT
1 TGCGATAGTCGAATTTGGAAAATCGCAACGAGAACTTCGACTATCACAATGCAAACTTGGACTAT
*
4704975 CGCAATGCGAATATGTAAATCGCAAGTCGAAGTTCGCGT
66 CGCAATGCAAATATGTAAATCGCAAGTCGAAGTTCGCGT
*
4705014 TGCGATAGTCGAATTTGGAAAATCGCAACGAGAACTTCGACTATCACAATGCGAACTTGGACTAT
1 TGCGATAGTCGAATTTGGAAAATCGCAACGAGAACTTCGACTATCACAATGCAAACTTGGACTAT
4705079 CGCAATGCAAATATGTAAAT
66 CGCAATGCAAATATGTAAAT
4705099 TGTAAATCGC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 80 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (104 bp):
TGCGATAGTCGAATTTGGAAAATCGCAACGAGAACTTCGACTATCACAATGCAAACTTGGACTAT
CGCAATGCAAATATGTAAATCGCAAGTCGAAGTTCGCGT
Found at i:4705392 original size:30 final size:30
Alignment explanation
Indices: 4705326--4705403 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
4705316 ATGTTAAAAT
* * *
4705326 ATAAAAAATAATAAAATATTAATTTATAAA
1 ATAATAAATAATAAAATATAAATTTAGAAA
* *
4705356 AAAATAAAT-ATAAAATATAAAATTTAGGAA
1 ATAATAAATAATAAAATAT-AAATTTAGAAA
4705386 ATAAT-AATAATAATAATA
1 ATAATAAATAATAA-AATA
4705404 ATAATAATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 12 0.31
30 23 0.59
31 4 0.10
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (30 bp):
ATAATAAATAATAAAATATAAATTTAGAAA
Found at i:4705393 original size:3 final size:3
Alignment explanation
Indices: 4705385--4705411 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
4705375 AAATTTAGGA
4705385 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
4705412 TTCAAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:4708252 original size:17 final size:17
Alignment explanation
Indices: 4708230--4708291 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
4708220 AAATGTATAT
*
4708230 AATATATGATTTTTGAA
1 AATATATAATTTTTGAA
4708247 AATATATAATTTTTGAA
1 AATATATAATTTTTGAA
* * *
4708264 AACATATATAGTTTTGGA
1 AATATATA-ATTTTTGAA
*
4708282 AACATATAAT
1 AATATATAAT
4708292 ATACATAGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
17 24 0.62
18 15 0.38
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (17 bp):
AATATATAATTTTTGAA
Found at i:4708407 original size:20 final size:20
Alignment explanation
Indices: 4708336--4708407 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
4708326 AAACATATAT
* *
4708336 AATATTATATAATTATTTTAA
1 AATATAATATAATT-TTTGAA
* * *
4708357 AATATATTATAGTTTTGGAA
1 AATATAATATAATTTTTGAA
* *
4708377 AACATATTATAATTTTTGAA
1 AATATAATATAATTTTTGAA
4708397 AATATAATATA
1 AATATAATATA
4708408 TATATATTAT
Statistics
Matches: 41, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
20 30 0.73
21 11 0.27
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (20 bp):
AATATAATATAATTTTTGAA
Found at i:4708415 original size:31 final size:30
Alignment explanation
Indices: 4708380--4708439 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
4708370 TTTGGAAAAC
4708380 ATATTATA-A-TTTTTGAAAATATAATATATAT
1 ATATTATATAGTTTTT--AAATA-AATATATAT
4708411 ATATTATATAGTTTTTAAATAAATATATA
1 ATATTATATAGTTTTTAAATAAATATATA
4708440 ATGTACGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 8 0.30
31 13 0.48
32 1 0.04
33 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
ATATTATATAGTTTTTAAATAAATATATAT
Found at i:4708464 original size:9 final size:9
Alignment explanation
Indices: 4708450--4708503 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
4708440 ATGTACGTAT
4708450 TATATTATA
1 TATATTATA
*
4708459 TATATTATT
1 TATATTATA
*
4708468 TATAGTATTA
1 TATATTA-TA
*
4708478 TTTATTATA
1 TATATTATA
*
4708487 TTTATTATA
1 TATATTATA
*
4708496 TTTATTAT
1 TATATTAT
4708504 TATTAATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
9 33 0.85
10 6 0.15
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (9 bp):
TATATTATA
Found at i:4708476 original size:12 final size:13
Alignment explanation
Indices: 4708446--4708504 Score: 52
Period size: 12 Copynumber: 4.6 Consensus size: 13
4708436 TATAATGTAC
4708446 GTATTATATTATAT
1 GTATTAT-TTATAT
*
4708460 ATATTATTTATA-
1 GTATTATTTATAT
4708472 GTATTATTTAT-T
1 GTATTATTTATAT
*
4708484 ATATT-TATTATAT
1 GTATTAT-TTATAT
*
4708497 TTATTATT
1 GTATTATT
4708505 ATTAATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
11 1 0.03
12 18 0.49
13 11 0.30
14 7 0.19
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (13 bp):
GTATTATTTATAT
Found at i:4708476 original size:21 final size:21
Alignment explanation
Indices: 4708447--4708516 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
4708437 ATAATGTACG
4708447 TATTATATTATATATATTATT
1 TATTATATTATATATATTATT
*
4708468 TA-TAGTATTATTTAT-TATATT
1 TATTA-TATTATATATAT-TATT
4708489 TATTATATT-TAT-TATTATT
1 TATTATATTATATATATTATT
* *
4708508 AATTTTATT
1 TATTATATT
4708517 TTTTGGTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 12 0.29
20 6 0.15
21 21 0.51
22 2 0.05
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (21 bp):
TATTATATTATATATATTATT
Found at i:4708492 original size:28 final size:28
Alignment explanation
Indices: 4708447--4708517 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
4708437 ATAATGTACG
*
4708447 TATTATATTATATATATTAT-TTATAGTAT
1 TATT-TATTATATTTATTATATT-TAGTAT
*
4708476 TATTTATTATATTTATTATATTTATTAT
1 TATTTATTATATTTATTATATTTAGTAT
* *
4708504 TATTAATTTTATTT
1 TATTTATTATATTT
4708518 TTTGGTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 31 0.84
29 6 0.16
