Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000761.1 Hibiscus syriacus cultivar Beakdansim tig00001478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5609167
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 23
Found at i:2329683 original size:23 final size:23
Alignment explanation
Indices: 2329643--2329700 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
2329633 TTCAAAACTA
*
2329643 TTTTCAAAAGCTATATATTATATG
1 TTTTCAAAA-CTATATATTATACG
2329667 TTTTCAAAACTATATATTATACG
1 TTTTCAAAACTATATATTATACG
2329690 TTTTCAAAACT
1 TTTTCAAAACT
2329701 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 24 0.73
24 9 0.27
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (23 bp):
TTTTCAAAACTATATATTATACG
Found at i:2340448 original size:25 final size:24
Alignment explanation
Indices: 2340420--2340469 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
2340410 TCTTTCATCC
*
2340420 TTAACTTTTTCTATTTTATTTTATT
1 TTAACTTTTACT-TTTTATTTTATT
*
2340445 TTAACTTTTACTTTTTCTTTTATT
1 TTAACTTTTACTTTTTATTTTATT
2340469 T
1 T
2340470 CCTCATCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (24 bp):
TTAACTTTTACTTTTTATTTTATT
Found at i:2348968 original size:40 final size:40
Alignment explanation
Indices: 2348924--2349032 Score: 200
Period size: 40 Copynumber: 2.7 Consensus size: 40
2348914 GGACACTAAG
*
2348924 TGTATATGGTGGGCACGACCTTATGTGTAATACATTTCGA
1 TGTATATGGTGGGCACGACCTTATGTGTAATACACTTCGA
*
2348964 TGTATATGGTGGGCACGACCTTATGTGTAATACACTTCGG
1 TGTATATGGTGGGCACGACCTTATGTGTAATACACTTCGA
2349004 TGTATATGGTGGGCACGACCTTATGTGTA
1 TGTATATGGTGGGCACGACCTTATGTGTA
2349033 GCACTACGGT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.34
Consensus pattern (40 bp):
TGTATATGGTGGGCACGACCTTATGTGTAATACACTTCGA
Found at i:2358191 original size:20 final size:20
Alignment explanation
Indices: 2358151--2358192 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2358141 GGACATGAAA
*
2358151 AATAAATAAGATAAATATAT
1 AATAAATAAGATAAAAATAT
2358171 AATAAATAA-ATAAAAATTAT
1 AATAAATAAGATAAAAA-TAT
2358191 AA
1 AA
2358193 AATAAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (20 bp):
AATAAATAAGATAAAAATAT
Found at i:2358211 original size:29 final size:33
Alignment explanation
Indices: 2358148--2358227 Score: 92
Period size: 33 Copynumber: 2.4 Consensus size: 33
2358138 TTTGGACATG
*
2358148 AAAAATAAATAAGATAAATATATAATAAATAAAT
1 AAAAAT-AATAAAATAAATATATAATAAATAAAT
*
2358182 AAAAATTATAAAATAAATTATATAAT-AAT-AAT
1 AAAAATAATAAAATAAA-TATATAATAAATAAAT
*
2358214 AATAATAATGAAAA
1 AAAAATAAT-AAAA
2358228 ACTATATTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 10 0.25
33 16 0.40
34 14 0.35
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (33 bp):
AAAAATAATAAAATAAATATATAATAAATAAAT
Found at i:2358344 original size:31 final size:31
Alignment explanation
Indices: 2358285--2358354 Score: 115
Period size: 31 Copynumber: 2.2 Consensus size: 31
2358275 ACCATTATAT
2358285 TATATATGTTTTCAAAATAGTTTTTAAAAAAC
1 TATATATGTTTTCAAAATAG-TTTTAAAAAAC
2358317 TATATATGTTTTCAAAACTA-TTTTAAAAAAC
1 TATATATGTTTTCAAAA-TAGTTTTAAAAAAC
2358348 TATATAT
1 TATATAT
2358355 TATAAGCTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
31 18 0.49
32 17 0.46
33 2 0.05
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (31 bp):
TATATATGTTTTCAAAATAGTTTTAAAAAAC
Found at i:2358388 original size:35 final size:36
Alignment explanation
Indices: 2358325--2358507 Score: 203
Period size: 35 Copynumber: 5.1 Consensus size: 36
2358315 ACTATATATG
*
2358325 TTTTCAAAACTATTTTAAAAAACTATATATTATAAGC
1 TTTTCAAAACTATTTT-AAAAACTATATATTATAAGT
* *
2358362 TTTT-AAAACTATTTTAAAAATTATATATTATACG-
1 TTTTCAAAACTATTTTAAAAACTATATATTATAAGT
** * *
2358396 TTTTCAAAACTATTTT-TTAATTATATATTATACGT
1 TTTTCAAAACTATTTTAAAAACTATATATTATAAGT
*
2358431 TTTT-AAAAATATTTTTAAAAAACTATATATTATAAGT
1 TTTTCAAAACTA-TTTT-AAAAACTATATATTATAAGT
** * *
2358468 TTTTCAAAACCGTTTCAAAAACTATATATTATATGT
1 TTTTCAAAACTATTTTAAAAACTATATATTATAAGT
2358504 TTTT
1 TTTT
2358508 TTTAAATAAG
Statistics
Matches: 126, Mismatches: 14, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
34 26 0.21
35 36 0.29
36 34 0.27
37 26 0.21
38 4 0.03
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (36 bp):
TTTTCAAAACTATTTTAAAAACTATATATTATAAGT
Found at i:2358403 original size:71 final size:72
Alignment explanation
Indices: 2358280--2358500 Score: 226
Period size: 69 Copynumber: 3.1 Consensus size: 72
2358270 TCAAAACCAT
*
2358280 TATATTATATATG-TTTTCAAAATAGTTTTTAAAAAAC--TATA-TAT--GTTTTCAAAACTATT
1 TATATTATA-A-GCTTTTAAAAATA-TTTTTAAAAAACTATATATTATAAGTTTTCAAAACTATT
2358339 TTAAAAAACTA
63 TT-AAAAACTA
* * *
2358350 TATATTATAAGCTTTTAAAACTA-TTTT-AAAAATTATATATTATACGTTTTCAAAACTATTTT-
1 TATATTATAAGCTTTTAAAAATATTTTTAAAAAACTATATATTATAAGTTTTCAAAACTATTTTA
** *
2358412 TTAATTA
66 AAAACTA
* * ** *
2358419 TATATTATACGTTTTTAAAAATATTTTTAAAAAACTATATATTATAAGTTTTTCAAAACCGTTTC
1 TATATTATAAGCTTTTAAAAATATTTTTAAAAAACTATATATTATAAG-TTTTCAAAACTATTTT
2358484 AAAAACTA
65 AAAAACTA
2358492 TATATTATA
1 TATATTATA
2358501 TGTTTTTTTT
Statistics
Matches: 124, Mismatches: 17, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
66 5 0.04
67 4 0.03
68 5 0.04
69 37 0.30
70 13 0.10
71 34 0.27
72 13 0.10
73 13 0.10
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.46
Consensus pattern (72 bp):
TATATTATAAGCTTTTAAAAATATTTTTAAAAAACTATATATTATAAGTTTTCAAAACTATTTTA
AAAACTA
Found at i:2358423 original size:34 final size:34
Alignment explanation
Indices: 2358278--2358477 Score: 151
Period size: 34 Copynumber: 5.7 Consensus size: 34
2358268 TTTCAAAACC
*
2358278 ATTATAT-TATATATGTTTTCAAAA-TAGTTTTTAA
1 ATTATATAT-TATACGTTTTCAAAACTA-TTTTTAA
* * *
2358312 A--AAACTA-TATATGTTTTCAAAACTATTTTAAAAA
1 ATTATA-TATTATACGTTTTCAAAACTATTTT--TAA
* * *
2358346 ACTATATATTATAAGCTTTT-AAAACTATTTTAAAA
1 ATTATATATTATACG-TTTTCAAAACTATTTT-TAA
*
2358381 ATTATATATTATACGTTTTCAAAACTATTTTTTA
1 ATTATATATTATACGTTTTCAAAACTATTTTTAA
* *
2358415 ATTATATATTATACGTTTTTAAAAATATTTTTAAAAA
1 ATTATATATTATACGTTTTCAAAACTATTTTT---AA
* *
2358452 ACTATATATTATAAGTTTTTCAAAAC
1 ATTATATATTATACG-TTTTCAAAAC
2358478 CGTTTCAAAA
Statistics
Matches: 137, Mismatches: 15, Indels: 24
0.78 0.09 0.14
Matches are distributed among these distances:
32 21 0.15
33 3 0.02
34 39 0.28
35 30 0.22
36 18 0.13
37 18 0.13
38 8 0.06
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.47
Consensus pattern (34 bp):
ATTATATATTATACGTTTTCAAAACTATTTTTAA
Found at i:2359020 original size:28 final size:28
Alignment explanation
Indices: 2358958--2359011 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
2358948 GATCCCAAAA
* *
2358958 AAATAAATAAATAAATAATTTAGTGCGC
1 AAATAAATAAATAAATAATCTAATGCGC
2358986 AAATAAATAAATAAATAATCTAATGC
1 AAATAAATAAATAAATAATCTAATGC
2359012 TTATATAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.28
Consensus pattern (28 bp):
AAATAAATAAATAAATAATCTAATGCGC
Found at i:2361507 original size:28 final size:28
Alignment explanation
Indices: 2361471--2361527 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
2361461 AACTTTAAAA
*
2361471 ACATAAAAAAATTTAAGATTGTATCTTT
1 ACATAAAAAAATTTAAGATGGTATCTTT
*
2361499 ACATCAAAAAATTTAAGATGGTATCTTT
1 ACATAAAAAAATTTAAGATGGTATCTTT
2361527 A
1 A
2361528 GGCAATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (28 bp):
ACATAAAAAAATTTAAGATGGTATCTTT
Found at i:2369142 original size:19 final size:20
Alignment explanation
Indices: 2369101--2369151 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
2369091 GAAACCCCTT
* *
2369101 TGAAAATTCATGATTTTTGA
1 TGAAAATACATGATTTTTAA
2369121 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
2369140 TGAAGATACATG
1 TGAAAATACATG
2369152 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:2372751 original size:22 final size:21
Alignment explanation
Indices: 2372720--2372776 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 21
2372710 GTCAACGGTC
*
2372720 AACGGCCGGGTCGGGTCGGGTT
1 AACGGTCGGGTCGGGTCGGG-T
* *
2372742 AACGGTCGGGCCGAGTCGGGT
1 AACGGTCGGGTCGGGTCGGGT
2372763 --CGGTCGGGTCGGGT
1 AACGGTCGGGTCGGGT
2372777 AAGATCGGTC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 12 0.40
21 1 0.03
22 17 0.57
ACGTcount: A:0.09, C:0.23, G:0.51, T:0.18
Consensus pattern (21 bp):
AACGGTCGGGTCGGGTCGGGT
Found at i:2379937 original size:5 final size:5
Alignment explanation
Indices: 2379927--2379951 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
2379917 AATGGTCAAC
2379927 GGTCG GGTCG GGTCG GGTCG GGTCG
1 GGTCG GGTCG GGTCG GGTCG GGTCG
2379952 ATCGGGTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (5 bp):
GGTCG
Found at i:2379987 original size:20 final size:20
Alignment explanation
Indices: 2379956--2380008 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
2379946 GGGTCGATCG
* *
2379956 GGTCAGACCGGTTC-AGACC
1 GGTCAAACCGGTTCAAAACC
2379975 GGTCAAAACCGGTTCAAAACC
1 GGTC-AAACCGGTTCAAAACC
2379996 GGTCAAACCGGTT
1 GGTCAAACCGGTT
2380009 TTCCAGCTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 4 0.13
20 18 0.60
21 8 0.27
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.17
Consensus pattern (20 bp):
GGTCAAACCGGTTCAAAACC
Found at i:2379993 original size:11 final size:10
Alignment explanation
Indices: 2379962--2380008 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
2379952 ATCGGGTCAG
*
2379962 ACCGGTTCAG
1 ACCGGTTCAA
2379972 ACCGG-TCAAA
1 ACCGGTTC-AA
2379982 ACCGGTTCAAA
1 ACCGGTTC-AA
2379993 ACCGG-TCAA
1 ACCGGTTCAA
2380002 ACCGGTT
1 ACCGGTT
2380009 TTCCAGCTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
9 9 0.27
10 14 0.42
11 10 0.30
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.17
Consensus pattern (10 bp):
ACCGGTTCAA
Found at i:2380005 original size:9 final size:9
Alignment explanation
Indices: 2379956--2380007 Score: 50
Period size: 10 Copynumber: 5.3 Consensus size: 9
2379946 GGGTCGATCG
*
2379956 GGTCAGACC
1 GGTCAAACC
*
2379965 GGTTCAGACC
1 GG-TCAAACC
2379975 GGTCAAAACC
1 GGTC-AAACC
2379985 GGTTCAAAACC
1 GG-TC-AAACC
2379996 GGTCAAACC
1 GGTCAAACC
2380005 GGT
1 GGT
2380008 TTTCCAGCTG
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
9 12 0.31
10 17 0.44
11 10 0.26
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (9 bp):
GGTCAAACC
Found at i:2381195 original size:22 final size:22
Alignment explanation
Indices: 2381151--2381196 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
2381141 CATTCTTCAG
* *
2381151 TTTCATTGTCTTTAAGTTGTTC
1 TTTCATTGTCTTCAAGTTATTC
2381173 TTTCATTGT-TTCAATGTTATTC
1 TTTCATTGTCTTCAA-GTTATTC
2381195 TT
1 TT
2381197 CAAGGTGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.15, C:0.13, G:0.11, T:0.61
Consensus pattern (22 bp):
TTTCATTGTCTTCAAGTTATTC
