Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000761.1 Hibiscus syriacus cultivar Beakdansim tig00001478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5609167
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 23
Found at i:1667141 original size:15 final size:15
Alignment explanation
Indices: 1667118--1667149 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1667108 AATAATGAAT
1667118 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
1667133 AATGCATGTATGCAA
1 AATGAATGTATGCAA
1667148 AA
1 AA
1667150 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:1671037 original size:23 final size:26
Alignment explanation
Indices: 1670988--1671043 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 26
1670978 TATAATTTTG
*
1670988 AGAAAAAAAATAATTTATATATATTT
1 AGAAATAAAATAATTTATATATATTT
*
1671014 ATAAATAAAAT-ATTTAT-T-TATTT
1 AGAAATAAAATAATTTATATATATTT
1671037 AGAAATA
1 AGAAATA
1671044 TCAGAAAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.41
24 1 0.04
25 6 0.22
26 9 0.33
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (26 bp):
AGAAATAAAATAATTTATATATATTT
Found at i:1672678 original size:3 final size:3
Alignment explanation
Indices: 1672672--1672732 Score: 72
Period size: 3 Copynumber: 21.0 Consensus size: 3
1672662 TATTTTTTTT
* * *
1672672 TAA TAA TAA TAA -AA T-A TAA TAA TTA TAA TAA TAA TTA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
1672718 TTA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
1672733 AATGGGTAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
2 4 0.08
3 45 0.92
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:1672704 original size:12 final size:12
Alignment explanation
Indices: 1672672--1672730 Score: 82
Period size: 12 Copynumber: 4.8 Consensus size: 12
1672662 TATTTTTTTT
*
1672672 TAATAATAATAA
1 TAATAATAATTA
*
1672684 AATATAATAATTA
1 TA-ATAATAATTA
1672697 TAATAATAATTA
1 TAATAATAATTA
*
1672709 TGATAATAATTA
1 TAATAATAATTA
1672721 TAATAATAAT
1 TAATAATAAT
1672731 AAAATGGGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
12 31 0.76
13 10 0.24
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (12 bp):
TAATAATAATTA
Found at i:1679657 original size:196 final size:196
Alignment explanation
Indices: 1679153--1679737 Score: 917
Period size: 185 Copynumber: 3.0 Consensus size: 196
1679143 TGAATTACTT
1679153 GTTTAAAAGAAAATCCTTTTACTCGATAAGAGATCTTGAAATTCACAATCCTCCGTCGGGAAAGA
1 GTTTAAAAGAAAATCCTTTTACTCGATAAGAGATCTTGAAATTCACAATCCTCCGTCGGGAAAGA
* *
1679218 TATCTCAACTATTTCTCATTCGTAAAAGAATATTCCTTCATTTCTTTGAAAATGTGAATCGAATT
66 TATCTCAACTATTTCTCATTCGTAAAAGAATATTCCTTCATTGCTTTGAAAACGTGAATCGAATT
* * *
1679283 AAAAAAATAAACGTTTACATTTACATCAAAT-AAATTAATTGTTGGTTAAAACATCACACATTAC
131 AAAAAAATCAACGTTTACATTTACATCAAATAAAATAAATTGTTAGTTAAAACATCACACATTAC
1679347 A
196 A
** *
1679348 -TATTAAAAGAAAGCCCTTTTACTCCATAAGAGATCTTG------A-AA---TCCGTCGGGAAAG
1 GT-TTAAAAGAAAATCCTTTTACTCGATAAGAGATCTTGAAATTCACAATCCTCCGTCGGGAAAG
* *
1679402 TTATCTCAACTATTTCTCATTTGTAAAAGAATATTCCTTCATTGCTTTGAAAACGTGAATCGAAT
65 ATATCTCAACTATTTCTCATTCGTAAAAGAATATTCCTTCATTGCTTTGAAAACGTGAATCGAAT
* *
1679467 TAAAAAAATCAACGTTTACATTTACATCAAGTAAAATAAATTGTTAGTTAAAACAACACACATTA
130 TAAAAAAATCAACGTTTACATTTACATCAAATAAAATAAATTGTTAGTTAAAACATCACACATTA
1679532 CA
195 CA
* *
1679534 GTTTAAAAGAAAATCCTTTTACTCGATAAGAGATCTTGAAATTCACAATCCTCCGTCGAGAAAGC
1 GTTTAAAAGAAAATCCTTTTACTCGATAAGAGATCTTGAAATTCACAATCCTCCGTCGGGAAAGA
*
1679599 TATCTCAACTATTTCTCATTCGTAAAAGAATATTCCTTCGTTGCTTTGAAAACGTGAATCGAATT
66 TATCTCAACTATTTCTCATTCGTAAAAGAATATTCCTTCATTGCTTTGAAAACGTGAATCGAATT
1679664 AAAAAAAATCAACGTTTACATTTACATCAAATAAAATAAATTGTTAGTT-AAACATCACACATTA
131 -AAAAAAATCAACGTTTACATTTACATCAAATAAAATAAATTGTTAGTTAAAACATCACACATTA
1679728 CA
195 CA
*
1679730 GATTAAAA
1 GTTTAAAA
1679738 TACAAACAAT
Statistics
Matches: 354, Mismatches: 22, Indels: 27
0.88 0.05 0.07
Matches are distributed among these distances:
185 104 0.29
186 64 0.18
187 1 0.00
188 2 0.01
189 1 0.00
192 1 0.00
193 2 0.01
194 1 0.00
195 33 0.09
196 98 0.28
197 47 0.13
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (196 bp):
GTTTAAAAGAAAATCCTTTTACTCGATAAGAGATCTTGAAATTCACAATCCTCCGTCGGGAAAGA
TATCTCAACTATTTCTCATTCGTAAAAGAATATTCCTTCATTGCTTTGAAAACGTGAATCGAATT
AAAAAAATCAACGTTTACATTTACATCAAATAAAATAAATTGTTAGTTAAAACATCACACATTAC
A
Found at i:1687934 original size:4 final size:4
Alignment explanation
Indices: 1687925--1687950 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
1687915 ATTTGTACAA
1687925 TTAG TTAG TTAG TTAG TTAG TTAG TT
1 TTAG TTAG TTAG TTAG TTAG TTAG TT
1687951 GGTTTTGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (4 bp):
TTAG
Found at i:1690243 original size:20 final size:20
Alignment explanation
Indices: 1690220--1690271 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
1690210 AACGCGATCC
1690220 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
1690240 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
1690260 CCAAAATCGCAA
1 CCAGAATCGCAA
1690272 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:1690352 original size:20 final size:20
Alignment explanation
Indices: 1690327--1690520 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
1690317 GATTTTCCAT
* *
1690327 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
1690347 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
1690367 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
1690387 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
1690407 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
1690427 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
1690447 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
1690467 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
1690488 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
1690508 AATCGCAACGCGA
1 AATCGCAACGCGA
1690521 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:1690372 original size:40 final size:39
Alignment explanation
Indices: 1690323--1690520 Score: 200
Period size: 40 Copynumber: 5.0 Consensus size: 39
1690313 TTGCGATTTT
* ** *
1690323 CCAT-AATCGCAACGCGAATATGAAAATCGCAACGCGAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
* *
1690361 CACATAAATCGCAACGCGTATCCGTAAATCGCAACGTGTAT
1 C-CATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* ** * *
1690402 CCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTAT
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* * **
1690442 CCGTATATCGCAACGCGTATCCGTAAATCGCAACGATAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
*
1690481 TACATAAAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 -CCAT-AAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1690521 TATTTAAAGC
Statistics
Matches: 132, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 94 0.71
41 33 0.25
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (39 bp):
CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
Found at i:1690410 original size:60 final size:60
Alignment explanation
Indices: 1690327--1690519 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
1690317 GATTTTCCAT
* ** * *
1690327 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
1690387 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* **
1690447 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
1690508 AATCGCAACGCG
1 AATCGCAACGCG
1690520 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 80 0.72
61 31 0.28
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:1691546 original size:12 final size:12
Alignment explanation
Indices: 1691529--1691553 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1691519 TCTTCGGGGA
1691529 CTTTTTCTTCTT
1 CTTTTTCTTCTT
1691541 CTTTTTCTTCTT
1 CTTTTTCTTCTT
1691553 C
1 C
1691554 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:1691762 original size:24 final size:24
Alignment explanation
Indices: 1691728--1691774 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1691718 CTGAAACATC
1691728 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
1691752 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
1691775 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:1692485 original size:20 final size:20
Alignment explanation
Indices: 1692457--1692845 Score: 457
Period size: 20 Copynumber: 19.4 Consensus size: 20
1692447 AAATTTAAGT
* * * *
1692457 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
1692477 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
1692497 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
1692517 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
1692537 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
1692557 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
1692577 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
1692597 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
1692617 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
1692637 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
1692657 GTTGC-AGTTTACGGATACGC
1 GTTGCGA-TTTACGGATACGC
1692677 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
1692697 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
1692717 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
1692737 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
1692757 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
1692777 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* *
1692797 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
1692817 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
1692837 GTTGCGATT
1 GTTGCGATT
1692846 ATGGAAAATC
Statistics
Matches: 329, Mismatches: 30, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
19 6 0.02
20 317 0.96
21 6 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:1702945 original size:16 final size:15
Alignment explanation
Indices: 1702904--1702945 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
1702894 CTTAAATTAT
1702904 ATATTATTTTAAATA
1 ATATTATTTTAAATA
1702919 AT-TATATTTTTACAATA
1 ATAT-TA-TTTTA-AATA
1702936 ATATTATTTT
1 ATATTATTTT
1702946 TCATCTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 1 0.04
15 4 0.17
16 9 0.39
17 8 0.35
18 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATTATTTTAAATA
Found at i:1702946 original size:17 final size:16
Alignment explanation