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (28 bp):
TATTTATTATATTTATTATATTTAGTAT
Found at i:4708515 original size:9 final size:9
Alignment explanation
Indices: 4708475--4708517 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
4708465 ATTTATAGTA
4708475 TTATTTATT
1 TTATTTATT
*
4708484 ATATTTATT
1 TTATTTATT
*
4708493 ATATTTATT
1 TTATTTATT
*
4708502 ATTATTAATT
1 -TTATTTATT
4708512 TTATTT
1 TTATTT
4708518 TTTGGTTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 22 0.76
10 7 0.24
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (9 bp):
TTATTTATT
Found at i:4710979 original size:5 final size:5
Alignment explanation
Indices: 4710958--4710992 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
4710948 AAACACACAG
*
4710958 AAAAT AAATT GAAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAA
4710993 CCTGTGATCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:4711437 original size:46 final size:46
Alignment explanation
Indices: 4711353--4711489 Score: 174
Period size: 46 Copynumber: 3.0 Consensus size: 46
4711343 ATAAAGTGAC
* *
4711353 TTAACCTT-TTGATTAAAAGACTTAATA-TTTAATTTTATGAAAAGGT
1 TTAACCTTATTCATAAAAAGACTTAA-ACTTTAA-TTTATGAAAAGGT
* *
4711399 TTAACCTTATTCATAAAAAGACTTAAACTTTAACTTATGGAAAGGT
1 TTAACCTTATTCATAAAAAGACTTAAACTTTAATTTATGAAAAGGT
*
4711445 TTAACCTTATTCATAAAAAGAC-TCAACTTTAATTTAT-ATAAAGGT
1 TTAACCTTATTCATAAAAAGACTTAAACTTTAATTTATGA-AAAGGT
4711490 ATGATTGAAT
Statistics
Matches: 81, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
45 19 0.23
46 42 0.52
47 20 0.25
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (46 bp):
TTAACCTTATTCATAAAAAGACTTAAACTTTAATTTATGAAAAGGT
Found at i:4712324 original size:18 final size:18
Alignment explanation
Indices: 4712291--4712334 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
4712281 CCCTTAGTGT
*
4712291 ATCGGTGCACTAAAATTGC
1 ATCGATGCACTAAAA-TGC
4712310 ATCGATGCA-TAAAATGC
1 ATCGATGCACTAAAATGC
4712327 ATTCGATG
1 A-TCGATG
4712335 TTTTAAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 11 0.48
19 8 0.35
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (18 bp):
ATCGATGCACTAAAATGC
Found at i:4712380 original size:64 final size:63
Alignment explanation
Indices: 4712307--4712460 Score: 231
Period size: 64 Copynumber: 2.4 Consensus size: 63
4712297 GCACTAAAAT
* *
4712307 TGCATCGATGCATAAAATGCATTCGATGTTTT-A-AACAAGCCAGAGTGCATCGATGCGTGGTCT
1 TGCATCGATGCATAAAATGCATTCGATGTTTTCATAA-AA-CCAGAGTGCATCGATGCATGGT-A
4712370 G
63 G
*
4712371 TGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCTGAGTGCATCGATGCATGGTAG
1 TGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCAGAGTGCATCGATGCATGGTAG
*
4712434 TGAATCGATGCATAAAATGCATTCGAT
1 TGCATCGATGCATAAAATGCATTCGAT
4712461 ATGCTGAGTG
Statistics
Matches: 84, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
63 27 0.32
64 52 0.62
65 3 0.04
66 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (63 bp):
TGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCAGAGTGCATCGATGCATGGTAG
Found at i:4712490 original size:20 final size:20
Alignment explanation
Indices: 4712465--4712522 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
4712455 TTCGATATGC
4712465 TGAGTGCATCGATGCATCAA
1 TGAGTGCATCGATGCATCAA
4712485 TGAGTGCATCGATGCATCAA
1 TGAGTGCATCGATGCATCAA
*
4712505 TGAGTGCATCGGTGCATC
1 TGAGTGCATCGATGCATC
4712523 CCTTCTCAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (20 bp):
TGAGTGCATCGATGCATCAA
Found at i:4715121 original size:21 final size:21
Alignment explanation
Indices: 4715097--4715160 Score: 58
Period size: 24 Copynumber: 2.9 Consensus size: 21
4715087 TCGGTGCATC
4715097 TTCATGATGTATCGATGCACA
1 TTCATGATGTATCGATGCACA
* * *
4715118 TTCAAAGGGATGCATCGATGCACT
1 TTC--A-TGATGTATCGATGCACA
4715142 TTCAT-AGTGTATCGATGCA
1 TTCATGA-TGTATCGATGCA
4715161 TTATGCACTA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
20 1 0.03
21 14 0.41
22 1 0.03
23 1 0.03
24 17 0.50
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (21 bp):
TTCATGATGTATCGATGCACA
Found at i:4715153 original size:45 final size:42
Alignment explanation
Indices: 4715037--4715160 Score: 124
Period size: 45 Copynumber: 2.8 Consensus size: 42
4715027 AAAACCCGAC
** * * *
4715037 GGATGCATCGATGCATGGCCTTGTGCATCGATGCCCATTCAAG
1 GGATGCATCGATGCAT-TTCATGTGTATCGATGCACATTCAAG
*
4715080 GCG-TGCATCGGTGCATCTTCATGATGTATCGATGCACATTCAAAG
1 G-GATGCATCGATGCAT-TTCATG-TGTATCGATGCACATTC-AAG
4715125 GGATGCATCGATGCACTTTCATAGTGTATCGATGCA
1 GGATGCATCGATGCA-TTTCAT-GTGTATCGATGCA
4715161 TTATGCACTA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
43 16 0.24
44 17 0.25
45 32 0.48
46 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (42 bp):
GGATGCATCGATGCATTTCATGTGTATCGATGCACATTCAAG
Found at i:4721364 original size:19 final size:19
Alignment explanation
Indices: 4721340--4721386 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
4721330 AGCCAGAGTA
4721340 CATCGATGCATGGTCTGTG
1 CATCGATGCATGGTCTGTG
4721359 CATCGATGCATGGTCTGTG
1 CATCGATGCATGGTCTGTG
4721378 CATCGATGC
1 CATCGATGC
4721387 GTAAAATGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.17, C:0.23, G:0.30, T:0.30
Consensus pattern (19 bp):
CATCGATGCATGGTCTGTG
Found at i:4721427 original size:83 final size:82
Alignment explanation
Indices: 4721292--4721448 Score: 219
