Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000761.1 Hibiscus syriacus cultivar Beakdansim tig00001478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5609167
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 23
Found at i:660828 original size:42 final size:42
Alignment explanation
Indices: 660752--660870 Score: 116
Period size: 42 Copynumber: 2.8 Consensus size: 42
660742 GACTCGCCTG
* * * * * * *
660752 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATCCTTGAAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
660794 TCATTCCTTG-AGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCA-TCCTTGAAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* *
660836 TCATCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATCCTTGAAGA-GTCCCCTCCCACCGTTCAAGAG
660871 CCGATTCACA
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
41 5 0.08
42 53 0.83
43 6 0.09
ACGTcount: A:0.23, C:0.35, G:0.18, T:0.24
Consensus pattern (42 bp):
TCATCCTTGAAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:662071 original size:14 final size:14
Alignment explanation
Indices: 662052--662087 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
662042 ATTGTTTAAT
662052 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
662066 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
662080 TGATTTGT
1 TGATTTGT
662088 TTAATTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:662212 original size:19 final size:19
Alignment explanation
Indices: 662188--662291 Score: 128
Period size: 19 Copynumber: 5.7 Consensus size: 19
662178 AAAAACAGAG
*
662188 AATCGCAATGAGAAATGAA
1 AATCGCAATGCGAAATGAA
662207 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
662226 AATAGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
662245 AATCGCAA--CG-AGTG--
1 AATCGCAATGCGAAATGAA
662259 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
662279 AATCGCAACGCGA
1 AATCGCAATGCGA
662292 TTCACTCATT
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
14 8 0.11
16 5 0.07
17 2 0.03
18 3 0.04
19 44 0.60
20 11 0.15
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:662326 original size:19 final size:19
Alignment explanation
Indices: 662298--662424 Score: 100
Period size: 19 Copynumber: 7.3 Consensus size: 19
662288 GCGATTCACT
*
662298 CATTGTGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
*
662317 CATTGCGA--TTC-TCTC-
1 CATTGCGATTTTCATTTCG
*
662332 C-TTGCGA---TAATTTCG
1 CATTGCGATTTTCATTTCG
*
662347 CGTTGCGATTTTCATTTTCG
1 CATTGCGATTTTCA-TTTCG
*
662367 CATTGCGA--TTCA-CTCG
1 CATTGCGATTTTCATTTCG
*
662383 --TTGCGATTTTCTTTTCG
1 CATTGCGATTTTCATTTCG
662400 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
662419 CATTGC
1 CATTGC
662425 TATTCTCTCG
Statistics
Matches: 86, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
13 1 0.01
14 15 0.17
15 2 0.02
16 15 0.17
17 6 0.07
18 4 0.05
19 31 0.36
20 12 0.14
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (19 bp):
CATTGCGATTTTCATTTCG
Found at i:665820 original size:20 final size:19
Alignment explanation
Indices: 665791--666082 Score: 194
Period size: 20 Copynumber: 14.5 Consensus size: 19
665781 GTCAGAATCT
*
665791 CGTTGTGATTTACAGATTCG
1 CGTTGCGATTTAC-GATTCG
*
665811 CATTGCGATTTACGTATTCG
1 CGTTGCGATTTACG-ATTCG
* * *
665831 CATTTCGATTTACGTATTCA
1 CGTTGCGATTTACG-ATTCG
* *
665851 CATTGCGATTTACGGATACG
1 CGTTGCGATTTAC-GATTCG
* *
665871 CATTGCGATTTACGTATTCT
1 CGTTGCGATTTACG-ATTCG
*
665891 CGTTGCGATTTACAGATACG
1 CGTTGCGATTTAC-GATTCG
*
665911 CGTTGCGATTTACGTATTCT
1 CGTTGCGATTTACG-ATTCG
*
665931 CGTTGCGATTTACGGATACG
1 CGTTGCGATTTAC-GATTCG
665951 CGTTGCGATTTTACGTATT-G
1 CGTTGCGA-TTTACG-ATTCG
* * *
665971 TCATTACGATTTACGGATACG
1 -CGTTGCGATTTAC-GATTCG
* *
665992 CGTTGCGATTTTACGGATACT
1 CGTTGCGA-TTTAC-GATTCG
* *
666013 CGTTGCGATAGT-CAGAATCG
1 CGTTGCGAT-TTAC-GATTCG
*
666033 CGTTGCGATTTA-TATGTTCG
1 CGTTGCGATTTACGA--TTCG
* *
666053 CGTTGCGATTTTCATATTCG
1 CGTTGCGATTTAC-GATTCG
666073 CGTTGCGATT
1 CGTTGCGATT
666083 ATGGAAAATC
Statistics
Matches: 222, Mismatches: 32, Indels: 36
0.77 0.11 0.12
Matches are distributed among these distances:
18 1 0.00
19 4 0.02
20 177 0.80
21 38 0.17
22 2 0.01
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (19 bp):
CGTTGCGATTTACGATTCG
Found at i:665841 original size:40 final size:39
Alignment explanation
Indices: 665797--666021 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 39
665787 ATCTCGTTGT
* * *
665797 GATTTACAG-ATTCGCATTGCGATTTACGTATTCGCATTTC
1 GATTTAC-GTATTCTCATTGCGATTTACG-ATACGCATTGC
*
665837 GATTTACGTATTCACATTGCGATTTACGGATACGCATTGC
1 GATTTACGTATTCTCATTGCGATTTAC-GATACGCATTGC
* *
665877 GATTTACGTATTCTCGTTGCGATTTACAGATACGCGTTGC
1 GATTTACGTATTCTCATTGCGATTTAC-GATACGCATTGC
* *
665917 GATTTACGTATTCTCGTTGCGATTTACGGATACGCGTTGC
1 GATTTACGTATTCTCATTGCGATTTAC-GATACGCATTGC
* * *
665957 GATTTTACGTATTGTCATTACGATTTACGGATACGCGTTGC
1 GA-TTTACGTATTCTCATTGCGATTTAC-GATACGCATTGC
* * *
665998 GATTTTACGGATACTCGTTGCGAT
1 GA-TTTACGTATTCTCATTGCGAT
666022 AGTCAGAATC
Statistics
Matches: 166, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 110 0.66
41 55 0.33
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (39 bp):
GATTTACGTATTCTCATTGCGATTTACGATACGCATTGC
Found at i:665874 original size:60 final size:60
Alignment explanation
Indices: 665797--666021 Score: 227
Period size: 60 Copynumber: 3.7 Consensus size: 60
665787 ATCTCGTTGT
* * * *
665797 GATTTACAGATTCGCATTGCGATTTACGTATTCGCATTTCGATTTACGTATTCACATTGC
1 GATTTACGGATACGCATTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCACATTGC
* * * *
665857 GATTTACGGATACGCATTGCGATTTACGTATTCTCGTTGCGATTTACAG-ATACGCGTTGC
1 GATTTACGGATACGCATTGCGATTTACGTATTCGCGTTGCGATTTAC-GTATTCACATTGC
* * * * * * ** *
665917 GATTTACGTATTCTCGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGTCATTAC
1 GATTTACGGATACGCATTGCGATTTACGTATTCGCGTTGCGA-TTTACGTATTCACATTGC
* * * *
665978 GATTTACGGATACGCGTTGCGATTTTACGGATACTCGTTGCGAT
1 GATTTACGGATACGCATTGCGA-TTTACGTATTCGCGTTGCGAT
666022 AGTCAGAATC
Statistics
Matches: 137, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
60 86 0.63
61 32 0.23
62 19 0.14
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (60 bp):
GATTTACGGATACGCATTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCACATTGC
Found at i:666181 original size:20 final size:20
Alignment explanation
Indices: 666131--666185 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
666121 GATTCTTCAT
666131 AATCGCGTTGCGATTCTGGG
1 AATCGCGTTGCGATTCTGGG
* **
666151 AATTGATTTGCGATTCT-GG
1 AATCGCGTTGCGATTCTGGG
666170 AGATCGCGTTGCGATT
1 A-ATCGCGTTGCGATT
666186 TTTATTTCGC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.18, C:0.16, G:0.31, T:0.35
Consensus pattern (20 bp):
AATCGCGTTGCGATTCTGGG
Found at i:666509 original size:21 final size:21
Alignment explanation
Indices: 666485--666565 Score: 110
Period size: 21 Copynumber: 3.8 Consensus size: 21
666475 AGTATAATTG
666485 CTAAATAAATTAAAATAATAA
1 CTAAATAAATTAAAATAATAA
*
666506 CTAAATAAATTAAAAAAATAA
1 CTAAATAAATTAAAATAATAA
666527 CTAAATAAATT-AAATAATAA
1 CTAAATAAATTAAAATAATAA
* *
666547 GTATATGAAATATAAAATA
1 CTAAAT-AAAT-TAAAATA
666566 GTTAGTAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
20 12 0.23
21 35 0.66
22 1 0.02
23 5 0.09
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.28
Consensus pattern (21 bp):
CTAAATAAATTAAAATAATAA
Found at i:666653 original size:21 final size:20
Alignment explanation
Indices: 666627--666667 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
666617 ACCTAAACAT
666627 ATAATAACTAAACAAATTAAA
1 ATAATAACTAAAC-AATTAAA
**
666648 ATAATAGTTAAACAATTAAA
1 ATAATAACTAAACAATTAAA
666668 TATTAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.27
Consensus pattern (20 bp):
ATAATAACTAAACAATTAAA
Found at i:668414 original size:19 final size:20
Alignment explanation
Indices: 668386--668440 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
668376 ACACACAAAA
*
668386 TAATATTATTTTATTTA-TT
1 TAATAATATTTTATTTATTT
* *
668405 TAATAATATTATA-ATATTT
1 TAATAATATTTTATTTATTT
668424 TAATAATATTTTATTTA
1 TAATAATATTTTATTTA
668441 AACTATTGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 2 0.07
19 25 0.86
20 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TAATAATATTTTATTTATTT
Found at i:668541 original size:22 final size:23
Alignment explanation
Indices: 668503--668556 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
668493 CAATAATATT
*
668503 TTAAT-TAATATTATTAAATAA-A
1 TTAATATAATACTATTAAA-AATA
668525 TTAATATAATACT-TTAAAAATA
1 TTAATATAATACTATTAAAAATA
*
668547 ATAATATAAT
1 TTAATATAAT
668557 TTTTTTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 20 0.71
23 6 0.21
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TTAATATAATACTATTAAAAATA
Found at i:671512 original size:2 final size:2
Alignment explanation
Indices: 671505--671557 Score: 70
Period size: 2 Copynumber: 26.5 Consensus size: 2
671495 ATAAAATTTA
* *
671505 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
671547 GT AT AT GT AT A
1 AT AT AT AT AT A
671558 ATGTTATATC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (2 bp):
AT
Found at i:671759 original size:14 final size:13
Alignment explanation
Indices: 671726--671750 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
671716 ATTTAAGGCT
671726 ATAAAAAATTTTA
1 ATAAAAAATTTTA
671739 ATAAAAAATTTT
1 ATAAAAAATTTT
671751 TATCAAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAAAAAATTTTA
Found at i:679786 original size:27 final size:28
Alignment explanation
Indices: 679748--679812 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
679738 GAATACTTCC
679748 TACATAATTTCCA-CCCCTATATAATTT
1 TACATAATTTCCACCCCCTATATAATTT
679775 TACATAATTTCCACCCCCTATATAATTT
1 TACATAATTTCCACCCCCTATATAATTT
*
679803 TCCATAATTT
1 TACATAATTT
679813 TTGTCATCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 13 0.36
28 23 0.64
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (28 bp):
TACATAATTTCCACCCCCTATATAATTT
Found at i:680977 original size:14 final size:14
Alignment explanation
Indices: 680958--680985 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
680948 AAAATTCATC
680958 CTCGAATTTTCCAT
1 CTCGAATTTTCCAT
680972 CTCGAATTTTCCAT
1 CTCGAATTTTCCAT
680986 ACGTACTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (14 bp):
CTCGAATTTTCCAT
Found at i:684787 original size:21 final size:22
Alignment explanation
Indices: 684749--684789 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
684739 ACCCGAAATA
*