Indices: 1702904--1702946 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
1702894 CTTAAATTAT
1702904 ATATTA-TTTTAAATA
1 ATATTATTTTTAAATA
1702919 AT-TATATTTTTACAATA
1 ATAT-TATTTTTA-AATA
1702936 ATATTATTTTT
1 ATATTATTTTT
1702947 CATCTCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 1 0.04
15 4 0.17
16 5 0.21
17 13 0.54
18 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
ATATTATTTTTAAATA
Found at i:1703972 original size:44 final size:46
Alignment explanation
Indices: 1703880--1703981 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 46
1703870 CCATTCAACA
* * *
1703880 GGTACCGATACCCTCTCAAACGAGAAGAATTACAAAATGTCATAAG
1 GGTACCGATACCCCCTCAAACGAGAAAAATTACAAAATGCCATAAG
** * *
1703926 GGTACCGATACCCCCTTGAAC-A-AAAAATTACAGAATGCCATGAG
1 GGTACCGATACCCCCTCAAACGAGAAAAATTACAAAATGCCATAAG
1703970 GGTACCGATACC
1 GGTACCGATACC
1703982 TTAAGTAGGG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 30 0.61
45 1 0.02
46 18 0.37
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (46 bp):
GGTACCGATACCCCCTCAAACGAGAAAAATTACAAAATGCCATAAG
Found at i:1704308 original size:28 final size:28
Alignment explanation
Indices: 1704275--1704360 Score: 172
Period size: 28 Copynumber: 3.1 Consensus size: 28
1704265 ATTCATCTCA
1704275 TATTATGAAACATAATGGGAATTCATAC
1 TATTATGAAACATAATGGGAATTCATAC
1704303 TATTATGAAACATAATGGGAATTCATAC
1 TATTATGAAACATAATGGGAATTCATAC
1704331 TATTATGAAACATAATGGGAATTCATAC
1 TATTATGAAACATAATGGGAATTCATAC
1704359 TA
1 TA
1704361 AGTGCATTGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (28 bp):
TATTATGAAACATAATGGGAATTCATAC
Found at i:1704720 original size:23 final size:23
Alignment explanation
Indices: 1704667--1704727 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
1704657 ACATCTTATA
* * *
1704667 TGGCACTACGATGCAATTCTATG
1 TGGCACTTCGGTGCAATTCTACG
* **
1704690 CGATACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
1704713 TGGCACTTCGGTGCA
1 TGGCACTTCGGTGCA
1704728 TTTATACGAG
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.30
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:1709382 original size:29 final size:28
Alignment explanation
Indices: 1709350--1709409 Score: 68
Period size: 30 Copynumber: 2.0 Consensus size: 28
1709340 ATATTAAAGC
*
1709350 AAGATAAATGAAAA-CACTAAAATTAAATA
1 AAGA-AAATAAAAAGCA-TAAAATTAAATA
1709379 AAGAAAATAAAAAGTGCATAAAATTAAATA
1 AAGAAAATAAAAA--GCATAAAATTAAATA
1709409 A
1 A
1709410 CATAAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
28 8 0.30
29 4 0.15
30 13 0.48
31 2 0.07
ACGTcount: A:0.67, C:0.05, G:0.08, T:0.20
Consensus pattern (28 bp):
AAGAAAATAAAAAGCATAAAATTAAATA
Found at i:1709417 original size:30 final size:29
Alignment explanation
Indices: 1709367--1709435 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
1709357 ATGAAAACAC
1709367 TAAAATTAAATAAAGAAAATAAAAAGTGC-A
1 TAAAATTAAATAAAGAAAAT--AAAGTGCAA
*
1709397 TAAAATTAAATAACA-TAAATAAAGTGCAA
1 TAAAATTAAATAA-AGAAAATAAAGTGCAA
*
1709426 TAAAAATAAA
1 TAAAATTAAA
1709436 ATGTTAGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 7 0.20
29 10 0.29
30 17 0.49
31 1 0.03
ACGTcount: A:0.67, C:0.04, G:0.07, T:0.22
Consensus pattern (29 bp):
TAAAATTAAATAAAGAAAATAAAGTGCAA
Found at i:1709590 original size:19 final size:19
Alignment explanation
Indices: 1709566--1709603 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
1709556 AAGGTTAACA
1709566 ATTAGTAATTAGTGGTTAG
1 ATTAGTAATTAGTGGTTAG
*
1709585 ATTAGTAGTTAGTGGTTAG
1 ATTAGTAATTAGTGGTTAG
1709604 CAGAGTCTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
ATTAGTAATTAGTGGTTAG
Found at i:1709793 original size:114 final size:113
Alignment explanation
Indices: 1709593--1709801 Score: 305
Period size: 114 Copynumber: 1.8 Consensus size: 113
1709583 AGATTAGTAG
* * * *
1709593 TTAGTGGTTAGCAGAGTCTGAACCATAATAATGTGGATCATACACCGGATCGGGTCACCACAAGG
1 TTAGTGGTTAGCAGAGTATGAACCATAATAATATGGATCATACACCGAATCGGGTCACCACAAAG
1709658 TCGAATCGAATAATTCAAACAAATAAATAAAAATAAAAAAATAAAAAAA
66 TCGAATCGAATAATTCAAAC-AATAAATAAAAATAAAAAAATAAAAAAA
* * *
1709707 TTAGTGGTTAGTAGAGTATGTACCATAATAATATGGATCATAC-CTTGAATCGGGTCACCACAAA
1 TTAGTGGTTAGCAGAGTATGAACCATAATAATATGGATCATACAC-CGAATCGGGTCACCACAAA
*
1709771 GTCGAATCGAAT-ATTAGAAACAATAAATAAA
65 GTCGAATCGAATAATT-CAAACAATAAATAAA
1709802 TAGCAGTGGT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
113 14 0.16
114 71 0.84
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.24
Consensus pattern (113 bp):
TTAGTGGTTAGCAGAGTATGAACCATAATAATATGGATCATACACCGAATCGGGTCACCACAAAG
TCGAATCGAATAATTCAAACAATAAATAAAAATAAAAAAATAAAAAAA
Found at i:1711208 original size:139 final size:139
Alignment explanation
Indices: 1711001--1711782 Score: 963
Period size: 139 Copynumber: 5.6 Consensus size: 139
1710991 ATCTGGAGAC
* * * * *** *
1711001 AATTTGGTGATAACACGATTCCTACGTGATGAGGAAGTTTGATTATTTGAGGATGACACTGCTCC
1 AATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGATTGCCTGAGGATGACGCTGCTCC
* * * * * **
1711066 TACGCGTTGAGGAAATATGGTCGATGGACGACATTATTCTTACGTGATGAGGACGTTTAGTTGTC
66 TACGCGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCTTACGTGATGAGGACGTCTAGCCGTC
1711131 TTTAGGGAT
131 TTTAGGGAT
* * * * * *
1711140 ACTTTGGAGACAACACGGTTCATACGTGATGAGGAAGTCTGATTGCCTAAGGATGATGCTACTTC
1 AATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGATTGCCTGAGGATGACGCTGCTCC
* * *
1711205 TACGAGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCTTACGTGATGAGGACGTCTAGCTGAC
66 TACGCGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCTTACGTGATGAGGACGTCTAGCCGTC
1711270 TTTAGGGAT
131 TTTAGGGAT
* * *
1711279 AATTTGGAGATAACACAGTTCCTACGTGATGAGGAAGTCTGATTGCCTGAGGATGACGCTGCTCT
1 AATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGATTGCCTGAGGATGACGCTGCTCC
** * *
1711344 TACGCAATGAGGAGATCTGGTCGGTGGACGACATTGTTCCTGCGTGATGAGGACGTCTAGCCGTC
66 TACGCGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCTTACGTGATGAGGACGTCTAGCCGTC
1711409 TTTAGGGAT
131 TTTAGGGAT
* * * *
1711418 AATATGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGATTGCTTGAGGATGACGATACTCC
1 AATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGATTGCCTGAGGATGACGCTGCTCC
* * * * * * *
1711483 TACGCGTTAAGTAGATCTGGTCGGTGGACGACTTTGTTCCTACATGATGAGGTCGTCTGGCCGTC
66 TACGCGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCTTACGTGATGAGGACGTCTAGCCGTC
1711548 TTTAGGGAT
131 TTTAGGGAT
* * ** *
1711557 AATTTGGGGACAACACGGTTCCTACGTGATAAGGAAGTCTGATTATCTGAGGATGACACTGCTCC
1 AATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGATTGCCTGAGGATGACGCTGCTCC
* * * * * *
1711622 TACACGTTGAGGAGATCTGGTAGGTGGACGACATTATTTCTT-CATGATGAGGACGTCCAGTCGT
66 TACGCGTTGAGGAGATCTGGTCGGTGGACGACATT-GTTCTTACGTGATGAGGACGTCTAGCCGT
1711686 CTTTAGGGAT
130 CTTTAGGGAT
* * ** * * **
1711696 AATTTAGAGACAACACGGTTCCAACGTGATGAGGGCGTCTGATAGTCTGAGGATGAAACTGCTCC
1 AATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGATTGCCTGAGGATGACGCTGCTCC
* * **
1711761 TATGCATTGAAAAGATCTGGTC
66 TACGCGTTGAGGAGATCTGGTC
1711783 ATGGTTTCCA
Statistics
Matches: 553, Mismatches: 89, Indels: 2
0.86 0.14 0.00
Matches are distributed among these distances:
139 549 0.99
140 4 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (139 bp):
AATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGATTGCCTGAGGATGACGCTGCTCC
TACGCGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCTTACGTGATGAGGACGTCTAGCCGTC
TTTAGGGAT
Found at i:1712083 original size:67 final size:67
Alignment explanation
Indices: 1711907--1712280 Score: 452
Period size: 67 Copynumber: 5.6 Consensus size: 67
1711897 CAAAGAAATT
* * * * * * * * *
1711907 TGTTTCAAGAGAAGCTATCTCAGGTGAGATATAA-TTGTATTTCGAGTGAAAC-ATTTCAAA-AT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTT-TATTTCGAGAGAAACAATCTCAAAGGT
*
1711969 TTG
65 TTA
* * * * * *
1711972 TGTTTCAAGGGAAAATTATCTCAAGCGAGATAAAACTTTTTTTCGAGAGAAACAATCTCAATGGT
1 TGTTTCAAGAG-AAACTGTCTCAAGCGAGACAAAACTTTATTTCGAGAGAAACAATCTCAAAGGT
1712037 TTA
65 TTA
* *
1712040 TGTTTCAAGAGAAACTGTCTTAAGCAAGACAAAACTTTATTTCGAGAGAAACAATCTCAAAGGTT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTATTTCGAGAGAAACAATCTCAAAGGTT
1712105 TA
66 TA
* * * * * *
1712107 TGTTTCAAGTGAAACTATCTCAAGCGAGAAAAAAGTTTGTTTCGAGAGAAAAAATCTCAAAGGTT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTATTTCGAGAGAAACAATCTCAAAGGTT
1712172 TA
66 TA
* *
1712174 TGTTTCAAGAGAAACTGTCTCAAGCGACACAAAACTTTGTTTCGAGAGAAACAATCTCAAA-GTT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTATTTCGAGAGAAACAATCTCAAAGGTT
1712238 TA
66 TA
*
1712240 TGTTTCAAGTGAAACTGTCTCAAGCGAGACAAAA-TTTATTT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTATTT
1712281 TTAGGAAAAC
Statistics
Matches: 268, Mismatches: 37, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
65 16 0.06
66 68 0.25
67 171 0.64
68 13 0.05
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (67 bp):
TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTATTTCGAGAGAAACAATCTCAAAGGTT
TA
Found at i:1714371 original size:44 final size:44
Alignment explanation
Indices: 1714308--1714482 Score: 253
Period size: 44 Copynumber: 4.0 Consensus size: 44
1714298 TCTTGTACTC
* * *
1714308 CTGGATTATATGGGTCTTCAAAAATGCCCCAACATTTATCATTT
1 CTGGATGATATGGGCCTTCAAAAATGCCCCAACACTTATCATTT
*
1714352 CTGGATGATATGGGCCTTCAAAAATGCCACAACACTTATCATTT
1 CTGGATGATATGGGCCTTCAAAAATGCCCCAACACTTATCATTT
* *
1714396 ATGGATGATATGGGCCTTCAAAAATGCCCCAACACATATCATTT
1 CTGGATGATATGGGCCTTCAAAAATGCCCCAACACTTATCATTT
* * * *
1714440 CTGGATGATATGAGACTTCAGAAATGCCCTAACACTTAT-ATTT
1 CTGGATGATATGGGCCTTCAAAAATGCCCCAACACTTATCATTT
1714483 TTTGGCTTCA
Statistics
Matches: 118, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
43 4 0.03
44 114 0.97
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31
Consensus pattern (44 bp):
CTGGATGATATGGGCCTTCAAAAATGCCCCAACACTTATCATTT
Found at i:1714645 original size:31 final size:30
Alignment explanation
Indices: 1714622--1714686 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 30
1714612 TTTGATTTAA
1714622 ATATTATATTCGATTCAATTATTTGAATATT
1 ATATTATATTCGATTCAATTATTTG-ATATT
*
1714653 ATATTATATTCGATTCAATTAATTGAATATT
1 ATATTATATTCGATTCAATTATTTG-ATATT
1714684 ATA
1 ATA
1714687 AATATTACTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.49
Consensus pattern (30 bp):
ATATTATATTCGATTCAATTATTTGATATT
Found at i:1722893 original size:16 final size:15
Alignment explanation