Period size: 83 Copynumber: 1.9 Consensus size: 82
4721282 TGCACTAAGA
*
4721292 GTGCATCGATGCATAAAATGCACTCGATGTTTTAAACAAGCCAGAGTACATCGATGCATGGTCTG
1 GTGCATCGATGCATAAAATGCACTCGATGTTTTAAACAAGCCAGAGTACATCGATGCATGGT-AG
4721357 TGCATCGATGCATGGTCT
65 TGCATCGATGCATGGTCT
* * * * *
4721375 GTGCATCGATGCGTAAAATGCATTTGATGTTTTCATAA-AA-CCTGAGTGCATCGATGCATGGTA
1 GTGCATCGATGCATAAAATGCACTCGATGTTTT-A-AACAAGCCAGAGTACATCGATGCATGGTA
4721438 GTGCATCGATG
64 GTGCATCGATG
4721449 TATAAAATAC
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
82 11 0.17
83 50 0.76
84 3 0.05
85 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (82 bp):
GTGCATCGATGCATAAAATGCACTCGATGTTTTAAACAAGCCAGAGTACATCGATGCATGGTAGT
GCATCGATGCATGGTCT
Found at i:4721505 original size:20 final size:20
Alignment explanation
Indices: 4721470--4721507 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4721460 TTCGATATGG
*
4721470 TGAGTGCATTGATGCATCAA
1 TGAGTGCATCGATGCATCAA
*
4721490 TGAGTGCATCGGTGCATC
1 TGAGTGCATCGATGCATC
4721508 CCTTCTCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (20 bp):
TGAGTGCATCGATGCATCAA
Found at i:4728634 original size:14 final size:13
Alignment explanation
Indices: 4728611--4728640 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
4728601 TGAAAGTAAC
4728611 AAACAAAAATTGA
1 AAACAAAAATTGA
4728624 AAACTAAAAATTGA
1 AAAC-AAAAATTGA
4728638 AAA
1 AAA
4728641 GAAATTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.17
Consensus pattern (13 bp):
AAACAAAAATTGA
Found at i:4734919 original size:13 final size:13
Alignment explanation
Indices: 4734896--4734930 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
4734886 TATTCAAAAC
4734896 AAAAGATAATTCCT
1 AAAA-ATAATTCCT
*
4734910 AAATATAATTCCT
1 AAAAATAATTCCT
4734923 AAAAATAA
1 AAAAATAA
4734931 AAATAAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 16 0.84
14 3 0.16
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (13 bp):
AAAAATAATTCCT
Found at i:4735099 original size:23 final size:22
Alignment explanation
Indices: 4735047--4735126 Score: 79
Period size: 23 Copynumber: 3.5 Consensus size: 22
4735037 GTTGACTGGG
*
4735047 TGCCACATCATATCCCACGTCAGC
1 TGCCACATC--ATCCCACGTCAAC
* *
4735071 TACCACATCATCGCCATGTCAAC
1 TGCCACATCATC-CCACGTCAAC
**
4735094 TGCCACATCATCACCACGTCATT
1 TGCCACATCATC-CCACGTCAAC
4735117 TGCCACATCA
1 TGCCACATCA
4735127 GTCGATGACT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
22 3 0.06
23 36 0.77
24 8 0.17
ACGTcount: A:0.28, C:0.40, G:0.10, T:0.23
Consensus pattern (22 bp):
TGCCACATCATCCCACGTCAAC
Found at i:4735352 original size:16 final size:16
Alignment explanation
Indices: 4735331--4735363 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
4735321 ATAATAAAAT
4735331 AATGTATAATTTAAAC
1 AATGTATAATTTAAAC
4735347 AATGTATAATTTAAAC
1 AATGTATAATTTAAAC
4735363 A
1 A
4735364 CTAATCATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (16 bp):
AATGTATAATTTAAAC
Found at i:4736318 original size:7 final size:7
Alignment explanation
Indices: 4736296--4736331 Score: 51
Period size: 6 Copynumber: 5.6 Consensus size: 7
4736286 CTAAATTGCG
4736296 AAAA-TT
1 AAAATTT
4736302 AAAA-TT
1 AAAATTT
4736308 AAAATTT
1 AAAATTT
4736315 AAAATTT
1 AAAATTT
4736322 -AAATTT
1 AAAATTT
4736328 AAAA
1 AAAA
4736332 ATCCTATTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.57
7 12 0.43
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:4736318 original size:13 final size:13
Alignment explanation
Indices: 4736296--4736331 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
4736286 CTAAATTGCG
4736296 AAAA-TTAAAATT
1 AAAATTTAAAATT
4736308 AAAATTTAAAATT
1 AAAATTTAAAATT
*
4736321 TAAATTTAAAA
1 AAAATTTAAAA
4736332 ATCCTATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATTTAAAATT
Found at i:4737931 original size:3 final size:3
Alignment explanation
Indices: 4737917--4737955 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
4737907 ATGTAATATT
* *
4737917 TAA TAT TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4737956 GTAAGATGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:4738545 original size:85 final size:85
Alignment explanation
Indices: 4738370--4738684 Score: 300
Period size: 85 Copynumber: 3.7 Consensus size: 85
4738360 GGTTGATAGG
* ** * *
4738370 CCCTCGAGCTGAATGGAATTGAACTCGATA-GTTTTGTGTTGACAGATAGCCC-TCATCGCCTTT
1 CCCTTGAGCTGAATGGAATCAAACTCGA-AGGTTTTG-GTTGACAGATAACCCTTC-TCGCCTTG
* ** ** *
4738433 AGCTATGTTGTAAATTTGGCATG
63 AGCTATGCTACAAATTTGATATA
* * * *
4738456 CCCTTGAGCTGAATGTAATCAAAC-CGGAAGGTTTTTGTTTACAGATAACCCTTCTTGCCTTGAG
1 CCCTTGAGCTGAATGGAATCAAACTC-GAAGGTTTTGGTTGACAGATAACCCTTCTCGCCTTGAG
*
4738520 TTATGCTACAAATTTGATATA
65 CTATGCTACAAATTTGATATA
4738541 CCCTTGAGCTGAATGGAATCAAACTCGAAGGTTTTGGTTGACAGATAACCCTTCTCGCCTTGAGC
1 CCCTTGAGCTGAATGGAATCAAACTCGAAGGTTTTGGTTGACAGATAACCCTTCTCGCCTTGAGC
** *
4738606 TATGCTGTAAATTTGATATG
66 TATGCTACAAATTTGATATA
*** * * * * *
4738626 TTATT-ATGTTGAATGTAATCGAACTCGAAGG-TTT-GTTGACAGATAGCCCTTCTCACCTT
1 CCCTTGA-GCTGAATGGAATCAAACTCGAAGGTTTTGGTTGACAGATAACCCTTCTCGCCTT
4738685 AAGATATACT
Statistics
Matches: 192, Mismatches: 32, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
83 23 0.12
84 4 0.02
85 135 0.70
86 30 0.16
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (85 bp):