684749 ACATTTATGATAAACATCATAT
1 ACATTCATGATAAACATCATAT
684771 ACATTCATGAT-AACATCAT
1 ACATTCATGATAAACATCAT
684790 GTGTAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (22 bp):
ACATTCATGATAAACATCATAT
Found at i:687683 original size:21 final size:22
Alignment explanation
Indices: 687645--687685 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
687635 ACCCGAAATA
*
687645 ACATTTATGATAAACATCATAT
1 ACATTCATGATAAACATCATAT
687667 ACATTCATGAT-AACATCAT
1 ACATTCATGATAAACATCAT
687686 GTGTAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (22 bp):
ACATTCATGATAAACATCATAT
Found at i:705562 original size:42 final size:43
Alignment explanation
Indices: 705452--705766 Score: 215
Period size: 42 Copynumber: 7.4 Consensus size: 43
705442 GTTTGAGAAC
* *
705452 AAAAAACGCAGCAATAAG-TCAAGATCTATCGCGGCATTTT-TGG
1 AAAAAACGCCGCAA-AAGCTC-AGATCTATAGCGGCATTTTCTGG
* * *
705495 AAAAAACGTCGTAAAAAG-TCGATATCTATAGC-G-ATGTTTCTGG
1 AAAAAACGCCG-CAAAAGCTC-AGATCTATAGCGGCAT-TTTCTGG
* *
705538 AAAAAACGCCGCAAAAGCTCATATCTATAGCAGG-GTTTTCAT--
1 AAAAAACGCCGCAAAAGCTCAGATCTATAGC-GGCATTTTC-TGG
* * * *
705580 AAGAAACTCCGCAAAAGGTCAGATCTATAGCGGCATTTTC-AG
1 AAAAAACGCCGCAAAAGCTCAGATCTATAGCGGCATTTTCTGG
* * *
705622 AAGAAACGTCGCAAAAGGTCAGATCTATAGCGGCATTTT-TGG
1 AAAAAACGCCGCAAAAGCTCAGATCTATAGCGGCATTTTCTGG
* * * *
705664 AACAAACGCCGCAAAAGCTCAAATCTATAGCAGCGTTTT-TGG
1 AAAAAACGCCGCAAAAGCTCAGATCTATAGCGGCATTTTCTGG
* * * ** * *
705706 ATACAAACACCGTAAAATG-TCATCTCTATAGCTGCATTTT-TTG
1 A-AAAAACGCCGCAAAA-GCTCAGATCTATAGCGGCATTTTCTGG
*
705749 ATATAAACGCCGCAAAAG
1 A-AAAAACGCCGCAAAAG
705767 ATCTCGTTAT
Statistics
Matches: 226, Mismatches: 33, Indels: 27
0.79 0.12 0.09
Matches are distributed among these distances:
41 4 0.02
42 128 0.57
43 88 0.39
44 6 0.03
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (43 bp):
AAAAAACGCCGCAAAAGCTCAGATCTATAGCGGCATTTTCTGG
Found at i:705676 original size:84 final size:83
Alignment explanation
Indices: 705452--705766 Score: 240
Period size: 84 Copynumber: 3.7 Consensus size: 83
705442 GTTTGAGAAC
* * * * *
705452 AAAAAACGCAGCAATAA-GTCAAGATCTATCGCGGCATTTTTGGAAAAAACGTCGTAAAAAGTCG
1 AAAAAACGCCGCAA-AAGGTC-AGATCTATAGCGGCATTTTTGGAAAAAACGCCGCAAAAGGTC-
*
705516 ATATCTATAGCG-ATGTTTCTGG
63 AAATCTATAGCGCAT-TTTC-GG
* * * *** * * *
705538 AAAAAACGCCGCAAAAGCTCATATCTATAGCAGG-GTTTTCATAAGAAACTCCGCAAAAGGTCAG
1 AAAAAACGCCGCAAAAGGTCAGATCTATAGC-GGCATTTTTGGAAAAAACGCCGCAAAAGGTCAA
*
705602 ATCTATAGCGGCATTTTCAG
65 ATCTATAGC-GCATTTTCGG
* * * *
705622 AAGAAACGTCGCAAAAGGTCAGATCTATAGCGGCATTTTTGGAACAAACGCCGCAAAAGCTCAAA
1 AAAAAACGCCGCAAAAGGTCAGATCTATAGCGGCATTTTTGGAAAAAACGCCGCAAAAGGTCAAA
* *
705687 TCTATAGCAGCGTTTTTGG
66 TCTATAGC-GCATTTTCGG
* * * * ** * * *
705706 ATACAAACACCGTAAAATGTCATCTCTATAGCTGCATTTTTTGATATAAACGCCGCAAAAG
1 A-AAAAACGCCGCAAAAGGTCAGATCTATAGCGGCATTTTTGGA-AAAAACGCCGCAAAAG
705767 ATCTCGTTAT
Statistics
Matches: 181, Mismatches: 41, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
83 2 0.01
84 77 0.43
85 68 0.38
86 34 0.19
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (83 bp):
AAAAAACGCCGCAAAAGGTCAGATCTATAGCGGCATTTTTGGAAAAAACGCCGCAAAAGGTCAAA
TCTATAGCGCATTTTCGG
Found at i:705702 original size:126 final size:127
Alignment explanation
Indices: 705473--705702 Score: 331
Period size: 126 Copynumber: 1.8 Consensus size: 127
705463 CAATAAGTCA
* ** * *
705473 AGATCTATCGCGGCATTTTTGGAAAAAACGTCGTAAAAAGTCGATATCTATAGCGATGTTTCTGG
1 AGATCTATAGCGGCATTTTCAGAAAAAACGTCGCAAAAAGTCGAGATCTATAGCGATGTTTCTGG
* *
705538 AAAAAACGCCGCAAAAGCTCATATCTATAGCAGGGTTTTCATAAGAAACTCCGCAAAAGGTC
66 AAAAAACGCCGCAAAAGCTCAAATCTATAGCAGCGTTTTCATAAGAAACTCCGCAAAAGGTC
* *
705600 AGATCTATAGCGGCATTTTCAGAAGAAACGTCGCAAAAGGTC-AGATCTATAGCGGCAT-TTT-T
1 AGATCTATAGCGGCATTTTCAGAAAAAACGTCGCAAAAAGTCGAGATCTATAGC-G-ATGTTTCT
*
705662 GGAACAAACGCCGCAAAAGCTCAAATCTATAGCAGCGTTTT
64 GGAAAAAACGCCGCAAAAGCTCAAATCTATAGCAGCGTTTT
705703 TGGATACAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
126 49 0.54
127 40 0.44
128 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (127 bp):
AGATCTATAGCGGCATTTTCAGAAAAAACGTCGCAAAAAGTCGAGATCTATAGCGATGTTTCTGG
AAAAAACGCCGCAAAAGCTCAAATCTATAGCAGCGTTTTCATAAGAAACTCCGCAAAAGGTC
Found at i:708166 original size:21 final size:21
Alignment explanation
Indices: 708140--708180 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
708130 TGCACAGTTG
708140 TATACTTGTTGTCGATTCCAA
1 TATACTTGTTGTCGATTCCAA
*
708161 TATACTTGTTTTCGATTCCA
1 TATACTTGTTGTCGATTCCA
708181 GATGTTCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (21 bp):
TATACTTGTTGTCGATTCCAA
Found at i:708314 original size:35 final size:35
Alignment explanation
Indices: 708268--708339 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
708258 ATCACTGCAT
708268 CAAACCTTGCACCATAATATAAGCCTCAAATATTG
1 CAAACCTTGCACCATAATATAAGCCTCAAATATTG
708303 CAAACCTTGCACCATAATATAAGCCTCAAATATTG
1 CAAACCTTGCACCATAATATAAGCCTCAAATATTG
708338 CA
1 CA
708340 TGGTGAAGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.26, G:0.08, T:0.25
Consensus pattern (35 bp):
CAAACCTTGCACCATAATATAAGCCTCAAATATTG
Found at i:710766 original size:40 final size:41
Alignment explanation
Indices: 710593--710814 Score: 279
Period size: 41 Copynumber: 5.5 Consensus size: 41
710583 AGTCTTTAGC
* *
710593 TTAGCGGTGTTTGTATAAAAACGCCAATAAAGTACGAGTAT
1 TTAGCGGCGTTTGTATAAAAACGCCAATAAAGTACGAGTCT
710634 TTAGCGGCGTTTGTATAAAAACGCCAATAAAGTACGAGTCT
1 TTAGCGGCGTTTGTATAAAAACGCCAATAAAGTACGAGTCT
* * * *
710675 ATAGCTGG-GTTTTTACAAAAACGCCACTAAAGTACGAGTCT
1 TTAGC-GGCGTTTGTATAAAAACGCCAATAAAGTACGAGTCT
* * ** * *
710716 ATAGCGGCGTTTGTCTAAAAACATCACTAAAGTA-TAGTCT
1 TTAGCGGCGTTTGTATAAAAACGCCAATAAAGTACGAGTCT
* *
710756 TTAGCGGCGTTTTTATACAAACGCCAATAAAGTAC-AGTCT
1 TTAGCGGCGTTTGTATAAAAACGCCAATAAAGTACGAGTCT
*
710796 TTAGCGGCGTTTGTTTAAA
1 TTAGCGGCGTTTGTATAAA
710815 GCGCCGCTAT
Statistics
Matches: 156, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
40 55 0.35
41 99 0.63
42 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (41 bp):
TTAGCGGCGTTTGTATAAAAACGCCAATAAAGTACGAGTCT
Found at i:711353 original size:22 final size:22
Alignment explanation
Indices: 711328--711420 Score: 84
Period size: 22 Copynumber: 4.2 Consensus size: 22
711318 CCACAGCTCG
711328 TAATTTGCACCGAAGTGCCACA
1 TAATTTGCACCGAAGTGCCACA
711350 TAATTAT-C-CCGAAG-GACCACA
1 TAATT-TGCACCGAAGTG-CCACA
** *
711371 TAGGTTGCACTGAAGTGCCACA
1 TAATTTGCACCGAAGTGCCACA
* * *
711393 TAGGTTTCCACCGAAGTGCCATA
1 TA-ATTTGCACCGAAGTGCCACA
711416 TAATT
1 TAATT
711421 ATCCCGAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
20 2 0.04
21 15 0.26
22 20 0.35
23 20 0.35
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (22 bp):
TAATTTGCACCGAAGTGCCACA
Found at i:717663 original size:21 final size:21
Alignment explanation
Indices: 717547--717726 Score: 69
Period size: 21 Copynumber: 8.2 Consensus size: 21
717537 TTTTGCATTT
* *
717547 CATTTATGGCATCCTTTCATG
1 CATTTAAGGCATCCTTACATG
* * *
717568 CCTTTAATGCA-CCATTATGCATTT
1 CATTTAAGGCATCC-TTA--CA-TG
* *
717592 CATTTATGGCATCCTTTCATG
1 CATTTAAGGCATCCTTACATG
* * * *
717613 CCTTTAATGCATCGTTATGCATTT
1 CATTTAAGGCATCCTTA--CA-TG
*
717637 CATTTAGGGCATCCTTACATG
1 CATTTAAGGCATCCTTACATG
* * *
717658 CATTTAAAGCATCGTTACGCATTT
1 CATTTAAGGCATCCTTA--CA-TG
* *
717682 CATTTATGGCATCCTTTCATG
1 CATTTAAGGCATCCTTACATG
* * *
717703 CCTTTAATGCACCCTT--ATG
1 CATTTAAGGCATCCTTACATG
717722 CATTT
1 CATTT
717727 TATTTATGAC
Statistics
Matches: 113, Mismatches: 35, Indels: 24
0.66 0.20 0.14
Matches are distributed among these distances:
19 7 0.06
20 2 0.02
21 51 0.45
22 6 0.05
23 6 0.05
24 39 0.35
25 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (21 bp):
CATTTAAGGCATCCTTACATG
Found at i:717891 original size:45 final size:45
Alignment explanation
Indices: 717454--717890 Score: 658
Period size: 45 Copynumber: 9.7 Consensus size: 45
717444 ATTCATTATT
* *
717454 TTTCATTTAAGGCATCATTTCATGCCTTTAATGCACCGTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
* * *
717499 TTTCATTTATAGCATCCTTTCATGCCTTTAATGCACCATTTTGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
*
717544 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCATTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
*
717589 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCATCGTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
* * * * * *
717634 TTTCATTTAGGGCATCCTTACATGCATTTAAAGCATCGTTACGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
*
717679 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCCTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
* *
717724 TTTTATTTATGACATCCTTTCATGCCTTTAATGCACCGTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
* ** *
717769 TTTTATTTATGGCATCCTTTCATGCCTTTAATGCACTATTATTCA
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
* * *
717814 TTTCATTTATGACATCCTTTCATGCCTTTAATCCACTGTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
*
717859 TTTCATTTATGGCATCATTTCATGCCTTTAAT
1 TTTCATTTATGGCATCCTTTCATGCCTTTAAT
717891 CTCAGTTCAG
Statistics
Matches: 357, Mismatches: 35, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 357 1.00
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.43
Consensus pattern (45 bp):
TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCA
Found at i:721598 original size:32 final size:33
Alignment explanation
Indices: 721532--721599 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
721522 TAAAATAAAT
721532 AAATAAATAAATATTAATAAAATATTTATCTTA
1 AAATAAATAAATATTAATAAAATATTTATCTTA
* *
721565 AAAT-AATAAAATATTAGTAAATTATTTAT-TTA
1 AAATAAAT-AAATATTAATAAAATATTTATCTTA
721597 AAA
1 AAA
721600 AGATCAGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 9 0.28
33 23 0.72
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (33 bp):
AAATAAATAAATATTAATAAAATATTTATCTTA
Found at i:723250 original size:3 final size:3
Alignment explanation
Indices: 723244--723309 Score: 64
Period size: 3 Copynumber: 22.3 Consensus size: 3
723234 AATAATTATT
* * *
723244 TAA TAA TAA T-A TAA T-A TATA TAA TAA GAA TAA TAT TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
**
723288 TAA TAA TAA TTT TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
723310 TAAGTAAAAT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
2 4 0.08
3 43 0.86
4 3 0.06
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:723303 original size:18 final size:19
Alignment explanation
Indices: 723233--723309 Score: 90
Period size: 18 Copynumber: 4.2 Consensus size: 19
723223 TCTGGCCTTG
*