Indices: 1722858--1722904 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 15
1722848 ATTTTGATAG
1722858 ATTTATGTGTTTTGGAT
1 ATTT-TGTGTTTT-GAT
1722875 ATTTTGTTGTTTTGAT
1 ATTTTG-TGTTTTGAT
1722891 ATTTTGTGTTTTGA
1 ATTTTGTGTTTTGA
1722905 ATGTTTGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.28
16 11 0.38
17 10 0.34
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.64
Consensus pattern (15 bp):
ATTTTGTGTTTTGAT
Found at i:1722918 original size:14 final size:16
Alignment explanation
Indices: 1722899--1722935 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
1722889 ATATTTTGTG
*
1722899 TTTTGAATG-TTTG-A
1 TTTTGAATGATTAGTA
1722913 TTTTGAATGATTAGTA
1 TTTTGAATGATTAGTA
1722929 TTTTGAA
1 TTTTGAA
1722936 CTTAATTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 9 0.45
15 3 0.15
16 8 0.40
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (16 bp):
TTTTGAATGATTAGTA
Found at i:1723328 original size:18 final size:18
Alignment explanation
Indices: 1723291--1723328 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1723281 TTTTAAGATT
*
1723291 TTATATTCGATTTAAATA
1 TTATATTCGATTCAAATA
*
1723309 TTATATTCGATTCAATTA
1 TTATATTCGATTCAAATA
1723327 TT
1 TT
1723329 CGAATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (18 bp):
TTATATTCGATTCAAATA
Found at i:1725065 original size:4 final size:4
Alignment explanation
Indices: 1725056--1725553 Score: 925
Period size: 4 Copynumber: 125.8 Consensus size: 4
1725046 CAGCCTGATT
1725056 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1725104 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1725152 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1725200 ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1725246 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1725294 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1725341 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1725389 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1725435 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
1725483 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
1725531 ATAC GTAC ATAT GTAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATA
1725554 TATATATAGT
Statistics
Matches: 481, Mismatches: 8, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
2 4 0.01
3 3 0.01
4 474 0.99
ACGTcount: A:0.50, C:0.25, G:0.01, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:1726222 original size:21 final size:21
Alignment explanation
Indices: 1726176--1726222 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
1726166 AAACTCTCCT
* *
1726176 AATTTTTATTATATTAGATTT
1 AATTTTTATTACATTAGATTA
*
1726197 CATTTTTATTACA-TAGAATTA
1 AATTTTTATTACATTAG-ATTA
1726218 AATTT
1 AATTT
1726223 AAACTTTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.55
Consensus pattern (21 bp):
AATTTTTATTACATTAGATTA
Found at i:1728120 original size:111 final size:111
Alignment explanation
Indices: 1727926--1728143 Score: 355
Period size: 111 Copynumber: 2.0 Consensus size: 111
1727916 CAGATCACAT
* *
1727926 TTGTAGATGGACCATCCTGCATCTTTTACCACCGAAGAGTATTCTCCTCTTCCCGAGCTCGTTTC
1 TTGTAGATGGACCATCCTGCATCTTTTACAACCGAAGAGTATTCTCCTCTTCCCGAGATCGTTTC
*
1727991 CTTGGTGATCAACGCTTCAGCTCCAAATACGAAATTATCATCCTAC
66 CTTGGTGATCAACGCTTCAGCTCCAAATACGAAAGTATCATCCTAC
** * *
1728037 TTGTAGATGGACGGTCCTGCATCTTTTACAACCGACGAGTATTCTGCTCTTCCCGAGATCGTTTC
1 TTGTAGATGGACCATCCTGCATCTTTTACAACCGAAGAGTATTCTCCTCTTCCCGAGATCGTTTC
* *
1728102 CTTGGTGATCAATGCTTCAGCTCCGAATACGAAAGTATCATC
66 CTTGGTGATCAACGCTTCAGCTCCAAATACGAAAGTATCATC
1728144 TTGTAGGTAT
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
111 98 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.32
Consensus pattern (111 bp):
TTGTAGATGGACCATCCTGCATCTTTTACAACCGAAGAGTATTCTCCTCTTCCCGAGATCGTTTC
CTTGGTGATCAACGCTTCAGCTCCAAATACGAAAGTATCATCCTAC
Found at i:1728632 original size:2 final size:2
Alignment explanation
Indices: 1728625--1728657 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1728615 TTGTCATTCC
1728625 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1728658 TAAAAATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1729420 original size:42 final size:43
Alignment explanation
Indices: 1729373--1729665 Score: 250
Period size: 42 Copynumber: 7.0 Consensus size: 43
1729363 TTTTTATTGG
*
1729373 TCTTAATTTTTTCAATCT-ACTTTTTACCTTTATAATCGAGAC
1 TCTTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGAC
* *
1729415 TCTTAATTTTTT-AATCAT-A-TTTTCTACCATTATGATTGAGAC
1 TCTTAATTTTTTCAATC-TCACTTTT-TACCTTTATAATTGAGAC
* * * * *
1729457 CCCTAATTTTTT-AATCTCACATTTT-CCTTTATAATTAAGTC
1 TCTTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGAC
* * * * * *
1729498 CCCTAA-TTTTTCATTCTCATTTTTTATCTTTATAATTGAGGC
1 TCTTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGAC
** * *
1729540 -AATAA-TTTTTCTAATCTCACTTTTTATCTTTATAATAGATG-C
1 TCTTAATTTTTTC-AATCTCACTTTTTACCTTTATAATTGA-GAC
* *
1729582 TCTTAAGTTTTTCAATCAT-ACTTTTTACCTTTATAATTGAGGC
1 TCTTAATTTTTTCAATC-TCACTTTTTACCTTTATAATTGAGAC
* *
1729625 -CTTAATTTTTTTCAATCTCACTTTCTACTTTTATAATTGAG
1 TCTTAA-TTTTTTCAATCTCACTTTTTACCTTTATAATTGAG
1729666 GCAACTAATT
Statistics
Matches: 209, Mismatches: 28, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
40 5 0.02
41 46 0.22
42 90 0.43
43 61 0.29
44 7 0.03
ACGTcount: A:0.26, C:0.17, G:0.06, T:0.51
Consensus pattern (43 bp):
TCTTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGAC
Found at i:1729520 original size:83 final size:83
Alignment explanation
Indices: 1729376--1729661 Score: 226
Period size: 83 Copynumber: 3.4 Consensus size: 83
1729366 TTATTGGTCT
* * * *
1729376 TAATTTTTTCAATCT-ACTTTTTACCTTTATAATCGAGACTCTTAATTTTTTAATCATATTTTCT
1 TAATTTTTT-AATCTCACTTTTTACCTTTATAATCAAGACCCCTAATTTTTCAATCATATTTTCT
* **
1729440 ACCATTATGATTGAGACCCC
65 ACCATTATAATTGAG-CCAA
* * * * *
1729460 TAATTTTTTAATCTCACATTTT-CCTTTATAATTAAGTCCCCTAATTTTTCATTC-TCATTTTTT
1 TAATTTTTTAATCTCACTTTTTACCTTTATAATCAAGACCCCTAATTTTTCAATCAT-ATTTTCT
* * *
1729523 ATCTTTATAATTGAGGCAA
65 ACCATTATAATTGAGCCAA
* * *
1729542 TAATTTTTCTAATCTCACTTTTTATCTTTATAAT--AGATGCTCTTAAGTTTTTCAATCATACTT
1 TAATTTTT-TAATCTCACTTTTTACCTTTATAATCAAGA--CCCCTAA-TTTTTCAATCATA-TT
* *
1729605 TT-TACCTTTATAATTGAGGCC-T
61 TTCTACCATTATAATTGA-GCCAA
* *
1729627 TAATTTTTTTCAATCTCACTTTCTACTTTTATAAT
1 TAA-TTTTTT-AATCTCACTTTTTACCTTTATAAT
1729662 TGAGGCAACT
Statistics
Matches: 163, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
82 12 0.07
83 61 0.37
84 29 0.18
85 28 0.17
86 33 0.20
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (83 bp):
TAATTTTTTAATCTCACTTTTTACCTTTATAATCAAGACCCCTAATTTTTCAATCATATTTTCTA
CCATTATAATTGAGCCAA
Found at i:1730367 original size:24 final size:24
Alignment explanation
Indices: 1730335--1730415 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
1730325 AAATATATAT
*
1730335 ATAATTATTAAATATTAAATAAAA
1 ATAAGTATTAAATATTAAATAAAA
** * *
1730359 ATAAGTATT-TTTA-AAAATATATAT
1 ATAAGTATTAAATATTAAATA-A-AA
*
1730383 ATAATTATTAAATATTAAATAAAA
1 ATAAGTATTAAATATTAAATAAAA
1730407 ATAAGTATT
1 ATAAGTATT
1730416 TTTAAAAAAT
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
22 5 0.12
23 3 0.07
24 26 0.62
25 3 0.07
26 5 0.12
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (24 bp):
ATAAGTATTAAATATTAAATAAAA
Found at i:1730379 original size:48 final size:48
Alignment explanation
Indices: 1730325--1730434 Score: 204
Period size: 48 Copynumber: 2.3 Consensus size: 48
1730315 AAAAACTTAT
1730325 AAATATATATATAATTATTAAATATTAAATAAAAATAAGTATTTTTAA
1 AAATATATATATAATTATTAAATATTAAATAAAAATAAGTATTTTTAA
1730373 AAATATATATATAATTATTAAATATTAAATAAAAATAAGTATTTTTAA
1 AAATATATATATAATTATTAAATATTAAATAAAAATAAGTATTTTTAA
1730421 AAA-ATATAATATAA
1 AAATATAT-ATATAA
1730435 ATGAATTTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
47 4 0.07
48 57 0.93
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (48 bp):
AAATATATATATAATTATTAAATATTAAATAAAAATAAGTATTTTTAA
Found at i:1732316 original size:31 final size:31
Alignment explanation
Indices: 1732281--1732345 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
1732271 AACTCTTTGA
1732281 TGTTGGTAGATTGATTCAATATGTTTCTTGT
1 TGTTGGTAGATTGATTCAATATGTTTCTTGT
*
1732312 TGTTGGTATATTGATTCAATATGTTTCTTGT
1 TGTTGGTAGATTGATTCAATATGTTTCTTGT
1732343 TGT
1 TGT
1732346 CCTTGAGCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.18, C:0.06, G:0.22, T:0.54
Consensus pattern (31 bp):
TGTTGGTAGATTGATTCAATATGTTTCTTGT
Found at i:1738729 original size:180 final size:178
Alignment explanation
Indices: 1738497--1738981 Score: 627
Period size: 180 Copynumber: 2.7 Consensus size: 178
1738487 GACAAGAAAC
* * * *
1738497 AATTGTCACAACAAATAATGAGATTCAATATTTTTA-TGACAATTTTTGTTTGTAGTTATATATT
1 AATTATCACAACAAATATTGAGATTCAA-ATTTTTAGTGA-AAATTATGTTTGTAGTTATATATT
* * *
1738561 TTAATTATAATGACAAAATATATAGTCACAAATCTTTTCTTCCAGTTTTTGGTACAAAAACAAAA
64 TTAATTATAGTGACAAAATATATAGTCACAAAT-TTTTC-TCCAATTTTTGGCACAAAAACAAAA
*
1738626 GTTATA-AAGTGACATGTTTTGTAACTATAACTTATAATTATTGTTACT-AAAA
127 GTTATAGAA-TGACATGTATTGTAACTATAACTTATAATTATTGTTA-TAAAAA
**
1738678 AATTATCACAACAAATATTGAGATTCAAATTTTTAGTGATTATTATGTTTGTAGTTATATATTTT
1 AATTATCACAACAAATATTGAGATTCAAATTTTTAGTGAAAATTATGTTTGTAGTTATATATTTT
* * *
1738743 AATTGTAGTGACAAAATGTATAGTCACAAATGTTTTCCTCCAATTTTTGGCGCAAAAACAAAAGT
66 AATTATAGTGACAAAATATATAGTCACAAAT-TTTT-CTCCAATTTTTGGCACAAAAACAAAAGT
*
1738808 TGTAGAATGACATGTATTGTAACTATAACTTATAATTATTGTTATAGAAAAA
129 TATAGAATGACATGTATTGTAACTATAACTTATAATTATTGTTAT--AAAAA
* * * * *
1738860 AATTATAACAACAAATATTGAGATTTAAATTTTTGGTGAAAAATTATGTTTGTTGATATATATTT
1 AATTATCACAACAAATATTGAGATTCAAATTTTTAGTG-AAAATTATGTTTGTAGTTATATATTT
* * * *
1738925 TAATTATAGTGA-GAAATATATTGTCATAAATATTTCTCTCAATTTTTGGCACAAAAA
65 TAATTATAGTGACAAAATATATAGTCACAAATTTTTCTC-CAATTTTTGGCACAAAAA
1738982 AGTTATATAC
Statistics
Matches: 267, Mismatches: 29, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
179 1 0.00
180 127 0.48
181 52 0.19
182 54 0.20
183 33 0.12
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (178 bp):
AATTATCACAACAAATATTGAGATTCAAATTTTTAGTGAAAATTATGTTTGTAGTTATATATTTT
AATTATAGTGACAAAATATATAGTCACAAATTTTTCTCCAATTTTTGGCACAAAAACAAAAGTTA
TAGAATGACATGTATTGTAACTATAACTTATAATTATTGTTATAAAAA
Found at i:1739923 original size:21 final size:21
Alignment explanation
Indices: 1739893--1739968 Score: 84