CCCTTGAGCTGAATGGAATCAAACTCGAAGGTTTTGGTTGACAGATAACCCTTCTCGCCTTGAGC
TATGCTACAAATTTGATATA
Found at i:4738658 original size:170 final size:169
Alignment explanation
Indices: 4738370--4738678 Score: 394
Period size: 170 Copynumber: 1.8 Consensus size: 169
4738360 GGTTGATAGG
** * *
4738370 CCCTCGAGCTGAATGGAATTGAACTCGATAGTTTTGTGTTGACAGATAGCCCTCATCGCCTTTAG
1 CCCTCGAGCTGAATGGAATCAAACTCGATAGTTTTGTGTTGACAGATAACCCTCATCGCCTTGAG
* * * *
4738435 CTATGTTGTAAATTTGGCATGCCCTTGAGCTGAATGTAATCAAACCGGAAGGTTTTTGTTTACAG
66 CTATGCTGTAAATTTGACATGCCATTGAGCTGAATGTAATCAAACCGGAAGG--TTTGTTGACAG
4738500 ATAACCCTTCTTGCCTTGAGTTATGCTACAAATTTGATATA
129 ATAACCCTTCTTGCCTTGAGTTATGCTACAAATTTGATATA
*
4738541 CCCTTGAGCTGAATGGAATCAAACTCGA-AGGTTTTG-GTTGACAGATAACCCTTC-TCGCCTTG
1 CCCTCGAGCTGAATGGAATCAAACTCGATA-GTTTTGTGTTGACAGATAACCC-TCATCGCCTTG
* ** * *
4738603 AGCTATGCTGTAAATTTGATATGTTATT-ATGTTGAATGTAATCGAACTC-GAAGGTTTGTTGAC
64 AGCTATGCTGTAAATTTGACATGCCATTGA-GCTGAATGTAATCAAAC-CGGAAGGTTTGTTGAC
*
4738666 AGATAGCCCTTCT
127 AGATAACCCTTCT
4738679 CACCTTAAGA
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
168 20 0.17
169 1 0.01
170 64 0.54
171 34 0.29
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (169 bp):
CCCTCGAGCTGAATGGAATCAAACTCGATAGTTTTGTGTTGACAGATAACCCTCATCGCCTTGAG
CTATGCTGTAAATTTGACATGCCATTGAGCTGAATGTAATCAAACCGGAAGGTTTGTTGACAGAT
AACCCTTCTTGCCTTGAGTTATGCTACAAATTTGATATA
Found at i:4743755 original size:58 final size:59
Alignment explanation
Indices: 4743666--4743776 Score: 138
Period size: 58 Copynumber: 1.9 Consensus size: 59
4743656 TTAGATTGTA
* *
4743666 AAAATAAAAAAATAGAAACTTAAAGGACTAAAGTAACAAAAA-A-ACATTTAAAGGACT
1 AAAATAAAAAAACAGAAACTTAAAGGACTAAAATAACAAAAATAGACATTTAAAGGACT
* * *
4743723 AAAATATAAAAGACAGAAACTT-AAGTGGCTAAAATAGCAAAAATAGACATTTAA
1 AAAATA-AAAAAACAGAAACTTAAAG-GACTAAAATAACAAAAATAGACATTTAA
4743777 GGGATTGATC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
57 9 0.20
58 27 0.60
59 1 0.02
60 8 0.18
ACGTcount: A:0.60, C:0.09, G:0.12, T:0.19
Consensus pattern (59 bp):
AAAATAAAAAAACAGAAACTTAAAGGACTAAAATAACAAAAATAGACATTTAAAGGACT
Found at i:4744002 original size:41 final size:41
Alignment explanation
Indices: 4743957--4744086 Score: 99
Period size: 41 Copynumber: 3.2 Consensus size: 41
4743947 TAATTAATCC
4743957 TAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAA
1 TAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAA
* * * * * * * **
4743998 TAAACA-TGAGAGTCGAATTCAAATG--TTAACA-AAAACAAT-CC
1 TAAACATTTACA--CCAAATC-AGTGACCTAA-ATAAAA-GATGAA
4744039 TAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAA
1 TAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAA
4744080 TAAACAT
1 TAAACAT
4744087 GAGAGTCGAA
Statistics
Matches: 61, Mismatches: 18, Indels: 20
0.62 0.18 0.20
Matches are distributed among these distances:
39 3 0.05
40 11 0.18
41 33 0.54
42 11 0.18
43 3 0.05
ACGTcount: A:0.51, C:0.17, G:0.10, T:0.22
Consensus pattern (41 bp):
TAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAA
Found at i:4744046 original size:82 final size:82
Alignment explanation
Indices: 4743952--4744116 Score: 330
Period size: 82 Copynumber: 2.0 Consensus size: 82
4743942 AACTATAATT
4743952 AATCCTAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAATAAACATGAGAGTCGAATT
1 AATCCTAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAATAAACATGAGAGTCGAATT
4744017 CAAATGTTAACAAAAAC
66 CAAATGTTAACAAAAAC
4744034 AATCCTAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAATAAACATGAGAGTCGAATT
1 AATCCTAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAATAAACATGAGAGTCGAATT
4744099 CAAATGTTAACAAAAAC
66 CAAATGTTAACAAAAAC
4744116 A
1 A
4744117 TAATATATAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (82 bp):
AATCCTAAACATTTACACCAAATCAGTGACCTAAATAAAAGATGAATAAACATGAGAGTCGAATT
CAAATGTTAACAAAAAC
Found at i:4745283 original size:3 final size:3
Alignment explanation
Indices: 4745275--4745316 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
4745265 TATTTAAAAT
* *
4745275 TAA TAA TAA TAG TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4745317 GTAAGATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:4754730 original size:21 final size:21
Alignment explanation
Indices: 4754661--4754757 Score: 70
Period size: 21 Copynumber: 4.6 Consensus size: 21
4754651 AAAGGTTAAG
* *
4754661 ACCTTTCGATGAAAATACTTA
1 ACCTTTTGATGAAAAGACTTA
* * *
4754682 ACATTTTGATTAAAAGACTTC
1 ACCTTTTGATGAAAAGACTTA
* * *
4754703 TCTTTTTGATGAAAGGACTTA
1 ACCTTTTGATGAAAAGACTTA
* *
4754724 ACCTTTTTAT-AAAAGGATTTA
1 ACCTTTTGATGAAAA-GACTTA
* *
4754745 ATCTTTTCATGAA
1 ACCTTTTGATGAA
4754758 GAGAATTGTT
Statistics
Matches: 57, Mismatches: 17, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
20 3 0.05
21 52 0.91
22 2 0.04
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.40
Consensus pattern (21 bp):
ACCTTTTGATGAAAAGACTTA
Found at i:4756497 original size:31 final size:32
Alignment explanation
Indices: 4756378--4756516 Score: 151
Period size: 32 Copynumber: 4.4 Consensus size: 32
4756368 AGTCGAGGAT
4756378 TTACCTATGTTCTATGGAACATATGGACAGAA
1 TTACCTATGTTCTATGGAACATATGGACAGAA
* *
4756410 TTACCTATG-TCTTTCGGGACATATGGACAGAA
1 TTACCTATGTTCTAT-GGAACATATGGACAGAA
* * * *
4756442 TTACCTATG-TCTTTTGAGATATATGGACAGTA
1 TTACCTATGTTCTATGGA-ACATATGGACAGAA