723233 TAATAATTATTTAATAATAA
1 TAATAATAATTT-ATAATAA
*
723253 T-ATAAT-ATATATAATAA
1 TAATAATAATTTATAATAA
*
723270 GAATAAT-ATTTATAATAA
1 TAATAATAATTTATAATAA
723288 TAATAATAATTT-TAATAA
1 TAATAATAATTTATAATAA
723306 TAAT
1 TAAT
723310 TAAGTAAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
17 7 0.14
18 34 0.67
19 9 0.18
20 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (19 bp):
TAATAATAATTTATAATAA
Found at i:723476 original size:45 final size:45
Alignment explanation
Indices: 723425--723593 Score: 293
Period size: 45 Copynumber: 3.8 Consensus size: 45
723415 GATGGAAATG
* *
723425 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGGAGGT
1 TTTGAAAACATCAAGCACTGAAGGGCTTACAGATGACCCGAAGGT
*
723470 TTTGAAAACATCAAGCACTAAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCAAGCACTGAAGGGCTTACAGATGACCCGAAGGT
*
723515 TTTGAAAACATCAAGAACTGAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCAAGCACTGAAGGGCTTACAGATGACCCGAAGGT
*
723560 TTTGAAAACATCAAGCACTGAAGGACTTACAGAT
1 TTTGAAAACATCAAGCACTGAAGGGCTTACAGAT
723594 ATGGGAAATA
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 117 1.00
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (45 bp):
TTTGAAAACATCAAGCACTGAAGGGCTTACAGATGACCCGAAGGT
Found at i:723883 original size:73 final size:73
Alignment explanation
Indices: 723763--724557 Score: 1403
Period size: 73 Copynumber: 10.9 Consensus size: 73
723753 AACTCGAAAT
* * * *
723763 AACTGTCTTAAGCGAGATAAATCTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGT
1 AACTGTCTCAAGCGAGACAAAT-TTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGT
*
723828 TTCAAGTGA
65 TTCGAGTGA
* * *
723837 AACTGTCTCAAGAGAGACAAAATTTGTTTTAAGAAAAATAATCTCAAGTGAGATAAAGTTCTGTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
723902 TCGAGTGA
66 TCGAGTGA
723910 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
723975 TCGAGTGA
66 TCGAGTGA
723983 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
724048 TCGAGTGA
66 TCGAGTGA
*
724056 AACTGTCTCAAACGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
724121 TCGAGTGA
66 TCGAGTGA
* * *
724129 AACTGTCTCAAGAGAGATAAATTTTAG-TTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCAGT
1 AACTGTCTCAAGCGAGACAAATTTT-GTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGT
724193 TTCGAGTGA
65 TTCGAGTGA
* *
724202 AACTCTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACACTCTCAAGTGAGATAAAGTTCTGTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
724267 TCGAGTGA
66 TCGAGTGA
*
724275 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAGGTGAGATAAAGTTCTGTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
724340 TCGAGTGA
66 TCGAGTGA
724348 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
724413 TCGAGTGA
66 TCGAGTGA
* *
724421 AACTGTCTCAAGAGAGACAAATTTTGTTTTAAGAATAACAATCTCAAGTGAGATAAAGTTCTGTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
724486 TCGAGTGA
66 TCGAGTGA
*
724494 AACTGTCTCAAGCGAGAAAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGT
724558 GAAAACATCC
Statistics
Matches: 689, Mismatches: 30, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
72 1 0.00
73 669 0.97
74 19 0.03
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (73 bp):
AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGTT
TCGAGTGA
Found at i:724843 original size:165 final size:165
Alignment explanation
Indices: 724592--724916 Score: 526
Period size: 165 Copynumber: 2.0 Consensus size: 165
724582 TATGGATGTG
* * * *
724592 GGAAATAGTTTACTAAGTAAGATACTATGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTC
1 GGAAATAGTTTACTAAGTAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTTC
** *
724657 AGAAAAGATTGAATTAGAAACTATGAAAATCGTTTTCTCATTATTTTTCAAAATAACATGTTGAT
66 AGAAAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTATTTTTCAAAATAACATGTTGAT
*
724722 TGGGTAACATGCCCCAATCTCAACATAATGTTGTT
131 TGGGTAACATGACCCAATCTCAACATAATGTTGTT
724757 GGAAATAGTTTACTAAGTAAAAAAGCTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTT
1 GGAAATAGTTTACTAAGTAAAAAA-CTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTT
* * *
724822 -TGAAAAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCAAAATATCATGTTGA
65 CAGAAAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTATTTTTCAAAATAACATGTTGA
*
724886 TTGGGTAACATGACCCAATCTCAAGATAATG
130 TTGGGTAACATGACCCAATCTCAACATAATG
724917 CTCATTCTTG
Statistics
Matches: 147, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
165 109 0.74
166 38 0.26
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (165 bp):
GGAAATAGTTTACTAAGTAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTTC
AGAAAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTATTTTTCAAAATAACATGTTGAT
TGGGTAACATGACCCAATCTCAACATAATGTTGTT
Found at i:725457 original size:22 final size:22
Alignment explanation
Indices: 725432--725486 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
725422 AATAAAGCTT
725432 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
725454 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
725476 TCATCTTTGAA
1 TCATCTTTGAA
725487 GAGTGTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:729467 original size:11 final size:11
Alignment explanation
Indices: 729453--729513 Score: 56
Period size: 11 Copynumber: 5.5 Consensus size: 11
729443 CTTGATTCAA
729453 TTTTCCTTTTT
1 TTTTCCTTTTT
729464 TTTTCCTTTTT
1 TTTTCCTTTTT
729475 TTCTT--TTTTT
1 TT-TTCCTTTTT
729485 TCTTT-CTTTCTT
1 T-TTTCCTTT-TT
*
729497 TTTTCTTTCTTT
1 TTTTCCTT-TTT
729509 TTTTC
1 TTTTC
729514 TTCTTCCTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
10 8 0.19
11 20 0.47
12 14 0.33
13 1 0.02
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTCCTTTTT
Found at i:729473 original size:9 final size:9
Alignment explanation
Indices: 729461--729513 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
729451 AATTTTCCTT
729461 TTTTTTTCC
1 TTTTTTTCC
729470 TTTTTTT-C
1 TTTTTTTCC
*
729478 TTTTTTTTC
1 TTTTTTTCC
* *
729487 TTTCTTTCT
1 TTTTTTTCC
*
729496 TTTTTCTTTC
1 TTTTT-TTCC
729506 TTTTTTTC
1 TTTTTTTC
729514 TTCTTCCTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
8 8 0.23
9 20 0.57
10 7 0.20
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTCC
Found at i:729480 original size:19 final size:18
Alignment explanation
Indices: 729453--729515 Score: 83
Period size: 19 Copynumber: 3.4 Consensus size: 18
729443 CTTGATTCAA
*
729453 TTTTCCTTTTTTTTTCCTT
1 TTTTTCTTTTTTTTT-CTT
729472 TTTTTC-TTTTTTTTCTT
1 TTTTTCTTTTTTTTTCTT
*
729489 TCTTTCTTTTTTCTTTCTT
1 TTTTTCTTTTTT-TTTCTT
729508 TTTTTCTT
1 TTTTTCTT
729516 CTTCCTTCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
17 8 0.21
18 13 0.33
19 18 0.46
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTCTTTTTTTTTCTT
Found at i:729509 original size:36 final size:36
Alignment explanation
Indices: 729458--729533 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
729448 TTCAATTTTC
**
729458 CTTTTTTTTTCCTTTTTTTCTT-TTTTTTCTTTCTTT
1 CTTTTTTTTTCCTTTTTTTCTTCTTCCTTC-TTCTTT
729494 CTTTTTTCTTT-CTTTTTTTCTTCTTCCTTCTTCTTT
1 CTTTTTT-TTTCCTTTTTTTCTTCTTCCTTCTTCTTT
729530 CTTT
1 CTTT
729534 GCTGGATAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
36 28 0.78
37 8 0.22
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (36 bp):
CTTTTTTTTTCCTTTTTTTCTTCTTCCTTCTTCTTT
Found at i:729513 original size:8 final size:8
Alignment explanation
Indices: 729461--729518 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
729451 AATTTTCCTT
729461 TTTTTTTCC
1 TTTTTTT-C
729470 TTTTTTTC
1 TTTTTTTC
729478 TTTTTTTTC
1 -TTTTTTTC
*
729487 TTTCTTTC
1 TTTTTTTC
729495 -TTTTTTC
1 TTTTTTTC
*
729502 TTTCTTT-
1 TTTTTTTC
*
729509 TTTTCTTC
1 TTTTTTTC
729517 TT
1 TT
729519 CCTTCTTCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
7 11 0.27
8 15 0.37
9 15 0.37
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTTTC
Found at i:729531 original size:4 final size:4
Alignment explanation
Indices: 729469--729533 Score: 57
Period size: 4 Copynumber: 17.0 Consensus size: 4
729459 TTTTTTTTTC
* * *
729469 CTTT TTTT CTTTT TTTT CTTT CTTT CTTT -TTT CTTT CTTT TTTT C-TT
1 CTTT CTTT C-TTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
*
729516 C-TT CCTT C-TT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT
729534 GCTGGATAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
3 12 0.24
4 36 0.71
5 3 0.06
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
CTTT
Found at i:735782 original size:15 final size:15
Alignment explanation
Indices: 735764--735813 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
735754 AATATTGCAA
735764 ATAAAAATAAATTAT
1 ATAAAAATAAATTAT
* *
735779 ATAAAAATATAGTAT
1 ATAAAAATAAATTAT
735794 -TAAAATATAAATTAT
1 ATAAAA-ATAAATTAT
*
735809 CTAAA
1 ATAAA
735814 TTAATGAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 5 0.17
15 20 0.69
16 4 0.14
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (15 bp):
ATAAAAATAAATTAT
Found at i:737110 original size:3 final size:3
Alignment explanation
Indices: 737104--737173 Score: 88
Period size: 3 Copynumber: 23.3 Consensus size: 3
737094 AATAATTATT
* *
737104 TAA TAA TAA T-A TAA TATA TAA TAA TAA TAA TAA TAA TAT TTA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
**
737149 TAA TAA TAA TAA TTT TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
737174 TAAGTAAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
2 2 0.04
3 52 0.91
4 3 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:737130 original size:21 final size:21
Alignment explanation
Indices: 737093--737173 Score: 107
Period size: 21 Copynumber: 4.0 Consensus size: 21
737083 TCTGGGCTTG
*
737093 TAATAATTAT-TTAATAATAA
1 TAATAATAATATTAATAATAA
737113 T-ATAAT-ATA-TAATAATAA
1 TAATAATAATATTAATAATAA
*
737131 TAATAATAATATTTATAATAA
1 TAATAATAATATTAATAATAA
*
737152 TAATAATAATTTTAATAATAA
1 TAATAATAATATTAATAATAA
737173 T
1 T
737174 TAAGTAAAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
18 12 0.22
19 10 0.19
20 4 0.07
21 28 0.52
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TAATAATAATATTAATAATAA
Found at i:742314 original size:90 final size:90
Alignment explanation
Indices: 742161--742338 Score: 295
Period size: 90 Copynumber: 2.0 Consensus size: 90
742151 CCTAACACAC
* *
742161 CCTTTTATAGTCAAGTTACCCTAATCATATTAGGGTTTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGTCAAGTTACCCTAATCATAATAGGGATTTTATTATTTCAAATTAATTAAATCTAT
* *
742226 ATTTAATTAATTGTAATTTAATAAT
66 ATTTAATTAATTGAAATTAAATAAT
*