Period size: 21 Copynumber: 3.6 Consensus size: 21
1739883 GATTTACATA
*
1739893 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
*
1739914 TTCGCGTTGCGATTTATTCCAAG
1 TTCGCGTTGCGA--TAGTCCAAG
* *
1739937 TT--CGTTACGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
1739956 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
1739969 TTATTCCAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 9 0.20
21 26 0.58
23 10 0.22
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:1739949 original size:42 final size:42
Alignment explanation
Indices: 1739902--1739989 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
1739892 ATTCGCATTG
*
1739902 CGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTA
1 CGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGTTA
*
1739944 CGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTA
1 CGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGTTA
1739986 CGAT
1 CGAT
1739990 TTATTCCATG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (42 bp):
CGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGTTA
Found at i:1739984 original size:21 final size:21
Alignment explanation
Indices: 1739908--1740007 Score: 96
Period size: 21 Copynumber: 4.7 Consensus size: 21
1739898 ATTGCGATAG
1739908 TCCAAGTTCGCGTTGCGATTTAT
1 TCCAAGTT--CGTTGCGATTTAT
* *
1739931 TCCAAGTTCGTTACGA--TAG
1 TCCAAGTTCGTTGCGATTTAT
*
1739950 TCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTT--CGTTGCGATTTAT
* *
1739973 TCCAAATTCGTTACGATTTAT
1 TCCAAGTTCGTTGCGATTTAT
*
1739994 TCCATGTTCGTTGC
1 TCCAAGTTCGTTGC
1740008 AATAGTCCAA
Statistics
Matches: 62, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
19 9 0.15
21 37 0.60
23 16 0.26
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (21 bp):
TCCAAGTTCGTTGCGATTTAT
Found at i:1740882 original size:17 final size:16
Alignment explanation
Indices: 1740862--1740899 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
1740852 TATTATTTAT
1740862 TTATTAATTAATTAGTA
1 TTATTAATTAA-TAGTA
*
1740879 TTATTAATTAATATTA
1 TTATTAATTAATAGTA
1740895 TTATT
1 TTATT
1740900 TTCTCACACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TTATTAATTAATAGTA
Found at i:1740886 original size:13 final size:13
Alignment explanation
Indices: 1740844--1740897 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
1740834 AGTTCTAGAC
1740844 TAATCTAATATTAT
1 TAAT-TAATATTAT
*
1740858 TTATT--TATTAAT
1 TAATTAATATT-AT
*
1740870 TAATTAGTATTAT
1 TAATTAATATTAT
1740883 TAATTAATATTAT
1 TAATTAATATTAT
1740896 TA
1 TA
1740898 TTTTCTCACA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
11 4 0.12
12 6 0.18
13 17 0.50
14 7 0.21
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (13 bp):
TAATTAATATTAT
Found at i:1743203 original size:23 final size:23
Alignment explanation
Indices: 1743159--1743203 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
1743149 GTAAAAATTT
* * *
1743159 ATTTAGTCACAATAACATATTAA
1 ATTTAATCAAAATAACAAATTAA
*
1743182 ATTTAATCAAAATAAGAAATTA
1 ATTTAATCAAAATAACAAATTA
1743204 TGTTAAATTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.33
Consensus pattern (23 bp):
ATTTAATCAAAATAACAAATTAA
Found at i:1757217 original size:21 final size:21
Alignment explanation
Indices: 1757175--1757213 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1757165 CATCAAGGCC
*
1757175 TTTGTTGAAGCCATGAAATCT
1 TTTGTCGAAGCCATGAAATCT
1757196 TTTGTCGAAGCCAT-AAAT
1 TTTGTCGAAGCCATGAAAT
1757214 TCTTGAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (21 bp):
TTTGTCGAAGCCATGAAATCT
Found at i:1759393 original size:49 final size:49
Alignment explanation
Indices: 1759339--1759452 Score: 167
Period size: 49 Copynumber: 2.3 Consensus size: 49
1759329 TCATGACGGT
* ** *
1759339 AATGCACTGTTATTCATCTAACTTGCATTAGTGGCACCTTTCTGCCAAA
1 AATGCACAGTTAGGCATCTAACTTGCATTAATGGCACCTTTCTGCCAAA
* *
1759388 AATGCACCGTTAGGCATCTAACTTGCATTAATGGCACCTTTCTTCCAAA
1 AATGCACAGTTAGGCATCTAACTTGCATTAATGGCACCTTTCTGCCAAA
1759437 AA-GCACAGTTAGGCAT
1 AATGCACAGTTAGGCAT
1759453 TTATTCTTTC
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 13 0.22
49 46 0.78
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (49 bp):
AATGCACAGTTAGGCATCTAACTTGCATTAATGGCACCTTTCTGCCAAA
Found at i:1759996 original size:55 final size:55
Alignment explanation
Indices: 1759713--1760297 Score: 863
Period size: 55 Copynumber: 10.7 Consensus size: 55
1759703 CCTAATGCTA
* * * *
1759713 ATACGGAAATTCATAATCTCATTATGAATTTCTTAG-GTTGCACACACAGTGCCG
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
* * * *
1759767 ATATGAAAATTCATAAACTTATTATGAATTTCTTAG-GTTGCACACACAGTGCCG
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
* * * * * *
1759821 ATACGGAAATTTATAAACTTATTATAAATTTCTAAG-GTTGCACACACAGTGTCA
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
* * *
1759875 ATACGGAAATTCATAAACTTATTATGAATTTCTTAG-ATTGCACACATAGTACCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
*
1759929 ATATGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
* *
1759984 ATACGGAAATTCATAAACTTATTATGTATTTCTTAGTTTTGCACACGCAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
*
1760039 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
* *
1760094 ATAGGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTTCACACACAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
*** * * *
1760149 ATATATAAATTCATAAGCTTATTATGAATTTCTTAGTTTTGCACACACAGTTCCA
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
* *
1760204 ATACGGAAATTCATAAACTTTTTATGAATTTCTTAGTTTTGCACACACAGTGCTC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
1760259 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTT
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTT
1760298 GTACATATAG
Statistics
Matches: 482, Mismatches: 48, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
54 178 0.37
55 304 0.63
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.36
Consensus pattern (55 bp):
ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCC
Found at i:1760676 original size:22 final size:19
Alignment explanation
Indices: 1760650--1760703 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
1760640 TACCCCTACC
*
1760650 ATGGTATCGATATTTCTATAAT
1 ATGGTATCGATA-CTCTAT--T
*
1760672 ATGGTATTGATACTCTATT
1 ATGGTATCGATACTCTATT
1760691 ATGGTATCGATAC
1 ATGGTATCGATAC
1760704 CATTTCTACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 13 0.45
21 5 0.17
22 11 0.38
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.43
Consensus pattern (19 bp):
ATGGTATCGATACTCTATT
Found at i:1768841 original size:23 final size:23
Alignment explanation
Indices: 1768811--1768867 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
1768801 GTATATATAC
*
1768811 AAACATAATATTGTTAAAGTAGG
1 AAACATAATATTGTTAAAGTAAG
1768834 AAACATAATATTGTTAAAGTAAG
1 AAACATAATATTGTTAAAGTAAG
*
1768857 TAACATAATAT
1 AAACATAATAT
1768868 ATTACATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.51, C:0.05, G:0.12, T:0.32
Consensus pattern (23 bp):
AAACATAATATTGTTAAAGTAAG
Found at i:1769320 original size:31 final size:31
Alignment explanation
Indices: 1769247--1769334 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 31
1769237 TATTTTGAAT
* * *
1769247 CTTAAATTTTATATAAAATATTAATTTAACC
1 CTTAAAATTTAGATAAAATATAAATTTAACC
* **
1769278 CATAAAATTTAGATAAAATATAAATTTAGTC
1 CTTAAAATTTAGATAAAATATAAATTTAACC
* * *
1769309 CTTAAACTTTAGTTAAGATATCAAAT
1 CTTAAAATTTAGATAAAATAT-AAAT
1769335 AAATTTGATC
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
31 42 0.91
32 4 0.09
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.40
Consensus pattern (31 bp):
CTTAAAATTTAGATAAAATATAAATTTAACC
Found at i:1770035 original size:16 final size:16
Alignment explanation
Indices: 1770014--1770045 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1770004 TTTTTTTAAC
*
1770014 TTTCTAACTGTAAGGA
1 TTTCTAAATGTAAGGA
1770030 TTTCTAAATGTAAGGA
1 TTTCTAAATGTAAGGA
1770046 CTTGATCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (16 bp):
TTTCTAAATGTAAGGA
Found at i:1777507 original size:297 final size:297
Alignment explanation
Indices: 1776973--1777571 Score: 1189
Period size: 297 Copynumber: 2.0 Consensus size: 297
1776963 GAAGGTAAGT
1776973 TTTTGGTTTTCACGGTTTGTTCCTAAGCAATGCTGTTAGAATGCAAAGACGGTCAGGTTTGTAAC
1 TTTTGGTTTTCACGGTTTGTTCCTAAGCAATGCTGTTAGAATGCAAAGACGGTCAGGTTTGTAAC
1777038 AATTTGGTTGCGTTTGCGGTGGCTGAAACTAGATGAATGTGAAGAATGAAAAAAGAATCTGAGTC
66 AATTTGGTTGCGTTTGCGGTGGCTGAAACTAGATGAATGTGAAGAATGAAAAAAGAATCTGAGTC
1777103 TAATTTCTCTAATTTTAAACATTAAATGCAATAAGAAACCTTTGGATCGTCTAATTCCCATCCAT
131 TAATTTCTCTAATTTTAAACATTAAATGCAATAAGAAACCTTTGGATCGTCTAATTCCCATCCAT
1777168 TACTCAAACCTTTTAACTTGTGAATGAAAATTCCCCAATGTCACTAGTTAATTGTTTGCCATTGA
196 TACTCAAACCTTTTAACTTGTGAATGAAAATTCCCCAATGTCACTAGTTAATTGTTTGCCATTGA
1777233 TTTGACTTTGAATAATTAATGTTATAAAAAGCTCAGC
261 TTTGACTTTGAATAATTAATGTTATAAAAAGCTCAGC
*
1777270 TTTTGGTTTTCACGGTTTGTTCCTAAGCAATGCTTTTAGAATGCAAAGACGGTCAGGTTTGTAAC
1 TTTTGGTTTTCACGGTTTGTTCCTAAGCAATGCTGTTAGAATGCAAAGACGGTCAGGTTTGTAAC
1777335 AATTTGGTTGCGTTTGCGGTGGCTGAAACTAGATGAATGTGAAGAATGAAAAAAGAATCTGAGTC
66 AATTTGGTTGCGTTTGCGGTGGCTGAAACTAGATGAATGTGAAGAATGAAAAAAGAATCTGAGTC
1777400 TAATTTCTCTAATTTTAAACATTAAATGCAATAAGAAACCTTTGGATCGTCTAATTCCCATCCAT
131 TAATTTCTCTAATTTTAAACATTAAATGCAATAAGAAACCTTTGGATCGTCTAATTCCCATCCAT
1777465 TACTCAAACCTTTTAACTTGTGAATGAAAATTCCCCAATGTCACTAGTTAATTGTTTGCCATTGA
196 TACTCAAACCTTTTAACTTGTGAATGAAAATTCCCCAATGTCACTAGTTAATTGTTTGCCATTGA
1777530 TTTGACTTTGAATAATTAATGTTATAAAAAGCTCAGC
261 TTTGACTTTGAATAATTAATGTTATAAAAAGCTCAGC
1777567 TTTTG
1 TTTTG
1777572 ATAAATTGTT
Statistics
Matches: 301, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
297 301 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (297 bp):
TTTTGGTTTTCACGGTTTGTTCCTAAGCAATGCTGTTAGAATGCAAAGACGGTCAGGTTTGTAAC
AATTTGGTTGCGTTTGCGGTGGCTGAAACTAGATGAATGTGAAGAATGAAAAAAGAATCTGAGTC
TAATTTCTCTAATTTTAAACATTAAATGCAATAAGAAACCTTTGGATCGTCTAATTCCCATCCAT
TACTCAAACCTTTTAACTTGTGAATGAAAATTCCCCAATGTCACTAGTTAATTGTTTGCCATTGA
TTTGACTTTGAATAATTAATGTTATAAAAAGCTCAGC
Found at i:1782679 original size:51 final size:51
Alignment explanation
Indices: 1782543--1782680 Score: 171
Period size: 51 Copynumber: 2.8 Consensus size: 51
1782533 AATTGCTATG
*
1782543 TTACATTTTCACTAATTATTTCA-TTTT-CG---GGGTTGGGGTTGGTTTA
1 TTACATTTTCACTAATTATTTCATTTTTGAGTTTGGGTTGGGGTTGGTTTA
* *