* *
4756474 -TACCTATGTTCTAAGGAACATATGGACAG-T
1 TTACCTATGTTCTATGGAACATATGGACAGAA
*
4756504 TTACCTAGGTTCT
1 TTACCTATGTTCT
4756517 TTGGGACCTA
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
31 35 0.38
32 56 0.62
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (32 bp):
TTACCTATGTTCTATGGAACATATGGACAGAA
Found at i:4763697 original size:165 final size:165
Alignment explanation
Indices: 4763426--4763756 Score: 637
Period size: 165 Copynumber: 2.0 Consensus size: 165
4763416 AGTGCTATTT
4763426 GTCTCACTAAAAATCCCATCCAACACTCTAGAACTAAACACATGAAATTAGACATCACTTCATTA
1 GTCTCACTAAAAATCCCATCCAACACTCTAGAACTAAACACATGAAATTAGACATCACTTCATTA
*
4763491 GAGACCATGTCACTAAGGAAGATGTAGTTCTAGAATTTGTTGATACTTTGCCTCAATTAGCGGAT
66 GAGACCATGTCACTAAGGAAGATGTAGTTCTAGAATTTGTTGATACTTTGCATCAATTAGCGGAT
4763556 ATTTTTACAAAACCCTTAGAT-AGGAAAGGTTTTG
131 ATTTTTACAAAACCCTTAGATAAGGAAAGGTTTTG
4763590 GTCTCACTAAAAATCCCATCCAACACTCTAGAACTAAACACATTGAAATTAGACATCACTTCATT
1 GTCTCACTAAAAATCCCATCCAACACTCTAGAACTAAACACA-TGAAATTAGACATCACTTCATT
4763655 AGAGACCATGTCACTAAGGAAGATGTAGTTCTAGAATTTGTTGATACTTTGCATCAATTAGCGGA
65 AGAGACCATGTCACTAAGGAAGATGTAGTTCTAGAATTTGTTGATACTTTGCATCAATTAGCGGA
4763720 TATTTTTACAAAACCCTTAGATAAGGAAAGGTTTTG
130 TATTTTTACAAAACCCTTAGATAAGGAAAGGTTTTG
4763756 G
1 G
4763757 ACACTTAGGA
Statistics
Matches: 164, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
164 42 0.26
165 108 0.66
166 14 0.09
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (165 bp):
GTCTCACTAAAAATCCCATCCAACACTCTAGAACTAAACACATGAAATTAGACATCACTTCATTA
GAGACCATGTCACTAAGGAAGATGTAGTTCTAGAATTTGTTGATACTTTGCATCAATTAGCGGAT
ATTTTTACAAAACCCTTAGATAAGGAAAGGTTTTG
Found at i:4764547 original size:23 final size:25
Alignment explanation
Indices: 4764504--4764549 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
4764494 AGAATTTTAC
*
4764504 AAAATTTTAAATTTTCGAAATTAAA
1 AAAATGTTAAATTTTCGAAATTAAA
4764529 AAAATGTT-AATTTTC-AAATTA
1 AAAATGTTAAATTTTCGAAATTA
4764550 TTGTGTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (25 bp):
AAAATGTTAAATTTTCGAAATTAAA
Found at i:4772616 original size:2 final size:2
Alignment explanation
Indices: 4772609--4772640 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
4772599 GATTCATGGT
4772609 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4772641 ATTTCTCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4779667 original size:12 final size:12
Alignment explanation
Indices: 4779650--4779674 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4779640 CGGACCCAAA
4779650 ATTAATCGATCG
1 ATTAATCGATCG
4779662 ATTAATCGATCG
1 ATTAATCGATCG
4779674 A
1 A
4779675 AATTTCGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (12 bp):
ATTAATCGATCG
Found at i:4780498 original size:17 final size:17
Alignment explanation
Indices: 4780478--4780510 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4780468 GGGAAATACG
4780478 GCAATTACAACAGTCCA
1 GCAATTACAACAGTCCA
*
4780495 GCAATTGCAACAGTCC
1 GCAATTACAACAGTCC
4780511 TCATAGAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.18
Consensus pattern (17 bp):
GCAATTACAACAGTCCA
Found at i:4781021 original size:95 final size:96
Alignment explanation
Indices: 4780907--4781123 Score: 294
Period size: 95 Copynumber: 2.3 Consensus size: 96
4780897 CTGTTTTGAC
* * * * * * *
4780907 AGTATCGATACTACTACTCTATGTAGCATCGATATTATATATGGTATCGGTACCATTTTAGCATT
1 AGTATCGGTACTACTACTCTAAGTAGCACCGATATCATATATGGTATCGATACCAATTTAACATT
* *
4780972 CTGTTTTGACAGTATCGG-AAC-TACCTGAGA
66 CTGTTTTGACAGTATCGGTAACATAACTCA-A
* *
4781002 AGTATCGGTACTACAACTCTAAGTAGTACCGATATCATATATGGTATCGATACCAATTTAACATT
1 AGTATCGGTACTACTACTCTAAGTAGCACCGATATCATATATGGTATCGATACCAATTTAACATT
*
4781067 CTGTTTTGACAGTATCGGTATCATAACTCAA
66 CTGTTTTGACAGTATCGGTAACATAACTCAA
*
4781098 AGTATCGGTACTACTACTCAAAGTAG
1 AGTATCGGTACTACTACTCTAAGTAG
4781124 TTAAAAAACT
Statistics
Matches: 106, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
95 74 0.70
96 27 0.25
97 5 0.05
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (96 bp):
AGTATCGGTACTACTACTCTAAGTAGCACCGATATCATATATGGTATCGATACCAATTTAACATT
CTGTTTTGACAGTATCGGTAACATAACTCAA
Found at i:4785003 original size:25 final size:25
Alignment explanation
Indices: 4784969--4785018 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
4784959 AAATTAAACT
*
4784969 TACAGTTGTCAACTCCATCGACGAA
1 TACAGTTGTCAACTCCATCAACGAA
4784994 TACAGTTGTCAACTCCATCAACGAA
1 TACAGTTGTCAACTCCATCAACGAA
4785019 ATATGAACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (25 bp):
TACAGTTGTCAACTCCATCAACGAA
Found at i:4785950 original size:29 final size:29
Alignment explanation
Indices: 4785907--4785970 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
4785897 TTGCCAACTA
* ** *
4785907 ATGCACTCCCAGCGACCTCCTAGGTCGCC
1 ATGCACGCCCAGCGACCAACGAGGTCGCC
* *
4785936 ATGCACGCCCGGCGACCAAGGAGGTCGCC
1 ATGCACGCCCAGCGACCAACGAGGTCGCC
4785965 ATGCAC
1 ATGCAC
4785971 TCGGGGCGAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.20, C:0.41, G:0.27, T:0.12
Consensus pattern (29 bp):
ATGCACGCCCAGCGACCAACGAGGTCGCC
Found at i:4785978 original size:29 final size:29
Alignment explanation
Indices: 4785928--4785986 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
4785918 GCGACCTCCT
4785928 AGGTCGCCATGCACGCCCGGCGACCAAGG
1 AGGTCGCCATGCACGCCCGGCGACCAAGG