Found at i:2382580 original size:17 final size:18
Alignment explanation
Indices: 2382549--2382582 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2382539 GATGGTCTTG
*
2382549 ATGGATGATGTTGATGAA
1 ATGGATGATGGTGATGAA
2382567 ATGGA-GATGGTGATGA
1 ATGGATGATGGTGATGA
2382583 TGTTATATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.00, G:0.38, T:0.29
Consensus pattern (18 bp):
ATGGATGATGGTGATGAA
Found at i:2382962 original size:19 final size:20
Alignment explanation
Indices: 2382922--2382971 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
2382912 GAAACCCCTT
* *
2382922 TGAAAATTCAT-ATTTTTGA
1 TGAAAATACATGATTTTTAA
2382941 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
2382960 TGAAGATACATG
1 TGAAAATACATG
2382972 CTCTTGGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 26 0.96
20 1 0.04
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.38
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:2383553 original size:30 final size:31
Alignment explanation
Indices: 2383514--2383573 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
2383504 ACATGATGCC
***
2383514 ATGATATCTAAGTGATATGAAAACATAATAA
1 ATGATATCTAAAACATATGAAAACATAATAA
*
2383545 ATGA-ATCTAAAACATATGTAAACATAATA
1 ATGATATCTAAAACATATGAAAACATAATA
2383574 TAAAGCTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.28
Consensus pattern (31 bp):
ATGATATCTAAAACATATGAAAACATAATAA
Found at i:2384559 original size:14 final size:14
Alignment explanation
Indices: 2384540--2384577 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
2384530 AGTGTTGAAG
2384540 ACATTGATCATGAC
1 ACATTGATCATGAC
2384554 ACATTGATCATGAC
1 ACATTGATCATGAC
*
2384568 ACTTTGATCA
1 ACATTGATCA
2384578 GCCACCCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (14 bp):
ACATTGATCATGAC
Found at i:2395599 original size:21 final size:18
Alignment explanation
Indices: 2395555--2395590 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
2395545 CCACAATATC
2395555 GATACTCTATTGATGAGT
1 GATACTCTATTGATGAGT
2395573 GATACTCTATTGATGAGT
1 GATACTCTATTGATGAGT
2395591 ATTGATACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (18 bp):
GATACTCTATTGATGAGT
Found at i:2403112 original size:22 final size:22
Alignment explanation
Indices: 2403084--2403127 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
2403074 TGAAAGATGC
2403084 AGTTATAGCTCACGTGGACTGG
1 AGTTATAGCTCACGTGGACTGG
2403106 AGTTATAGCTCACGTGGACTGG
1 AGTTATAGCTCACGTGGACTGG
2403128 TGCAGTTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (22 bp):
AGTTATAGCTCACGTGGACTGG
Found at i:2405442 original size:39 final size:39
Alignment explanation
Indices: 2405393--2405531 Score: 192
Period size: 39 Copynumber: 3.6 Consensus size: 39
2405383 AAATAGCATA
2405393 AGGA-CCTGCGGTAAGGACTTACCCTGAGCACAAAACTG
1 AGGAGCCTGCGGTAAGGACTTACCCTGAGCACAAAACTG
* *
2405431 AGGAGCCTGCGGTAAGGACTTAACCTGAGCAC-AAAGTCG
1 AGGAGCCTGCGGTAAGGACTTACCCTGAGCACAAAACT-G
* * * *
2405470 ATGAGCCTACAGTAAGGACTTACCCTGAGCACAAAACCG
1 AGGAGCCTGCGGTAAGGACTTACCCTGAGCACAAAACTG
*
2405509 AGGAGTCTGCGGTAAGGACTTAC
1 AGGAGCCTGCGGTAAGGACTTAC
2405532 AATTCATAGA
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 8 0.09
39 75 0.87
40 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.27, T:0.17
Consensus pattern (39 bp):
AGGAGCCTGCGGTAAGGACTTACCCTGAGCACAAAACTG
Found at i:2411638 original size:14 final size:15
Alignment explanation
Indices: 2411596--2411638 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
2411586 CTTTGACTCA
2411596 ACCCATTGACT-TTG
1 ACCCATTGACTATTG
*
2411610 ACCCATTGACCATTG
1 ACCCATTGACTATTG
*
2411625 A-CCATTAACTATTG
1 ACCCATTGACTATTG
2411639 GCTGTTGACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 21 0.84
15 4 0.16
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.33
Consensus pattern (15 bp):
ACCCATTGACTATTG
Found at i:2420466 original size:37 final size:37
Alignment explanation
Indices: 2420425--2420496 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
2420415 GTTTATCTGC
*
2420425 TAGGATGATAAACCCAATTATCT-ATTGGTTCATCCGT
1 TAGGATGATAAACCCAATTA-CTGAATGGTTCATCCGT
* * *
2420462 TAGGATTATAAATCTAATTACTGAATGGTTCATCC
1 TAGGATGATAAACCCAATTACTGAATGGTTCATCC
2420497 TTTGGGCTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 2 0.07
37 28 0.93
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (37 bp):
TAGGATGATAAACCCAATTACTGAATGGTTCATCCGT
Found at i:2420623 original size:374 final size:374
Alignment explanation
Indices: 2420149--2420876 Score: 1136
Period size: 374 Copynumber: 1.9 Consensus size: 374
2420139 TGTTCCTTGT
* * *
2420149 TTAGTTCTACATGTGTGATATTTGAGTGTGTTATGTGTAAGATATGTTTGAATATTGAGGTTGTA
1 TTAGTTCTACATGTGTGATATTTGAATGTGTTATGTATAAGATATGTTTGAACATTGAGGTTGTA
** *
2420214 ATAAGTATATATATGTTATATATTTATCGATGTGTTTTTATATCAAACAATTGAACTATATTTTT
66 ATAAGTATATATATGTTATATATTTATCGATGTGTTTACATACCAAACAATTGAACTATATTTTT
*
2420279 TATCAGTGAACAAAGCATGTTGAATTGAATATGTTATGATTGTTTATCTTTAATATGAGCATATA
131 TATCAGTGAACAAAGCATGATGAATTGAATATGTTATGATTGTTTATCTTTAATATGAGCATATA
* * * *
2420344 AATTATTCATACCATTTCA-TATGTTGCATCGATATGGGATAGTGTTACAGTAGTGACCAAATTA
196 AATTATTCAAACCATTT-AGTATGTTACATCGATATGGGATAGCGTTACAATAGTGACCAAATTA
* * * * ** * *
2420408 CTGACTAG-TTTATCTGCTAGGATGATAAACCCAATTATCTATTGGTTCATCCGTTAGGATTATA
260 CCGAC-AGATTCATCTACTAGAATGATAAACAAAATTATCAATTGGTTCATCCGTTAGGATGATA
2420472 AATCTAATTACTGAATGGTTCATCCTTTGGGCTCTACTGTAACGCTATCAG
324 AATCTAATTACTGAATGGTTCATCCTTTGGGCTCTACTGTAACGCTATCAG
* * *
2420523 TTAGTTCTACATGTGTGATATTTGAATGTGTTATGTATATGATATGTTTTAACATTGAGGTTGTG
1 TTAGTTCTACATGTGTGATATTTGAATGTGTTATGTATAAGATATGTTTGAACATTGAGGTTGTA
* *
2420588 ATAAGTATATCTATGTTATATATTTATCGATGTGTTTACATACCGAACAATTGAACTATATTTTT
66 ATAAGTATATATATGTTATATATTTATCGATGTGTTTACATACCAAACAATTGAACTATATTTTT
* * *
2420653 TATCAGTGAACAGAGCATGATGAATTGCATATGTTATGATTGTTTATCTTTAATATGAGTATATA
131 TATCAGTGAACAAAGCATGATGAATTGAATATGTTATGATTGTTTATCTTTAATATGAGCATATA
* *
2420718 CATTATTCAAACCATTTAGTATGTTACATCGATATGGGATAGCGTTACAATAGTGACCGAATTAC
196 AATTATTCAAACCATTTAGTATGTTACATCGATATGGGATAGCGTTACAATAGTGACCAAATTAC
* * *
2420783 CGACCGATTCATCTATTAGAATGATAAACAAAATTATCAATTGGTTCATCTGTTAGGATGATAAA
261 CGACAGATTCATCTACTAGAATGATAAACAAAATTATCAATTGGTTCATCCGTTAGGATGATAAA
2420848 TCTAATTACTGAATGGTTCATCCTTTGGG
326 TCTAATTACTGAATGGTTCATCCTTTGGG
2420877 ATGGTAAAGC
Statistics
Matches: 320, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
373 2 0.01
374 318 0.99
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (374 bp):
TTAGTTCTACATGTGTGATATTTGAATGTGTTATGTATAAGATATGTTTGAACATTGAGGTTGTA
ATAAGTATATATATGTTATATATTTATCGATGTGTTTACATACCAAACAATTGAACTATATTTTT
TATCAGTGAACAAAGCATGATGAATTGAATATGTTATGATTGTTTATCTTTAATATGAGCATATA
AATTATTCAAACCATTTAGTATGTTACATCGATATGGGATAGCGTTACAATAGTGACCAAATTAC
CGACAGATTCATCTACTAGAATGATAAACAAAATTATCAATTGGTTCATCCGTTAGGATGATAAA
TCTAATTACTGAATGGTTCATCCTTTGGGCTCTACTGTAACGCTATCAG
Found at i:2420855 original size:37 final size:37
Alignment explanation
Indices: 2420790--2420869 Score: 92
Period size: 37 Copynumber: 2.2 Consensus size: 37
2420780 TACCGACCGA
2420790 TTCATCTATTAGAATGATAAACAAAATTA-TCAATTGG
1 TTCATCTATTAGAATGATAAACAAAATTACTCAA-TGG
* * * *
2420827 TTCATCTGTTAGGATGATAAATC-TAATTACTGAATGG
1 TTCATCTATTAGAATGATAAA-CAAAATTACTCAATGG
2420864 TTCATC
1 TTCATC
2420870 CTTTGGGATG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
37 33 0.89
38 4 0.11
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (37 bp):
TTCATCTATTAGAATGATAAACAAAATTACTCAATGG
Found at i:2430009 original size:55 final size:55
Alignment explanation
Indices: 2429347--2430008 Score: 943
Period size: 55 Copynumber: 12.0 Consensus size: 55
2429337 CCTCAAAAGC
* * * * *
2429347 CGCGTCAGCTCCCTATTCCTTCAGAGAATATAAGACTCAAACAATCTTCAA-AGAA
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACA-AT
* *
2429402 CGTGTCTGCTCCCTATTTCTTCAGGGAGTATAAGACTCGAACAATCTTCAACAAT
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
* * * * *
2429457 CGCGTCTGCTCCCTGTTTCTTCATAGAGTATAAGACTCGAACAATCTTTAAAAAA
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
** * * *
2429512 CGTATCCGCTCCTTATTTATTCAG-GAAGTATAAGACTCGAACAATCTTCAACAAT
1 CGCGTCTGCTCCCTATTTCTTCAGAG-AGTATAAGACTCGAACAATCTTCAACAAT
* *
2429567 CGCGTATGCTCCCTATTTCTTCTGAGAGTATAAGACTCGAACAATCTTCAACAAT
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
* * *
2429622 CGCATCTACTCCCTATTTCTTCAGAGAGTATAAGACTCAAACAATCTTCAACAAT
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
2429677 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
** *
2429732 CGCACCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGACCAATCTTCAACAAT
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
* * *
2429787 CACGCCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGACCAATCTTCAACGAA-
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAAC-AAT
* *
2429842 CGTGCCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
** * *
2429897 CATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTGAATAAT
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
* * *
2429952 CGTGTATGCTCTCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
1 CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
2430007 CG
1 CG
2430009 TTGGGGGACC
Statistics
Matches: 546, Mismatches: 56, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
54 3 0.01
55 539 0.99
56 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (55 bp):
CGCGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAT
Found at i:2436303 original size:20 final size:19
Alignment explanation
Indices: 2436278--2436390 Score: 90
Period size: 20 Copynumber: 5.8 Consensus size: 19
2436268 ACTAAGTCAA
*
2436278 GAGTATCGATATTCTACCTT
1 GAGTATCGATA-TCTAACTT
* *
2436298 GAGTATTGATACCTAACTAT
1 GAGTATCGATATCTAACT-T
*
2436318 GAGTATCGATA-CTAAACTA
1 GAGTATCGATATCT-AACTT
*
2436337 G-GTATCGATATTCTACCTT
1 GAGTATCGATA-TCTAACTT
*
2436356 GAGTATTGATA-CTTAACTAT
1 GAGTATCGATATC-TAACT-T
2436376 GAGTATCGATA-CTAA
1 GAGTATCGATATCTAA
2436391 ATTAGGGGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
18 10 0.13
19 19 0.25
20 47 0.62
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
GAGTATCGATATCTAACTT
Found at i:2436350 original size:58 final size:58
Alignment explanation
Indices: 2436280--2436396 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
2436270 TAAGTCAAGA
2436280 GTATCGATATTCTACCTTGAGTATTGATACCTAACTATGAGTATCGATACTAAACTAG
1 GTATCGATATTCTACCTTGAGTATTGATACCTAACTATGAGTATCGATACTAAACTAG
* *
2436338 GTATCGATATTCTACCTTGAGTATTGATACTTAACTATGAGTATCGATACTAAATTAG
1 GTATCGATATTCTACCTTGAGTATTGATACCTAACTATGAGTATCGATACTAAACTAG
2436396 G
1 G
2436397 GGTATCGGTA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.36