742251 CCTTTTATA-TCCAAGTTACCCTGATCATAATAGGGATTTTATTATTTCAAATTAATTAAATCTA
1 CCTTTTATAGT-CAAGTTACCCTAATCATAATAGGGATTTTATTATTTCAAATTAATTAAATCTA
742315 TATTTAATTAATTGAAATTAAATA
65 TATTTAATTAATTGAAATTAAATA
742339 TTCGGGATTA
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
89 1 0.01
90 81 0.99
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.46
Consensus pattern (90 bp):
CCTTTTATAGTCAAGTTACCCTAATCATAATAGGGATTTTATTATTTCAAATTAATTAAATCTAT
ATTTAATTAATTGAAATTAAATAAT
Found at i:745450 original size:23 final size:23
Alignment explanation
Indices: 745420--745471 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
745410 TACATTCGTA
745420 TACATTATATGTGGCACTACATG
1 TACATTATATGTGGCACTACATG
*
745443 TACATTATATGTGGCACTATATG
1 TACATTATATGTGGCACTACATG
*
745466 TGCATT
1 TACATT
745472 TGGGAGTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (23 bp):
TACATTATATGTGGCACTACATG
Found at i:745465 original size:12 final size:12
Alignment explanation
Indices: 745425--745467 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
745415 TCGTATACAT
745425 TATATGTGGCAC
1 TATATGTGGCAC
* * *
745437 TACATGT-ACAT
1 TATATGTGGCAC
745448 TATATGTGGCAC
1 TATATGTGGCAC
745460 TATATGTG
1 TATATGTG
745468 CATTTGGGAG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (12 bp):
TATATGTGGCAC
Found at i:748576 original size:28 final size:28
Alignment explanation
Indices: 748536--748594 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
748526 TACGTGAAAA
748536 AGAAAGATGGATATATGCAATTACACAT
1 AGAAAGATGGATATATGCAATTACACAT
*
748564 AGAAAGATGGATATATGCAATTACATAT
1 AGAAAGATGGATATATGCAATTACACAT
748592 AGA
1 AGA
748595 TTACCGCCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.25
Consensus pattern (28 bp):
AGAAAGATGGATATATGCAATTACACAT
Found at i:750637 original size:16 final size:16
Alignment explanation
Indices: 750613--750646 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
750603 GATTCGAGCT
*
750613 TATGTAGTCAAAGAAC
1 TATGGAGTCAAAGAAC
750629 TATGGAGTCAAAGAAC
1 TATGGAGTCAAAGAAC
750645 TA
1 TA
750647 ACGAACAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.24
Consensus pattern (16 bp):
TATGGAGTCAAAGAAC
Found at i:752856 original size:23 final size:23
Alignment explanation
Indices: 752828--752879 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
752818 CATTCGTGTA
752828 CATTATACGTGGCACTATATGTG
1 CATTATACGTGGCACTATATGTG
* * *
752851 TATTATACTTGGCACTATCTGTG
1 CATTATACGTGGCACTATATGTG
752874 CATTAT
1 CATTAT
752880 GGGAGTTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.40
Consensus pattern (23 bp):
CATTATACGTGGCACTATATGTG
Found at i:754420 original size:74 final size:74
Alignment explanation
Indices: 754299--754448 Score: 300
Period size: 74 Copynumber: 2.0 Consensus size: 74
754289 GCAATTTCTC
754299 AACCTATTTCAAAATCATGAGTAAAATAATGTGTAGTAATATTGAGGAGTTATTCCCTAAAGAAG
1 AACCTATTTCAAAATCATGAGTAAAATAATGTGTAGTAATATTGAGGAGTTATTCCCTAAAGAAG
754364 TGTTATCGA
66 TGTTATCGA
754373 AACCTATTTCAAAATCATGAGTAAAATAATGTGTAGTAATATTGAGGAGTTATTCCCTAAAGAAG
1 AACCTATTTCAAAATCATGAGTAAAATAATGTGTAGTAATATTGAGGAGTTATTCCCTAAAGAAG
754438 TGTTATCGA
66 TGTTATCGA
754447 AA
1 AA
754449 TTTCTTATGC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (74 bp):
AACCTATTTCAAAATCATGAGTAAAATAATGTGTAGTAATATTGAGGAGTTATTCCCTAAAGAAG
TGTTATCGA
Found at i:757221 original size:24 final size:24
Alignment explanation
Indices: 757193--757253 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
757183 CATACTCAAG
757193 GAGTATCGATACCATACAAAGTAA
1 GAGTATCGATACCATACAAAGTAA
*
757217 GAGTATCAATACCATACAAAGTAA
1 GAGTATCGATACCATACAAAGTAA
757241 GAGTATCGATACC
1 GAGTATCGATACC
757254 TTAAGTAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.21
Consensus pattern (24 bp):
GAGTATCGATACCATACAAAGTAA
Found at i:757767 original size:180 final size:180
Alignment explanation
Indices: 757465--757826 Score: 724
Period size: 180 Copynumber: 2.0 Consensus size: 180
757455 GGTATTAGTA
757465 TTATAGGGCTTAGTATCGCCACCATCATCCTAAATTTTATTAAGGGTATTGACACTGATTTTATT
1 TTATAGGGCTTAGTATCGCCACCATCATCCTAAATTTTATTAAGGGTATTGACACTGATTTTATT
757530 TTCCTAAAACATCAAACCTAATTTTGGTATCGATACCCAAGTTTAGTAGCAATACCTTAGTATAG
66 TTCCTAAAACATCAAACCTAATTTTGGTATCGATACCCAAGTTTAGTAGCAATACCTTAGTATAG
757595 AAGTAACAATACTCCAGAAAGAAGTATTGATATTGCAAGGTTTCCTCAGT
131 AAGTAACAATACTCCAGAAAGAAGTATTGATATTGCAAGGTTTCCTCAGT
757645 TTATAGGGCTTAGTATCGCCACCATCATCCTAAATTTTATTAAGGGTATTGACACTGATTTTATT
1 TTATAGGGCTTAGTATCGCCACCATCATCCTAAATTTTATTAAGGGTATTGACACTGATTTTATT
757710 TTCCTAAAACATCAAACCTAATTTTGGTATCGATACCCAAGTTTAGTAGCAATACCTTAGTATAG
66 TTCCTAAAACATCAAACCTAATTTTGGTATCGATACCCAAGTTTAGTAGCAATACCTTAGTATAG
757775 AAGTAACAATACTCCAGAAAGAAGTATTGATATTGCAAGGTTTCCTCAGT
131 AAGTAACAATACTCCAGAAAGAAGTATTGATATTGCAAGGTTTCCTCAGT
757825 TT
1 TT
757827 CCAGTAGCTA
Statistics
Matches: 182, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 182 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (180 bp):
TTATAGGGCTTAGTATCGCCACCATCATCCTAAATTTTATTAAGGGTATTGACACTGATTTTATT
TTCCTAAAACATCAAACCTAATTTTGGTATCGATACCCAAGTTTAGTAGCAATACCTTAGTATAG
AAGTAACAATACTCCAGAAAGAAGTATTGATATTGCAAGGTTTCCTCAGT
Found at i:771552 original size:53 final size:53
Alignment explanation
Indices: 771437--771553 Score: 180
Period size: 53 Copynumber: 2.2 Consensus size: 53
771427 AATGCAGAAA
* *
771437 AAAATAGTGAAGAAAAAACTGATTTGGTTCGAACTGAGCAGAAAAGTTCGAAC
1 AAAATAGTGCAGAAAAAACTGATTTGGTCCGAACTGAGCAGAAAAGTTCGAAC
* * *
771490 AAAATAGTGCAGAAAAAATTGATTTGGTCCGAACTGTGCAGAAAAGTTTGAAC
1 AAAATAGTGCAGAAAAAACTGATTTGGTCCGAACTGAGCAGAAAAGTTCGAAC
*
771543 AAAACAGTGCA
1 AAAATAGTGCA
771554 ATGTAAAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 58 1.00
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.21
Consensus pattern (53 bp):
AAAATAGTGCAGAAAAAACTGATTTGGTCCGAACTGAGCAGAAAAGTTCGAAC
Found at i:771991 original size:26 final size:24
Alignment explanation
Indices: 771929--771991 Score: 60
Period size: 24 Copynumber: 2.6 Consensus size: 24
771919 CATTTTAATC
771929 AAAATAT-TAATTATTAAAATATTT
1 AAAATATAT-ATTATTAAAATATTT
*
771953 AAAATATAT-TTATTAATAT-TTT
1 AAAATATATATTATTAAAATATTT
771975 GAATAATATAATATTAT
1 -AA-AATAT-ATATTAT
771992 ATTTTTAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 3 0.09
23 11 0.33
24 12 0.36
25 3 0.09
26 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
AAAATATATATTATTAAAATATTT
Found at i:771993 original size:22 final size:23
Alignment explanation
Indices: 771963--772009 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
771953 AAAATATATT
771963 TATTAATATTTTGAATAATATAA
1 TATTAATATTTTGAATAATATAA
* *
771986 TATT-ATATTTTTAATATTATAA
1 TATTAATATTTTGAATAATATAA
772008 TA
1 TA
772010 AATTATCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TATTAATATTTTGAATAATATAA
Found at i:772166 original size:27 final size:27
Alignment explanation
Indices: 772086--772177 Score: 73
Period size: 27 Copynumber: 3.3 Consensus size: 27
772076 AATAAAATTT
* *
772086 ATATTATTTAT-TAATTTCATAGAAATA
1 ATATTATTTATAT-ATTTAATATAAATA
* *
772113 ATATTA-TTAAAT-TATTAATAATGAATA
1 ATATTATTTATATAT-TTAAT-ATAAATA
772140 ATATTATTTATATATTTAATATTAATATA
1 ATATTATTTATATATTTAATA-TAA-ATA
*
772169 ATAATATTT
1 ATATTATTT
772178 TAATTATGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
25 1 0.02
26 7 0.14
27 19 0.37
28 12 0.24
29 12 0.24
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (27 bp):
ATATTATTTATATATTTAATATAAATA
Found at i:772204 original size:23 final size:24
Alignment explanation
Indices: 772178--772223 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
772168 AATAATATTT
772178 TAATT-ATGATATTT-AAAATATAC
1 TAATTAAT-ATATTTAAAAATATAC
*
772201 TAATTAATATTTTTAAAAATATA
1 TAATTAATATATTTAAAAATATA
772224 ATATATCACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (24 bp):
TAATTAATATATTTAAAAATATAC
Found at i:772384 original size:22 final size:22
Alignment explanation
Indices: 772341--772400 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
772331 TTTTAATAAT
* * *
772341 AAATAAATTATTTTAATATTTTA
1 AAATAAATAATATTAA-GTTTTA
*
772364 AAATTAATAATATTAAGTTTTA
1 AAATAAATAATATTAAGTTTTA
**
772386 TGATAAATAATATTA
1 AAATAAATAATATTA
772401 TTTATTATGT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (22 bp):
AAATAAATAATATTAAGTTTTA
Found at i:782509 original size:26 final size:25
Alignment explanation
Indices: 782478--782527 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
782468 TATCCTGAAT
782478 ATTTAATTTAAATT-AAATAAATAAAG
1 ATTTAA-TTAAATTGAAAT-AATAAAG
*
782504 ATTTAATTAATTTGAAATAATAAA
1 ATTTAATTAAATTGAAATAATAAA
782528 ATCCCTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (25 bp):
ATTTAATTAAATTGAAATAATAAAG
Found at i:788304 original size:12 final size:12
Alignment explanation
Indices: 788287--788311 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
788277 TTCAGTTATA
788287 TATGTGTGTGTG
1 TATGTGTGTGTG
788299 TATGTGTGTGTG
1 TATGTGTGTGTG
788311 T
1 T
788312 TTAACATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.40, T:0.52
Consensus pattern (12 bp):
TATGTGTGTGTG
Found at i:794528 original size:42 final size:41
Alignment explanation
Indices: 794482--794873 Score: 343
Period size: 42 Copynumber: 9.3 Consensus size: 41
794472 CATATTCGCA
* *
794482 TTGCGATAGTCCAAGTTCGCGTTGCGA-TAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAGTT--CG
* * *
794524 TTGCGATTTATTCCAAATAT---GTTGCGATTTATTCCAAATTCG
1 TTGCGA--TAGTCCAAGT-TCGCGTTGCGA-TTATTCCAAGTTCG
* *
794566 TTGCGATAGTTCAAGTTCGCGTTGCGGTTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGC-GATTATTCCAAGTTCG
* * *
794608 TTGCGATAGTCGAAGTTTGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAGTTCG
* * *
794650 TTGCGATTTATTCCAAATT--CGTTGCGA-TAGTCCAAGTTTGCG
1 TTGCGA--TAGTCCAAGTTCGCGTTGCGATTATTCCAAG-TT-CG
* * * *
794692 TTGCGATTTATTCCAAATT--TGTTGCGATTTATTCCAAATTCG
1 TTGCGA--TAGTCCAAGTTCGCGTTGCGA-TTATTCCAAGTTCG
794734 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAGTTCG
* *
794776 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAGTTCG
* ** * *
794818 TTGCGATAGTCGAAGTTCATGTTGCGATTTATTCCAAATTCA
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAGTTCG
794860 TTGCGATAGTCCAA
1 TTGCGATAGTCCAA
794874 AATCGCAACG
Statistics
Matches: 299, Mismatches: 33, Indels: 36
0.81 0.09 0.10
Matches are distributed among these distances:
39 1 0.00
40 23 0.08
41 3 0.01
42 237 0.79
43 3 0.01
44 31 0.10
45 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (41 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAGTTCG
Found at i:794568 original size:63 final size:61