* **
4785957 AGGTCGCCATGCACTCGGGGCGACCAAGG
1 AGGTCGCCATGCACGCCCGGCGACCAAGG
4785986 A
1 A
4785987 TTCATGCATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.22, C:0.34, G:0.36, T:0.08
Consensus pattern (29 bp):
AGGTCGCCATGCACGCCCGGCGACCAAGG
Found at i:4786238 original size:29 final size:29
Alignment explanation
Indices: 4786203--4786289 Score: 120
Period size: 29 Copynumber: 3.0 Consensus size: 29
4786193 GTTGGCTGGT
*
4786203 AGGTCGCAGGGCATGCATGGCGACCTACC
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
* ***
4786232 AGGTCGCTGGGCGTGCATGGCGACCTGGT
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
*
4786261 AGGTCGCCGGGCGTGCATGGCGACCTACC
1 AGGTCGCAGGGCGTGCATGGCGACCTACC
4786290 CCCGGTACTG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.15, C:0.30, G:0.39, T:0.16
Consensus pattern (29 bp):
AGGTCGCAGGGCGTGCATGGCGACCTACC
Found at i:4795012 original size:6 final size:6
Alignment explanation
Indices: 4795001--4795032 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
4794991 GGAAGATGGC
4795001 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TC
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TC
4795033 GGACTGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.50
Consensus pattern (6 bp):
TCTGAT
Found at i:4799365 original size:25 final size:24
Alignment explanation
Indices: 4799320--4799366 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
4799310 TTATTAATTT
* *
4799320 TATATAAATTTATAAGATTATCGA
1 TATATAAATATATAACATTATCGA
*
4799344 TATATAAAATATATAACTTTATC
1 TATAT-AAATATATAACATTATC
4799367 TCGTCGGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 5 0.26
25 14 0.74
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (24 bp):
TATATAAATATATAACATTATCGA
Found at i:4799565 original size:11 final size:11
Alignment explanation
Indices: 4799549--4799573 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4799539 ATGTTATGTC
4799549 TTTTTTTTCTT
1 TTTTTTTTCTT
4799560 TTTTTTTTCTT
1 TTTTTTTTCTT
4799571 TTT
1 TTT
4799574 CAAAATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:4809664 original size:21 final size:22
Alignment explanation
Indices: 4809635--4809679 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
4809625 AATTTAAATT
4809635 TAAACTATACAAATATAAAAAA
1 TAAACTATACAAATATAAAAAA
* *
4809657 TAAA-TATATAAATATTAAAAA
1 TAAACTATACAAATATAAAAAA
4809678 TA
1 TA
4809680 CAAATTGAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAACTATACAAATATAAAAAA
Found at i:4810032 original size:14 final size:16
Alignment explanation
Indices: 4810015--4810046 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
4810005 TTTAATTCTA
4810015 TAATTTT-TAA-ATTT
1 TAATTTTATAAGATTT
4810029 TAATTTTATAAGATTT
1 TAATTTTATAAGATTT
4810045 TA
1 TA
4810047 TAATATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 3 0.19
16 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TAATTTTATAAGATTT
Found at i:4811626 original size:3 final size:3
Alignment explanation
Indices: 4811618--4811654 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
4811608 TACTTCAGCA
4811618 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
4811655 GAGATTTTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:4811795 original size:15 final size:15
Alignment explanation
Indices: 4811775--4811811 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
4811765 GATTCTGCTG
4811775 CTTCTTCATCATCAT
1 CTTCTTCATCATCAT
* *
4811790 CTTCTTCATCCTCGT
1 CTTCTTCATCATCAT
4811805 CTTCTTC
1 CTTCTTC
4811812 TTCTTCAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.38, G:0.03, T:0.49
Consensus pattern (15 bp):
CTTCTTCATCATCAT
Found at i:4812955 original size:42 final size:42
Alignment explanation
Indices: 4812859--4813249 Score: 350
Period size: 42 Copynumber: 9.4 Consensus size: 42
4812849 AGATCAGTAT
* *
4812859 CTTAGTGACATTTGTTA-TAAAAACGCCGCAATAGAGGC-AA-
1 CTTAGTGGCGTTTGTTACT-AAAACGCCGCAATAGAGGCGAAC
* * * *
4812899 TTTAGTGGCATTTGTTACTAAAATGCTGCAATAGAGGCGAAC
1 CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCGAAC
* * * *
4812941 CTTAGTGGCGTTTGTGACTAAAACGCTGCTATAGA-GCCATAC
1 CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCGA-AC
* * * *
4812983 CTTAGTGGTGTTTGCTA-TAAAAACGTCGCAATAGAGGAGAAC
1 CTTAGTGGCGTTTGTTACT-AAAACGCCGCAATAGAGGCGAAC
* * * *
4813025 CTAAGTGGCGTTTGTGACTAAAATGCCACAATAGAGGC-AA-
1 CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCGAAC
*
4813065 CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCAAAC
1 CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCGAAC
* * *
4813107 CTTAGTGGCGTTTGTGACTAAAACGCCGCTATAGA-GCCATAC
1 CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCGA-AC
* * * * *
4813149 CTTAGTGGCATTTGGTATTAAAACGCCGCAATAGA-TCTGTAC
1 CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGC-GAAC
** * * * ** *
4813191 CTTAGTGGCGTTTGTTGTTGAAACGCCACAGTAGAGATGCAC
1 CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCGAAC
*
4813233 GTTAGTGGCGTTTGTTA
1 CTTAGTGGCGTTTGTTA
4813250 TTACAACACC
Statistics
Matches: 287, Mismatches: 52, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
40 66 0.23
41 14 0.05
42 204 0.71
43 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (42 bp):
CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCGAAC
Found at i:4813069 original size:124 final size:124