Consensus pattern (58 bp):
GTATCGATATTCTACCTTGAGTATTGATACCTAACTATGAGTATCGATACTAAACTAG
Found at i:2436471 original size:20 final size:21
Alignment explanation
Indices: 2436448--2436486 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
2436438 TTCAATGTCG
2436448 ATTTTACATGAA-CAATATTA
1 ATTTTACATGAATCAATATTA
**
2436468 ATTTTGTATGAATCAATAT
1 ATTTTACATGAATCAATAT
2436487 GAATACTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (21 bp):
ATTTTACATGAATCAATATTA
Found at i:2436777 original size:14 final size:14
Alignment explanation
Indices: 2436752--2436788 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
2436742 AAAAAAATCA
2436752 AAATTA-GAGATTT
1 AAATTACGAGATTT
2436765 AAATTACGAGATTT
1 AAATTACGAGATTT
2436779 AAATTACGAG
1 AAATTACGAG
2436789 TCATGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.26
14 17 0.74
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.32
Consensus pattern (14 bp):
AAATTACGAGATTT
Found at i:2438569 original size:15 final size:15
Alignment explanation
Indices: 2438549--2438579 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2438539 TCGAAACCAA
*
2438549 CCCCTTTCTCTCTCC
1 CCCCTTTCTCTATCC
2438564 CCCCTTTCTCTATCC
1 CCCCTTTCTCTATCC
2438579 C
1 C
2438580 TCCCCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.03, C:0.58, G:0.00, T:0.39
Consensus pattern (15 bp):
CCCCTTTCTCTATCC
Found at i:2439185 original size:12 final size:11
Alignment explanation
Indices: 2439156--2439181 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
2439146 TTTAAAAAAA
2439156 TTAATAATTTT
1 TTAATAATTTT
2439167 TTAATAATTTT
1 TTAATAATTTT
2439178 TTAA
1 TTAA
2439182 ATAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTAATAATTTT
Found at i:2439204 original size:32 final size:29
Alignment explanation
Indices: 2439124--2439193 Score: 90
Period size: 27 Copynumber: 2.4 Consensus size: 29
2439114 CTATTTATCT
2439124 TAAAAATAATAATTTTAAT-TTTTTTAAA
1 TAAAAATAATAATTTTAATATTTTTTAAA
*
2439152 -AAAATTAATAATTTTTTAATAATTTTTTAAA
1 TAAAAATAATAA--TTTTAAT-ATTTTTTAAA
2439183 TAAAAATAATA
1 TAAAAATAATA
2439194 TATATATAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 10 0.29
29 7 0.20
31 9 0.26
32 9 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
TAAAAATAATAATTTTAATATTTTTTAAA
Found at i:2439327 original size:26 final size:27
Alignment explanation
Indices: 2439280--2439332 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
2439270 ATATTATTAT
*
2439280 TTAAAATAAATAAGACTAATAAAAATA
1 TTAAAATAAATAAAACTAATAAAAATA
* *
2439307 TTAAAA-AAATAAAATTGATAAAAATA
1 TTAAAATAAATAAAACTAATAAAAATA
2439333 ATTACTTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (27 bp):
TTAAAATAAATAAAACTAATAAAAATA
Found at i:2439557 original size:59 final size:57
Alignment explanation
Indices: 2439463--2439590 Score: 195
Period size: 59 Copynumber: 2.2 Consensus size: 57
2439453 AATCTCAGAT
* * *
2439463 ATAATTAATTTA-TTAAATCTGTTTTGGTTCAAACTCAAAACATTAAAAGTAAAAAA
1 ATAATTAATTTATTTAAACCTATTTTGATTCAAACTCAAAACATTAAAAGTAAAAAA
*
2439519 TTAATTAATTTATTACTAAACCTATTTTGATTCAAACTCAAAACATTAAAAGTAAAAAA
1 ATAATTAATTTATT--TAAACCTATTTTGATTCAAACTCAAAACATTAAAAGTAAAAAA
2439578 ATAATTAATTTAT
1 ATAATTAATTTAT
2439591 AATTGTGTCT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
56 11 0.17
57 1 0.02
59 52 0.81
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (57 bp):
ATAATTAATTTATTTAAACCTATTTTGATTCAAACTCAAAACATTAAAAGTAAAAAA
Found at i:2445417 original size:29 final size:29
Alignment explanation
Indices: 2445379--2445447 Score: 85
Period size: 28 Copynumber: 2.5 Consensus size: 29
2445369 AAAAAAATTA
*
2445379 ATTAAATAAAATATTAAAAAAT-TTAAAT
1 ATTAAATAAAATATAAAAAAATATTAAAT
2445407 ACTTAAAT-AAAT-TAAAAAAATATTAAAT
1 A-TTAAATAAAATATAAAAAAATATTAAAT
2445435 A-T-AATAAAATATA
1 ATTAAATAAAATATA
2445448 CCTTAAACAG
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
25 3 0.08
26 5 0.14
27 10 0.28
28 12 0.33
29 6 0.17
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (29 bp):
ATTAAATAAAATATAAAAAAATATTAAAT
Found at i:2445441 original size:25 final size:25
Alignment explanation
Indices: 2445369--2445442 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 25
2445359 TTATATATAC
*
2445369 AAAAAAATTAATTAAATA-AA-ATATT
1 AAAAAAA-T-ATTAAATATAATAAATT
2445394 -AAAAAAT-TTAAATACTTAAATAAATT
1 AAAAAAATATTAAATA--T-AATAAATT
2445420 AAAAAAATATTAAATATAATAAA
1 AAAAAAATATTAAATATAATAAA
2445443 ATATACCTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
21 7 0.17
23 1 0.02
24 6 0.15
25 8 0.20
26 5 0.12
27 7 0.17
28 7 0.17
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (25 bp):
AAAAAAATATTAAATATAATAAATT
Found at i:2445442 original size:20 final size:21
Alignment explanation
Indices: 2445403--2445443 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
2445393 TAAAAAATTT
2445403 AAATACTTAAATAAATTAAAA
1 AAATACTTAAATAAATTAAAA
2445424 AAATA-TTAAATATAA-TAAAA
1 AAATACTTAAATA-AATTAAAA
2445444 TATACCTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATACTTAAATAAATTAAAA
Found at i:2445445 original size:17 final size:16
Alignment explanation
Indices: 2445370--2445446 Score: 57
Period size: 16 Copynumber: 4.4 Consensus size: 16
2445360 TATATATACA
* *
2445370 AAAAAATTAATTAAAT
1 AAAATATTAAATAAAT
2445386 AAAATATTAAA-AAATT
1 AAAATATTAAATAAA-T
*
2445402 TAAATACTTAAATAAATT
1 AAAATA-TTAAATAAA-T
2445420 AAAAAAATATTAAATATAAT
1 ---AAAATATTAAATA-AAT
2445440 AAAATAT
1 AAAATAT
2445447 ACCTTAAACA
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
15 3 0.06
16 15 0.30
17 12 0.24
18 5 0.10
20 8 0.16
21 7 0.14
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (16 bp):
AAAATATTAAATAAAT
Found at i:2448286 original size:12 final size:11
Alignment explanation
Indices: 2448262--2448300 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 11
2448252 GATATAATAA
2448262 TATAATATAATT
1 TATAATAT-ATT
2448274 TATAAATATATT
1 TAT-AATATATT
2448286 TATAATAATATT
1 TATAAT-ATATT
2448298 TAT
1 TAT
2448301 TCAAACATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.12
12 17 0.68
13 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
TATAATATATT
Found at i:2451205 original size:28 final size:28
Alignment explanation
Indices: 2451149--2451270 Score: 95
Period size: 30 Copynumber: 4.2 Consensus size: 28
2451139 AGATTTTTCG
* *
2451149 TATATTATAT-TTTAAGATATATATATATA
1 TATATAATATATTTAA-AAATATATATA-A
*
2451178 TATTATAATATATTTGAAAATATATATAGGA
1 TA-TATAATATATTTAAAAATATATATA--A
* * *
2451209 TATGTATTAAATTTAAAAATATATATAA
1 TATATAATATATTTAAAAATATATATAA
* * *
2451237 TATAGTAATATATATAATATTA-ATATAA
1 TATA-TAATATATTTAAAAATATATATAA
2451265 TATATA
1 TATATA
2451271 TAGTTTTACA
Statistics
Matches: 75, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
27 2 0.03
28 14 0.19
29 14 0.19
30 38 0.51
31 7 0.09
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (28 bp):
TATATAATATATTTAAAAATATATATAA
Found at i:2451248 original size:17 final size:17
Alignment explanation
Indices: 2451226--2451274 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
2451216 TAAATTTAAA
2451226 AATATATATAATATAGT
1 AATATATATAATATAGT
2451243 AATATATATAATAT--T
1 AATATATATAATATAGT
2451258 AATATA-ATATATATAGT
1 AATATATATA-ATATAGT
2451275 TTTACATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.10
15 11 0.38
17 15 0.52
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (17 bp):
AATATATATAATATAGT
Found at i:2451262 original size:32 final size:32
Alignment explanation
Indices: 2451226--2451336 Score: 108
Period size: 32 Copynumber: 3.5 Consensus size: 32
2451216 TAAATTTAAA
2451226 AATATATATA-ATATAGTAATATATATAATATT
1 AATATATATATATATAGT-ATATATATAATATT
* *
2451258 AATATA-ATATATATAGT-TTTACAT-ATATAT
1 AATATATATATATATAGTATATATATAATAT-T
*
2451288 ACACTATAT-TATATATAGTATATATTACAAT-TT
1 A-A-TATATATATATATAGTATATA-TATAATATT
2451321 AATATATATATATATA
1 AATATATATATATATA
2451337 TAGTTTTGAA
Statistics
Matches: 65, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
29 4 0.06
30 7 0.11
31 9 0.14
32 36 0.55
33 5 0.08
34 2 0.03
35 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.45
Consensus pattern (32 bp):
AATATATATATATATAGTATATATATAATATT
Found at i:2451370 original size:69 final size:64
Alignment explanation
Indices: 2451227--2451371 Score: 156
Period size: 64 Copynumber: 2.2 Consensus size: 64
2451217 AAATTTAAAA
* * *
2451227 ATATATATA-ATATAGTAATATATATAATATTAATATAATATATATAGTTTTACATATATATAC
1 ATATATATATATATAGTAATATATACAATATTAATATAATATATATAGTTTTAAAAATATATAC
2451290 ACTATAT-TATATATAGT-ATATATTACAAT-TTAATATATATATATATATAGTTTTGAAAAATA
1 A-TATATATATATATAGTAATATA-TACAATATT-A-ATATA-ATATATATAGTTTT-AAAAATA
2451352 TATA-
60 TATAC
*
2451356 TTATATAGTATATATA
1 ATATATA-TATATATA
2451372 CGATATTACA
Statistics
Matches: 69, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
63 10 0.14
64 18 0.26
65 10 0.14
66 14 0.20
67 17 0.25
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.46
Consensus pattern (64 bp):
ATATATATATATATAGTAATATATACAATATTAATATAATATATATAGTTTTAAAAATATATAC
Found at i:2451425 original size:2 final size:2
Alignment explanation
Indices: 2451165--2451406 Score: 74
Period size: 2 Copynumber: 125.5 Consensus size: 2
2451155 ATATTTTAAG
* *
2451165 AT AT AT AT AT AT AT AT -T AT A- AT AT AT TT GA- AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
* * * * * *
2451205 AGG AT AT GT AT -T AA AT TT AA AA AT AT AT AT A- AT AT AGT A- AT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
* *
2451246 AT AT AT A- AT AT -T A- AT AT A- AT AT AT AT AGT -T TT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
* * *
2451284 AT AT AC ACT AT AT -T AT AT AT AGT AT AT AT -T AC A- AT TT A- AT
1 AT AT AT A-T AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT
* * *
2451324 AT AT AT AT AT AT AT AGT -T TT GAA AA AT AT AT AT -T AT AT AGT
1 AT AT AT AT AT AT AT A-T AT AT -AT AT AT AT AT AT AT AT AT A-T
* * *
2451365 AT AT AT ACG AT AT -T AC AT AGT AT -T AT A- AT AT AT AA AT AT AT
1 AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT
2451406 A
1 A
2451407 GGTTTTAGGA
Statistics
Matches: 179, Mismatches: 30, Indels: 62
0.66 0.11 0.23
Matches are distributed among these distances:
1 20 0.11
2 146 0.82
3 13 0.07
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.44
Consensus pattern (2 bp):
AT
Found at i:2452708 original size:20 final size:21
Alignment explanation
Indices: 2452677--2452716 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
2452667 GTAAGTTTAG
2452677 GTTTTAATTTATGTTTGATTC
1 GTTTTAATTTATGTTTGATTC
2452698 GTTTT-ATTTATGTTTGATT
1 GTTTTAATTTATGTTTGATT
2452717 TTTTTCTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.17, C:0.03, G:0.15, T:0.65
Consensus pattern (21 bp):