Alignment explanation
Indices: 794482--794874 Score: 352
Period size: 63 Copynumber: 6.2 Consensus size: 61
794472 CATATTCGCA
* *
794482 TTGCGATAGTCCAAGTTCGCGTTGCGA-TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATAT-G
1 TTGCGATAGTCCAAATT-GCGTTGCGATTAGTCCAAGTT--CGTTGCGATTTATTCCAAAT-TCG
* * * *
794545 TTGCGATTTATTCCAAATT-CGTTGCGA-TAGTTCAAGTTCGCGTTGCGGTTTATTCCAAGTTCG
1 TTGCGA--TAGTCCAAATTGCGTTGCGATTAGTCCAAGTT--CGTTGCGATTTATTCCAAATTCG
* * * *
794608 TTGCGATAGTCGAAGTTTGCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAA-ATTGCGTTGCGA-TTAGTCCAAGTTCGTTGCGATTTATTCCAAATTCG
* * * *
794671 TTGCGATAGTCCAAGTTTGCGTTGCGATTTATTCCAAATTTGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAA-ATTGCGTTGCGA-TTAGTCCAAGTTCGTTGCGATTTATTCCAAATTCG
* * * * *
794734 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGA--TAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAATT-GCGTTGCGA-TTAGTCCAAGTTCGTTGCGATTTATTCCAAATT--CG
* * *
794797 TTGCGATTTATTCCAAATT-CGTTGCGA-TAGTCGAAGTTCATGTTGCGATTTATTCCAAATTCA
1 TTGCGA--TAGTCCAAATTGCGTTGCGATTAGTCCAAGTTC--GTTGCGATTTATTCCAAATTCG
794860 TTGCGATAGTCCAAA
1 TTGCGATAGTCCAAA
794875 ATCGCAACGA
Statistics
Matches: 283, Mismatches: 31, Indels: 34
0.81 0.09 0.10
Matches are distributed among these distances:
61 32 0.11
62 5 0.02
63 212 0.75
65 34 0.12
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (61 bp):
TTGCGATAGTCCAAATTGCGTTGCGATTAGTCCAAGTTCGTTGCGATTTATTCCAAATTCG
Found at i:794610 original size:105 final size:105
Alignment explanation
Indices: 794501--794866 Score: 501
Period size: 105 Copynumber: 3.5 Consensus size: 105
794491 TCCAAGTTCG
794501 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATAT-GTTGCGATTTATTCCAAATTC
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAAT-TCGTTGCGATTTATTCCAAATTC
* *
794565 GTTGCGATAGTTCAAGTTCGCGTTGCGGTTTATTCCAAGTT
65 GTTGCGATAGTTCAAGTTCGCGTTGCGATTTATTCCAAATT
*
794606 CGTTGCGATAGTCGAAGTTTGCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCG
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCG
* *
794671 TTGCGATAGTCCAAGTTTGCGTTGCGATTTATTCCAAATT
66 TTGCGATAGTTCAAGTTCGCGTTGCGATTTATTCCAAATT
* * * * * * *
794711 TGTTGCGATTTATTCCAAATT--CGTTGCGA--TAGTCCAAGTTCGCGTTGCGATTTATTCCAAG
1 CGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT--CGTTGCGATTTATTCCAAA
794772 TTCGTTGCGATAG-TCGAAGTTCGCGTTGCGATTTATTCCAAATT
62 TTCGTTGCGATAGTTC-AAGTTCGCGTTGCGATTTATTCCAAATT
** *
794816 CGTTGCGATAGTCGAAGTTCATGTTGCGATTTATTCCAAATTCATTGCGAT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGAT
794867 AGTCCAAAAT
Statistics
Matches: 229, Mismatches: 22, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
103 17 0.07
104 2 0.01
105 193 0.84
107 17 0.07
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (105 bp):
CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCG
TTGCGATAGTTCAAGTTCGCGTTGCGATTTATTCCAAATT
Found at i:794846 original size:84 final size:83
Alignment explanation
Indices: 794482--794870 Score: 427
Period size: 84 Copynumber: 4.6 Consensus size: 83
794472 CATATTCGCA
* * * * *
794482 TTGCGATAGTCCAAGTTCGCGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATAT-
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTT--CGTTGCGA--TAGTCGAAGT-TG
794544 -GTTGCGATTTATTCCAAATTCG
61 CGTTGCGATTTATTCCAAATTCG
* *
794566 TTGCGATAGTTCAAGTTCGCGTTGCGGTTTATTCCAAGTTCGTTGCGATAGTCGAAGTTTGCGTT
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAG-TTGCGTT
794631 GCGATTTATTCCAAATTCG
65 GCGATTTATTCCAAATTCG
* * * * * *
794650 TTGCGATTTATTCCAAATT--CGTTGCGA--TAGTCCAAGTTTGCGTTGCGATTTATTCCAAATT
1 TTGCGA--TAGTCCAAGTTCGCGTTGCGATTTATTCCAAG-TT-CGTTGCGA--TAGTCGAAGTT
*
794711 -TGTTGCGATTTATTCCAAATTCG
60 GCGTTGCGATTTATTCCAAATTCG
794734 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTT
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTT-GCGTT
794799 GCGATTTATTCCAAATTCG
65 GCGATTTATTCCAAATTCG
* ** * *
794818 TTGCGATAGTCGAAGTTCATGTTGCGATTTATTCCAAATTCATTGCGATAGTC
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTC
794871 CAAAATCGCA
Statistics
Matches: 260, Mismatches: 28, Indels: 34
0.81 0.09 0.11
Matches are distributed among these distances:
82 32 0.12
83 3 0.01
84 190 0.73
85 4 0.02
86 31 0.12
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (83 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTGCGTTG
CGATTTATTCCAAATTCG
Found at i:795643 original size:21 final size:21
Alignment explanation
Indices: 795619--795685 Score: 107
Period size: 21 Copynumber: 3.2 Consensus size: 21
795609 AAATCACAAC
795619 GCGAACTTCGACTATCGCAAT
1 GCGAACTTCGACTATCGCAAT
*
795640 GCGAACTTGGACTATCGCAAT
1 GCGAACTTCGACTATCGCAAT
* *
795661 GGGAACTTCGACTATCGCATT
1 GCGAACTTCGACTATCGCAAT
795682 GCGA
1 GCGA
795686 TTTACATATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (21 bp):
GCGAACTTCGACTATCGCAAT
Found at i:795720 original size:21 final size:21
Alignment explanation
Indices: 795694--795740 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
795684 GATTTACATA
*
795694 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCAAAG
795715 TTCGCATTGCGATAGTCAAAG
1 TTCGCATTGCGATAGTCAAAG
795736 TTCGC
1 TTCGC
795741 GTTGTGATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCAAAG
Found at i:796117 original size:2 final size:2
Alignment explanation
Indices: 796110--796157 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
796100 CGTTTTTGAA
796110 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
796152 AT AT AT
1 AT AT AT
796158 TAAAAAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:796212 original size:37 final size:35
Alignment explanation
Indices: 796171--796342 Score: 163
Period size: 38 Copynumber: 4.8 Consensus size: 35
796161 AAAAAATCGG
* *
796171 TTTTGGAAAACATATGATATATAGTTTTGAAAACA
1 TTTTTGAAAACATATAATATATAGTTTTGAAAACA
796206 TTTTTTGAAAACGTATATAATATATAGTTTTGAAAACA
1 -TTTTTGAAAAC--ATATAATATATAGTTTTGAAAACA
* * *
796244 TTTTTGAACATATATATAATATATA-TTTTTAAAATA
1 TTTTTGAA-A-ACATATAATATATAGTTTTGAAAACA
* *
796280 TTTTTGAAAAAAATATATAATATATAATTTTGAAAACA
1 TTTTTG---AAAACATATAATATATAGTTTTGAAAACA
* *
796318 TTTTCG-AAA-AT-TTATATATAGTTTT
1 TTTTTGAAAACATATAATATATAGTTTT
796343 TTTTTAAATA
Statistics
Matches: 118, Mismatches: 10, Indels: 20
0.80 0.07 0.14
Matches are distributed among these distances:
32 12 0.10
33 2 0.02
34 3 0.03
36 25 0.21
37 34 0.29
38 39 0.33
39 3 0.03
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (35 bp):
TTTTTGAAAACATATAATATATAGTTTTGAAAACA
Found at i:796283 original size:74 final size:74
Alignment explanation
Indices: 796182--796361 Score: 202
Period size: 74 Copynumber: 2.4 Consensus size: 74
796172 TTTGGAAAAC
* * ** *
796182 ATATGATATATAGTTTTGAAAACATTTTTTG-AAAACGTATATAATATATAGTTTTGAAAACATT
1 ATAT-ATATATA-TTTTTAAAATATTTTTTGAAAAAAATATATAATATATAATTTTGAAAACATT
* *
796246 TTTGAACATAT
64 TTCGAAAATAT
796257 ATATAATATATATTTTTAAAATA-TTTTTGAAAAAAATATATAATATATAATTTTGAAAACATTT
1 ATAT-ATATATATTTTTAAAATATTTTTTGAAAAAAATATATAATATATAATTTTGAAAACATTT
*
796321 TCGAAAATTT
65 TCGAAAATAT
* *
796331 ATATATAGTTTTTTTTTAAATATATATTTTT
1 ATATATA-TATATTTTTAAA-ATAT-TTTTT
796362 AGAACACATT
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
73 9 0.10
74 61 0.69
75 14 0.16
77 5 0.06
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (74 bp):
ATATATATATATTTTTAAAATATTTTTTGAAAAAAATATATAATATATAATTTTGAAAACATTTT
CGAAAATAT
Found at i:796327 original size:38 final size:37
Alignment explanation
Indices: 796177--796327 Score: 178
Period size: 37 Copynumber: 4.1 Consensus size: 37
796167 TCGGTTTTGG
* * *
796177 AAAACATATGATATATAGTTTTGAAAACATTTTTTGAA
1 AAAATATATAATATATAATTTTGAAAACA-TTTTTGAA
** *
796215 AACGTATATAATATATAGTTTTGAAAACATTTTTGAA
1 AAAATATATAATATATAATTTTGAAAACATTTTTGAA
* * * *
796252 CATATATATAATATAT-ATTTTTAAAATATTTTTGAAA
1 AAAATATATAATATATAATTTTGAAAACATTTTTG-AA
*
796289 AAAATATATAATATATAATTTTGAAAACATTTTCGAA
1 AAAATATATAATATATAATTTTGAAAACATTTTTGAA
796326 AA
1 AA
796328 TTTATATATA
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
36 15 0.16
37 41 0.43
38 40 0.42
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (37 bp):
AAAATATATAATATATAATTTTGAAAACATTTTTGAA
Found at i:802548 original size:23 final size:23
Alignment explanation
Indices: 802522--802579 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 23
802512 TTTGTATAAT
802522 TTAATTATTTGAATTTGAATATA
1 TTAATTATTTGAATTTGAATATA
**
802545 TTAATTTACTTAAAATTTGAATATA
1 TTAA-TTA-TTTGAATTTGAATATA
*
802570 TT-TTTATTTG
1 TTAATTATTTG
802580 TATACCATTG
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
22 2 0.07
23 7 0.25
24 3 0.11
25 16 0.57
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (23 bp):
TTAATTATTTGAATTTGAATATA
Found at i:803287 original size:15 final size:14
Alignment explanation
Indices: 803249--803288 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
803239 TTAGATTACT
803249 AAAATAA-AAATAA
1 AAAATAAGAAATAA
*
803262 AAAATATGAAATAA
1 AAAATAAGAAATAA
803276 AAAATAAAGAAAT
1 AAAAT-AAGAAAT
803289 CTAGAAAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 6 0.26
14 11 0.48
15 6 0.26
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (14 bp):
AAAATAAGAAATAA
Found at i:804142 original size:22 final size:22
Alignment explanation
Indices: 804072--804143 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 22
804062 TTGTTGGTAT
* * *
804072 TTGGGATTGTTTTTTGGTTCAA
1 TTGGTATTGTTTTTTTGTTCGA
* *
804094 TTTGTATGTTGTTTTGTTTGTTTGA
1 TTGGTA--TTGTTTT-TTTGTTCGA
804119 TTGGTATTGTTTTTTTGTTCGA
1 TTGGTATTGTTTTTTTGTTCGA
804141 TTG
1 TTG
804144 ATGCTTGGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
22 15 0.38
23 7 0.17
24 7 0.17
25 11 0.28
ACGTcount: A:0.10, C:0.03, G:0.25, T:0.62
Consensus pattern (22 bp):
TTGGTATTGTTTTTTTGTTCGA
Found at i:804858 original size:40 final size:38
Alignment explanation
Indices: 804605--805051 Score: 503
Period size: 36 Copynumber: 11.9 Consensus size: 38
804595 AAATCGTATA
*
804605 ATATA-TTTTCAAAAATATTTT--AAAACTATATATTAT
1 ATATATTTTTC-AAAATGTTTTCAAAAACTATATATTAT
* *
804641 ATATATTTTTTAAAACTATTTTC-AAAACTATATA-T-T
1 ATATATTTTTCAAAA-TGTTTTCAAAAACTATATATTAT
*
804677 ATATAGTTTTCAACAATGTTTTC-AAAACTATATATTAT
1 ATATATTTTTCAA-AATGTTTTCAAAAACTATATATTAT
*
804715 ATA-AGTTTTCAAAAAATGTTTT-AAAAACTATATATTAT
1 ATATATTTTTC--AAAATGTTTTCAAAAACTATATATTAT
*
804753 ATA-AGTTTTCAAAATGTTTTC-AAAACTATATATTAT
1 ATATATTTTTCAAAATGTTTTCAAAAACTATATATTAT
* * * *
804789 ATAT-GTTTTAAAAATG-TTTCCAAAATTATATATTAT
1 ATATATTTTTCAAAATGTTTTCAAAAACTATATATTAT