Alignment explanation
Indices: 4812859--4813205 Score: 355
Period size: 124 Copynumber: 2.8 Consensus size: 124
4812849 AGATCAGTAT
* * * * * *
4812859 CTTAGTGACATTTGTTATAAAAACGCCGCAATAGAGGCAATTTAGTGGCATTTGTTACTAAAATG
1 CTTAGTGGCGTTTGCTATAAAAACGCCGCAATAGAGGCAACTAAGTGGCATTTGTGACTAAAATG
** * * *
4812924 CTGCAATAGAGGCGAACCTTAGTGGCGTTTGTGACTAAAACGCTGCTATAGAGCCATAC
66 CCACAATAGAGGCGAACCTTAGTGGCGTTTGTGACTAAAACGCCGCAATAGAGCCAAAC
* * * *
4812983 CTTAGTGGTGTTTGCTATAAAAACGTCGCAATAGAGGAGAACCTAAGTGGCGTTTGTGACTAAAA
1 CTTAGTGGCGTTTGCTATAAAAACGCCGCAATAGAGG-CAA-CTAAGTGGCATTTGTGACTAAAA
* *
4813048 TGCCACAATAGAGGC-AA-CTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCAAAC
64 TGCCACAATAGAGGCGAACCTTAGTGGCGTTTGTGACTAAAACGCCGCAATAGAGCCAAAC
* * * *
4813107 CTTAGTGGCGTTTG-TGACT-AAAACGCCGCTATAGAGCCATACCTTAGTGGCATTTG-GTATTA
1 CTTAGTGGCGTTTGCT-A-TAAAAACGCCGCAATAGAGGCA-A-CTAAGTGGCATTTGTG-ACTA
* * * *
4813169 AAACGCCGCAATAGA-TCTGTACCTTAGTGGCGTTTGT
61 AAATGCCACAATAGAGGC-GAACCTTAGTGGCGTTTGT
4813206 TGTTGAAACG
Statistics
Matches: 185, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
123 4 0.02
124 128 0.69
125 6 0.03
126 47 0.25
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (124 bp):
CTTAGTGGCGTTTGCTATAAAAACGCCGCAATAGAGGCAACTAAGTGGCATTTGTGACTAAAATG
CCACAATAGAGGCGAACCTTAGTGGCGTTTGTGACTAAAACGCCGCAATAGAGCCAAAC
Found at i:4813098 original size:166 final size:166
Alignment explanation
Indices: 4812878--4813249 Score: 505
Period size: 166 Copynumber: 2.2 Consensus size: 166
4812868 ATTTGTTATA
* * * * * *
4812878 AAAACGCCGCAATAGAGGCAATTTAGTGGCATTTGTTACTAAAATGCTGCAATAGAGGCGAACCT
1 AAAACGCCACAATAGAGGCAACTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCAAACCT
* **
4812943 TAGTGGCGTTTGTGACTAAAACGCTGCTATAGAGCCATACCTTAGTGGTGTTTGCTATAAAAACG
66 TAGTGGCGTTTGTGACTAAAACGCCGCTATAGAGCCATACCTTAGTGGCATTTGCTATAAAAACG
* *
4813008 TCGCAATAGAGGAGAACCTAAGTGGCGTTTG-TGACT
131 CCGCAATAGAGCAGAACCTAAGTGGCGTTTGTTG-CT
*
4813044 AAAATGCCACAATAGAGGCAACTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCAAACCT
1 AAAACGCCACAATAGAGGCAACTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCAAACCT
* *
4813109 TAGTGGCGTTTGTGACTAAAACGCCGCTATAGAGCCATACCTTAGTGGCATTTGGTATTAAAACG
66 TAGTGGCGTTTGTGACTAAAACGCCGCTATAGAGCCATACCTTAGTGGCATTTGCTATAAAAACG
* * * * *
4813174 CCGCAATAGATCTGTACCTTAGTGGCGTTTGTTGTT
131 CCGCAATAGAGCAGAACCTAAGTGGCGTTTGTTGCT
* *
4813210 GAAACGCCACAGTAGAGATGC-ACGTTAGTGGCGTTTGTTA
1 AAAACGCCACAATAGAG--GCAAC-TTAGTGGCGTTTGTTA
4813250 TTACAACACC
Statistics
Matches: 180, Mismatches: 22, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
166 158 0.88
167 4 0.02
168 18 0.10
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (166 bp):
AAAACGCCACAATAGAGGCAACTTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCAAACCT
TAGTGGCGTTTGTGACTAAAACGCCGCTATAGAGCCATACCTTAGTGGCATTTGCTATAAAAACG
CCGCAATAGAGCAGAACCTAAGTGGCGTTTGTTGCT
Found at i:4813226 original size:84 final size:84
Alignment explanation
Indices: 4812900--4813205 Score: 386
Period size: 84 Copynumber: 3.7 Consensus size: 84
4812890 TAGAGGCAAT
* *
4812900 TTAGTGGCATTTGTTACTAAAATGCTGCAATAGAGGCGAACCTTAGTGGCGTTTGTGACTAAAAC
1 TTAGTGGCATTTGTTACTAAAACGCCGCAATAGAGGCGAACCTTAGTGGCGTTTGTGACTAAAAC
**
4812965 GCTGCTATAGAGCCATACC
66 GCCACTATAGAGCCATACC
** * * * *
4812984 TTAGTGGTGTTTGCTA-TAAAAACGTCGCAATAGAGGAGAACCTAAGTGGCGTTTGTGACTAAAA
1 TTAGTGGCATTTGTTACT-AAAACGCCGCAATAGAGGCGAACCTTAGTGGCGTTTGTGACTAAAA
* * *
4813048 TGCCACAATAGAGGCA-A-C
65 CGCCACTATAGAGCCATACC
* *
4813066 TTAGTGGCGTTTGTTACTAAAACGCCGCAATAGAGGCAAACCTTAGTGGCGTTTGTGACTAAAAC
1 TTAGTGGCATTTGTTACTAAAACGCCGCAATAGAGGCGAACCTTAGTGGCGTTTGTGACTAAAAC
*
4813131 GCCGCTATAGAGCCATACC
66 GCCACTATAGAGCCATACC
* * * *
4813150 TTAGTGGCATTTGGTATTAAAACGCCGCAATAGA-TCTGTACCTTAGTGGCGTTTGT
1 TTAGTGGCATTTGTTACTAAAACGCCGCAATAGAGGC-GAACCTTAGTGGCGTTTGT
4813206 TGTTGAAACG
Statistics
Matches: 188, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
82 69 0.37
83 5 0.03
84 114 0.61
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (84 bp):
TTAGTGGCATTTGTTACTAAAACGCCGCAATAGAGGCGAACCTTAGTGGCGTTTGTGACTAAAAC
GCCACTATAGAGCCATACC
Found at i:4818199 original size:19 final size:19
Alignment explanation
Indices: 4818171--4818215 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
4818161 GAAGCTAAAC
*
4818171 TTGGTAGACCAGTTTTCTA
1 TTGGTGGACCAGTTTTCTA
4818190 TTGGTGGACCAGTTTTCTA
1 TTGGTGGACCAGTTTTCTA
4818209 TTGGTGG
1 TTGGTGG
4818216 GATGTATCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.16, C:0.13, G:0.29, T:0.42
Consensus pattern (19 bp):
TTGGTGGACCAGTTTTCTA
Found at i:4820579 original size:18 final size:18
Alignment explanation
Indices: 4820552--4820592 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
4820542 TATGATCTCA
* *
4820552 TTATCCTTATTATTATTC
1 TTATCATTATTATCATTC
4820570 TTATCATTATTATCATTC
1 TTATCATTATTATCATTC
*
4820588 ATATC
1 TTATC
4820593 TTTTAATCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (18 bp):
TTATCATTATTATCATTC
Found at i:4820871 original size:28 final size:28
Alignment explanation
Indices: 4820831--4820903 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
4820821 ACTTAAAATT
4820831 TGTCCCGAAGGACCACTTATAACACATA
1 TGTCCCGAAGGACCACTTATAACACATA
* *
4820859 TGTCCCGAAGGACAACTTATAACATATA