GTTTTAATTTATGTTTGATTC
Found at i:2454573 original size:81 final size:81
Alignment explanation
Indices: 2454433--2455487 Score: 1362
Period size: 81 Copynumber: 13.0 Consensus size: 81
2454423 TTGAAAGAGT
* * ** *
2454433 TGTGCATTTGACAGAAAGTTACCAATTATGCCAGTTAGATAAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
2454498 ATATTAATAGCCTAGC
66 AGATTAATAGCCTAGC
* * * *
2454514 TGTTCATTTGGTAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACTTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
** *
2454579 AGATTAATAGTGTAGT
66 AGATTAATAGCCTAGC
* * * *
2454595 TGTGCATTTGACAAAAAGATGTCAATTATGCCAGTTAGATGAAATGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
2454660 AGATTAATAGCCTAGT
66 AGATTAATAGCCTAGC
* * ** * *
2454676 TGTGTATTTGGCATAAAGACGTCAATTATGCCAATTAGATGAAAGGTTAAATACATTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
2454741 AGATTAATTGCCTAGC
66 AGATTAATAGCCTAGC
* * *
2454757 TGTGCATTTGGCAGAAAGGTGTCAATTTTTCCAGTTAGATGAAAGTTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
2454822 AGATTAATAGCCTAGC
66 AGATTAATAGCCTAGC
* * * *
2454838 TGTGCATTTGACATAAATGTGTCAATTATGCCAGTTAGATGAAAGTTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
2454903 AGATGAATGGCCTAGT
66 AGATTAATAGCCTAGC
* * * ** *
2454919 TGTGTATTTGGGAGAAGGGTGTCAATTATGTTAGTTAGATGAAATGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * **
2454984 TGATTAATGGCCTAAT
66 AGATTAATAGCCTAGC
* * * *
2455000 TGTGCATTTAGTAGAAATGTGTTAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAG-AAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
2455064 AAATTTAATAACCTAGA
66 AGA-TTAATAGCCTAGC
* ** * * *
2455081 TGTGTATTTGATAGAAAGATGTCAATTATGCTAGTTAGATGAAATGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
2455146 AGATTAATGGCCTAGC
66 AGATTAATAGCCTAGC
* *
2455162 TGTGCATTTGGCAGAAAGATGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGAAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
2455227 AGATTAATATCAC-AGT
66 AGATTAATAGC-CTAGC
** * *
2455243 TGTGCATTTGATAGAAAGGTGTCAATTACGCCAGTTAGATGAAATGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
2455308 AGATTAATGGCCTAGC
66 AGATTAATAGCCTAGC
*
2455324 TGTGCATTTGGCAGAAAGGTGTCAATTATG-CAGTTAGATCAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
2455388 AGATTAATGGCCTAGT
66 AGATTAATAGCCTAGC
* * * * *
2455404 TGTGCATTTGGCATAACGGTGTCAATTA-GACCAATTAGATGAAATGTTAAATACCTTTGAGAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATG-CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
2455468 AAGATTAATGGCCTAGC
65 AAGATTAATAGCCTAGC
2455485 TGT
1 TGT
2455488 ATATTGGACA
Statistics
Matches: 847, Mismatches: 121, Indels: 12
0.86 0.12 0.01
Matches are distributed among these distances:
79 1 0.00
80 78 0.09
81 762 0.90
82 6 0.01
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.33
Consensus pattern (81 bp):
TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
AGATTAATAGCCTAGC
Found at i:2462080 original size:47 final size:45
Alignment explanation
Indices: 2461966--2462082 Score: 110
Period size: 47 Copynumber: 2.6 Consensus size: 45
2461956 TTTCATTTGG
* * * * *
2461966 GGCATCCTTTCATGCC-CATTATGTATTGTTTACGTTTTCCATTAT
1 GGCATCCTTTCATACCAC-TTATGCATTGTTTACATTATACATTAT
* * * * *
2462011 GACATCCATTCATATCAATTATGCATTGTTGTACATTATAGATATAT
1 GGCATCCTTTCATACCACTTATGCATTGTT-TACATTATACAT-TAT
2462058 GGCATCCTTTCATACCACTTATGCA
1 GGCATCCTTTCATACCACTTATGCA
2462083 CCGTTTATAT
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
45 23 0.42
46 8 0.15
47 24 0.44
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (45 bp):
GGCATCCTTTCATACCACTTATGCATTGTTTACATTATACATTAT
Found at i:2462253 original size:81 final size:81
Alignment explanation
Indices: 2462113--2462447 Score: 499
Period size: 81 Copynumber: 4.1 Consensus size: 81
2462103 TATAAATTCT
* * * * * * * * *
2462113 TTAATCTTTTACCCAAAGGCATTTAGCCTTTCATCTAACTTGTATGATTGAAACTTTTCTTCCAA
1 TTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
*
2462178 ATCCACAGCTAGGCCA
66 ATGCACAGCTAGGCCA
* *
2462194 TTAATCTTTTACTCATAGGTATTTAACCTTACATCTAACTGGCATAATTGACACCTTTCTGCCAA
1 TTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
*
2462259 ATGCACAACTAGGCCA
66 ATGCACAGCTAGGCCA
* * *
2462275 TTAATCTTTTACTCAAAAGTATTTAACCTTTTATCTAACTGGCATAATTGGCACCTTTCTGCCAA
1 TTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
*
2462340 ATGCACAGCTTGGCCA
66 ATGCACAGCTAGGCCA
* *
2462356 TTAATCTTTTACTCAAAGGGATTTAACCTTTCATCTAACTGTCATAATTGACACCTTTCTGCCAA
1 TTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
2462421 ATGCACAGCTAGGCCA
66 ATGCACAGCTAGGCCA
2462437 TTAATCTTTTA
1 TTAATCTTTTA
2462448 TTTTAGAACT
Statistics
Matches: 228, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 228 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (81 bp):
TTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
ATGCACAGCTAGGCCA
Found at i:2482634 original size:129 final size:129
Alignment explanation
Indices: 2482399--2482656 Score: 462
Period size: 129 Copynumber: 2.0 Consensus size: 129
2482389 TAAGTGTTAA
*
2482399 ACTTTATAATTGATGAGCCTTTATGTTTTATTTGGTTGGATTTAACGAATGTATTTGAGAATTGT
1 ACTTTATAATTGATGAGCCTTTATGTTTTATTTGGTTAGATTTAACGAATGTATTTGAGAATTGT
* * * *
2482464 GAGATATTGATGTATGAATGTATAAATTGGGGCATTCAATGTTGAATATTAATTATGGAATGCT
66 GACATATTGATGTATAAATGTATAAATTGGGGCATTAAATGTTGAATATTAATTATGAAATGCT
2482528 ACTTTATAATTGATGAGCCTTTATGTTTTATTTGGTTAGATTTAACGAATGTATTTGAGAATTGT
1 ACTTTATAATTGATGAGCCTTTATGTTTTATTTGGTTAGATTTAACGAATGTATTTGAGAATTGT
*
2482593 GACATATTGATGTATAAATGTATAAATTGGGGTATTAAATGTTGAATATTAATTATGAAATGCT
66 GACATATTGATGTATAAATGTATAAATTGGGGCATTAAATGTTGAATATTAATTATGAAATGCT
2482657 GAATTTTAAG
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 123 1.00
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (129 bp):
ACTTTATAATTGATGAGCCTTTATGTTTTATTTGGTTAGATTTAACGAATGTATTTGAGAATTGT
GACATATTGATGTATAAATGTATAAATTGGGGCATTAAATGTTGAATATTAATTATGAAATGCT
Found at i:2484427 original size:2 final size:2
Alignment explanation
Indices: 2484420--2484457 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
2484410 AGTTATGTTC
2484420 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2484458 TATGTTTTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2485283 original size:80 final size:79
Alignment explanation
Indices: 2485190--2485569 Score: 412
Period size: 80 Copynumber: 4.8 Consensus size: 79
2485180 TCGGCTCATT
*
2485190 CATCACAATAAGGAGTTGGATCAGCATTTCCAAGAGAAGAAGTTCATAATGAGAATGACTTGTTC
1 CATCAC-ATAAGGAGTTGGATCAACATTTCCAAGAGAAGAAGTTCATAATGAGAA-GACTTGTTC
2485255 AACCTTTGCTTGATTC
64 AACCTTTGCTTGATTC
** * * *
2485271 CATCACATAAGGAGTT-GAGTCAGTATTTTCCAA-AGGAGAAGTTTATAATGAGAAAAACTTGTT
1 CATCACATAAGGAGTTGGA-TCAACA-TTTCCAAGAGAAGAAGTTCATAATGAG-AAGACTTGTT
*
2485334 CAACCTTGGCTAT-ATTC
63 CAACCTTTGCT-TGATTC
* * * * * *
2485351 CATTACAGAAGGAGTTGGATCAACATTTCTAAGAGAAGAAGTTCATTATGAGAAGAACTTTTTGA
1 CATCACATAAGGAGTTGGATCAACATTTCCAAGAGAAGAAGTTCATAATGAGAAG-ACTTGTTCA
* *
2485416 ACCTTTACTCGATTC
65 ACCTTTGCTTGATTC
* * * ** * *
2485431 TATCACATAAGGAGTTGGAT-AATCATTTCCAAGAAAATAAACTCATAATGAG-A-ACTTCTTTA
1 CATCACATAAGGAGTTGGATCAA-CATTTCCAAGAGAAGAAGTTCATAATGAGAAGACTTGTTCA
* *
2485493 AACTTTTCTTGATTC
65 ACCTTTGCTTGATTC
*
2485508 CATCACAAAAGGAGTTGGATCAACATTTCCAAGAGAAGAAGTTCATAATGAGAAGAACTTGT
1 CATCACATAAGGAGTTGGATCAACATTTCCAAGAGAAGAAGTTCATAATGAGAAG-ACTTGT
2485570 AGCTCAAGAA
Statistics
Matches: 246, Mismatches: 40, Indels: 27
0.79 0.13 0.09
Matches are distributed among these distances:
77 62 0.25
78 3 0.01
79 13 0.05
80 150 0.61
81 18 0.07
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (79 bp):
CATCACATAAGGAGTTGGATCAACATTTCCAAGAGAAGAAGTTCATAATGAGAAGACTTGTTCAA
CCTTTGCTTGATTC
Found at i:2488747 original size:10 final size:10
Alignment explanation
Indices: 2488727--2488760 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
2488717 ATTACTAACT
2488727 AAAAATGATAA
1 AAAAAT-ATAA
2488738 AAAAATATAA
1 AAAAATATAA
2488748 AAAAATA-AA
1 AAAAATATAA
2488757 AAAA
1 AAAA
2488761 TCAGAATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 6 0.26
10 11 0.48
11 6 0.26
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (10 bp):
AAAAATATAA
Found at i:2493862 original size:25 final size:27
Alignment explanation
Indices: 2493817--2493872 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 27
2493807 TTGAGTATTT
*
2493817 TCTCTTATTTGAAATTGTGA-TTGTTA
1 TCTCTTATTTGAAATTATGATTTGTTA
2493843 TCTC-TATTT-AAATGTATGATTTTGTTA
1 TCTCTTATTTGAAAT-TATGA-TTTGTTA
2493870 TCT
1 TCT
2493873 AAAGTGAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 4 0.15
25 9 0.35
26 4 0.15
27 9 0.35
ACGTcount: A:0.23, C:0.09, G:0.12, T:0.55
Consensus pattern (27 bp):
TCTCTTATTTGAAATTATGATTTGTTA
Found at i:2498193 original size:19 final size:19
Alignment explanation
Indices: 2498164--2498208 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
2498154 ATAGTGAATT
2498164 GTAGA-CCGTTCACCCTAG
1 GTAGAGCCGTTCACCCTAG
2498182 GTAGAGCCGTTCACCCTAG
1 GTAGAGCCGTTCACCCTAG
2498201 GTAGAGCC
1 GTAGAGCC
2498209 ATTCCGATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (19 bp):
GTAGAGCCGTTCACCCTAG
Found at i:2504565 original size:17 final size:17
Alignment explanation
Indices: 2504545--2504584 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
2504535 GATTAATAAG
2504545 ATAA-AATAAAACAAATA
1 ATAATAATAAAA-AAATA
*
2504562 ATAATAATAAAATAATA
1 ATAATAATAAAAAAATA
2504579 ATAATA
1 ATAATA
2504585 TATTATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (17 bp):
ATAATAATAAAAAAATA
Found at i:2504574 original size:14 final size:14
Alignment explanation
Indices: 2504538--2504584 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
2504528 AAAAAAAGAT
*
2504538 TAATAAGATAA-AA
1 TAATAAAATAATAA
*
2504551 TAAAACAAATAATAA
1 TAATA-AAATAATAA
2504566 TAATAAAATAATAA
1 TAATAAAATAATAA
2504580 TAATA
1 TAATA
2504585 TATTATATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 4 0.14
14 19 0.66
15 6 0.21
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (14 bp):
TAATAAAATAATAA
Found at i:2504698 original size:35 final size:35
Alignment explanation
Indices: 2504588--2504937 Score: 318
Period size: 37 Copynumber: 9.7 Consensus size: 35
2504578 AATAATATAT
* *
2504588 TATATATTATATA---TAAAAAATATTTCCAGAAAC
1 TATATATTATATATTTTAAAAAATGTTTTCA-AAAC
* *
2504621 TATATAATTTATATATTTTCAAAAATATTTT-AAAAC
1 TATAT-A-TTATATATTTTAAAAAATGTTTTCAAAAC
2504657 TATATATTATATATTTTAAAAAATGTTTTCAAAAC
1 TATATATTATATATTTTAAAAAATGTTTTCAAAAC
**
2504692 TATATATTATATAGTTTTTGAAAATGTTTT-AAAAC
1 TATATATTATATA-TTTTAAAAAATGTTTTCAAAAC
* *
2504727 TATATATTTTATATGTTTTCAAAAAATGATTTCAAAAC
1 TATATA--TTATATATTTT-AAAAAATGTTTTCAAAAC