1782589 TTACATTTTCACTAATTATTTCATTTTTGGGTTTGGGTTGGGGTTGGTTTG
1 TTACATTTTCACTAATTATTTCATTTTTGAGTTTGGGTTGGGGTTGGTTTA
** *
1782640 TTACATTTTTGCTAATTATTTTATTTTTGAG-TTGAGGTTGG
1 TTACATTTTCACTAATTATTTCATTTTTGAGTTTG-GGTTGG
1782681 TTCAGTAATA
Statistics
Matches: 80, Mismatches: 6, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
46 23 0.29
47 4 0.05
48 1 0.01
50 3 0.04
51 49 0.61
ACGTcount: A:0.17, C:0.08, G:0.22, T:0.53
Consensus pattern (51 bp):
TTACATTTTCACTAATTATTTCATTTTTGAGTTTGGGTTGGGGTTGGTTTA
Found at i:1782713 original size:26 final size:26
Alignment explanation
Indices: 1782684--1782733 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1782674 AGGTTGGTTC
* *
1782684 AGTAATAAATAACTTGATATCATTCA
1 AGTAATAAATAAATTAATATCATTCA
1782710 AGTAATAAATAAATTAATATCATT
1 AGTAATAAATAAATTAATATCATT
1782734 TAAATAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.36
Consensus pattern (26 bp):
AGTAATAAATAAATTAATATCATTCA
Found at i:1782950 original size:131 final size:132
Alignment explanation
Indices: 1782715--1782978 Score: 449
Period size: 131 Copynumber: 2.0 Consensus size: 132
1782705 ATTCAAGTAA
* *
1782715 TAAATAAATTAATATCATTTAAATAAGTCTTGAGTTCAAGTCTTTATGTATGCAGAAAATCTCTC
1 TAAATAAATTAATATCATTTAAATAAGTCTTGAGTTCAAGTCCTTATGTATGCAGAAAATATCTC
1782780 TTCATTTTCGAGGTTAGAATTGATTCAATAATAAGCAGCTTGATATCATTTAAATAAGTCTCGAG
66 TTCATTTTCGAGGTTAGAATTGATTCAATAATAAGCAGCTTGATATCATTTAAATAAGTCTCGAG
1782845 TT
131 TT
* * *
1782847 TAAATAACTTGATATCATTTAAGTAAGT-TTGAGTTCAAGTCCTTATGTATGCAGAAAATATCTC
1 TAAATAAATTAATATCATTTAAATAAGTCTTGAGTTCAAGTCCTTATGTATGCAGAAAATATCTC
* * *
1782911 TTCATTTTCGAGGTTGGAATTGATTCAGTAATAAGCAGCTTGATATTATTTAAATAAGTCTCGAG
66 TTCATTTTCGAGGTTAGAATTGATTCAATAATAAGCAGCTTGATATCATTTAAATAAGTCTCGAG
1782976 TT
131 TT
1782978 T
1 T
1782979 GAGTCCCTAT
Statistics
Matches: 124, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
131 99 0.80
132 25 0.20
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (132 bp):
TAAATAAATTAATATCATTTAAATAAGTCTTGAGTTCAAGTCCTTATGTATGCAGAAAATATCTC
TTCATTTTCGAGGTTAGAATTGATTCAATAATAAGCAGCTTGATATCATTTAAATAAGTCTCGAG
TT
Found at i:1784625 original size:16 final size:16
Alignment explanation
Indices: 1784604--1784635 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1784594 TTAACCGGTC
1784604 CGGTTCTGAAAACCAT
1 CGGTTCTGAAAACCAT
1784620 CGGTTCTGAAAACCAT
1 CGGTTCTGAAAACCAT
1784636 GCTCGAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (16 bp):
CGGTTCTGAAAACCAT
Found at i:1792608 original size:21 final size:21
Alignment explanation
Indices: 1792582--1792644 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
1792572 ATACCCAAAC
*
1792582 TAGTGCTAAGGCTCTTTAGAT
1 TAGTGCTAAGGCACTTTAGAT
* * *
1792603 TAGTGCCAATGCACTTTA-TT
1 TAGTGCTAAGGCACTTTAGAT
*
1792623 TCAGTGCTAAGTCACTTTAGAT
1 T-AGTGCTAAGGCACTTTAGAT
1792645 GCTAGTTAAG
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.38
Consensus pattern (21 bp):
TAGTGCTAAGGCACTTTAGAT
Found at i:1794893 original size:37 final size:37
Alignment explanation
Indices: 1794852--1794973 Score: 174
Period size: 37 Copynumber: 3.3 Consensus size: 37
1794842 ATTATACTAG
* * * * *
1794852 AAAATATCCATCAAAGTATCCAAAAAAACATTCAACA
1 AAAATATCCAACAAAGTGTCTAACAAAACATCCAACA
1794889 AAAATATCCAAC-AAGTTGTCTAACAAAACATCCAACA
1 AAAATATCCAACAAAG-TGTCTAACAAAACATCCAACA
*
1794926 AAAATATCCAACAAATTGTCTAACAAAACATCCAACA
1 AAAATATCCAACAAAGTGTCTAACAAAACATCCAACA
1794963 AAAATATCCAA
1 AAAATATCCAA
1794974 TAAATATATC
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
36 3 0.04
37 72 0.94
38 2 0.03
ACGTcount: A:0.55, C:0.23, G:0.03, T:0.19
Consensus pattern (37 bp):
AAAATATCCAACAAAGTGTCTAACAAAACATCCAACA
Found at i:1794925 original size:12 final size:12
Alignment explanation
Indices: 1794852--1794986 Score: 99
Period size: 12 Copynumber: 10.9 Consensus size: 12
1794842 ATTATACTAG
*
1794852 AAAATATCCATC
1 AAAATATCCAAC
* *
1794864 AAAGTATCCAAA
1 AAAATATCCAAC
* *
1794876 AAAACATTCAAC
1 AAAATATCCAAC
1794888 AAAAATATCCAAC
1 -AAAATATCCAAC
** * *
1794901 AAGTTGTCTAAC
1 AAAATATCCAAC
*
1794913 AAAACATCCAAC
1 AAAATATCCAAC
1794925 AAAAATATCCAAC
1 -AAAATATCCAAC
* * *
1794938 AAATTGTCTAAC
1 AAAATATCCAAC
*
1794950 AAAACATCCAAC
1 AAAATATCCAAC
*
1794962 AAAAATATCCAAT
1 -AAAATATCCAAC
1794975 AAATATATCCAA
1 AAA-ATATCCAA
1794987 AATAGTGTCA
Statistics
Matches: 91, Mismatches: 28, Indels: 7
0.72 0.22 0.06
Matches are distributed among these distances:
12 52 0.57
13 39 0.43
ACGTcount: A:0.55, C:0.22, G:0.03, T:0.20
Consensus pattern (12 bp):
AAAATATCCAAC
Found at i:1796207 original size:21 final size:21
Alignment explanation
Indices: 1796182--1796222 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1796172 CTGCGTAGAA
*
1796182 ATGTCCTGAAAGACCACATAT
1 ATGTCCCGAAAGACCACATAT
*
1796203 ATGTCCCGAAGGACCACATA
1 ATGTCCCGAAAGACCACATA
1796223 GATTTCTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.20
Consensus pattern (21 bp):
ATGTCCCGAAAGACCACATAT
Found at i:1796297 original size:21 final size:21
Alignment explanation
Indices: 1796193--1796299 Score: 65
Period size: 21 Copynumber: 5.0 Consensus size: 21
1796183 TGTCCTGAAA
* *
1796193 GACCACATATATGTCCCGAAG
1 GACCACATATATGTTCCAAAG
* * *
1796214 GACCACATAGAT-TTCTACTTATG
1 GACCACATATATGTTC--C-AAAG
* * *
1796237 GACCACATATATATTTCAATG
1 GACCACATATATGTTCCAAAG
* *
1796258 GACCA-ACTATGTGTACCAAAG
1 GACCACA-TATATGTTCCAAAG
*
1796279 TACCACATATATGTTCCAAAG
1 GACCACATATATGTTCCAAAG
1796300 AATTATATAT
Statistics
Matches: 65, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
20 3 0.05
21 44 0.68
22 3 0.05
23 13 0.20
24 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (21 bp):
GACCACATATATGTTCCAAAG
Found at i:1797275 original size:35 final size:35
Alignment explanation
Indices: 1797229--1797298 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 35
1797219 CATTGCAAGA
*
1797229 ATGGTACCGATACT-TCCATCTT-GGTATCGATACCC
1 ATGGTACCGATACTAT-CA-CTTCAGTATCGATACCC
1797264 ATGGTACCGATACTATCACTTCAGTATCGATACCC
1 ATGGTACCGATACTATCACTTCAGTATCGATACCC
1797299 CACAAATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 3 0.09
35 28 0.88
36 1 0.03
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (35 bp):
ATGGTACCGATACTATCACTTCAGTATCGATACCC
Found at i:1801286 original size:23 final size:23
Alignment explanation
Indices: 1801260--1801358 Score: 94
Period size: 23 Copynumber: 4.3 Consensus size: 23
1801250 CATTTGTTGT
* *
1801260 GTTTGTGTTGTTTGTTTATGTTC
1 GTTTATGTTATTTGTTTATGTTC
* *
1801283 GTTTAT-TGTGTTTGTTTATGCTC
1 GTTTATGT-TATTTGTTTATGTTC
*
1801306 GTTTATGTTAATTT-ATTATGTTC
1 GTTTATGTT-ATTTGTTTATGTTC
* *
1801329 GTTTATGTTTATTTGTTTGTATTC
1 GTTTATG-TTATTTGTTTATGTTC
1801353 GTTTAT
1 GTTTAT
1801359 ATTCGTTTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
22 1 0.02
23 44 0.70
24 18 0.29
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.64
Consensus pattern (23 bp):
GTTTATGTTATTTGTTTATGTTC
Found at i:1801321 original size:33 final size:33
Alignment explanation
Indices: 1801251--1801335 Score: 91
Period size: 33 Copynumber: 2.6 Consensus size: 33
1801241 TTTTACATTC
* * * * *
1801251 ATTTGTTGTGTTTGTGT-TGTTTGTTTATGTTC
1 ATTTATTGTGTTTGTTTATGCTCGTTTATGTTA
*
1801283 GTTTATTGTGTTTGTTTATGCTCGTTTATGTTA
1 ATTTATTGTGTTTGTTTATGCTCGTTTATGTTA
* *
1801316 ATTTATTATGTTCGTTTATG
1 ATTTATTGTGTTTGTTTATG
1801336 TTTATTTGTT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 14 0.33
33 29 0.67
ACGTcount: A:0.12, C:0.05, G:0.21, T:0.62
Consensus pattern (33 bp):
ATTTATTGTGTTTGTTTATGCTCGTTTATGTTA
Found at i:1803061 original size:20 final size:20
Alignment explanation
Indices: 1803038--1803076 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1803028 TCGATCCTTC
* *
1803038 TAAGTTTAATTACTTTTAAT
1 TAAGTCTAAATACTTTTAAT
1803058 TAAGTCTAAATACTTTTAA
1 TAAGTCTAAATACTTTTAA
1803077 AAAATTTAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (20 bp):
TAAGTCTAAATACTTTTAAT
Found at i:1808537 original size:21 final size:21
Alignment explanation
Indices: 1808513--1808556 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
1808503 TCTGCAGATA
1808513 AACCATTAAAGTATCTCATTG
1 AACCATTAAAGTATCTCATTG
1808534 AACCATTAAAGTATCTCATTG
1 AACCATTAAAGTATCTCATTG
1808555 AA
1 AA
1808557 GGATTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (21 bp):
AACCATTAAAGTATCTCATTG
Found at i:1810798 original size:60 final size:60
Alignment explanation
Indices: 1810725--1810838 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 60
1810715 AATGAAGGAC
* * ** *
1810725 ATAGTTTAGGGATGTAAA-TGAAATATTTAAAAGTTTAAGGATTAATTTAAAATAATAATT
1 ATAGTTTAGGGATG-AAATTAAAATATTTAAAAATTTAAAAATCAATTTAAAATAATAATT
*
1810785 ATAGTTTATGGATGAAATTAAAATATTTAAAAATTTAAAAATCAATTTAAAATA
1 ATAGTTTAGGGATGAAATTAAAATATTTAAAAATTTAAAAATCAATTTAAAATA
1810839 GAAACCATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
59 3 0.06
60 44 0.94
ACGTcount: A:0.50, C:0.01, G:0.11, T:0.38
Consensus pattern (60 bp):
ATAGTTTAGGGATGAAATTAAAATATTTAAAAATTTAAAAATCAATTTAAAATAATAATT
Found at i:1821993 original size:15 final size:15
Alignment explanation
Indices: 1821973--1822002 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1821963 GATTAGTATC
1821973 TTTCCTAACTTAGAG
1 TTTCCTAACTTAGAG
*
1821988 TTTCCTAATTTAGAG
1 TTTCCTAACTTAGAG
1822003 ATATATTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (15 bp):
TTTCCTAACTTAGAG
Found at i:1831024 original size:23 final size:22
Alignment explanation
Indices: 1830981--1831031 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
1830971 ATCTATTCAT
*
1830981 CAAAAAACAACACTCCCACAAC
1 CAAAAAACAACACTCCAACAAC
* *
1831003 CAAAAACCAACTCTCCAAACAA-
1 CAAAAAACAACACTCC-AACAAC
1831025 CAAAAAA
1 CAAAAAA
1831032 GTGAGACTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.59, C:0.35, G:0.00, T:0.06
Consensus pattern (22 bp):
CAAAAAACAACACTCCAACAAC
Found at i:1834587 original size:4 final size:4
Alignment explanation
Indices: 1834578--1834605 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
1834568 TTGCATGGTC
1834578 CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA
1834606 TAATATGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:1838587 original size:29 final size:29
Alignment explanation
Indices: 1838489--1838587 Score: 71
Period size: 33 Copynumber: 3.3 Consensus size: 29
1838479 TAGTTATTTA
* *
1838489 ATAATAAAT-AATT-AATTTTAA-TTTTT