*
804825 ATATATTTTTCAAAATGTTTTCAAAAACTTTATATTAT
1 ATATATTTTTCAAAATGTTTTCAAAAACTATATATTAT
*
804863 ATATATTTTTTCAAAATGTTTTTTAAAAACTATATATTAT
1 ATATA-TTTTTCAAAATG-TTTTCAAAAACTATATATTAT
* *
804903 ATATGTTTTTTCAAAATGTTTTTTAAAAACTATATATTAT
1 ATAT-ATTTTTCAAAATG-TTTTCAAAAACTATATATTAT
* * *
804943 ATATGTTTTTTCAAAATGTTTTTTAAAAACTATTTATTAT
1 ATAT-ATTTTTCAAAATG-TTTTCAAAAACTATATATTAT
*
804983 ATATATTTTTCCAAAATGTTTTC-AAAA-T-TATATAAT
1 ATATATTTTT-CAAAATGTTTTCAAAAACTATATATTAT
*
805019 ATATATTTTTGAAAATGTTTTCAAAAACTATAT
1 ATATATTTTTCAAAATGTTTTCAAAAACTATAT
805052 TATATTATTA
Statistics
Matches: 370, Mismatches: 20, Indels: 40
0.86 0.05 0.09
Matches are distributed among these distances:
35 15 0.04
36 115 0.31
37 33 0.09
38 77 0.21
39 23 0.06
40 107 0.29
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (38 bp):
ATATATTTTTCAAAATGTTTTCAAAAACTATATATTAT
Found at i:810232 original size:10 final size:11
Alignment explanation
Indices: 810217--810244 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
810207 CTTTAATTGC
810217 AAAAAAATTAA
1 AAAAAAATTAA
810228 AAAAAAATTAA
1 AAAAAAATTAA
810239 AAAAAA
1 AAAAAA
810245 CTCGATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (11 bp):
AAAAAAATTAA
Found at i:811619 original size:3 final size:3
Alignment explanation
Indices: 811579--811640 Score: 58
Period size: 3 Copynumber: 21.3 Consensus size: 3
811569 CAAAAATTAA
* * * *
811579 AAT AA- AAT AAG ATT AAT -AT AAT AA- ACAT AAA AAC AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
811622 AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
811641 TATTTTCAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
2 5 0.10
3 42 0.88
4 1 0.02
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:811780 original size:51 final size:52
Alignment explanation
Indices: 811708--811833 Score: 170
Period size: 51 Copynumber: 2.5 Consensus size: 52
811698 ATATATTATA
*
811708 TATATATTA-AAATGTTTTCAAAACTATATA-T-TATATA-GTTTTCAAAAC
1 TATATATTATATATGTTTTCAAAACTATATACTATATATATGTTTTCAAAAC
* *
811756 TATATACTATATTTATGTTTTCAAAACTATATACTATATTTATGTTTTCAAAAC
1 TATATA-T-TATATATGTTTTCAAAACTATATACTATATATATGTTTTCAAAAC
*
811810 TATATATTATATAAGTTTTCAAAA
1 TATATATTATATATGTTTTCAAAA
811834 TGTTTTCAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
48 6 0.09
49 1 0.01
50 2 0.03
51 19 0.28
52 16 0.24
53 6 0.09
54 17 0.25
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (52 bp):
TATATATTATATATGTTTTCAAAACTATATACTATATATATGTTTTCAAAAC
Found at i:811783 original size:27 final size:25
Alignment explanation
Indices: 811708--811833 Score: 166
Period size: 27 Copynumber: 5.0 Consensus size: 25
811698 ATATATTATA
*
811708 TATATATTA-AAATGTTTTCAAAAC
1 TATATATTATATATGTTTTCAAAAC
811732 TATATATTATATA-GTTTTCAAAAC
1 TATATATTATATATGTTTTCAAAAC
*
811756 TATATACTATATTTATGTTTTCAAAAC
1 TATATA-T-TATATATGTTTTCAAAAC
*
811783 TATATACTATATTTATGTTTTCAAAAC
1 TATATA-T-TATATATGTTTTCAAAAC
*
811810 TATATATTATATAAGTTTTCAAAA
1 TATATATTATATATGTTTTCAAAA
811834 TGTTTTCAAA
Statistics
Matches: 94, Mismatches: 4, Indels: 7
0.90 0.04 0.07
Matches are distributed among these distances:
24 26 0.28
25 18 0.19
26 6 0.06
27 44 0.47
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (25 bp):
TATATATTATATATGTTTTCAAAAC
Found at i:811957 original size:40 final size:39
Alignment explanation
Indices: 811800--812005 Score: 199
Period size: 40 Copynumber: 5.4 Consensus size: 39
811790 TATATTTATG
* *
811800 TTTTCAAAACTATATATTATATA-AGTTTTC-AAAATGT
1 TTTTAAAAACTATATATTATATATATTTTTCTAAAATGT
* * ***
811837 TTTCAAAAACTATATATTATATATATTTTTTCAAAAAAAA
1 TTTTAAAAACTATATATTATATATA-TTTTTCTAAAATGT
* * *
811877 TTTTAAAAACTATATATTACATATATTTTTCCAAATTGTT
1 TTTTAAAAACTATATATTATATATATTTTTCTAAAATG-T
* *
811917 TTTTAAAAACTATATAATATATATATTTTTCTACAATG-
1 TTTTAAAAACTATATATTATATATATTTTTCTAAAATGT
* * * *
811955 TTTTCAAAA-T-TATATAATATATATTTTT-GAAAATAT
1 TTTTAAAAACTATATATTATATATATTTTTCTAAAATGT
*
811991 TTTCAAAAACTATAT
1 TTTTAAAAACTATAT
812006 TATATTAATA
Statistics
Matches: 136, Mismatches: 26, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
35 4 0.03
36 23 0.17
37 23 0.17
38 12 0.09
39 14 0.10
40 60 0.44
ACGTcount: A:0.43, C:0.08, G:0.02, T:0.47
Consensus pattern (39 bp):
TTTTAAAAACTATATATTATATATATTTTTCTAAAATGT
Found at i:825952 original size:3 final size:3
Alignment explanation
Indices: 825946--826004 Score: 64
Period size: 3 Copynumber: 19.3 Consensus size: 3
825936 CGTTAAATAA
* * * *
825946 TAT TAT TAT ATAT TAT TAT TAT TAT TAT TAT TAT CAT CAT CAT CAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
825992 TAT TAA TAT TAT T
1 TAT TAT TAT TAT T
826005 GTTAATATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:827639 original size:54 final size:54
Alignment explanation
Indices: 827503--828035 Score: 682
Period size: 54 Copynumber: 9.9 Consensus size: 54
827493 CTATGTGTAC
* *
827503 TATCGACACTAAGTGTGCAACCCACGGAATTCATAATTAGTTTATG-ACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAACGACCG
* * *
827556 TATCGACACTAAGTGTGCAACCCATGAAATTCATAATAAGTTTATGAACGATCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAACGACCG
* * *
827610 TATCGGA-ACTAAGTGTGCAACCAACGAAATTCATAATGAGTTTGTGAACAACCG
1 TATC-GACACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAACGACCG
*
827664 TATCGACACTAAGTGTGCAACCCACGAAATTTATAATGAGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAACGACCG
* * ** * *
827718 TATCTACATTAAGTGTGCAACCCAAAAAATTCATAATGAGTTTATAAACAACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAACGACCG
* * * *
827772 TATCGACACTAAGTGTACAACCTA-TAGAATTCATAATAAGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGA-AATTCATAATGAGTTTATGAACGACCG
* * *
827826 TATC-AGCACTAAGTGTGCAACCCATGTAATTCATAATGAGTTTATGAACAACCG
1 TATCGA-CACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAACGACCG
* * *
827880 TATCAACACTAAGTGTGCAACCCAGGAAATTCATAAT-ATGTTTATGAAGGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATGA-GTTTATGAACGACCG
* * *
827934 TATCGACACTAAGTGTGCAACCCAC-ATAATTCATAATAAGTTTTTGAACGACTG
1 TATCGACACTAAGTGTGCAACCCACGA-AATTCATAATGAGTTTATGAACGACCG
* * * * *
827988 TATCGGCATTAAGTGTGCAATCCACGAAATTCACAATGAGTTTTTGAA
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAA
828036 TTTTCATATT
Statistics
Matches: 420, Mismatches: 49, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
53 49 0.12
54 366 0.87
55 5 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (54 bp):
TATCGACACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAACGACCG
Found at i:828589 original size:2 final size:2
Alignment explanation
Indices: 828582--828631 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
828572 GACATGTTTA
828582 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
828624 AT A- AT AT A
1 AT AT AT AT A
828632 AGAATGTCTT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:832780 original size:54 final size:54
Alignment explanation
Indices: 832712--833014 Score: 398
Period size: 54 Copynumber: 5.6 Consensus size: 54
832702 TTATGTTTAC
* * *
832712 TATCGGCACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
*
832766 TATCGACACTAAGTGTGCAACCCACTG-AATTCATAATAAGTTTATGAACGACCA
1 TATCGACACTAAGTGTGCAACCCAC-GAAATTCATAATAAGTTTATGAACGACCG
* * * *
832820 TATC-AGCACCAAGTGTGCAATCCATGAAATTCATAATGAA-TTTATGAACGACCA
1 TATCGA-CACTAAGTGTGCAACCCACGAAATTCATAAT-AAGTTTATGAACGACCG
*
832874 TATCGACACTAAGTGTGCAACCCA-TAGAATTCATAATAAGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACGACCG
* * * *
832928 TATCGGCACTAAGTGTGCAACCCATGAAATTTATAATAAGTTTATGAACGACTG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
** *
832982 TATCGGTACTAAGTGTGTAACCCACGAAATTCA
1 TATCGACACTAAGTGTGCAACCCACGAAATTCA
833015 CAACGAAATT
Statistics
Matches: 222, Mismatches: 19, Indels: 16
0.86 0.07 0.06
Matches are distributed among these distances:
53 5 0.02
54 212 0.95
55 5 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (54 bp):
TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
Found at i:832855 original size:108 final size:108
Alignment explanation
Indices: 832712--833014 Score: 448
Period size: 108 Copynumber: 2.8 Consensus size: 108
832702 TTATGTTTAC
* *
832712 TATCGGCACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGTATCGACACTA
1 TATCGGCACTAAGTGTGCAACCCATGAAATTCATAATGAGTTTATGAACGACCGTATCGACACTA
832777 AGTGTGCAACCCACTGAATTCATAATAAGTTTATGAACGACCA
66 AGTGTGCAACCCACTGAATTCATAATAAGTTTATGAACGACCA
* * * * *
832820 TATCAGCACCAAGTGTGCAATCCATGAAATTCATAATGAATTTATGAACGACCATATCGACACTA
1 TATCGGCACTAAGTGTGCAACCCATGAAATTCATAATGAGTTTATGAACGACCGTATCGACACTA
*
832885 AGTGTGCAACCCA-TAGAATTCATAATAAGTTTATGAACGACCG
66 AGTGTGCAACCCACT-GAATTCATAATAAGTTTATGAACGACCA
* * * **
832928 TATCGGCACTAAGTGTGCAACCCATGAAATTTATAATAAGTTTATGAACGACTGTATCGGTACTA
1 TATCGGCACTAAGTGTGCAACCCATGAAATTCATAATGAGTTTATGAACGACCGTATCGACACTA
*
832993 AGTGTGTAACCCAC-GAAATTCA
66 AGTGTGCAACCCACTG-AATTCA
833015 CAACGAAATT
Statistics
Matches: 173, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
107 2 0.01
108 171 0.99
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (108 bp):
TATCGGCACTAAGTGTGCAACCCATGAAATTCATAATGAGTTTATGAACGACCGTATCGACACTA
AGTGTGCAACCCACTGAATTCATAATAAGTTTATGAACGACCA
Found at i:832998 original size:162 final size:162
Alignment explanation
Indices: 832712--833014 Score: 448
Period size: 162 Copynumber: 1.9 Consensus size: 162
832702 TTATGTTTAC
* * * *
832712 TATCGGCACTAAGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGTATCGACACTA
1 TATCGACACTAAGTGTGCAACCCAAGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTA
*
832777 AGTGTGCAACCCACTGAATTCATAATAAGTTTATGAACGACCATATCAGCACCAAGTGTGCAATC
66 AGTGTGCAACCCACTGAATTCATAATAAGTTTATGAACGACCATATCAGCACCAAGTGTGCAACC
*
832842 CATGAAATTCATAATGAATTTATGAACGACCA
131 CACGAAATTCATAATGAATTTATGAACGACCA
*
832874 TATCGACACTAAGTGTGCAACCCATAG-AATTCATAATAAGTTTATGAACGACCGTATCGGCACT
1 TATCGACACTAAGTGTGCAACCCA-AGAAATTCATAATAAGTTTATGAACGACCGTATCGACACT
* ** * * * *
832938 AAGTGTGCAACCCA-TGAAATTTATAATAAGTTTATGAACGACTGTATCGGTACTAAGTGTGTAA
65 AAGTGTGCAACCCACTG-AATTCATAATAAGTTTATGAACGACCATATCAGCACCAAGTGTGCAA
833002 CCCACGAAATTCA
129 CCCACGAAATTCA
833015 CAACGAAATT
Statistics
Matches: 125, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
161 2 0.02
162 122 0.98
163 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (162 bp):
TATCGACACTAAGTGTGCAACCCAAGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTA
AGTGTGCAACCCACTGAATTCATAATAAGTTTATGAACGACCATATCAGCACCAAGTGTGCAACC
CACGAAATTCATAATGAATTTATGAACGACCA