** * *
2504765 TATATATTATATGAGTTTTTTAAAATGATTTAAAAAC
1 TATATATTATAT-A-TTTTAAAAAATGTTTTCAAAAC
* *
2504802 TATATAATATATAAGTTTT-TAAAATGTTTTCAAAAAC
1 TATATATTATAT-A-TTTTAAAAAATGTTTTC-AAAAC
**
2504839 TATATATTATATATATTTTCAAAATGTTTTCAAAAAC
1 TATATATTATATAT-TTTAAAAAATGTTTTC-AAAAC
*
2504876 TATATATTATATACATTTT-CAAAATGTTTTCGAAAAC
1 TATATATTATAT--ATTTTAAAAAATGTTTTC-AAAAC
*
2504913 TATATAATATATAAATTTTAAAAAA
1 TATAT-AT-TATATATTTTAAAAAA
2504938 ACATTTTCTA
Statistics
Matches: 273, Mismatches: 23, Indels: 37
0.82 0.07 0.11
Matches are distributed among these distances:
33 5 0.02
34 22 0.08
35 38 0.14
36 47 0.17
37 120 0.44
38 35 0.13
39 6 0.02
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.44
Consensus pattern (35 bp):
TATATATTATATATTTTAAAAAATGTTTTCAAAAC
Found at i:2504881 original size:74 final size:71
Alignment explanation
Indices: 2504582--2504936 Score: 362
Period size: 74 Copynumber: 4.8 Consensus size: 71
2504572 AATAATAATA
* * *
2504582 ATATATTATATATTATATATAAAAAATATTTCCAGAAACTATATAATT-TATATATTTTCAAAAA
1 ATATATTATATA--AT-TTTAAAAAATGTTTTCA-AAACTATAT-ATTATATATATTTTC-AAAA
*
2504646 TATTTTAAAACT
60 TGTTTTAAAACT
*
2504658 ATATATTATAT-ATTTTAAAAAATGTTTTCAAAACTATATATTATATAGT-TTTTGAAAATGTTT
1 ATATATTATATAATTTTAAAAAATGTTTTCAAAACTATATATTATATA-TATTTTCAAAATGTTT
2504721 TAAAACT
65 TAAAACT
* * * *
2504728 ATATATTTTATATGTTTTCAAAAAATGATTTCAAAACTATATATTATATGAGT-TTTTTAAAATG
1 ATATATTATATA-ATTTT-AAAAAATGTTTTCAAAACTATATATTATAT-A-TATTTTCAAAATG
*
2504792 ATTTAAAAACT
62 -TTTTAAAACT
* *
2504803 ATATAATATATAAGTTTT-TAAAATGTTTTCAAAAACTATATATTATATATATTTTCAAAATGTT
1 ATATATTATATAA-TTTTAAAAAATGTTTTC-AAAACTATATATTATATATATTTTCAAAATGTT
2504867 TTCAAAAACT
64 TT--AAAACT
* * * *
2504877 ATATATTATATACATTTT-CAAAATGTTTTCGAAAACTATATAATATATAAATTTTAAAAA
1 ATATATTATATA-ATTTTAAAAAATGTTTTC-AAAACTATATATTATATATATTTTCAAAA
2504937 AACATTTTCT
Statistics
Matches: 243, Mismatches: 23, Indels: 28
0.83 0.08 0.10
Matches are distributed among these distances:
70 28 0.12
71 17 0.07
72 23 0.09
73 52 0.21
74 88 0.36
75 24 0.10
76 11 0.05
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (71 bp):
ATATATTATATAATTTTAAAAAATGTTTTCAAAACTATATATTATATATATTTTCAAAATGTTTT
AAAACT
Found at i:2505336 original size:29 final size:29
Alignment explanation
Indices: 2505265--2505337 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 29
2505255 TGCACGTCGG
* * *
2505265 GATAGGTCGCCATGCACGTCCAGCGACCT
1 GATAGGTCGCCATGCAAGCCCAGCGACAT
*
2505294 G-TAGGTCGCCATGCAAGCCCCGCGACAT
1 GATAGGTCGCCATGCAAGCCCAGCGACAT
*
2505322 GATAGGTCACCATGCA
1 GATAGGTCGCCATGCA
2505338 GTCCCAACGA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 24 0.63
29 14 0.37
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.16
Consensus pattern (29 bp):
GATAGGTCGCCATGCAAGCCCAGCGACAT
Found at i:2505348 original size:29 final size:29
Alignment explanation
Indices: 2505265--2505348 Score: 93
Period size: 28 Copynumber: 2.9 Consensus size: 29
2505255 TGCACGTCGG
*
2505265 GATAGGTCGCCATGCACGT-CCAGCGACCT
1 GATAGGTCGCCATGCA-GTCCCAGCGACAT
*
2505294 G-TAGGTCGCCATGCAAG-CCCCGCGACAT
1 GATAGGTCGCCATGC-AGTCCCAGCGACAT
* *
2505322 GATAGGTCACCATGCAGTCCCAACGAC
1 GATAGGTCGCCATGCAGTCCCAGCGAC
2505349 CAACGTTTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
28 25 0.54
29 21 0.46
ACGTcount: A:0.24, C:0.35, G:0.26, T:0.15
Consensus pattern (29 bp):
GATAGGTCGCCATGCAGTCCCAGCGACAT
Found at i:2505637 original size:19 final size:19
Alignment explanation
Indices: 2505595--2505639 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
2505585 AAGCACAAGA
*
2505595 AAGAAAGAAAGGGAGAAGT
1 AAGAAAGAAAGGAAGAAGT
*
2505614 GAGAAATGAAAGGAAGAAG-
1 AAGAAA-GAAAGGAAGAAGT
2505633 AAGAAAG
1 AAGAAAG
2505640 GGAGAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 1 0.05
19 10 0.45
20 11 0.50
ACGTcount: A:0.60, C:0.00, G:0.36, T:0.04
Consensus pattern (19 bp):
AAGAAAGAAAGGAAGAAGT
Found at i:2506116 original size:9 final size:9
Alignment explanation
Indices: 2506094--2506132 Score: 60
Period size: 9 Copynumber: 4.2 Consensus size: 9
2506084 GAAGAAAGAA
*
2506094 AAAAGAAAG
1 AAAAGGAAG
2506103 AAAAAGGAAG
1 -AAAAGGAAG
2506113 AAAAGGAAG
1 AAAAGGAAG
2506122 AAAAGGAAG
1 AAAAGGAAG
2506131 AA
1 AA
2506133 GGCATAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (9 bp):
AAAAGGAAG
Found at i:2506265 original size:17 final size:17
Alignment explanation
Indices: 2506243--2506301 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
2506233 ATTTATTCCC
2506243 GTTTAAAAAAATATTTT
1 GTTTAAAAAAATATTTT
*
2506260 GTTTAAAAATATTTATTGTT
1 GTTTAAAAA-A-ATATT-TT
2506280 GTTT-AAAAAATATTTT
1 GTTTAAAAAAATATTTT
2506296 GTTTAA
1 GTTTAA
2506302 TTTATATTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
16 6 0.17
17 14 0.39
18 2 0.06
19 8 0.22
20 6 0.17
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (17 bp):
GTTTAAAAAAATATTTT
Found at i:2506283 original size:20 final size:20
Alignment explanation
Indices: 2506243--2506294 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
2506233 ATTTATTCCC
2506243 GTTTAAAAAA-A--TATTTT
1 GTTTAAAAAATATTTATTTT
2506260 GTTT-AAAAATATTTATTGTT
1 GTTTAAAAAATATTTATT-TT
2506280 GTTTAAAAAATATTT
1 GTTTAAAAAATATTT
2506295 TGTTTAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.17
17 5 0.17
19 4 0.13
20 6 0.20
21 10 0.33
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (20 bp):
GTTTAAAAAATATTTATTTT
Found at i:2506510 original size:65 final size:64
Alignment explanation
Indices: 2506432--2506577 Score: 183
Period size: 65 Copynumber: 2.3 Consensus size: 64
2506422 ACTAATCATT
* * *
2506432 ATTATTAGTAATCATTACTAAATGATT-AGTATCAAATTCAAATA-ATTA-AATATTTATAATAA
1 ATTATTAGTAATCATTACTAAATCATTAAATATCAAA-TC-AATAGATTAGAATAATTAT--TAA
2506494 ATA
62 ATA
*
2506497 ATTATTAGTAATCATTACTAAATCATTAAATATCAAATCATTAGATTAGTAATAATTATTAAATA
1 ATTATTAGTAATCATTACTAAATCATTAAATATCAAATCAATAGATTAG-AATAATTATTAAATA
2506562 ATTATTAGTAAT-ATTA
1 ATTATTAGTAATCATTA
2506578 GTAATCAATC
Statistics
Matches: 73, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
64 7 0.10
65 50 0.68
66 8 0.11
67 8 0.11
ACGTcount: A:0.48, C:0.06, G:0.05, T:0.41
Consensus pattern (64 bp):
ATTATTAGTAATCATTACTAAATCATTAAATATCAAATCAATAGATTAGAATAATTATTAAATA
Found at i:2508390 original size:22 final size:23
Alignment explanation
Indices: 2508362--2508405 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
2508352 AACAGTTGAA
*
2508362 TTTATAACTA-GTCAAATTTATC
1 TTTATAAATATGTCAAATTTATC
*
2508384 TTTATAAATATGTCGAATTTAT
1 TTTATAAATATGTCAAATTTAT
2508406 TTTTTTACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (23 bp):
TTTATAAATATGTCAAATTTATC
Found at i:2508453 original size:15 final size:17
Alignment explanation
Indices: 2508433--2508469 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
2508423 AGAGACATGC
2508433 ATATTTAA-TATT-ATA
1 ATATTTAAGTATTAATA
*
2508448 ATATTTAAGTTTTAATA
1 ATATTTAAGTATTAATA
2508465 ATATT
1 ATATT
2508470 AAACATATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 3 0.16
17 8 0.42
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
ATATTTAAGTATTAATA
Found at i:2517849 original size:21 final size:22
Alignment explanation
Indices: 2517825--2517865 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
2517815 GACTATTTTT
2517825 ATTTTTCA-ATTTT-AAAATATC
1 ATTTTT-ATATTTTGAAAATATC
2517846 ATTTTTATATTTTGAAAATA
1 ATTTTTATATTTTGAAAATA
2517866 AAGTCTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 11 0.61
22 6 0.33
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (22 bp):
ATTTTTATATTTTGAAAATATC
Found at i:2519926 original size:19 final size:21
Alignment explanation
Indices: 2519902--2519953 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
2519892 CGGCCAAGAG
*
2519902 CATGTATCTTCA-TT-AAAAT
1 CATGTATTTTCATTTAAAAAT
2519921 CATGTATTTTCATTTAAAAAT
1 CATGTATTTTCATTTAAAAAT
2519942 CATGTATTTTCA
1 CATGTATTTTCA
2519954 AAGGGGTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 2 0.07
21 17 0.57
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAAT
Found at i:2520332 original size:35 final size:35
Alignment explanation
Indices: 2520292--2520380 Score: 112
Period size: 35 Copynumber: 2.6 Consensus size: 35
2520282 ACTATATGTC
*
2520292 CATCACCATCTTCCATTACCATTTCACGCCTATA-A
1 CATCACCATCTTCCATTACCA-TTCACACCTATATA
* *
2520327 CATCACCATCTTCTATCACCATTCACACCTATATA
1 CATCACCATCTTCCATTACCATTCACACCTATATA
*
2520362 -ATCACCAT-TTCCCTTACCA
1 CATCACCATCTTCCATTACCA
2520381 CCTATTCACC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
33 8 0.17
34 19 0.40
35 20 0.43
ACGTcount: A:0.29, C:0.38, G:0.01, T:0.31
Consensus pattern (35 bp):
CATCACCATCTTCCATTACCATTCACACCTATATA
Found at i:2520775 original size:20 final size:20
Alignment explanation
Indices: 2520739--2520781 Score: 56
Period size: 17 Copynumber: 2.3 Consensus size: 20
2520729 GTGTTGTAAT
*
2520739 AAAAAGCAACAAGAAAGAAG
1 AAAAAGCAAAAAGAAAGAAG
2520759 AAAAA-CAAAAAG-AA-AAG
1 AAAAAGCAAAAAGAAAGAAG
2520776 AAAAAG
1 AAAAAG
2520782 ACTCCTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 8 0.38
18 2 0.10
19 6 0.29
20 5 0.24
ACGTcount: A:0.77, C:0.07, G:0.16, T:0.00
Consensus pattern (20 bp):
AAAAAGCAAAAAGAAAGAAG
Found at i:2523648 original size:15 final size:16
Alignment explanation
Indices: 2523628--2523664 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
2523618 GATTAGATTA
2523628 AAATAAACAAAAGAT-
1 AAATAAACAAAAGATG
*
2523643 AAATAAACAGAAGATG
1 AAATAAACAAAAGATG
2523659 AAATAA
1 AAATAA
2523665 GATAATAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.70, C:0.05, G:0.11, T:0.14
Consensus pattern (16 bp):
AAATAAACAAAAGATG
Found at i:2529899 original size:11 final size:11
Alignment explanation
Indices: 2529885--2529936 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
2529875 TAATTTTGGC
2529885 TTTTTTGTTTT
1 TTTTTTGTTTT
2529896 TTTTTTGTTTTCT
1 TTTTTTG-TTT-T
**
2529909 TTTTTTGCCTT
1 TTTTTTGTTTT
2529920 TTTTTTGTTTT
1 TTTTTTGTTTT
2529931 TTTTTT
1 TTTTTT
2529937 TGAAAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
11 23 0.66
12 4 0.11
13 8 0.23
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.87
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:2529912 original size:24 final size:23
Alignment explanation
Indices: 2529885--2529938 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
2529875 TAATTTTGGC
**
2529885 TTTTTTGTTTTTTTTTTGTTTTCT
1 TTTTTTGCCTTTTTTTTGTTTT-T
2529909 TTTTTTGCCTTTTTTTTGTTTTT
1 TTTTTTGCCTTTTTTTTGTTTTT
2529932 TTTTTTG
1 TTTTTTG
2529939 AAAAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 8 0.29
24 20 0.71
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (23 bp):
TTTTTTGCCTTTTTTTTGTTTTT
Found at i:2531721 original size:21 final size:19
