genome.fa.s7610.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007610.1 Hibiscus syriacus cultivar Beakdansim tig00022531_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83313

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391--457	19	3.6	18	84	10	73	16	1	32	49	1.55
410--453	18	2.4	18	85	11	54	13	2	36	47	1.56
861--1015	25	6.1	25	71	14	97	46	4	1	47	1.31
861--1067	81	2.5	84	83	8	239	44	5	1	48	1.36
932--1063	68	1.9	71	84	4	180	42	5	2	50	1.37
861--1015	2	79.5	2	71	16	112	46	4	1	47	1.31
1036--1137	15	7.1	14	67	28	56	42	5	5	46	1.52
909--1078	85	2.1	80	86	7	234	42	5	2	48	1.40
1037--1076	13	2.9	13	88	7	53	40	5	7	47	1.54
909--1137	85	2.7	85	81	10	226	43	5	3	47	1.44
1097--1150	18	3.0	18	84	10	74	46	1	5	46	1.37
12144--12214	16	4.4	16	89	0	97	18	26	15	39	1.90
12484--12533	23	2.1	24	92	3	84	46	0	6	48	1.27
12685--12787	48	2.1	50	78	5	111	33	6	9	49	1.62
12777--12813	15	2.4	15	95	4	65	40	2	5	51	1.39
12786--12839	20	2.7	20	82	8	65	40	5	5	48	1.50
14240--14282	15	2.6	17	89	7	63	44	6	2	46	1.43
14366--14432	19	3.6	18	84	10	73	16	1	32	49	1.55
14385--14428	18	2.4	18	85	11	54	13	2	36	47	1.56
14525--14554	2	15.0	2	100	0	60	50	0	0	50	1.00
14575--14653	34	2.3	34	84	4	97	37	10	8	43	1.70
14839--14980	2	72.0	2	71	15	100	46	4	1	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14877--15058	89	2.1	88	90	3	285	43	4	2	48	1.39
15016--15120	15	7.1	14	71	22	58	41	5	5	46	1.51
15017--15056	13	2.9	13	88	7	53	40	5	7	47	1.54
15028--15084	26	2.3	26	84	6	73	42	7	5	45	1.53
14877--15120	89	2.8	89	82	8	250	43	5	3	47	1.42
15075--15133	18	3.3	18	81	11	77	44	1	5	49	1.34
26138--26208	16	4.4	16	89	0	97	18	26	15	39	1.90
26476--26525	23	2.1	24	92	3	84	46	0	6	48	1.27
26677--26779	48	2.1	50	78	5	111	33	6	9	49	1.62
26769--26798	13	2.3	13	100	0	60	40	0	6	53	1.27
26778--26821	18	2.6	18	85	7	56	38	6	6	47	1.57
28226--28270	19	2.4	18	85	10	63	46	4	2	46	1.35
28357--28423	19	3.6	18	84	10	73	16	1	32	49	1.55
28376--28419	18	2.4	18	85	11	54	13	2	36	47	1.56
28516--28549	2	18.0	2	88	11	54	50	0	0	50	1.00
28570--28650	34	2.3	35	81	8	85	38	9	8	43	1.69
28836--28977	2	73.0	2	69	18	86	45	4	1	47	1.33
28840--28985	29	4.8	30	70	19	97	46	4	1	47	1.32
28872--29057	91	2.1	90	90	3	293	44	4	2	48	1.38
29013--29085	13	5.3	13	79	9	74	41	6	5	46	1.54
29014--29087	28	2.6	29	81	12	82	41	6	5	45	1.53
28872--29119	91	2.7	91	82	7	258	43	5	3	47	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29013--29132	13	7.7	15	73	21	65	42	5	5	46	1.49
29074--29132	18	3.3	18	81	11	77	44	1	5	49	1.34
29013--29133	15	7.8	15	73	17	63	42	4	5	47	1.49
32793--32823	15	2.1	15	100	0	62	25	19	12	41	1.87
38450--38492	18	2.5	17	85	7	61	67	2	4	25	1.22
39645--40206	105	5.4	105	94	1	945	22	17	26	32	1.96
40774--40821	22	2.2	22	96	0	87	25	10	29	35	1.89
41424--41467	19	2.2	20	84	4	54	2	11	6	79	1.01
41443--41490	23	2.2	23	85	7	64	0	14	6	79	0.92
41439--41492	22	2.5	21	80	11	65	0	16	7	75	1.01
45114--45156	18	2.5	17	85	7	61	67	2	4	25	1.22
48314--48384	16	4.4	16	89	0	97	18	26	15	39	1.90
48654--48703	23	2.1	24	92	3	84	46	0	6	48	1.27
48855--48957	48	2.1	50	78	5	111	33	6	9	49	1.62
48947--48983	15	2.4	15	95	4	65	40	2	5	51	1.39
48956--49009	20	2.7	20	82	8	65	40	5	5	48	1.50
50408--50450	15	2.6	17	89	7	63	44	6	2	46	1.43
50546--50595	18	2.8	18	87	6	75	16	2	34	48	1.57
50692--50734	2	22.0	2	95	4	79	51	0	0	48	1.00
50755--50835	34	2.3	35	81	8	85	38	9	8	43	1.69
51021--51177	2	82.5	2	67	20	79	47	4	1	47	1.30
51082--51140	23	2.4	25	83	11	77	45	5	1	47	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51057--51234	86	2.1	83	87	7	252	44	5	2	47	1.39
51058--51185	15	9.0	14	70	21	54	46	4	1	46	1.33
51192--51221	15	2.0	15	100	0	60	40	6	6	46	1.56
51197--51273	28	2.8	28	71	11	70	40	7	5	46	1.55
51254--51307	18	3.0	18	84	10	74	46	1	5	46	1.37
60599--60641	18	2.5	17	85	7	61	67	2	4	25	1.22
61794--62355	105	5.4	105	94	1	945	22	17	26	32	1.96
62923--62970	22	2.2	22	96	0	87	25	10	29	35	1.89
63575--63634	20	2.9	21	80	7	61	1	13	6	78	1.02
63591--63643	23	2.4	22	84	6	72	0	15	5	79	0.91
66969--67012	17	2.5	17	74	3	52	75	2	2	20	1.03
67266--67308	18	2.5	17	85	7	61	67	2	4	25	1.22
70460--70530	16	4.4	16	89	0	97	18	26	15	39	1.90
70799--70848	23	2.1	24	92	3	84	46	0	6	48	1.27
71098--71149	20	2.6	19	79	8	59	40	5	5	48	1.51
72534--72573	15	2.8	15	88	7	57	45	7	2	45	1.45
72534--72581	15	3.4	14	80	11	53	43	8	4	43	1.53
72668--72720	18	2.9	18	83	10	72	15	0	33	50	1.44
72680--72722	12	3.6	11	81	12	50	13	0	37	48	1.43
72807--72853	2	24.0	2	86	4	69	48	0	2	48	1.13
73120--73248	2	67.0	2	67	18	69	45	4	1	48	1.32
73193--73321	17	7.4	16	68	23	66	42	5	3	48	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73176--73321	73	2.0	73	81	7	172	43	5	2	48	1.40
73296--73348	22	2.3	22	80	6	52	43	7	5	43	1.56
73343--73399	18	3.4	17	78	9	62	45	1	7	45	1.40

Tables:   1

The End!