Found at i:833022 original size:12 final size:12
Alignment explanation
Indices: 833005--833041 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
832995 TGTGTAACCC
833005 ACGAAATTCACA
1 ACGAAATTCACA
833017 ACGAAATTCACA
1 ACGAAATTCACA
*
833029 ACGAAATTTACA
1 ACGAAATTCACA
833041 A
1 A
833042 TGAGTTTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.51, C:0.22, G:0.08, T:0.19
Consensus pattern (12 bp):
ACGAAATTCACA
Found at i:839423 original size:19 final size:19
Alignment explanation
Indices: 839372--839424 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 19
839362 AAGTCAACTC
* *
839372 GACCTGACCCATTAACTTT
1 GACCTGACCCGTTGACTTT
** **
839391 GACCCAACATGTTGACTTT
1 GACCTGACCCGTTGACTTT
839410 GACCTGACCCGTTGA
1 GACCTGACCCGTTGA
839425 TCGTTGATTG
Statistics
Matches: 24, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (19 bp):
GACCTGACCCGTTGACTTT
Found at i:839462 original size:22 final size:22
Alignment explanation
Indices: 839427--839475 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
839417 CCCGTTGATC
*
839427 GTTGATTGGTTGACCATTGACT
1 GTTGATCGGTTGACCATTGACT
839449 -TTGATCGGTCTGACCATTGACT
1 GTTGATCGGT-TGACCATTGACT
839471 GTTGA
1 GTTGA
839476 CATTGACTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 8 0.33
22 12 0.50
23 4 0.17
ACGTcount: A:0.18, C:0.16, G:0.27, T:0.39
Consensus pattern (22 bp):
GTTGATCGGTTGACCATTGACT
Found at i:842462 original size:191 final size:193
Alignment explanation
Indices: 842140--842545 Score: 489
Period size: 191 Copynumber: 2.1 Consensus size: 193
842130 TAAATGACGT
* * *
842140 TTATACATAACGTCACTTTATAATCGATAGTCAATGACAACTAGTTATGTCATTAAATTATATAA
1 TTATACATAACGTCACTTTATAATCGATAGTCAATGACAACTAGTTACGCCACTAAATTATATAA
* * *
842205 AATTTTGTTATTAATAATTCACATCGTCACGAATAATACATTAAAATCAATCTATATGCGATGAA
66 AATTTTGTTATTAATAATTCACATCGTCACGAATAATACAATAAAATCAACCTATATACGATGAA
* *
842270 AGAGATATTGTCACATTTTCAGTGACGTAATATAACGTTACCTAATAGTATTATGAATGA-CA
131 AGAGATATTGTCAAATTTTCAGTGACATAATATAACGTTACCTAATAGTATTATGAATGATCA
* * * **
842332 CTTATACATAACGTCATTTTATAA-CTTATATTGC-ATGACAGTTAGTTACGCCACTAAATTATA
1 -TTATACATAACGTCACTTTATAATC-GATAGT-CAATGACAACTAGTTACGCCACTAAATTATA
* * * * **
842395 TAATA-TTT-TTATTAATAATTTATATCGTCACGAATACTACAATAAAATCAACCTATATATTAT
63 TAAAATTTTGTTATTAATAATTCACATCGTCACGAATAATACAATAAAATCAACCTATATACGAT
* * * * ** * *
842458 GAAAGGGATATTTTCAAATTTTTAGTGACATAATATAATGTTATGTAATAGTATTTTGAATGATG
128 GAAAGAGATATTGTCAAATTTTCAGTGACATAATATAACGTTACCTAATAGTATTATGAATGATC
842523 A
193 A
* *
842524 TTATGCATAACGTCACCTTATA
1 TTATACATAACGTCACTTTATA
842546 CAATTTTCTC
Statistics
Matches: 180, Mismatches: 30, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
191 120 0.67
192 5 0.03
193 54 0.30
194 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.38
Consensus pattern (193 bp):
TTATACATAACGTCACTTTATAATCGATAGTCAATGACAACTAGTTACGCCACTAAATTATATAA
AATTTTGTTATTAATAATTCACATCGTCACGAATAATACAATAAAATCAACCTATATACGATGAA
AGAGATATTGTCAAATTTTCAGTGACATAATATAACGTTACCTAATAGTATTATGAATGATCA
Found at i:843695 original size:16 final size:16
Alignment explanation
Indices: 843674--843708 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
843664 TGGTAAGCCT
*
843674 TAACTAAGGAAATAAA
1 TAACTAAGAAAATAAA
843690 TAACTAAGAAAATAAA
1 TAACTAAGAAAATAAA
843706 TAA
1 TAA
843709 TTTATTATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.20
Consensus pattern (16 bp):
TAACTAAGAAAATAAA
Found at i:843912 original size:22 final size:23
Alignment explanation
Indices: 843872--843915 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
843862 AAAAATTATT
*
843872 AAAATTAATAAATTTAAAATAAA
1 AAAATTAATAAATTGAAAATAAA
*
843895 AAAATTAAT-TATTGAAAATAA
1 AAAATTAATAAATTGAAAATAA
843916 TTTGACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AAAATTAATAAATTGAAAATAAA
Found at i:844424 original size:22 final size:23
Alignment explanation
Indices: 844384--844427 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
844374 AAAAATTATT
*
844384 AAAATTAATAAATTTAAAATAAA
1 AAAATTAATAAATTGAAAATAAA
*
844407 AAAATTAAT-TATTGAAAATAA
1 AAAATTAATAAATTGAAAATAA
844428 TTTGACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AAAATTAATAAATTGAAAATAAA
Found at i:848836 original size:53 final size:53
Alignment explanation
Indices: 848679--848852 Score: 231
Period size: 54 Copynumber: 3.2 Consensus size: 53
848669 TGTACTTTGA
* *
848679 CACTAAGTGTGCAACCCACGGAATTCATAATGTGTTTATGAACGACCGTATCGG
1 CACTAAGTGTGCAACCCACAG-ATTCATAATGTGTTTATGAACGACTGTATCGG
* * * * *
848733 CACTATGTGTGCAACCCACAAAATTCATAACGTGTTTATGAACGATTGTATCAG
1 CACTAAGTGTGCAACCCAC-AGATTCATAATGTGTTTATGAACGACTGTATCGG
* **
848787 CACTAAGTGTACAACCCACAGATTCATAATAAGTTTATGAACGACTGTATCGG
1 CACTAAGTGTGCAACCCACAGATTCATAATGTGTTTATGAACGACTGTATCGG
*
848840 CACTACGTGTGCA
1 CACTAAGTGTGCA
848853 CCTCAAAGAA
Statistics
Matches: 102, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
53 39 0.38
54 63 0.62
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (53 bp):
CACTAAGTGTGCAACCCACAGATTCATAATGTGTTTATGAACGACTGTATCGG
Found at i:855455 original size:54 final size:55
Alignment explanation
Indices: 855370--855604 Score: 336
Period size: 54 Copynumber: 4.3 Consensus size: 55
855360 CTATCTATAC
*
855370 TATCGGCACTAAGTGTGCAACCA-ACATAATTCATAATGTGTTTATGAACGACCG
1 TATCGGCACTAAGTGTGCAACCATACAGAATTCATAATGTGTTTATGAACGACCG
*
855424 TATCGGCACTAAGTGTGCAA-CATGCAGAATTCATAATGTGTTTATGAACGACCG
1 TATCGGCACTAAGTGTGCAACCATACAGAATTCATAATGTGTTTATGAACGACCG
* * *
855478 TATCGACACTAAGTGTGCAACC-CACATAATTCATAATGTGTTTATGAACGACCG
1 TATCGGCACTAAGTGTGCAACCATACAGAATTCATAATGTGTTTATGAACGACCG
* * * *
855532 TATCGACACTAAGCGTGCAACCGAT--AGATTTCATAATATGTTTATGAACGACCG
1 TATCGGCACTAAGTGTGCAACC-ATACAGAATTCATAATGTGTTTATGAACGACCG
*
855586 TATCGGCACTACGTGTGCA
1 TATCGGCACTAAGTGTGCA
855605 CCTCAAAGAA
Statistics
Matches: 163, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
53 2 0.01
54 160 0.98
55 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (55 bp):
TATCGGCACTAAGTGTGCAACCATACAGAATTCATAATGTGTTTATGAACGACCG
Found at i:855565 original size:108 final size:107
Alignment explanation
Indices: 855370--855604 Score: 373
Period size: 108 Copynumber: 2.2 Consensus size: 107
855360 CTATCTATAC
*
855370 TATCGGCACTAAGTGTGCAACCAACATAATTCATAATGTGTTTATGAACGACCGTATCGGCACTA
1 TATCGGCACTAAGTGTGCAACCAACATAATTCATAATGTGTTTATGAACGACCGTATCGACACTA
* *
855435 AGTGTGCAACATGCAGAATTCATAATGTGTTTATGAACGACCG
66 AGCGTGCAACAT-CAGAATTCATAATATGTTTATGAACGACCG
* *
855478 TATCGACACTAAGTGTGCAACCCACATAATTCATAATGTGTTTATGAACGACCGTATCGACACTA
1 TATCGGCACTAAGTGTGCAACCAACATAATTCATAATGTGTTTATGAACGACCGTATCGACACTA
*
855543 AGCGTGCAACCGAT-AGATTTCATAATATGTTTATGAACGACCG
66 AGCGTGCAA-C-ATCAGAATTCATAATATGTTTATGAACGACCG
*
855586 TATCGGCACTACGTGTGCA
1 TATCGGCACTAAGTGTGCA
855605 CCTCAAAGAA
Statistics
Matches: 117, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
108 114 0.97
109 1 0.01
110 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (107 bp):
TATCGGCACTAAGTGTGCAACCAACATAATTCATAATGTGTTTATGAACGACCGTATCGACACTA
AGCGTGCAACATCAGAATTCATAATATGTTTATGAACGACCG
Found at i:856756 original size:18 final size:18
Alignment explanation
Indices: 856733--856775 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
856723 GATTCAATTT
856733 GGTTTCTCAATTAAGTTC
1 GGTTTCTCAATTAAGTTC
*
856751 GGTTTCTCAGTTAAGTTC
1 GGTTTCTCAATTAAGTTC
*
856769 AGTTTCT
1 GGTTTCT
856776 GACATAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.47
Consensus pattern (18 bp):
GGTTTCTCAATTAAGTTC
Found at i:861283 original size:13 final size:13
Alignment explanation
Indices: 861267--861305 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
861257 TCACTTTGGT
*
861267 CGTTGATTTTGAC
1 CGTTGACTTTGAC
861280 CGTTGACTTTGAC
1 CGTTGACTTTGAC
*
861293 CGTTAACTTTGAC
1 CGTTGACTTTGAC
861306 TTTAATCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.41
Consensus pattern (13 bp):
CGTTGACTTTGAC
Found at i:861320 original size:19 final size:19
Alignment explanation
Indices: 861298--861343 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
861288 TTGACCGTTA
861298 ACTTTGACTTTAATCATTG
1 ACTTTGACTTTAATCATTG
* *
861317 ACTTTGAATTTAATCGTTG
1 ACTTTGACTTTAATCATTG
861336 ACTTTGAC
1 ACTTTGAC
861344 CCAAAAAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (19 bp):
ACTTTGACTTTAATCATTG
Found at i:863041 original size:35 final size:35
Alignment explanation
Indices: 862980--863092 Score: 106
Period size: 36 Copynumber: 3.2 Consensus size: 35
862970 GAAGCTATGG
**
862980 TAGGTTCAGCTA--GTCAAACTAATAATTCCTTATA
1 TAGGTTCAGC-ACGGTCAAACTGGTAATTCCTTATA
* **
863014 TAGGTTCAG-ACGGATGAAACTGGTAATTCCTTGCA
1 TAGGTTCAGCACGG-TCAAACTGGTAATTCCTTATA
* * *
863049 CCAGGTTCAGCTCTGTCAAACTGGTAATTCCTTATA
1 -TAGGTTCAGCACGGTCAAACTGGTAATTCCTTATA
863085 TAGGTTCA
1 TAGGTTCA
863093 TACCAATCGA
Statistics
Matches: 62, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
32 1 0.02
34 10 0.16
35 23 0.37
36 26 0.42
37 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (35 bp):
TAGGTTCAGCACGGTCAAACTGGTAATTCCTTATA
Found at i:863109 original size:71 final size:70
Alignment explanation
Indices: 862981--863116 Score: 175
Period size: 71 Copynumber: 1.9 Consensus size: 70
862971 AAGCTATGGT
**
862981 AGGTTCAGCTAGTCAAACTAATAATTCCTTATATAGGTTCAGACGGATGAAACTGGTAATTCCTT
1 AGGTTCAGCTAGTCAAACTAATAATTCCTTATATAGGTTCAGACCAATGAAACTGGTAATTCCTT
863046 GCACC
66 GCACC
* ** * **
863051 AGGTTCAGCTCTGTCAAACTGGTAATTCCTTATATAGGTTCATACCAATCG-AGTTGGTAATTCC
1 AGGTTCAGCT-AGTCAAACTAATAATTCCTTATATAGGTTCAGACCAAT-GAAACTGGTAATTCC
863115 TT
64 TT
863117 ATAGATCTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
70 10 0.18
71 45 0.80
72 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (70 bp):
AGGTTCAGCTAGTCAAACTAATAATTCCTTATATAGGTTCAGACCAATGAAACTGGTAATTCCTT
GCACC
Found at i:863538 original size:13 final size:14
Alignment explanation
Indices: 863510--863547 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
863500 TTATGATCTC
863510 CTGAACATAATCCT
1 CTGAACATAATCCT
*
863524 CTGAACAT-TTCCT
1 CTGAACATAATCCT
863537 CTGAACTATAA
1 CTGAAC-ATAA
863548 ACTTCATGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (14 bp):
CTGAACATAATCCT
Found at i:864747 original size:21 final size:22
Alignment explanation
Indices: 864723--864764 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
864713 ACCCGACCCA
864723 TTGACT-GTCTGACCATTGACT
1 TTGACTGGTCTGACCATTGACT
* *
864744 TTGACTGGTCTTACCGTTGAC
1 TTGACTGGTCTGACCATTGAC
864765 CGTTGACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (22 bp):