Alignment explanation
Indices: 2531681--2531729 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 19
2531671 CGACCAAGAG
*
2531681 CATGTATCTTCATTAAAAT
1 CATGTATTTTCATTAAAAT
2531700 CATGTATTTTCATTTAAAAAT
1 CATGTATTTTCA-TT-AAAAT
2531721 CATGTATTT
1 CATGTATTT
2531730 CAAAGGGGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 11 0.41
20 2 0.07
21 14 0.52
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (19 bp):
CATGTATTTTCATTAAAAT
Found at i:2532144 original size:34 final size:35
Alignment explanation
Indices: 2532070--2532152 Score: 93
Period size: 35 Copynumber: 2.5 Consensus size: 35
2532060 ACTATATGTC
* * *
2532070 CATCACCATCTTCCATTACCATTTCACGCCTATAA
1 CATCACCATCTTCCATCAACATTTCACACCTATAA
*
2532105 CATCACCATCTTCTATCAACA-TTCACACCTATATA
1 CATCACCATCTTCCATCAACATTTCACACCTATA-A
2532140 -ATCA-CAT-TTCCAT
1 CATCACCATCTTCCAT
2532153 AACCACCTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
32 5 0.12
33 3 0.07
34 15 0.36
35 19 0.45
ACGTcount: A:0.31, C:0.35, G:0.01, T:0.33
Consensus pattern (35 bp):
CATCACCATCTTCCATCAACATTTCACACCTATAA
Found at i:2533207 original size:27 final size:27
Alignment explanation
Indices: 2533157--2533216 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
2533147 AGATATGATC
* *
2533157 AAAATACCCTCAAGATTTAGAATGACT
1 AAAATACCCTCAAGATCTAAAATGACT
*
2533184 AAAATACCCTCAA-ACTCTAAAATGATT
1 AAAATACCCTCAAGA-TCTAAAATGACT
2533211 AAAATA
1 AAAATA
2533217 ATCTCGAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.50, C:0.18, G:0.07, T:0.25
Consensus pattern (27 bp):
AAAATACCCTCAAGATCTAAAATGACT
Found at i:2534182 original size:27 final size:26
Alignment explanation
Indices: 2534133--2534204 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
2534123 TTCATTGGAT
* *
2534133 ATGACAAAAATACCTCGAGCTCT-AG
1 ATGACTAAAATACCTCGAACTCTGAG
*
2534158 AATGACTAAAATACCCTTGAACTCTGAG
1 -ATGACTAAAATA-CCTCGAACTCTGAG
*
2534186 ATGATTAAAATAACCTCGA
1 ATGACTAAAAT-ACCTCGA
2534205 GTACTGAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
26 11 0.29
27 24 0.63
28 3 0.08
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.24
Consensus pattern (26 bp):
ATGACTAAAATACCTCGAACTCTGAG
Found at i:2534395 original size:11 final size:11
Alignment explanation
Indices: 2534379--2534411 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
2534369 TAAACACTAG
2534379 ATTTTAAATTA
1 ATTTTAAATTA
*
2534390 ATTTTAAGTTA
1 ATTTTAAATTA
2534401 ATTTTAAATTA
1 ATTTTAAATTA
2534412 CTTCATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (11 bp):
ATTTTAAATTA
Found at i:2534573 original size:38 final size:39
Alignment explanation
Indices: 2534510--2534612 Score: 129
Period size: 38 Copynumber: 2.7 Consensus size: 39
2534500 TCCCAAATCA
2534510 TATCTTCTGTATCATCCAACCCTAAAAACCT-TCAGATCC
1 TATCTTCTGTATCATCCAACCCTAAAAACCTCTC-GATCC
* *
2534549 TATCTTTTGTATC-TCCAACCCTAAACACCTCTCGATCC
1 TATCTTCTGTATCATCCAACCCTAAAAACCTCTCGATCC
** * *
2534587 CGTCTTCTGTATCATCGAACTCTAAA
1 TATCTTCTGTATCATCCAACCCTAAA
2534613 CTTTAATGGT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
38 31 0.56
39 24 0.44
ACGTcount: A:0.27, C:0.33, G:0.07, T:0.33
Consensus pattern (39 bp):
TATCTTCTGTATCATCCAACCCTAAAAACCTCTCGATCC
Found at i:2561761 original size:17 final size:17
Alignment explanation
Indices: 2561739--2561819 Score: 64
Period size: 17 Copynumber: 5.0 Consensus size: 17
2561729 AGATTGTTTA
2561739 ATATATTTAATATTTTT
1 ATATATTTAATATTTTT
*
2561756 ATATA-TTAATAGTTTTA
1 ATATATTTAATA-TTTTT
* * *
2561773 ATATTTTTAA-A-ATTC
1 ATATATTTAATATTTTT
* *
2561788 A-AT-TATAATATTCTT
1 ATATATTTAATATTTTT
2561803 ATATATTTAATATTTTT
1 ATATATTTAATATTTTT
2561820 TATTTTTTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
13 4 0.08
14 3 0.06
15 5 0.10
16 8 0.17
17 24 0.50
18 4 0.08
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.58
Consensus pattern (17 bp):
ATATATTTAATATTTTT
Found at i:2561765 original size:25 final size:25
Alignment explanation
Indices: 2561736--2561829 Score: 83
Period size: 25 Copynumber: 3.9 Consensus size: 25
2561726 TTTAGATTGT
2561736 TTAATATATTTAATATTTTTATATA
1 TTAATATATTTAATATTTTTATATA
*
2561761 TTAATAGT-TTTAATATTTTTA-AAA
1 TTAATA-TATTTAATATTTTTATATA
*
2561785 TTCAAT-TA--TAATATTCTTATATA
1 TT-AATATATTTAATATTTTTATATA
* *
2561808 TTTAATATTTTTTAT-TTTTTAT
1 -TTAATATATTTAATATTTTTAT
2561830 TTTTCAATTA
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
22 10 0.18
23 6 0.11
24 7 0.13
25 28 0.51
26 4 0.07
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (25 bp):
TTAATATATTTAATATTTTTATATA
Found at i:2562258 original size:13 final size:12
Alignment explanation
Indices: 2562236--2562520 Score: 75
Period size: 12 Copynumber: 23.0 Consensus size: 12
2562226 TAATATATAG
2562236 TTTTGAAAATAT
1 TTTTGAAAATAT
2562248 TTTTCGAAAATAT
1 TTTT-GAAAATAT
* * *
2562261 ATAT-AATATATAG
1 TTTTGAA-A-ATAT
*
2562274 TTTTGAAAACAT
1 TTTTGAAAATAT
2562286 TTTTGAAAATAT
1 TTTTGAAAATAT
* * *
2562298 ATAT-AATATATAG
1 TTTTGAA-A-ATAT
2562311 TTTTGAAAATAT
1 TTTTGAAAATAT
*
2562323 TTTCGAAAATAT
1 TTTTGAAAATAT
* * *
2562335 ATAT-AATATATAG
1 TTTTGAA-A-ATAT
*
2562348 TTTTGAAAACATTT
1 TTTTG-AAA-ATAT
2562362 TTTTGAAAATA-
1 TTTTGAAAATAT
* *
2562373 -TAT-AATATATAG
1 TTTTGAA-A-ATAT
*
2562385 TTTTGAAAACAT
1 TTTTGAAAATAT
*
2562397 TTTTGAATATAT
1 TTTTGAAAATAT
* * *
2562409 ATAT-AATATATAG
1 TTTTGAA-A-ATAT
* *
2562422 ATTTGAAAACATT
1 TTTTGAAAATA-T
*
2562435 TTTTGAAAGTAT
1 TTTTGAAAATAT
* * *
2562447 ATAT-AATATATAG
1 TTTTGAA-A-ATAT
*
2562460 TTTTGAAAACAT
1 TTTTGAAAATAT
*
2562472 TTTCGAAAATAT
1 TTTTGAAAATAT
* * *
2562484 ATAT-AATATATAG
1 TTTTGAA-A-ATAT
2562497 TTTTGAAAATAT
1 TTTTGAAAATAT
2562509 TTTTGAAAATAT
1 TTTTGAAAATAT
2562521 ATAATATATA
Statistics
Matches: 189, Mismatches: 58, Indels: 52
0.63 0.19 0.17
Matches are distributed among these distances:
9 2 0.01
10 3 0.02
11 15 0.08
12 88 0.47
13 59 0.31
14 20 0.11
15 2 0.01
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (12 bp):
TTTTGAAAATAT
Found at i:2562303 original size:37 final size:37
Alignment explanation
Indices: 2562178--2562552 Score: 569
Period size: 37 Copynumber: 10.0 Consensus size: 37
2562168 TTTATTTAAT
*
2562178 ATATAATATACATCATATAGTTTTGAAAACATTTTTCTAAA
1 ATAT-ATATA-AT-ATATAGTTTTGAAAACATTTTT-GAAA
*
2562219 ATATATATAATATATAGTTTTGAAAATATTTTTCGAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTT-GAAA
2562257 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
* *
2562294 ATATATATAATATATAGTTTTGAAAATATTTTCGAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
2562331 ATATATATAATATATAGTTTTGAAAACATTTTTTTG-AA
1 ATATATATAATATATAGTTTTGAAAACA--TTTTTGAAA
*
2562369 A-ATATATAATATATAGTTTTGAAAACATTTTTGAAT
1 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
*
2562405 ATATATATAATATATAGATTTGAAAACATTTTTTGAAA
1 ATATATATAATATATAGTTTTGAAAACA-TTTTTGAAA
* *
2562443 GTATATATAATATATAGTTTTGAAAACATTTTCGAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
*
2562480 ATATATATAATATATAGTTTTGAAAATATTTTTG-AA
1 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
2562516 A-ATATATAATATATAGTTTTGAAAACATTTTTGAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
2562552 A
1 A
2562553 CATAGTTTTC
Statistics
Matches: 311, Mismatches: 17, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
35 37 0.12
36 8 0.03
37 156 0.50
38 94 0.30
39 7 0.02
40 5 0.02
41 4 0.01
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.43
Consensus pattern (37 bp):
ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
Found at i:2562347 original size:112 final size:113
Alignment explanation
Indices: 2562178--2562552 Score: 584
Period size: 112 Copynumber: 3.3 Consensus size: 113
2562168 TTTATTTAAT
*
2562178 ATATAATATACATCATATAGTTTTGAAAACATTTTTCTAAAATATATATAATATATAGTTTTGAA
1 ATAT-ATATA-AT-ATATAGTTTTGAAAACATTTTTCGAAAATATATATAATATATAGTTTTGAA
*
2562243 AATATTTTTCGAAAATATATATAATATATAGTTTTGAAAACATTTTTGAAA
63 AACATTTTTCGAAAATATATATAATATATAGTTTTGAAAACATTTTTGAAA
*
2562294 ATATATATAATATATAGTTTTGAAAATA-TTTTCGAAAATATATATAATATATAGTTTTGAAAAC
1 ATATATATAATATATAGTTTTGAAAACATTTTTCGAAAATATATATAATATATAGTTTTGAAAAC
* *
2562358 ATTTTTTTG-AAA-ATATATAATATATAGTTTTGAAAACATTTTTGAAT
66 A-TTTTTCGAAAATATATATAATATATAGTTTTGAAAACATTTTTGAAA
* * *
2562405 ATATATATAATATATAGATTTGAAAACATTTTTTGAAAGTATATATAATATATAGTTTTGAAAAC
1 ATATATATAATATATAGTTTTGAAAACATTTTTCGAAAATATATATAATATATAGTTTTGAAAAC
*
2562470 A-TTTTCGAAAATATATATAATATATAGTTTTGAAAATATTTTTG-AA
66 ATTTTTCGAAAATATATATAATATATAGTTTTGAAAACATTTTTGAAA
2562516 A-ATATATAATATATAGTTTTGAAAACATTTTT-GAAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTTCGAAAA
2562553 CATAGTTTTC
Statistics
Matches: 241, Mismatches: 14, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
109 4 0.02
110 35 0.15
111 65 0.27
112 104 0.43
113 22 0.09
114 2 0.01
115 5 0.02
116 4 0.02
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.43
Consensus pattern (113 bp):
ATATATATAATATATAGTTTTGAAAACATTTTTCGAAAATATATATAATATATAGTTTTGAAAAC
ATTTTTCGAAAATATATATAATATATAGTTTTGAAAACATTTTTGAAA
Found at i:2562549 original size:12 final size:12
Alignment explanation
Indices: 2562532--2562577 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
2562522 TAATATATAG
2562532 TTTTGAAAACAT
1 TTTTGAAAACAT
2562544 TTTTGAAAACAT
1 TTTTGAAAACAT
2562556 AGTTTTCG-AAACA-
1 --TTTT-GAAAACAT
2562569 TTTTGAAAA
1 TTTTGAAAA
2562578 ATATATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
10 1 0.03
11 7 0.23
12 12 0.40
14 9 0.30
15 1 0.03
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (12 bp):
TTTTGAAAACAT
Found at i:2562631 original size:37 final size:35
Alignment explanation
Indices: 2562554--2562694 Score: 148
Period size: 35 Copynumber: 4.1 Consensus size: 35
2562544 TTTTGAAAAC
2562554 ATAGTTTTCG-AAACATTTTGAAA-A-ATATA-TAT
1 ATAGTTTT-GAAAACATTTTGAAATATATATATTAT
*
2562586 ATAGTTTTGAAAACGTTTTGGAAAATATATATATTAT
1 ATAGTTTTGAAAACATTTT-G-AAATATATATATTAT
* * *
2562623 ATAATTTTGAAAATATTTTTG-AATATATATAATAT
1 ATAGTTTTGAAAACA-TTTTGAAATATATATATTAT
* * *
2562658 ATGGTTTTGAAAACATTTTCAAATATATATATAAT
1 ATAGTTTTGAAAACATTTTGAAATATATATATTAT
2562693 AT
1 AT
2562695 TTTTTTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
31 1 0.01
32 16 0.18
33 1 0.01
34 7 0.08
35 40 0.44
36 5 0.06
37 16 0.18
38 4 0.04
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (35 bp):
ATAGTTTTGAAAACATTTTGAAATATATATATTAT
Found at i:2564133 original size:16 final size:15
Alignment explanation
Indices: 2564114--2564150 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
2564104 GCTTTTTGTA
2564114 TTTTTTCTA-TTTAAC
1 TTTTTT-TACTTTAAC
2564129 TTTTTTTACTTTAAC
1 TTTTTTTACTTTAAC
2564144 TTTTTTT
1 TTTTTTT
2564151 GTTTTTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTTTACTTTAAC
Found at i:2566112 original size:17 final size:17
Alignment explanation
Indices: 2566090--2566123 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2566080 ATTGCTTTGT
2566090 GCCTTCGAAGCTTCTTC
1 GCCTTCGAAGCTTCTTC
2566107 GCCTTCGAAGCTTCTTC
1 GCCTTCGAAGCTTCTTC
2566124 TCCTGGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.18, T:0.35
Consensus pattern (17 bp):
GCCTTCGAAGCTTCTTC
Found at i:2566384 original size:20 final size:20
Alignment explanation
Indices: 2566352--2566390 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
2566342 TCTTTAGCAT
2566352 TTTATTTTATTTTCAATTTC
1 TTTATTTTATTTTCAATTTC
*
2566372 TTTATCTTT-TTTTTAATTT
1 TTTAT-TTTATTTTCAATTT
2566391 GTTCTAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTATTTTATTTTCAATTTC
Found at i:2568683 original size:2 final size:2
Alignment explanation
Indices: 2568676--2568703 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2568666 GAACATGTTG
2568676 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2568704 TGGATAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2571407 original size:25 final size:25
Alignment explanation
Indices: 2571379--2571437 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
2571369 AAATATGTAG
2571379 ATCTAAATATTGTATAAGTTAAAGA
1 ATCTAAATATTGTATAAGTTAAAGA
2571404 ATCTAAATATTGTATAAGTTAAAGA
1 ATCTAAATATTGTATAAGTTAAAGA
2571429 ATCTAAATA
1 ATCTAAATA
2571438 AAATAAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (25 bp):
ATCTAAATATTGTATAAGTTAAAGA
Found at i:2572899 original size:36 final size:36
Alignment explanation
Indices: 2572858--2572933 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
2572848 ATTTTCGGGA
*
2572858 TTTTGCTATTTTTGGCAAAATTCGAATAAATACGAT
1 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
2572894 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
1 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
2572930 TTTT
1 TTTT
2572934 TTAGCTATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (36 bp):
TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
Found at i:2573308 original size:3 final size:3
Alignment explanation
Indices: 2573296--2573547 Score: 82
Period size: 3 Copynumber: 80.7 Consensus size: 3
2573286 TGCCATTAAC
* *
2573296 AAT AAT -AT AAT AA- AATT AAT AAT AAT -AT AAT AACT AAT GAC AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AA-T AAT AAT AAT
* * * *
2573340 AAT AAT AAT ACGT AGT AAT AAT ATAT AAT AAAT ATT AAT AATT AGT AAT
1 AAT AAT AAT A-AT AAT AAT AAT A-AT AAT -AAT AAT AAT AA-T AAT AAT
* * * * * *
2573389 AAT AAT AACT ACT ACT ACCT ATT AAT ATAT AAT ACT AAT AAC ATAT AAT
1 AAT AAT AA-T AAT AAT A-AT AAT AAT A-AT AAT AAT AAT AAT A-AT AAT
* * * ** * * **
2573438 AA- ATAC AAT AAT -AT AAA AAG AAT AAT GCT AAT ACT AAAT GAT GGT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* * * * * * *
2573483 AAGT AAC AGT ATT AAT AAT TAT AGT AAT ATAT AAC AAT AAT GAT AAT
1 AA-T AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
2573530 AAT AAT ATAT AAT AAT AA
1 AAT AAT A-AT AAT AAT AA
2573548 CATATGAAAC
Statistics
Matches: 185, Mismatches: 44, Indels: 40
0.69 0.16 0.15
Matches are distributed among these distances:
2 9 0.05
3 139 0.75
4 37 0.20
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:2573319 original size:20 final size:20
Alignment explanation
Indices: 2573290--2573381 Score: 71
Period size: 20 Copynumber: 4.5 Consensus size: 20
2573280 TACCCATGCC
*
2573290 ATTAACAATAATATAATAAA
1 ATTAATAATAATATAATAAA
2573310 ATTAATAATAATATAATAACTA
1 ATTAATAATAATATAATAA--A
* * **
2573332 A-TGACAATAATAATAATACGT
1 ATTAATAATAAT-ATAATA-AA
*
2573353 AGTAATAAT-ATATAATAAA
1 ATTAATAATAATATAATAAA
2573372 TATTAATAAT
1 -ATTAATAAT
2573382 TAGTAATAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
20 32 0.57
21 11 0.20
22 13 0.23
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (20 bp):
ATTAATAATAATATAATAAA
Found at i:2573333 original size:12 final size:11
Alignment explanation
Indices: 2573296--2573546 Score: 74
Period size: 13 Copynumber: 21.6 Consensus size: 11
2573286 TGCCATTAAC
2573296 AATAATATAAT
1 AATAATATAAT
2573307 AA-AAT-TAAT
1 AATAATATAAT
2573316 AATAATATAAT
1 AATAATATAAT
2573327 AACTAATGACAATAAT
1 AA-TAAT----ATAAT
*
2573343 AATAATACGTAGT
1 AATAATA--TAAT
2573356 AATAATAT-AT
1 AATAATATAAT
*
2573366 AATAA-ATATT
1 AATAATATAAT
2573376 AATAATTAGTAAT
1 AATAA-TA-TAAT
*
2573389 AATAATAACTACT
1 AATAAT-A-TAAT
* *
2573402 ACTACCTATTAAT
1 AATA-ATA-TAAT
2573415 ATATAATACTAAT
1 A-ATAATA-TAAT
*
2573428 AA-CATATAAT
1 AATAATATAAT
2573438 AAATACA-ATAAT
1 -AATA-ATATAAT
*
2573450 -ATAA-A-AAG
1 AATAATATAAT
*
2573458 AATAATGCTAAT
1 AATAAT-ATAAT
* **
2573470 ACTAAATGATGGT
1 AAT-AAT-ATAAT
* *
2573483 AAGTAACAGTATT
1 AA-TAATA-TAAT
*
2573496 AATAATTATAGT
1 AATAA-TATAAT
*
2573508 AAT-ATATAAC
1 AATAATATAAT
2573518 AATAATGATAAT
1 AATAAT-ATAAT
2573530 AATAATAT-AT
1 AATAATATAAT
2573540 AATAATA
1 AATAATA
2573547 ACATATGAAA
Statistics
Matches: 180, Mismatches: 31, Indels: 59
0.67 0.11 0.22
Matches are distributed among these distances:
8 2 0.01
9 14 0.08
10 41 0.23
11 20 0.11
12 36 0.20
13 52 0.29
14 4 0.02
15 4 0.02
16 7 0.04
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.33
Consensus pattern (11 bp):
AATAATATAAT
Found at i:2573379 original size:33 final size:31
Alignment explanation
Indices: 2573300--2573450 Score: 94
Period size: 33 Copynumber: 4.7 Consensus size: 31
2573290 ATTAACAATA
*
2573300 ATATAATAAA-ATTAATAATAATATAATAACT
1 ATATAATAAATATTAATAATAGTATAATAA-T
* * *
2573331 A-ATGA-CAATAATAATAATACGTAGTAATAAT
1 ATATAATAAATATTAATAATA-GTA-TAATAAT
2573362 ATATAATAAATATTAATAATTAGTAATAATAAT
1 ATATAATAAATATTAATAA-TAGT-ATAATAAT
* ** * *
2573395 AACTACTACTACCTATTAATATATAATACTAATAAC
1 -A-TA-TAATAAATATTAATA-ATAGTA-TAATAAT
*
2573431 ATATAATAAATA-CAATAATA
1 ATATAATAAATATTAATAATA
2573451 TAAAAAGAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
29 2 0.02
30 12 0.13
31 8 0.09
32 13 0.14
33 25 0.27
34 6 0.07
35 4 0.04
36 21 0.23
37 1 0.01
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (31 bp):
ATATAATAAATATTAATAATAGTATAATAAT
Found at i:2573386 original size:30 final size:29
Alignment explanation
Indices: 2573296--2573396 Score: 93
Period size: 30 Copynumber: 3.4 Consensus size: 29
2573286 TGCCATTAAC
*
2573296 AATAAT-ATAATAAA-ATTAATAA-TAAT
1 AATAATAATAATAAATATTAATAATTAGT
*
2573322 -ATAATAACTAATGACAATAATAATAATACGTAGT
1 AATAATAA-TAAT-A-AATATTAATAAT---TAGT
2573356 AATAATATATAATAAATATTAATAATTAGT
1 AATAATA-ATAATAAATATTAATAATTAGT
2573386 AATAATAATAA
1 AATAATAATAA
2573397 CTACTACTAC
Statistics
Matches: 61, Mismatches: 3, Indels: 19
0.73 0.04 0.23
Matches are distributed among these distances:
25 5 0.08
26 1 0.02
27 4 0.07
28 1 0.02
29 6 0.10
30 18 0.30
33 11 0.18
34 4 0.07
35 10 0.16
36 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (29 bp):
AATAATAATAATAAATATTAATAATTAGT
Found at i:2573523 original size:25 final size:25
Alignment explanation
Indices: 2573495--2573547 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
2573485 GTAACAGTAT
* *
2573495 TAATAATTATAGTAATATATAACAA
1 TAATAATAATAATAATATATAACAA
* *
2573520 TAATGATAATAATAATATATAATAA
1 TAATAATAATAATAATATATAACAA
2573545 TAA
1 TAA
2573548 CATATGAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (25 bp):
TAATAATAATAATAATATATAACAA
Found at i:2573541 original size:13 final size:13
Alignment explanation
Indices: 2573507--2573552 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
2573497 ATAATTATAG
*
2573507 TAATATATAACAA
1 TAATATATAATAA
*
2573520 TAAT-GATAATAA
1 TAATATATAATAA
2573532 TAATATATAATAA
1 TAATATATAATAA
*
2573545 TAACATAT
1 TAATATAT
2573553 GAAACTAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 10 0.36
13 18 0.64
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (13 bp):
TAATATATAATAA
Found at i:2573801 original size:2 final size:2
Alignment explanation
Indices: 2573744--2573782 Score: 55
Period size: 2 Copynumber: 20.0 Consensus size: 2
2573734 TTTATTTTGT
2573744 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA -A TA TA GTA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
2573783 ATTTTTGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 2 0.06
2 30 0.88
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2573898 original size:17 final size:17
Alignment explanation
Indices: 2573876--2573918 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
2573866 AAACTTATAT
*
2573876 AATATATAGTTTT-TAAA
1 AATATATA-TTTTGAAAA
2573893 AATATATATTTTGAAAA
1 AATATATATTTTGAAAA
2573910 AATATATAT
1 AATATATAT
2573919 AATATATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (17 bp):
AATATATATTTTGAAAA
Found at i:2573904 original size:41 final size:39
Alignment explanation
Indices: 2573790--2574068 Score: 252
Period size: 39 Copynumber: 7.4 Consensus size: 39
2573780 ATAATTTTTG
* * * *
2573790 AAAATATATATAATGTGTAGTTTTTGAAAACATTCT-AA
1 AAAATATATATAATATATAGTTTTTAAAAACATTTTGAA
2573828 AAATATATATATAATATATAGTTTTT-AAAACATTTTG-A
1 AAA-ATATATATAATATATAGTTTTTAAAAACATTTTGAA
* *
2573866 AAACT-TATATAATATATAGTTTTTAAAAATATATATTTTGAA
1 AAAATATATATAATATATAGTTTTT--AAA-A-ACATTTTGAA
* *
2573908 AAAATATATATAATATATAATTTTTAAAAGCATTTTGAA
1 AAAATATATATAATATATAGTTTTTAAAAACATTTTGAA
2573947 AAAATATATATAATATATAGTTTTT-AAAACATTTTG--
1 AAAATATATATAATATATAGTTTTTAAAAACATTTTGAA
*
2573983 --AATATATATCATATATAGTTTTTTTTAAAAA-A--TTG--
1 AAAATATATATAATATATAG---TTTTTAAAAACATTTTGAA
*
2574018 -AAA-ATATATAATATATAG-TTTTGAAAACATTTT-AA
1 AAAATATATATAATATATAGTTTTTAAAAACATTTTGAA
2574053 AACAATAATATATAAT
1 AA-AAT-ATATATAAT
2574069 TTTTGAAAAT
Statistics
Matches: 204, Mismatches: 14, Indels: 45
0.78 0.05 0.17
Matches are distributed among these distances:
31 8 0.04
32 1 0.00
34 19 0.09
35 17 0.08
36 22 0.11
37 9 0.04
38 30 0.15
39 63 0.31
40 2 0.01
41 10 0.05
42 5 0.02
43 18 0.09
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (39 bp):
AAAATATATATAATATATAGTTTTTAAAAACATTTTGAA
Found at i:2573914 original size:118 final size:116
Alignment explanation
Indices: 2573790--2574005 Score: 328
Period size: 118 Copynumber: 1.8 Consensus size: 116
2573780 ATAATTTTTG
* * *
2573790 AAAATATATATAATGTGTAGTTTTTGAAAA-CATTCT-AAAAATATATATATAATATATAGTTTT
1 AAAATATATATAATATATAATTTTT-AAAAGCATTCTGAAAAA-ATATATATAATATATAGTTTT
2573853 TAAAACATTTTGAAAACTTATATAATATATAGTTTTTAAAAATATATATTTTGAA
64 TAAAACATTTTGAAAA--TATATAATATATAGTTTTTAAAAATATATATTTTGAA
*
2573908 AAAATATATATAATATATAATTTTTAAAAGCATTTTGAAAAAATATATATAATATATAGTTTTTA
1 AAAATATATATAATATATAATTTTTAAAAGCATTCTGAAAAAATATATATAATATATAGTTTTTA
* *
2573973 AAACATTTTGAATATATATCATATATAGTTTTT
66 AAACATTTTGAAAATATATAATATATAGTTTTT
2574006 TTTAAAAAAT