1 ATAATAATTAAATTAAATATTAATTTTTT
* *
1838515 AAAATAACTTAAATTAAATATTAATTATTTA
1 ATAATAA-TTAAATTAAATATTAATT-TTTT
*
1838546 ATACATTTTATTAAATATAAA-ATTAATTTTTT
1 ATA-A--TAATTAAAT-TAAATATTAATTTTTT
1838578 ATAATAATTA
1 ATAATAATTA
1838588 CAAATTTTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
26 6 0.11
27 1 0.02
28 4 0.07
29 12 0.21
30 1 0.02
31 6 0.11
32 7 0.12
33 13 0.23
34 6 0.11
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.48
Consensus pattern (29 bp):
ATAATAATTAAATTAAATATTAATTTTTT
Found at i:1840254 original size:7 final size:7
Alignment explanation
Indices: 1840227--1840326 Score: 94
Period size: 7 Copynumber: 14.4 Consensus size: 7
1840217 CCAAGCCGGC
*
1840227 CCGTCTG
1 CCGTCCG
1840234 CCGTCCG
1 CCGTCCG
* *
1840241 ACATCCG
1 CCGTCCG
1840248 CCGTCCG
1 CCGTCCG
*
1840255 CCGTCTG
1 CCGTCCG
1840262 CCGTCCG
1 CCGTCCG
* *
1840269 ACATCCG
1 CCGTCCG
*
1840276 -CGTCTG
1 CCGTCCG
1840282 CCGTCCG
1 CCGTCCG
*
1840289 ACGTCCG
1 CCGTCCG
*
1840296 CCGTCTG
1 CCGTCCG
1840303 CCGTCCG
1 CCGTCCG
* *
1840310 ACATCCG
1 CCGTCCG
1840317 CCGTCCG
1 CCGTCCG
1840324 CCG
1 CCG
1840327 CCACTTTCCG
Statistics
Matches: 72, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
6 4 0.06
7 68 0.94
ACGTcount: A:0.07, C:0.49, G:0.26, T:0.18
Consensus pattern (7 bp):
CCGTCCG
Found at i:1840257 original size:21 final size:21
Alignment explanation
Indices: 1840251--1840326 Score: 127
Period size: 21 Copynumber: 3.7 Consensus size: 21
1840241 ACATCCGCCG
1840251 TCCGCCGTCTGCCGTCCGACA
1 TCCGCCGTCTGCCGTCCGACA
*
1840272 TCCG-CGTCTGCCGTCCGACG
1 TCCGCCGTCTGCCGTCCGACA
1840292 TCCGCCGTCTGCCGTCCGACA
1 TCCGCCGTCTGCCGTCCGACA
*
1840313 TCCGCCGTCCGCCG
1 TCCGCCGTCTGCCG
1840327 CCACTTTCCG
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
20 19 0.37
21 32 0.63
ACGTcount: A:0.07, C:0.49, G:0.26, T:0.18
Consensus pattern (21 bp):
TCCGCCGTCTGCCGTCCGACA
Found at i:1840306 original size:41 final size:42
Alignment explanation
Indices: 1840233--1840326 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 42
1840223 CGGCCCGTCT
* * *
1840233 GCCGTCCGACATCCGCCGTCCGCCGTCTGCCGTCCGACATCC
1 GCCGTCCGCCGTCCGACGTCCGCCGTCTGCCGTCCGACATCC
*
1840275 G-CGTCTGCCGTCCGACGTCCGCCGTCTGCCGTCCGACATCC
1 GCCGTCCGCCGTCCGACGTCCGCCGTCTGCCGTCCGACATCC
1840316 GCCGTCCGCCG
1 GCCGTCCGCCG
1840327 CCACTTTCCG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 37 0.80
42 9 0.20
ACGTcount: A:0.07, C:0.49, G:0.27, T:0.17
Consensus pattern (42 bp):
GCCGTCCGCCGTCCGACGTCCGCCGTCTGCCGTCCGACATCC
Found at i:1849679 original size:201 final size:201
Alignment explanation
Indices: 1849334--1849739 Score: 796
Period size: 201 Copynumber: 2.0 Consensus size: 201
1849324 GCCTCGAGTA
1849334 CTTGTTGTGCCAGATTTCCTTCTTGCTTTGGGTGAGTTTTTTGTGCCGACACTGGGGGCAATAAC
1 CTTGTTGTGCCAGATTTCCTTCTTGCTTTGGGTGAGTTTTTTGTGCCGACACTGGGGGCAATAAC
1849399 TGGAAGGGAAGAAACACTGGACCCAAAGAATGATCCGATAAATAAGACCGATAGCATCGTGCTTT
66 TGGAAGGGAAGAAACACTGGACCCAAAGAATGATCCGATAAATAAGACCGATAGCATCGTGCTTT
1849464 ATGATAGTATTTATAAAACAGGATGAAGATGTTGTGCACTTGTCA-CCAGTAGACAGCTGGTTGC
131 ATGATAGTATTTAT-AAACAGGATGAAGATGTTGTGCACTTGTCACCCAGTAGACAGCTGGTTGC
1849528 GGATACC
195 GGATACC
1849535 CTTGTTGTGCCAGATTTCCTTCTTGCTTTGGGTGAGTTTTTTGTGCCGACACTGGGGGCAATAAC
1 CTTGTTGTGCCAGATTTCCTTCTTGCTTTGGGTGAGTTTTTTGTGCCGACACTGGGGGCAATAAC
1849600 TGGAAGGGAAGAAACACTGGACCCAAAGAATGATCCGATAAATAAGACCGATAGCATCGTGCTTT
66 TGGAAGGGAAGAAACACTGGACCCAAAGAATGATCCGATAAATAAGACCGATAGCATCGTGCTTT
1849665 ATGATAGTATTTATAAACAGGATGAAGATGTTGTGCACTTGTCACCCAGTAGACAGCTGGTTGCG
131 ATGATAGTATTTATAAACAGGATGAAGATGTTGTGCACTTGTCACCCAGTAGACAGCTGGTTGCG
1849730 GATACC
196 GATACC
1849736 CTTG
1 CTTG
1849740 GTATTGATGA
Statistics
Matches: 204, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
200 30 0.15
201 174 0.85
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (201 bp):
CTTGTTGTGCCAGATTTCCTTCTTGCTTTGGGTGAGTTTTTTGTGCCGACACTGGGGGCAATAAC
TGGAAGGGAAGAAACACTGGACCCAAAGAATGATCCGATAAATAAGACCGATAGCATCGTGCTTT
ATGATAGTATTTATAAACAGGATGAAGATGTTGTGCACTTGTCACCCAGTAGACAGCTGGTTGCG
GATACC
Found at i:1851133 original size:16 final size:16
Alignment explanation
Indices: 1851112--1851143 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1851102 GAATAGGAAG
1851112 CCTCATTAAAAACCTC
1 CCTCATTAAAAACCTC
*
1851128 CCTCATTAAAAGCCTC
1 CCTCATTAAAAACCTC
1851144 ATAAAAGAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.38, G:0.03, T:0.25
Consensus pattern (16 bp):
CCTCATTAAAAACCTC
Found at i:1852454 original size:27 final size:26
Alignment explanation
Indices: 1852412--1852471 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 26
1852402 TTATAGGAAT
1852412 TATAGAG-ATGATTTGTTACCATTCC
1 TATAGAGAATGATTTGTTACCATTCC
1852437 TATAGAGATATGATTTGTTACCATTCC
1 TATAGAGA-ATGATTTGTTACCATTCC
1852464 TATAGAGA
1 TATAGAGA
1852472 GAGATGATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 7 0.21
27 26 0.79
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (26 bp):
TATAGAGAATGATTTGTTACCATTCC
Found at i:1854179 original size:44 final size:44
Alignment explanation
Indices: 1854129--1854216 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
1854119 TTCAGGGGAG
1854129 ACATGGAAGGATTTTCAGCCACATCAGCTATCTCCTCCTACTCT
1 ACATGGAAGGATTTTCAGCCACATCAGCTATCTCCTCCTACTCT
1854173 ACATGGAAGGATTTTCAGCCACATCAGCTATCTCCTCCTACTCT
1 ACATGGAAGGATTTTCAGCCACATCAGCTATCTCCTCCTACTCT
1854217 TCATTCTCAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.30
Consensus pattern (44 bp):
ACATGGAAGGATTTTCAGCCACATCAGCTATCTCCTCCTACTCT
Found at i:1856289 original size:27 final size:25
Alignment explanation
Indices: 1856199--1856284 Score: 154
Period size: 25 Copynumber: 3.4 Consensus size: 25
1856189 GTGTAGGAAT
1856199 TATAGAGATGATTTGTTACCATTCC
1 TATAGAGATGATTTGTTACCATTCC
1856224 TATAGAGATGATTTGTTACCATTCC
1 TATAGAGATGATTTGTTACCATTCC
1856249 TATAGAGATATGATTTGTTACCATTCC
1 TATAGAG--ATGATTTGTTACCATTCC
1856276 TATAGAGAT
1 TATAGAGAT
1856285 ATGATATTGT
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
25 34 0.58
27 25 0.42
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (25 bp):
TATAGAGATGATTTGTTACCATTCC
Found at i:1858358 original size:25 final size:25
Alignment explanation
Indices: 1858324--1858372 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
1858314 CAACATATGA
1858324 TTGTTTGTGCTAATCTTGAACTTCC
1 TTGTTTGTGCTAATCTTGAACTTCC
1858349 TTGTTTGTGCTAATCTTGAACTTC
1 TTGTTTGTGCTAATCTTGAACTTC
1858373 TTTAGCTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.49
Consensus pattern (25 bp):
TTGTTTGTGCTAATCTTGAACTTCC
Found at i:1861005 original size:54 final size:55
Alignment explanation
Indices: 1860899--1861005 Score: 171
Period size: 54 Copynumber: 2.0 Consensus size: 55
1860889 TTGAGTTGCC
* * *
1860899 TACTTCTAATAGGACTTTTCTAATAGATATAAACTTCTATATTGATTGTGAATCT
1 TACTTCTAATAGGACTTTTCTAATAAATATAAACTTCTATATAGATTATGAATCT
*
1860954 TACTTCT-ATAGGACTTTTCTAATAAATATAAACTTCTATCTAGATTATGAAT
1 TACTTCTAATAGGACTTTTCTAATAAATATAAACTTCTATATAGATTATGAAT
1861006 ACTCCTATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
54 41 0.85
55 7 0.15
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (55 bp):
TACTTCTAATAGGACTTTTCTAATAAATATAAACTTCTATATAGATTATGAATCT
Found at i:1871987 original size:46 final size:47
Alignment explanation
Indices: 1871919--1872011 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 47
1871909 ACTCTCGATA
1871919 AATCCCGTTTTGTTGATGAAGATGGCTGGGCTTATGGTCCTGATTAT
1 AATCCCGTTTTGTTGATGAAGATGGCTGGGCTTATGGTCCTGATTAT
1871966 AATCCCGTTTT-TTGATGAAGATGGCTGGGCTTATGGTCCTGATTAT
1 AATCCCGTTTTGTTGATGAAGATGGCTGGGCTTATGGTCCTGATTAT
1872012 CAAAGTCTGA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 35 0.76
47 11 0.24
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.39
Consensus pattern (47 bp):
AATCCCGTTTTGTTGATGAAGATGGCTGGGCTTATGGTCCTGATTAT
Found at i:1886864 original size:23 final size:23
Alignment explanation
Indices: 1886778--1886865 Score: 99
Period size: 23 Copynumber: 3.8 Consensus size: 23
1886768 ATAATTTGCA
1886778 CCGAAGTG-CCACGTAGAATATGTC
1 CCGAAG-GACCACGTAGAA-ATGTC
*
1886802 CCGAAGGACCACAG-AGATATGTC
1 CCGAAGGACCAC-GTAGAAATGTC
*
1886825 CCGAAGGACCACATAGAAATGTC
1 CCGAAGGACCACGTAGAAATGTC
* *
1886848 CTGAAGTACCACGTAGAA
1 CCGAAGGACCACGTAGAA
1886866 CCCTCGACTC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
23 41 0.75
24 13 0.24
25 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (23 bp):
CCGAAGGACCACGTAGAAATGTC
Found at i:1887014 original size:15 final size:15
Alignment explanation
Indices: 1886996--1887077 Score: 101
Period size: 15 Copynumber: 5.5 Consensus size: 15
1886986 CACATAGGGT
*
1886996 ATTTTCACGTAGAAC
1 ATTTTCACATAGAAC
* *
1887011 ATTTTCACTTAGCAC
1 ATTTTCACATAGAAC
1887026 ATTTTCACATAGAAC
1 ATTTTCACATAGAAC
* *
1887041 ATTTTCATATAAAAC
1 ATTTTCACATAGAAC
* *
1887056 ATATTCACATATAAC
1 ATTTTCACATAGAAC
1887071 ATTTTCA
1 ATTTTCA
1887078 TATACCAATA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 57 1.00
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.38
Consensus pattern (15 bp):
ATTTTCACATAGAAC
Found at i:1888756 original size:23 final size:22
Alignment explanation
Indices: 1888724--1888786 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
1888714 AAGTGCCACG
1888724 TAGAATATGTCCCGAAGGACCA
1 TAGAATATGTCCCGAAGGACCA
1888746 TAGAGATATGTCCCGAAGGACCACA
1 TAGA-ATATGTCCCGAAGGA-C-CA
*
1888771 TATAA-ATGTCCCGAAG
1 TAGAATATGTCCCGAAG
1888787 TACCGCGTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 4 0.11
23 26 0.70
24 2 0.05
25 5 0.14
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (22 bp):
TAGAATATGTCCCGAAGGACCA
Found at i:1888949 original size:15 final size:15
Alignment explanation
Indices: 1888929--1889010 Score: 92
Period size: 15 Copynumber: 5.5 Consensus size: 15
1888919 TACATAGGGT
*
1888929 ATTTTCACGTAGAAC
1 ATTTTCACATAGAAC
** *
1888944 ATTTTCATTTAGCAC
1 ATTTTCACATAGAAC
1888959 ATTTTCACATAGAAC
1 ATTTTCACATAGAAC
* *
1888974 ATTTTCATATAAAAC
1 ATTTTCACATAGAAC
* *
1888989 ATATTCACATATAAC
1 ATTTTCACATAGAAC
1889004 ATTTTCA
1 ATTTTCA
1889011 TATACAAATA
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 55 1.00
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.39
Consensus pattern (15 bp):
ATTTTCACATAGAAC
Found at i:1888963 original size:30 final size:30
Alignment explanation