TTGACTGGTCTGACCATTGACT
Found at i:866693 original size:18 final size:17
Alignment explanation
Indices: 866670--866708 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
866660 TAAAGTTTTT
*
866670 TTATTATCTATATTTAAA
1 TTATTATATAT-TTTAAA
*
866688 TTATTATATATTTTTAA
1 TTATTATATATTTTAAA
866705 TTAT
1 TTAT
866709 CAGGTTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATTATATATTTTAAA
Found at i:867013 original size:21 final size:22
Alignment explanation
Indices: 866980--867022 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
866970 AATGCTCAAA
866980 TATTTTTGCAAAA-AATATTTT
1 TATTTTTGCAAAATAATATTTT
** *
867001 TATTTTTTTAAAATAGTATTTT
1 TATTTTTGCAAAATAATATTTT
867023 GTCTACATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (22 bp):
TATTTTTGCAAAATAATATTTT
Found at i:867525 original size:22 final size:22
Alignment explanation
Indices: 867499--867544 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
867489 TTAGTAAATA
867499 TTTATTAGGAGTTATCACATTT
1 TTTATTAGGAGTTATCACATTT
* *
867521 TTTATTTGGAGTTATCACGTTT
1 TTTATTAGGAGTTATCACATTT
867543 TT
1 TT
867545 GTTAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.09, G:0.15, T:0.54
Consensus pattern (22 bp):
TTTATTAGGAGTTATCACATTT
Found at i:869791 original size:17 final size:17
Alignment explanation
Indices: 869769--869802 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
869759 TGACTTTGAC
869769 CCAAAAAGTCATATTTT
1 CCAAAAAGTCATATTTT
869786 CCAAAAAGTCATATTTT
1 CCAAAAAGTCATATTTT
869803 ATGTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (17 bp):
CCAAAAAGTCATATTTT
Found at i:872672 original size:20 final size:21
Alignment explanation
Indices: 872649--872690 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
872639 TACGTCAGAC
872649 TTGCAA-GATAAATC-TTTCCT
1 TTGCAAGGA-AAATCTTTTCCT
872669 TTGCAAGGAAAATCTTTTCCT
1 TTGCAAGGAAAATCTTTTCCT
872690 T
1 T
872691 ACTGTCTTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (21 bp):
TTGCAAGGAAAATCTTTTCCT
Found at i:873482 original size:100 final size:99
Alignment explanation
Indices: 873310--873508 Score: 344
Period size: 100 Copynumber: 2.0 Consensus size: 99
873300 CTTCAAATCT
*
873310 TTTTTTAAGCAAACTTTAAGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGGG
1 TTTTTTAAGCAAACTTTAAGGGAGTCAGCTAATCACACTACCATCCCACACTCTAAGTGAAAGGG
873375 AGCATACCTTCCACCCCCGAGCTAGTAAGGTAGA
66 AGCATACCTTCCACCCCCGAGCTAGTAAGGTAGA
* *
873409 TTTTTTAGGCATACTTTAAGGGGAGTCAGCTAATCACACTACCATCCCACACTCTAAGTGAAAGG
1 TTTTTTAAGCAAACTTTAA-GGGAGTCAGCTAATCACACTACCATCCCACACTCTAAGTGAAAGG
* *
873474 GAGCATACCTTCCACTCCCGAGCTAGTCAGGTAGA
65 GAGCATACCTTCCACCCCCGAGCTAGTAAGGTAGA
873509 GTCATCTCGT
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 17 0.18
100 77 0.82
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (99 bp):
TTTTTTAAGCAAACTTTAAGGGAGTCAGCTAATCACACTACCATCCCACACTCTAAGTGAAAGGG
AGCATACCTTCCACCCCCGAGCTAGTAAGGTAGA
Found at i:875995 original size:4 final size:4
Alignment explanation
Indices: 875986--876032 Score: 57
Period size: 4 Copynumber: 12.5 Consensus size: 4
875976 ATAAAAAAAG
875986 AATA AAT- AA-A AATA AATA AATA AATA AATA AAT- -ATA ATATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA A-ATA AATA
876031 AA
1 AA
876033 AACCATATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
2 2 0.05
3 4 0.11
4 28 0.74
5 4 0.11
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:875996 original size:14 final size:14
Alignment explanation
Indices: 875975--876032 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 14
875965 TTTTGGGCAT
*
875975 AATAAAAAAAGAATA
1 AATAAAAATA-AATA
875990 AATAAAAATAAATA
1 AATAAAAATAAATA
876004 AAT--AAATAAATA
1 AATAAAAATAAATA
*
876016 AATATAATATAAATA
1 AATA-AAAATAAATA
876031 AA
1 AA
876033 AACCATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
12 12 0.32
14 7 0.18
15 19 0.50
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (14 bp):
AATAAAAATAAATA
Found at i:876013 original size:22 final size:23
Alignment explanation
Indices: 875986--876032 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
875976 ATAAAAAAAG
875986 AATAAATAAAAATAA-ATAAATA
1 AATAAATAAAAATAATATAAATA
*
876008 AATAAATAAATATAATATAAATA
1 AATAAATAAAAATAATATAAATA
876031 AA
1 AA
876033 AACCATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (23 bp):
AATAAATAAAAATAATATAAATA
Found at i:876117 original size:37 final size:38
Alignment explanation
Indices: 876070--876392 Score: 407
Period size: 38 Copynumber: 8.6 Consensus size: 38
876060 AAAATATTTG
876070 TTTCAAAAACTA-ATATTATATATATTTTCAAAAAATGT
1 TTTC-AAAACTATATATTATATATATTTTCAAAAAATGT
* * * *
876108 TTTCAAAACTATACATTATATATACATTT-GAAAAATAT
1 TTTCAAAACTATATATTATATATA-TTTTCAAAAAATGT
876146 TTTCAAAACTATATA-T-TATATATTTTC-AAAAATGT
1 TTTCAAAACTATATATTATATATATTTTCAAAAAATGT
*
876181 TTTCCAAACTATATA-T-TATATATTTTCAAAAAATG-
1 TTTCAAAACTATATATTATATATATTTTCAAAAAATGT
*
876216 TTTCAAAACTATATATATTTTATATATTTTC-AAAAATGT
1 TTTCAAAAC--TATATATTATATATATTTTCAAAAAATGT
876255 TTTCAAAACTATATATTATATATATTTTC-AAAAATGT
1 TTTCAAAACTATATATTATATATATTTTCAAAAAATGT
876292 TTTCAAAACTATATATTATATATATTTTCAACAAAAT-T
1 TTTCAAAACTATATATTATATATATTTTCAA-AAAATGT
* *
876330 TCTCAAAACTATATATTATATATATTTTCGGAAAAAAATGC
1 TTTCAAAACTATATATTATATATATTTTC---AAAAAATGT
* *
876371 TTTCAACACTATATACTATATA
1 TTTCAAAACTATATATTATATA
876393 CATTATATGT
Statistics
Matches: 255, Mismatches: 15, Indels: 27
0.86 0.05 0.09
Matches are distributed among these distances:
35 44 0.17
36 13 0.05
37 70 0.27
38 74 0.29
39 28 0.11
40 5 0.02
41 21 0.08
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.43
Consensus pattern (38 bp):
TTTCAAAACTATATATTATATATATTTTCAAAAAATGT
Found at i:876239 original size:74 final size:76
Alignment explanation
Indices: 876070--876392 Score: 400
Period size: 74 Copynumber: 4.3 Consensus size: 76
876060 AAAATATTTG
* *
876070 TTTCAAAAACTA-ATATTATATATATTTTCAAAAAATGTTTTCAAAACTATACATTATATATACA
1 TTTC-AAAACTATATATTATATATATTTTCAAAAAATGTTTTCAAAACTATATATTATATATA-T
*
876134 TTTGAAAAATAT--
64 TTTCAAAAA-ATGC
*
876146 TTTCAAAACTATATA-T-TATATATTTTC-AAAAATGTTTTCCAAACTATATA-T-TATATATTT
1 TTTCAAAACTATATATTATATATATTTTCAAAAAATGTTTTCAAAACTATATATTATATATATTT
876206 TCAAAAAATG-
66 TCAAAAAATGC
*
876216 TTTCAAAACTATATATATTTTATATATTTTC-AAAAATGTTTTCAAAACTATATATTATATATAT
1 TTTCAAAAC--TATATATTATATATATTTTCAAAAAATGTTTTCAAAACTATATATTATATATAT
*
876280 TTTC-AAAAATGT
64 TTTCAAAAAATGC
*
876292 TTTCAAAACTATATATTATATATATTTTCAACAAAAT-TTCTCAAAACTATATATTATATATATT
1 TTTCAAAACTATATATTATATATATTTTCAA-AAAATGTTTTCAAAACTATATATTATATATATT
876356 TTCGGAAAAAAATGC
65 TTC---AAAAAATGC
* *
876371 TTTCAACACTATATACTATATA
1 TTTCAAAACTATATATTATATA
876393 CATTATATGT
Statistics
Matches: 222, Mismatches: 10, Indels: 27
0.86 0.04 0.10
Matches are distributed among these distances:
69 2 0.01
70 17 0.08
71 6 0.03
72 7 0.03
73 22 0.10
74 63 0.28
75 46 0.21
76 32 0.14
79 27 0.12
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.43
Consensus pattern (76 bp):
TTTCAAAACTATATATTATATATATTTTCAAAAAATGTTTTCAAAACTATATATTATATATATTT
TCAAAAAATGC
Found at i:876259 original size:12 final size:12
Alignment explanation
Indices: 876239--876299 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
876229 TATATTTTAT
876239 ATATTTTCAAAA
1 ATATTTTCAAAA
*
876251 ATGTTTTCAAAA
1 ATATTTTCAAAA
* * *
876263 CTATATATT-ATAT
1 --ATATTTTCAAAA
876276 ATATTTTCAAAA
1 ATATTTTCAAAA
*
876288 ATGTTTTCAAAA
1 ATATTTTCAAAA
876300 CTATATATTA
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
11 6 0.16
12 24 0.65
13 2 0.05
14 5 0.14
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.44
Consensus pattern (12 bp):
ATATTTTCAAAA
Found at i:887184 original size:22 final size:23
Alignment explanation
Indices: 887159--887233 Score: 84
Period size: 22 Copynumber: 3.4 Consensus size: 23
887149 CACATAGAAT
887159 GAAA-GAAAATTAAATTCAAAAG
1 GAAATGAAAATTAAATTCAAAAG
** * * *
887181 GAAATG-AAACGAAGTACAAAAT
1 GAAATGAAAATTAAATTCAAAAG
887203 GAAA-GAAAATTAAATTCAAAAG
1 GAAATGAAAATTAAATTCAAAAG
887225 GAAATGAAA
1 GAAATGAAA
887234 TGAAGTAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.85
23 5 0.12
ACGTcount: A:0.63, C:0.05, G:0.16, T:0.16
Consensus pattern (23 bp):
GAAATGAAAATTAAATTCAAAAG
Found at i:887204 original size:44 final size:43
Alignment explanation
Indices: 887156--887248 Score: 161
Period size: 44 Copynumber: 2.2 Consensus size: 43
887146 TCTCACATAG
887156 AATGAAAGAAAATTAAATTCAAAAGGAAATGAAACGAAGTACAA
1 AATGAAAGAAAATTAAATTCAAAAGGAAATGAAACGAAGTA-AA
*
887200 AATGAAAGAAAATTAAATTCAAAAGGAAATGAAATGAAGTAAA
1 AATGAAAGAAAATTAAATTCAAAAGGAAATGAAACGAAGTAAA
887243 AA-GAAA
1 AATGAAA
887249 TGTTTGCTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 4 0.08
43 4 0.08
44 40 0.83
ACGTcount: A:0.63, C:0.04, G:0.16, T:0.16
Consensus pattern (43 bp):
AATGAAAGAAAATTAAATTCAAAAGGAAATGAAACGAAGTAAA
Found at i:891000 original size:15 final size:15
Alignment explanation
Indices: 890980--891011 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
890970 TTGGAGATGT
890980 TAACGGTTAACCGAA
1 TAACGGTTAACCGAA
*
890995 TAACGGTTAATCGAA
1 TAACGGTTAACCGAA
891010 TA
1 TA
891012 TGAGGTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.25
Consensus pattern (15 bp):
TAACGGTTAACCGAA
Found at i:891877 original size:11 final size:11
Alignment explanation
Indices: 891859--891901 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
891849 AATTATCTAC
891859 AAAATAAAATA
1 AAAATAAAATA
*
891870 AGAATAAAATA
1 AAAATAAAATA
**
891881 AAAATAAAGGA
1 AAAATAAAATA
891892 AAAATAAAAT
1 AAAATAAAAT
891902 TATTATTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:891884 original size:17 final size:17
Alignment explanation
Indices: 891859--891900 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
891849 AATTATCTAC
891859 AAAAT-AAAAT-AAGAA
1 AAAATAAAAATAAAGAA
*
891874 TAAAATAAAAATAAAGGA
1 -AAAATAAAAATAAAGAA
891892 AAAATAAAA
1 AAAATAAAA
891901 TTATTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 5 0.22
17 14 0.61
18 4 0.17
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (17 bp):
AAAATAAAAATAAAGAA
Found at i:904196 original size:21 final size:22
Alignment explanation
Indices: 904163--904207 Score: 83
Period size: 21 Copynumber: 2.1 Consensus size: 22
904153 TGTTCGAAGT
904163 AAAGAGCCTTCAGTGTTTACAC
1 AAAGAGCCTTCAGTGTTTACAC
904185 AAAGAG-CTTCAGTGTTTACAC
1 AAAGAGCCTTCAGTGTTTACAC
904206 AA
1 AA
904208 GTCTTCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (22 bp):
AAAGAGCCTTCAGTGTTTACAC
Done.