1 TGTCCCGAAGGACCACTTATAACACATA
* *
4820887 TGTCACGAAGGTCCACT
1 TGTCCCGAAGGACCACT
4820904 CCTTAATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.23
Consensus pattern (28 bp):
TGTCCCGAAGGACCACTTATAACACATA
Found at i:4821329 original size:15 final size:15
Alignment explanation
Indices: 4821309--4821356 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
4821299 AAGAAATAGA
4821309 CTATGTGAAAGTGAT
1 CTATGTGAAAGTGAT
4821324 CTATGT-ATAA--G--
1 CTATGTGA-AAGTGAT
4821335 CTATGTGAAAGTGAT
1 CTATGTGAAAGTGAT
4821350 CTATGTG
1 CTATGTG
4821357 TCTATATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 12
0.69 0.00 0.31
Matches are distributed among these distances:
11 8 0.30
12 1 0.04
13 2 0.07
14 1 0.04
15 15 0.56
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.35
Consensus pattern (15 bp):
CTATGTGAAAGTGAT
Found at i:4821936 original size:4 final size:4
Alignment explanation
Indices: 4821927--4821957 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
4821917 CAAAATTATA
4821927 AATC AATC AATC AATC AATC AATC AATC AAT
1 AATC AATC AATC AATC AATC AATC AATC AAT
4821958 TTCCTTATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
AATC
Found at i:4823369 original size:16 final size:17
Alignment explanation
Indices: 4823344--4823377 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
4823334 TCGAGGTGTC
4823344 ACATTGACTTTT-CAAA
1 ACATTGACTTTTACAAA
*
4823360 ACATTTACTTTTACAAA
1 ACATTGACTTTTACAAA
4823377 A
1 A
4823378 TAATGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (17 bp):
ACATTGACTTTTACAAA
Found at i:4826300 original size:17 final size:18
Alignment explanation
Indices: 4826268--4826301 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4826258 GTCATACTTG
4826268 TTCATTTAATTTTCCTTT
1 TTCATTTAATTTTCCTTT
4826286 TTCATTTAA-TTTCCTT
1 TTCATTTAATTTTCCTT
4826302 ATCTATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.65
Consensus pattern (18 bp):
TTCATTTAATTTTCCTTT
Found at i:4826309 original size:17 final size:18
Alignment explanation
Indices: 4826269--4826310 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
4826259 TCATACTTGT
*
4826269 TCATTTAATTTTCCTTTT
1 TCATTTAATTTTCCTTTC
4826287 TCATTTAA-TTTCCTTATC
1 TCATTTAATTTTCCTT-TC
4826305 T-ATTTA
1 TCATTTA
4826311 TTCCTTCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (18 bp):
TCATTTAATTTTCCTTTC
Found at i:4832284 original size:21 final size:21
Alignment explanation
Indices: 4832260--4832299 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
4832250 ATAAAGCAAA
* *
4832260 AGAAGCAGTGAGAGCAGTAAG
1 AGAAGCAGAGAGAGAAGTAAG
4832281 AGAAGCAGAGAGAGAAGTA
1 AGAAGCAGAGAGAGAAGTA
4832300 TTATTTCAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.38, T:0.07
Consensus pattern (21 bp):
AGAAGCAGAGAGAGAAGTAAG
Found at i:4832938 original size:44 final size:44
Alignment explanation
Indices: 4832888--4832978 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
4832878 TATTGCGACA
*
4832888 TTTGTATTCT-AAAACGCCAC-AATATAACATGACCTTTAGCGGCG
1 TTTGTATACTCAAAA-GCCACTAA-ATAACATGACCTTTAGCGGCG
* * *
4832932 TTTGTATACTCAAAAGCCGCTAAATAACTTGACTTTTAGCGGCG
1 TTTGTATACTCAAAAGCCACTAAATAACATGACCTTTAGCGGCG
4832976 TTT
1 TTT
4832979 ATAAGTAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
44 35 0.85
45 6 0.15
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (44 bp):
TTTGTATACTCAAAAGCCACTAAATAACATGACCTTTAGCGGCG
Found at i:4835218 original size:3 final size:3
Alignment explanation
Indices: 4835210--4835241 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
4835200 CCATTTGAGC
4835210 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
4835242 AAGCTCTGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:4835953 original size:29 final size:29
Alignment explanation
Indices: 4835878--4835953 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 29
4835868 GTCAGGCGAT
* * *
4835878 TTTCCCGATATATCACCGTTGAACAGTATA
1 TTTCCCGATCTAACACCGTTCAACA-TATA
*
4835908 TTTCCCGATC-AGGCACCGTTCAGAC-TATA
1 TTTCCCGATCTA-ACACCGTTCA-ACATATA
4835937 TTTCCCGATCTAACACC
1 TTTCCCGATCTAACACC
4835954 CTTTGCAGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
29 19 0.49
30 18 0.46
31 2 0.05
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (29 bp):
TTTCCCGATCTAACACCGTTCAACATATA
Found at i:4839465 original size:34 final size:33
Alignment explanation
Indices: 4839427--4839493 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 33
4839417 GTAATAAACA
4839427 AAATTAAGCAAAATAAATTAACAA-AAAGTCCAAC
1 AAATTAAGCAAAATAAATTAA-AATAAA-TCCAAC
* *
4839461 AAATTTATCAAAATAAATTAAAATAAATCCAAC
1 AAATTAAGCAAAATAAATTAAAATAAATCCAAC
4839494 CATATTAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 8 0.27
34 22 0.73
ACGTcount: A:0.61, C:0.13, G:0.03, T:0.22
Consensus pattern (33 bp):
AAATTAAGCAAAATAAATTAAAATAAATCCAAC
Found at i:4839550 original size:13 final size:13
Alignment explanation
Indices: 4839532--4839575 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
4839522 ATGATAAATA
4839532 AAAAAAATACAAT
1 AAAAAAATACAAT
* *
4839545 AAAAAAGTCCAAT
1 AAAAAAATACAAT
* *
4839558 AAACAACTACAAT
1 AAAAAAATACAAT
4839571 AAAAA
1 AAAAA
4839576 GTACTAAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.70, C:0.14, G:0.02, T:0.14
Consensus pattern (13 bp):
AAAAAAATACAAT
Done.