Indices: 1888929--1889014 Score: 118
Period size: 30 Copynumber: 2.9 Consensus size: 30
1888919 TACATAGGGT
* * **
1888929 ATTTTCACGTAGAACATTTTCATTTAGCAC
1 ATTTTCACATAGAACATTTTCATATAAAAC
1888959 ATTTTCACATAGAACATTTTCATATAAAAC
1 ATTTTCACATAGAACATTTTCATATAAAAC
* *
1888989 ATATTCACATATAACATTTTCATATA
1 ATTTTCACATAGAACATTTTCATATA
1889015 CAAATAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (30 bp):
ATTTTCACATAGAACATTTTCATATAAAAC
Found at i:1889391 original size:20 final size:20
Alignment explanation
Indices: 1889374--1889418 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
1889364 ATAGTATCAG
1889374 TACTCCTCTTACAGTATCGA
1 TACTCCTCTTACAGTATCGA
* *
1889394 TACTTCTCTTATATGGTATCGA
1 TACTCCTCTTACA--GTATCGA
1889416 TAC
1 TAC
1889419 CAACATCTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
22 10 0.48
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.40
Consensus pattern (20 bp):
TACTCCTCTTACAGTATCGA
Found at i:1895558 original size:23 final size:24
Alignment explanation
Indices: 1895490--1895561 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 24
1895480 TGCCACATAG
* * *
1895490 ATATATCCCGAAGGGCCGCTTAGA
1 ATATGTCCCGAAGGACCGCGTAGA
* ** *
1895514 ATTTGTCCCGAATAACCACGTAGA
1 ATATGTCCCGAAGGACCGCGTAGA
1895538 A-ATGTCCCGAAGGACCGCGTAGA
1 ATATGTCCCGAAGGACCGCGTAGA
1895561 A
1 A
1895562 CCCTCGACTC
Statistics
Matches: 37, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
23 19 0.51
24 18 0.49
ACGTcount: A:0.32, C:0.25, G:0.24, T:0.19
Consensus pattern (24 bp):
ATATGTCCCGAAGGACCGCGTAGA
Found at i:1895710 original size:15 final size:15
Alignment explanation
Indices: 1895692--1895758 Score: 71
Period size: 15 Copynumber: 4.5 Consensus size: 15
1895682 CAAATAAGGT
*
1895692 ATTTTCACGTAGAAC
1 ATTTTCACATAGAAC
* *
1895707 ATTTTAACTTAGAAC
1 ATTTTCACATAGAAC
* *
1895722 ATTTTCATATAAAAC
1 ATTTTCACATAGAAC
* *
1895737 ATATTCACATATAAC
1 ATTTTCACATAGAAC
1895752 ATTTTCA
1 ATTTTCA
1895759 TATACCAATA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 42 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.39
Consensus pattern (15 bp):
ATTTTCACATAGAAC
Found at i:1895738 original size:30 final size:30
Alignment explanation
Indices: 1895704--1895762 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
1895694 TTTCACGTAG
* *
1895704 AACATTTTAACTTAGAACATTTTCATATAA
1 AACATATTAACATAGAACATTTTCATATAA
* *
1895734 AACATATTCACATATAACATTTTCATATA
1 AACATATTAACATAGAACATTTTCATATA
1895763 CCAATAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (30 bp):
AACATATTAACATAGAACATTTTCATATAA
Found at i:1900268 original size:17 final size:17
Alignment explanation
Indices: 1900246--1900280 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1900236 ACCGAAGCTA
1900246 ATAGGAAGATTTTTGAG
1 ATAGGAAGATTTTTGAG
1900263 ATAGGAAGATTTTTGAG
1 ATAGGAAGATTTTTGAG
1900280 A
1 A
1900281 ATCGAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (17 bp):
ATAGGAAGATTTTTGAG
Found at i:1902037 original size:653 final size:645
Alignment explanation
Indices: 1900754--1902054 Score: 2154
Period size: 653 Copynumber: 2.0 Consensus size: 645
1900744 ATGAACAATG
* * *
1900754 GGACTATCATGGGGAATAGATCAAAGACTAGAGAGAAACATATTGGTCTGAAGAACAAAATGAAG
1 GGACTATCATGGGGAATAAATCAAAGACTAGAGAGAAACATATTGGTCTGAAGAACAAAAGGAAA
*
1900819 CAAGCGTATAATCCTTTGGATCAACGGTTTTCATACGATAGCGTAACCAAAATTACCAATAACAT
66 CAAGCATATAATCCTTTGGATCAACGGTTTTCATACGATAGCGTAACCAAAATTACCAATAACAT
* *
1900884 GGGAGAAGAGTCAAGCTGGGTGGAAAATCCTATTCAGATAGATGGACCAAATCTTGAAGGGAAAT
131 GGGAGAAGAGTCAAGCTGGGTGGAAAAGCCTATTCAGATAGATGAACCAAATCTTGAAGGGAAAT
* *
1900949 CTCATGAAACCTAAGCACCTAAGAAATACCAAGTGATATCCAAGGAATGAGCCTTCATCACTAAA
196 CTCATGAAACCTAAGCACCTAAGAAATACCAAGTGATAGCCAAGGAACGAGCCTTCATCACTAAA
*
1901014 CATGATCCTAGTATACAGGAAGGAAACCATATGGCTTTATCCATCAGAGAGAGAATAAAAAAGGA
261 CATGATCCTAGTATAAAGGAAGGAAACCATATGGCTTTATCCATCAGAGAGAGAATAAAAAAGGA
* *
1901079 GACAACCAGACGAATCCATCTTAATGTAAGCTAGGGAAAATGAGGCTCTGAAAGTTAAAAAACAA
326 GACAACCAGAAGAATCCATCTTAATGTAAGCTAGGGAAAAGGAGGCTCTGAAAGTTAAAAAACAA
* *
1901144 GGAACCATAAAATACATGACACCCCATTATTAAATGACTGGATATAAGGATTATCCCTACAAGAA
391 GGAACCATAAAATACATAACACCCCATTATGAAATGACTGGATATAAGGATTATCCCTACAAGAA
* * *
1901209 GAGGGCAACAAAAAGTGGAGAACTGGAACATTGAGGGTAACCCAGGTCTACAAAAAGAAGATAAC
456 GAGGGCAACAAAAAATGGAGAACTGGAACATTGAGGGCAACCCAGGTCTACAAAAAGAAGACAAC
* * * *
1901274 ATTGAATATCACAAAACTAGGACCCTCGAAAGCTTAGTTGATGTGGAAATTCAGGATGGTACAGA
521 ATTGAATACCACAAAACTAGGACCCTCAAAAACTTAGTTGATGTGGAAATTCAGAATGGTACAGA
1901339 GGTAAGTATAATCCCAAAATAGTTTTTTCTATGGCTAATATCTTATTTTGGAATGCACAT
586 GGTAAGTATAATCCCAAAATAGTTTTTTCTATGGCTAATATCTTATTTTGGAATGCACAT
* * *
1901399 GGACTATCATGGGGAATAAATCAAAGACTAGAGGGAAATATATTGGTCTGAAGAACAAAGGGAAA
1 GGACTATCATGGGGAATAAATCAAAGACTAGAGAGAAACATATTGGTCTGAAGAACAAAAGGAAA
* * *
1901464 CAAGCATATAATCTTTTGGATCAAGGGTTTTCATACGATAGCGTAACCATAATTACCAATAACAT
66 CAAGCATATAATCCTTTGGATCAACGGTTTTCATACGATAGCGTAACCAAAATTACCAATAACAT
* * *
1901529 GGGAGCAGAGTCAAGCTTGGTGGAAAAGCCTATTCAGATAGATGAACCAAATCTTGAAGGGACAT
131 GGGAGAAGAGTCAAGCTGGGTGGAAAAGCCTATTCAGATAGATGAACCAAATCTTGAAGGGAAAT
* * * *
1901594 CTCGTGAAACCTAAGCACCTAAGTAATACCAAGTGATAGCCAAGTAGCGAGCCTTCATCACTAAA
196 CTCATGAAACCTAAGCACCTAAGAAATACCAAGTGATAGCCAAGGAACGAGCCTTCAT--C---A
* *
1901659 CATTAAACATGATCCTAGTATAAAGGAAGGAAATCATATGGTTTTATCCATCAGAGAGAGAATAA
256 C--TAAACATGATCCTAGTATAAAGGAAGGAAACCATATGGCTTTATCCATCAGAGAGAGAATAA
1901724 AAAAGGAGACAACCAGAAGAATCCATCTTAATGTAAGCTAGGGAAAAGGAGGCTCTGAAAGTTAA
319 AAAAGGAGACAACCAGAAGAATCCATCTTAATGTAAGCTAGGGAAAAGGAGGCTCTGAAAGTTAA
* * *
1901789 AAAACCAGGGAACCATAAAATACCTAACACCCCGTTATGAAATGACTGGATATAAGGATTATCCC
384 AAAA-CAAGGAACCATAAAATACATAACACCCCATTATGAAATGACTGGATATAAGGATTATCCC
*
1901854 TACAAGAAGAGGGCAACAAAAAATGGAGAACTGGAGCATTGAGGGCAACCCAGGTCTACAAAAAG
448 TACAAGAAGAGGGCAACAAAAAATGGAGAACTGGAACATTGAGGGCAACCCAGGTCTACAAAAAG
*
1901919 AAGACAACATTGAATACCACATAACTAGGACCCTCAAAAACTTAGTTGATGTGGAAATTCAGAAT
513 AAGACAACATTGAATACCACAAAACTAGGACCCTCAAAAACTTAGTTGATGTGGAAATTCAGAAT
1901984 GGTACAGAGGTAAGTATAA-CCCAAAAATAGTTTTTTCTATGGCTAATATCTTATTTTGGAATGC
578 GGTACAGAGGTAAGTATAATCCC-AAAATAGTTTTTTCTATGGCTAATATCTTATTTTGGAATGC
1902048 ACAT
642 ACAT
1902052 GGA
1 GGA
1902055 GTTGTGAGTC
Statistics
Matches: 607, Mismatches: 40, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
645 232 0.38
647 1 0.00
650 2 0.00
652 129 0.21
653 243 0.40
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (645 bp):
GGACTATCATGGGGAATAAATCAAAGACTAGAGAGAAACATATTGGTCTGAAGAACAAAAGGAAA
CAAGCATATAATCCTTTGGATCAACGGTTTTCATACGATAGCGTAACCAAAATTACCAATAACAT
GGGAGAAGAGTCAAGCTGGGTGGAAAAGCCTATTCAGATAGATGAACCAAATCTTGAAGGGAAAT
CTCATGAAACCTAAGCACCTAAGAAATACCAAGTGATAGCCAAGGAACGAGCCTTCATCACTAAA
CATGATCCTAGTATAAAGGAAGGAAACCATATGGCTTTATCCATCAGAGAGAGAATAAAAAAGGA
GACAACCAGAAGAATCCATCTTAATGTAAGCTAGGGAAAAGGAGGCTCTGAAAGTTAAAAAACAA
GGAACCATAAAATACATAACACCCCATTATGAAATGACTGGATATAAGGATTATCCCTACAAGAA
GAGGGCAACAAAAAATGGAGAACTGGAACATTGAGGGCAACCCAGGTCTACAAAAAGAAGACAAC
ATTGAATACCACAAAACTAGGACCCTCAAAAACTTAGTTGATGTGGAAATTCAGAATGGTACAGA
GGTAAGTATAATCCCAAAATAGTTTTTTCTATGGCTAATATCTTATTTTGGAATGCACAT
Found at i:1902644 original size:26 final size:26
Alignment explanation
Indices: 1902608--1902665 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
1902598 TCGACTGGCT
1902608 TTATTCTTATCCAAAATAATGGGGTG
1 TTATTCTTATCCAAAATAATGGGGTG
1902634 TTATTCTTATCCAAAATAATGGGGTG
1 TTATTCTTATCCAAAATAATGGGGTG
1902660 TTATTC
1 TTATTC
1902666 GTAATAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.41
Consensus pattern (26 bp):
TTATTCTTATCCAAAATAATGGGGTG
Found at i:1907492 original size:23 final size:23
Alignment explanation
Indices: 1907460--1907543 Score: 123
Period size: 23 Copynumber: 3.7 Consensus size: 23
1907450 CTCATATAAA
*
1907460 TGCACTGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
1907483 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
* * *
1907506 TGCACCGTAGTGCCGCATAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
1907529 TGCACCGTAGTGCCA
1 TGCACCGAAGTGCCA
1907544 TATAATAATG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.20
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:1934136 original size:25 final size:25
Alignment explanation
Indices: 1934108--1934161 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
1934098 GGAGAGTGGA
1934108 AATAAGAAGTGTAAATAGCAACAAC
1 AATAAGAAGTGTAAATAGCAACAAC
1934133 AATAAGAAGTGTAAATAGCAACAAC
1 AATAAGAAGTGTAAATAGCAACAAC
1934158 AATA
1 AATA
1934162 GAGTTGCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.57, C:0.11, G:0.15, T:0.17
Consensus pattern (25 bp):
AATAAGAAGTGTAAATAGCAACAAC
Found at i:1936122 original size:17 final size:18
Alignment explanation
Indices: 1936102--1936135 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1936092 GAAAATAAAA
1936102 AATAAGT-CATAAATTAG
1 AATAAGTACATAAATTAG
*
1936119 AATAATTACATAAATTA
1 AATAAGTACATAAATTA
1936136 CATGCAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (18 bp):
AATAAGTACATAAATTAG
Found at i:1936190 original size:30 final size:29
Alignment explanation
Indices: 1936138--1936196 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
1936128 ATAAATTACA
1936138 TGCAACAAATTAAAGGGCTAAATTGTAAAG
1 TGCAACAAATTAAAGGGCTAAATT-TAAAG
* *
1936168 TGCAAGAAATTAAA-TGCATAAATTTAAAG
1 TGCAACAAATTAAAGGGC-TAAATTTAAAG
1936197 ATTTAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.49, C:0.08, G:0.17, T:0.25
Consensus pattern (29 bp):
TGCAACAAATTAAAGGGCTAAATTTAAAG
Found at i:1936589 original size:5 final size:5
Alignment explanation
Indices: 1936579--1936610 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
1936569 TAACTTTAAC
1936579 CTAAA CTAAA CTAAA CTAAA CTAAA CTAAA CT
1 CTAAA CTAAA CTAAA CTAAA CTAAA CTAAA CT
1936611 CTCTTAGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (5 bp):
CTAAA
Found at i:1945444 original size:17 final size:17
Alignment explanation
Indices: 1945408--1945450 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
1945398 TAAGAGTTAA
* *
1945408 TTTAATAAACGAACTAG
1 TTTAATGAATGAACTAG
* *
1945425 TTTGATGAATGAACTTG
1 TTTAATGAATGAACTAG
1945442 TTTAATGAA
1 TTTAATGAA
1945451 CTACTTCCGT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (17 bp):
TTTAATGAATGAACTAG
Found at i:1950236 original size:11 final size:10
Alignment explanation
Indices: 1950215--1950279 Score: 67