Statistics
Matches: 90, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
116 18 0.20
117 4 0.04
118 63 0.70
119 5 0.06
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (116 bp):
AAAATATATATAATATATAATTTTTAAAAGCATTCTGAAAAAATATATATAATATATAGTTTTTA
AAACATTTTGAAAATATATAATATATAGTTTTTAAAAATATATATTTTGAA
Found at i:2573988 original size:32 final size:31
Alignment explanation
Indices: 2573952--2574077 Score: 108
Period size: 32 Copynumber: 3.8 Consensus size: 31
2573942 TTGAAAAAAT
2573952 ATATATAATATATAGTTTTTAAAACATTTTGA
1 ATATATAATATATAGTTTTTAAAACATTTT-A
* **
2573984 ATATATATCATATATAGTTTTTTTTAAAAAATTGAAA
1 ATATATA--ATATATAG---TTTTTAAAACATT-TTA
*
2574021 ATATATAATATATAGTTTTGAAAACATTTTA
1 ATATATAATATATAGTTTTTAAAACATTTTA
* * *
2574052 AAACAATAATATATAATTTTTGAAAA
1 ATA-TATAATATATAGTTTTT-AAAA
2574078 TGTATATTAA
Statistics
Matches: 75, Mismatches: 11, Indels: 15
0.74 0.11 0.15
Matches are distributed among these distances:
31 3 0.04
32 32 0.43
33 4 0.05
34 8 0.11
35 8 0.11
37 20 0.27
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.44
Consensus pattern (31 bp):
ATATATAATATATAGTTTTTAAAACATTTTA
Found at i:2574019 original size:35 final size:37
Alignment explanation
Indices: 2573949--2574039 Score: 120
Period size: 35 Copynumber: 2.6 Consensus size: 37
2573939 ATTTTGAAAA
*
2573949 AATATATATAATATATAG---TTTTTAAAACATTTTG
1 AATATATATAATATATAGTTTTTTTTAAAACATATTG
*
2573983 AATATATATCATATATAGTTTTTTTTAAAA-A-ATTG
1 AATATATATAATATATAGTTTTTTTTAAAACATATTG
*
2574018 AAAATATATAATATATAGTTTT
1 AATATATATAATATATAGTTTT
2574040 GAAAACATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
34 17 0.34
35 23 0.46
36 1 0.02
37 9 0.18
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.47
Consensus pattern (37 bp):
AATATATATAATATATAGTTTTTTTTAAAACATATTG
Found at i:2574178 original size:37 final size:38
Alignment explanation
Indices: 2574103--2574194 Score: 107
Period size: 37 Copynumber: 2.4 Consensus size: 38
2574093 ATTTGAAAAT
* *
2574103 ATATATTAGTTTTAAAACAATTTTTTGAAAATATATATA
1 ATATA-TAGTTTTAAAACAATTTTTTGAAAACACATATA
* * *
2574142 TTATATGGTTTGAAAACAA-TTTTT-AAAAGCACATATA
1 ATATATAGTTTTAAAACAATTTTTTGAAAA-CACATATA
2574179 ATATATAGTTTTAAAA
1 ATATATAGTTTTAAAA
2574195 AAAATTTATT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
36 4 0.09
37 24 0.55
38 12 0.27
39 4 0.09
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.42
Consensus pattern (38 bp):
ATATATAGTTTTAAAACAATTTTTTGAAAACACATATA
Found at i:2574969 original size:9 final size:9
Alignment explanation
Indices: 2574955--2574983 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
2574945 ATTTAATATC
2574955 TTTTTTATT
1 TTTTTTATT
2574964 TTTTTTATT
1 TTTTTTATT
2574973 TTTTTTATT
1 TTTTTTATT
2574982 TT
1 TT
2574984 CCCCTTGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTATT
Found at i:2579532 original size:25 final size:25
Alignment explanation
Indices: 2579511--2579563 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
2579501 GTCAAAGTGT
2579511 TATAACTCTGAAATCATTAAAGAGC
1 TATAACTCTGAAATCATTAAAGAGC
2579536 TATAACTCTGAAATCATTAAAGAGC
1 TATAACTCTGAAATCATTAAAGAGC
2579561 TAT
1 TAT
2579564 TGATTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (25 bp):
TATAACTCTGAAATCATTAAAGAGC
Found at i:2580473 original size:85 final size:86
Alignment explanation
Indices: 2580229--2580507 Score: 416
Period size: 86 Copynumber: 3.3 Consensus size: 86
2580219 TCCTATGTGT
* * *
2580229 CTTTCCCATTAAGGGGAGTCATCCAAAGATCGTCTCACCTGGTTCAGACCCGCAAAGGGGAACCA
1 CTTTCCCATGAAGGGGAGTCATCCAAAGATCGTCTCACTTGGTTCAGACCCGCGAAGGGGAACCA
2580294 CATGAAGAATATACCACTTGG
66 CATGAAGAATATACCACTTGG
* * * *
2580315 CTTTCTCATAAAGGGGAGTCATCCAAAGATCGTCTCACTTGGTTCAGACCCACGAAGAGGAACCA
1 CTTTCCCATGAAGGGGAGTCATCCAAAGATCGTCTCACTTGGTTCAGACCCGCGAAGGGGAACCA
2580380 CATGAAGAATATACCACTTGG
66 CATGAAGAATATACCACTTGG
* * *
2580401 CTTTCCCGTGAAGGGG-GTCATCCAAAGATCGTCTCACTTGGTTCAGACCCGTGAAGGGGATCCA
1 CTTTCCCATGAAGGGGAGTCATCCAAAGATCGTCTCACTTGGTTCAGACCCGCGAAGGGGAACCA
* * *
2580465 CCTAAAGAATATAACACTTGG
66 CATGAAGAATATACCACTTGG
* *
2580486 CTTTCCCGTGAAGGGGATTCAT
1 CTTTCCCATGAAGGGGAGTCAT
2580508 TTAAAGAATT
Statistics
Matches: 175, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
85 78 0.45
86 97 0.55
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (86 bp):
CTTTCCCATGAAGGGGAGTCATCCAAAGATCGTCTCACTTGGTTCAGACCCGCGAAGGGGAACCA
CATGAAGAATATACCACTTGG
Found at i:2580501 original size:42 final size:41
Alignment explanation
Indices: 2580384--2580503 Score: 111
Period size: 43 Copynumber: 2.9 Consensus size: 41
2580374 GAACCACATG
* *
2580384 AAGAATATACCACTTGGCTTTCCCGTGAAGGGGGTCATCCA
1 AAGAATATAACACTTGGCTTTCCCGTGAAGGGGATCATCCA
* ** *
2580425 AAG-ATCGTCTCACTTGG-TTCAGACCCGTGAAGGGGATCCA-CCTA
1 AAGAAT-ATAACACTTGGCTT---TCCCGTGAAGGGGAT-CATCC-A
2580469 AAGAATATAACACTTGGCTTTCCCGTGAAGGGGAT
1 AAGAATATAACACTTGGCTTTCCCGTGAAGGGGAT
2580504 TCATTTAAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
40 4 0.06
41 11 0.18
42 14 0.23
43 15 0.24
44 14 0.23
45 4 0.06
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (41 bp):
AAGAATATAACACTTGGCTTTCCCGTGAAGGGGATCATCCA
Found at i:2580665 original size:16 final size:16
Alignment explanation
Indices: 2580641--2580671 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2580631 GCTCAAAGGC
*
2580641 ATATTAAATTTACAGA
1 ATATCAAATTTACAGA
2580657 ATATCAAATTTACAG
1 ATATCAAATTTACAG
2580672 CATTTCTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
ATATCAAATTTACAGA
Found at i:2581029 original size:168 final size:168
Alignment explanation
Indices: 2580657--2581097 Score: 561
Period size: 168 Copynumber: 2.6 Consensus size: 168
2580647 AATTTACAGA
** *
2580657 ATATCAAATTTACAGCATTTCTCAAGACAAGAAGGGTTATCTGTCAATCAAAACCTTCAAGTTTG
1 ATATCAAATTTACAGCATAACTCAAGACAAGAAGGGTTATCTGTCAAT-AAAACCTTCGAGTTTG
* *
2580722 ATTACATTCAGCTCAAGGACATATCAAA---ACAGCATAACTCAAGGCAAGAAGGGTTATCTATC
65 ATTACATTCAGCTCAAGG-CATATCAAATTTACAGCATAACTCAAGGCAAGAAGGGCTATCTACC
*
2580784 AACTAAAACCTTCGAGTTCAATTTCATTCAGCTCAAGGAC
129 AACTAAAACCTTCGAGTTCAATTACATTCAGCTCAAGGAC
*
2580824 ATATCAAATTTACAGCATAACTCAAGGA-AATAAGGGTTATCTGTCAATAAAGACCTTCGAGTTT
1 ATATCAAATTTACAGCATAACTCAA-GACAAGAAGGGTTATCTGTCAATAAA-ACCTTCGAGTTT
* * * * * *
2580888 GATTATAATCAGCTCAGATGCATATCAAATTTACAGCATAGCTCAAGGCAAGAAGGGCTATTTGC
64 GATTACATTCAGCTCA-AGGCATATCAAATTTACAGCATAACTCAAGGCAAGAAGGGCTATCTAC
* * *
2580953 CAA-T-AAACCTTCGAGTTCGATTACATTTAGCTCGAGGAC
128 CAACTAAAACCTTCGAGTTCAATTACATTCAGCTCAAGGAC
* * * * *
2580992 TTATCAAATTTACAGCATAACTCAAGACGAGAAGGGTTATCTATCAACAAATACCTTCGAGTTCG
1 ATATCAAATTTACAGCATAACTCAAGACAAGAAGGGTTATCTGTCAATAAA-ACCTTCGAGTTTG
* * *
2581057 ATTCCATTCAGCTCAAGGGCATGTCAAATTTACAGAATAAC
65 ATTACATTCAGCTCAA-GGCATATCAAATTTACAGCATAAC
2581098 GTAAGTCGAG
Statistics
Matches: 236, Mismatches: 30, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
166 3 0.01
167 79 0.33
168 122 0.52
169 1 0.00
170 31 0.13
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (168 bp):
ATATCAAATTTACAGCATAACTCAAGACAAGAAGGGTTATCTGTCAATAAAACCTTCGAGTTTGA
TTACATTCAGCTCAAGGCATATCAAATTTACAGCATAACTCAAGGCAAGAAGGGCTATCTACCAA
CTAAAACCTTCGAGTTCAATTACATTCAGCTCAAGGAC
Found at i:2581109 original size:85 final size:84
Alignment explanation
Indices: 2580657--2581097 Score: 532
Period size: 85 Copynumber: 5.2 Consensus size: 84
2580647 AATTTACAGA
** * * *
2580657 ATATCAAATTTACAGCATTTCTCAAGACAAGAAGGGTTATCTGTCAATCAAAACCTTCAAGTTTG
1 ATATCAAATTTACAGCATAACTCAAGGCAAGAAGGGTTATCTGTCAA-CAAAACCTTCGAGTTCG
2580722 ATTACATTCAGCTCAAGGAC
65 ATTACATTCAGCTCAAGGAC
* *
2580742 ATATCAAA---ACAGCATAACTCAAGGCAAGAAGGGTTATCTATCAACTAAAACCTTCGAGTTCA
1 ATATCAAATTTACAGCATAACTCAAGGCAAGAAGGGTTATCTGTCAAC-AAAACCTTCGAGTTCG
*
2580804 ATTTCATTCAGCTCAAGGAC
65 ATTACATTCAGCTCAAGGAC
* * * *
2580824 ATATCAAATTTACAGCATAACTCAAGGAAATAAGGGTTATCTGTCAATAAAGACCTTCGAGTTTG
1 ATATCAAATTTACAGCATAACTCAAGGCAAGAAGGGTTATCTGTCAACAAA-ACCTTCGAGTTCG
* * *
2580889 ATTATAATCAGCTCAGATG-C
65 ATTACATTCAGCTCA-AGGAC
* * * * *
2580909 ATATCAAATTTACAGCATAGCTCAAGGCAAGAAGGGCTATTTGCCAA-TAAACCTTCGAGTTCGA
1 ATATCAAATTTACAGCATAACTCAAGGCAAGAAGGGTTATCTGTCAACAAAACCTTCGAGTTCGA
* *
2580973 TTACATTTAGCTCGAGGAC
66 TTACATTCAGCTCAAGGAC
* * * *
2580992 TTATCAAATTTACAGCATAACTCAAGACGAGAAGGGTTATCTATCAACAAATACCTTCGAGTTCG
1 ATATCAAATTTACAGCATAACTCAAGGCAAGAAGGGTTATCTGTCAACAAA-ACCTTCGAGTTCG
* *
2581057 ATTCCATTCAGCTCAAGGGC
65 ATTACATTCAGCTCAAGGAC
* *
2581077 ATGTCAAATTTACAGAATAAC
1 ATATCAAATTTACAGCATAAC
2581098 GTAAGTCGAG
Statistics
Matches: 300, Mismatches: 47, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
81 1 0.00
82 74 0.25
83 63 0.21
84 7 0.02
85 153 0.51
86 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (84 bp):
ATATCAAATTTACAGCATAACTCAAGGCAAGAAGGGTTATCTGTCAACAAAACCTTCGAGTTCGA
TTACATTCAGCTCAAGGAC
Found at i:2581142 original size:253 final size:250
Alignment explanation
Indices: 2580657--2581144 Score: 619
Period size: 253 Copynumber: 1.9 Consensus size: 250
2580647 AATTTACAGA
** * * *
2580657 ATATCAAATTTACAGCATTTCTCAAGACAAGAAGGGTTATCTGTCAATCAAAACCTTCAAGTTTG
1 ATATCAAATTTACAGCATAGCTCAAGACAAGAAGGGCTATCTGCCAAT-AAAACCTTCAAGTTCG
*
2580722 ATTACATTCAGCTCAAGGACATATCAAAACAGCATAACTCAAGGCAAGAAGGGTTATCTATCAAC
65 ATTACATTCAGCTCAAGGACATATCAAAACAGCATAACTCAAGACAAGAAGGGTTATCTATCAAC
* *
2580787 TAAAACCTTCGAGTTCAATTTCATTCAGCTCAAGGACATATCAAATTTACAGCATAACTCAAGGA
130 TAAAACCTTCGAGTTCAATTCCATTCAGCTCAAGGACATATCAAATTTACAGAATAACTCAAGGA
* * * *
2580852 AATAAGGGTTATCTGTCAATAAAGACCTTCGAGTTTGATTATAATCAGCTCAGATGC
195 AATAA-GGCTATCTGACAACAAAGAACTTCGAGTTTGATTATAATCAGCTCAGATGC
* * *
2580909 ATATCAAATTTACAGCATAGCTCAAGGCAAGAAGGGCTATTTGCCAAT-AAACCTTCGAGTTCGA
1 ATATCAAATTTACAGCATAGCTCAAGACAAGAAGGGCTATCTGCCAATAAAACCTTCAAGTTCGA
* * * *
2580973 TTACATTTAGCTCGAGGACTTATCAAATTTACAGCATAACTCAAGACGAGAAGGGTTATCTATCA
66 TTACATTCAGCTCAAGGACATATCAAA---ACAGCATAACTCAAGACAAGAAGGGTTATCTATCA
* * *
2581038 AC-AAATACCTTCGAGTTCGATTCCATTCAGCTCAAGGGCATGTCAAATTTACAGAATAACGT-A
128 ACTAAA-ACCTTCGAGTTCAATTCCATTCAGCTCAAGGACATATCAAATTTACAGAATAAC-TCA
* *
2581101 AGTCGAGAA-AA-GCTATCTGACAACAAA-AATTGTCTAGTTTGATT
191 AG--GA-AATAAGGCTATCTGACAACAAAGAACT-TCGAGTTTGATT
2581145 TCATTCAACT
Statistics
Matches: 203, Mismatches: 24, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
250 38 0.19
252 47 0.23
253 111 0.55
254 1 0.00
255 4 0.02
256 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (250 bp):
ATATCAAATTTACAGCATAGCTCAAGACAAGAAGGGCTATCTGCCAATAAAACCTTCAAGTTCGA
TTACATTCAGCTCAAGGACATATCAAAACAGCATAACTCAAGACAAGAAGGGTTATCTATCAACT
AAAACCTTCGAGTTCAATTCCATTCAGCTCAAGGACATATCAAATTTACAGAATAACTCAAGGAA
ATAAGGCTATCTGACAACAAAGAACTTCGAGTTTGATTATAATCAGCTCAGATGC
Done.