Period size: 10 Copynumber: 6.3 Consensus size: 10
1950205 TCTTTTTGAA
*
1950215 TTTTCTTCTT
1 TTTTTTTCTT
1950225 TTTCTTTTCTT
1 TTT-TTTTCTT
**
1950236 TTTTTTTGAT
1 TTTTTTTCTT
1950246 TTTTTTTCTT
1 TTTTTTTCTT
*
1950256 CTTTTTGTCTT
1 -TTTTTTTCTT
*
1950267 TTTTCTTCTT
1 TTTTTTTCTT
1950277 TTT
1 TTT
1950280 ATACTCTAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
10 27 0.60
11 18 0.40
ACGTcount: A:0.02, C:0.14, G:0.03, T:0.82
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:1950255 original size:31 final size:31
Alignment explanation
Indices: 1950202--1950270 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
1950192 CCTTGGCTTG
* *
1950202 CTTTCTTTTTGAATTTTCTTCTT-TTTCTTTT
1 CTTTTTTTTTGAATTTTCTTCTTCTTT-TTGT
* *
1950233 CTTTTTTTTTGATTTTTTTTCTTCTTTTTGT
1 CTTTTTTTTTGAATTTTCTTCTTCTTTTTGT
1950264 CTTTTTT
1 CTTTTTT
1950271 CTTCTTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 30 0.91
32 3 0.09
ACGTcount: A:0.04, C:0.13, G:0.04, T:0.78
Consensus pattern (31 bp):
CTTTTTTTTTGAATTTTCTTCTTCTTTTTGT
Found at i:1956811 original size:16 final size:15
Alignment explanation
Indices: 1956781--1956825 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
1956771 CTCTTTAAAC
* *
1956781 TTTTTTCTTTCTTTTG
1 TTTTTTATTT-TTTTA
1956797 TTTTTTATGTTTTTTA
1 TTTTTTAT-TTTTTTA
1956813 TTTTTTATTTTTT
1 TTTTTTATTTTTT
1956826 ACTAACCCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 5 0.19
16 19 0.73
17 2 0.08
ACGTcount: A:0.07, C:0.04, G:0.04, T:0.84
Consensus pattern (15 bp):
TTTTTTATTTTTTTA
Found at i:1958062 original size:17 final size:17
Alignment explanation
Indices: 1958040--1958072 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
1958030 GAGTTAATTT
1958040 ATAAATGAACTAGTTTG
1 ATAAATGAACTAGTTTG
1958057 ATAAATGAACTAGTTT
1 ATAAATGAACTAGTTT
1958073 AATGGACTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.36
Consensus pattern (17 bp):
ATAAATGAACTAGTTTG
Found at i:1965928 original size:90 final size:90
Alignment explanation
Indices: 1965775--1965952 Score: 313
Period size: 90 Copynumber: 2.0 Consensus size: 90
1965765 CCTAACACAC
*
1965775 CCTTTTATAGCCAAGTTACCCTAATTATATTAGGGTTTATATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTATATTATTTCAAATTAATTAAATCTAT
*
1965840 ATTTAATTAATTGAAATTTAATAAT
66 ATTTAATTAATTGAAATTAAATAAT
*
1965865 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGATTT-TATTATTTCAAATTAATTAAATCTA
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTATATTATTTCAAATTAATTAAATCTA
1965929 TATTTAATTAATTGAAATTAAATA
65 TATTTAATTAATTGAAATTAAATA
1965953 TTCAGGATTA
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
90 81 0.96
91 3 0.04
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (90 bp):
CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTATATTATTTCAAATTAATTAAATCTAT
ATTTAATTAATTGAAATTAAATAAT
Found at i:1972766 original size:90 final size:90
Alignment explanation
Indices: 1972613--1972790 Score: 311
Period size: 90 Copynumber: 2.0 Consensus size: 90
1972603 CCTAACACAC
*
1972613 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
* *
1972678 ATTTAATCAATTGGAATTTAATAAT
66 ATTTAATCAATTGAAATTAAATAAT
*
1972703 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
*
1972768 ATTTAATTAATTGAAATTAAATA
66 ATTTAATCAATTGAAATTAAATA
1972791 TTCAGGATTA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (90 bp):
CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
ATTTAATCAATTGAAATTAAATAAT
Found at i:1995594 original size:30 final size:30
Alignment explanation
Indices: 1995527--1995616 Score: 110
Period size: 30 Copynumber: 3.0 Consensus size: 30
1995517 TTTAATTCAG
1995527 CACTATAGTGTGCAAGGACACTTAGTGCAT
1 CACTATAGTGTGCAAGGACACTTAGTGCAT
* *
1995557 CATTATAGTGTGCAAGGACACTTAGTGTAGT
1 CACTATAGTGTGCAAGGACACTTAGTGCA-T
* * * *
1995588 -ACTATAGGGTCCAAGAACACTTTGTGCAT
1 CACTATAGTGTGCAAGGACACTTAGTGCAT
1995617 GTCTAATTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
29 1 0.02
30 49 0.96
31 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (30 bp):
CACTATAGTGTGCAAGGACACTTAGTGCAT
Found at i:1999077 original size:32 final size:29
Alignment explanation
Indices: 1999040--1999108 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 29
1999030 TATAAATTTG
*
1999040 AAAAGTTTATGGACCAAAAAGGGTAATTTTCC
1 AAAAGTTCA-GGACC-AAAAGGGTAATTTT-C
* *
1999072 AAAAGTACCAGGACCAAAAGTGTAATTTTC
1 AAAAGT-TCAGGACCAAAAGGGTAATTTTC
1999102 AAAAGTT
1 AAAAGTT
1999109 ATGTATTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
30 7 0.22
31 13 0.41
32 11 0.34
33 1 0.03
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.26
Consensus pattern (29 bp):
AAAAGTTCAGGACCAAAAGGGTAATTTTC
Found at i:2002060 original size:30 final size:30
Alignment explanation
Indices: 2002007--2002068 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
2001997 AGGTTTAATT
* *
2002007 CAACATTATACAGTGCAATGACACTTAGTG
1 CAACATTATACAGTCCAAGGACACTTAGTG
** *
2002037 CAACATTATAGTGTCCAAGGACACTTTGTG
1 CAACATTATACAGTCCAAGGACACTTAGTG
2002067 CA
1 CA
2002069 TGTTTAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (30 bp):
CAACATTATACAGTCCAAGGACACTTAGTG
Found at i:2002880 original size:22 final size:22
Alignment explanation
Indices: 2002854--2002948 Score: 70
Period size: 23 Copynumber: 4.3 Consensus size: 22
2002844 CACCACAGCT
*
2002854 CACATAATTTG-CACCAAAGTGC
1 CACATAATTTGTC-CCAAAGGGC
*
2002876 CACAT-ATTTGTCCCGAAGGGC
1 CACATAATTTGTCCCAAAGGGC
* *
2002897 CACATAGGA-TTGTCTCAAAGGAC
1 CACATA--ATTTGTCCCAAAGGGC
* * *
2002920 CACATAGGTTTGTCCCGAAGGAC
1 CACATA-ATTTGTCCCAAAGGGC
2002943 CACATA
1 CACATA
2002949 GAACCCTTGA
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
21 17 0.28
22 7 0.12
23 35 0.58
24 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (22 bp):
CACATAATTTGTCCCAAAGGGC
Found at i:2002917 original size:23 final size:23
Alignment explanation
Indices: 2002883--2002949 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
2002873 TGCCACATAT
* *
2002883 TTGTCCCGAAGGGCCACATAGGA
1 TTGTCCCAAAGGACCACATAGGA
* *
2002906 TTGTCTCAAAGGACCACATAGGT
1 TTGTCCCAAAGGACCACATAGGA
*
2002929 TTGTCCCGAAGGACCACATAG
1 TTGTCCCAAAGGACCACATAG
2002950 AACCCTTGAC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.21
Consensus pattern (23 bp):
TTGTCCCAAAGGACCACATAGGA
Found at i:2004523 original size:31 final size:31
Alignment explanation
Indices: 2004499--2004640 Score: 239
Period size: 31 Copynumber: 4.6 Consensus size: 31
2004489 CCATAGATTT
* *
2004499 CGAAGAACCTAGGTAATCAGTCCATATGTCC
1 CGAAGAACATAGGTAAACAGTCCATATGTCC
* *
2004530 TGAAGAACATAGGTAAACAGTCCATATGTCT
1 CGAAGAACATAGGTAAACAGTCCATATGTCC
2004561 CGAAGAACATAGGTAAACAGTCCATATGTCC
1 CGAAGAACATAGGTAAACAGTCCATATGTCC
*
2004592 CGAAGAACATTGGTAAACAGTCCATATGTCC
1 CGAAGAACATAGGTAAACAGTCCATATGTCC
2004623 CGAAGAACATAGGTAAAC
1 CGAAGAACATAGGTAAAC
2004641 CCTCGACCCT
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (31 bp):
CGAAGAACATAGGTAAACAGTCCATATGTCC
Found at i:2009726 original size:5 final size:6
Alignment explanation
Indices: 2009711--2009751 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
2009701 CAAAAGCAAC
* *
2009711 AAAAAT AAAAAT AAAAAG AAAGAAT AAAAAT AAAAAG AAAA
1 AAAAAT AAAAAT AAAAAT AAA-AAT AAAAAT AAAAAT AAAA
2009752 GAAAAAGACT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (6 bp):
AAAAAT
Found at i:2009736 original size:13 final size:12
Alignment explanation
Indices: 2009711--2009757 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 12
2009701 CAAAAGCAAC
*
2009711 AAAAATAAAAAT
1 AAAAAGAAAAAT
2009723 AAAAAGAAAGAAT
1 AAAAAGAAA-AAT
*
2009736 AAAAATAAAAA-
1 AAAAAGAAAAAT
*
2009747 GAAAAGAAAAA
1 AAAAAGAAAAA
2009758 GACTCCTACA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 9 0.30
12 10 0.33
13 11 0.37
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (12 bp):
AAAAAGAAAAAT
Found at i:2009738 original size:19 final size:19
Alignment explanation
Indices: 2009714--2009750 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
2009704 AAGCAACAAA
2009714 AATAAAAATAAAAAGAAAG
1 AATAAAAATAAAAAGAAAG
2009733 AATAAAAATAAAAAGAAA
1 AATAAAAATAAAAAGAAA
2009751 AGAAAAAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.11
Consensus pattern (19 bp):
AATAAAAATAAAAAGAAAG
Found at i:2010304 original size:22 final size:22
Alignment explanation
Indices: 2010279--2010320 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
2010269 AATTTTCTTG
*
2010279 GAGTGATCAAGTGAGGTTTTGT
1 GAGTGATCAAGTAAGGTTTTGT
* *
2010301 GAGTGTTCTAGTAAGGTTTT
1 GAGTGATCAAGTAAGGTTTT
2010321 CAATTCATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.05, G:0.33, T:0.40
Consensus pattern (22 bp):
GAGTGATCAAGTAAGGTTTTGT
Found at i:2018054 original size:21 final size:22
Alignment explanation
Indices: 2018036--2018132 Score: 124
Period size: 23 Copynumber: 4.3 Consensus size: 22
2018026 CATGGAAGTG
2018036 CCACATA-TTTGTCCCGAAGGA
1 CCACATAGTTTGTCCCGAAGGA
*
2018057 CCACATAGTTTTGTCTCGAAGGA
1 CCACATAG-TTTGTCCCGAAGGA
*
2018080 CCACATATGATTGTCCCGAAGGA
1 CCACATA-GTTTGTCCCGAAGGA
*
2018103 CCACATAGGTTTGTCCTGAAGGA
1 CCACATA-GTTTGTCCCGAAGGA
*
2018126 CTACATA
1 CCACATA
2018133 AAACCCTCGA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.11
23 58 0.88
24 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (22 bp):
CCACATAGTTTGTCCCGAAGGA
Found at i:2018097 original size:46 final size:44
Alignment explanation
Indices: 2018036--2018132 Score: 142
Period size: 46 Copynumber: 2.2 Consensus size: 44
2018026 CATGGAAGTG
*
2018036 CCACATATTTGTCCCGAAGGACCACATAGTTTTGT-CTCGAAGGA
1 CCACATATTTGTCCCGAAGGACCACATAGGTTTGTCCT-GAAGGA
2018080 CCACATATGATTGTCCCGAAGGACCACATAGGTTTGTCCTGAAGGA
1 CCACATAT--TTGTCCCGAAGGACCACATAGGTTTGTCCTGAAGGA
*
2018126 CTACATA
1 CCACATA
2018133 AAACCCTCGA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
44 8 0.17
46 38 0.79
47 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (44 bp):
CCACATATTTGTCCCGAAGGACCACATAGGTTTGTCCTGAAGGA
Found at i:2018819 original size:19 final size:20
Alignment explanation
Indices: 2018774--2018824 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
2018764 TTTTTAGCAA
*
2018774 TAGTATCGATACCTTACTCC
1 TAGTATCGATACCCTACTCC
*
2018794 TAGTATCGATACCCTACTTC
1 TAGTATCGATACCCTACTCC
2018814 -AGTATCGATAC
1 TAGTATCGATAC
2018825 TAATTCAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (20 bp):
TAGTATCGATACCCTACTCC
Done.