genome.fa.s7611.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007611.1 Hibiscus syriacus cultivar Beakdansim tig00022662_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112837

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2342--2371	3	10.0	3	100	0	60	66	0	0	33	0.92
2640--2673	12	2.9	12	91	4	52	52	0	2	44	1.16
5313--5342	3	10.0	3	100	0	60	66	0	0	33	0.92
5617--5649	12	2.8	12	90	4	50	54	0	3	42	1.15
6603--6698	24	4.0	24	83	5	115	44	19	11	23	1.83
9218--9278	13	4.5	13	76	8	59	13	19	47	19	1.82
11367--11418	24	2.2	24	82	0	59	50	17	11	21	1.77
11383--11484	24	4.3	25	87	5	117	42	19	14	23	1.88
11390--11499	48	2.3	48	84	6	134	43	19	13	23	1.86
11390--11496	24	4.5	24	83	2	108	43	19	13	23	1.86
13887--13919	13	2.5	13	95	0	57	15	21	45	18	1.85
15984--16035	24	2.2	24	82	0	59	50	17	11	21	1.77
16007--16102	24	4.0	24	81	5	106	39	20	15	23	1.91
17289--17323	18	1.9	18	88	0	52	28	11	0	60	1.32
20765--20816	24	2.2	24	82	0	59	50	17	11	21	1.77
20781--20879	24	4.1	25	83	6	109	42	19	15	23	1.88
22960--23006	23	2.0	23	91	0	76	10	19	51	19	1.75
24896--24924	2	14.5	2	100	0	58	51	0	0	48	1.00
25090--25165	24	3.2	24	83	3	64	46	18	11	23	1.82
25107--25202	24	4.0	24	81	5	97	42	18	13	25	1.87
30001--30031	2	15.5	2	100	0	62	48	0	0	51	1.00
31272--31316	23	2.0	23	82	8	56	51	2	2	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31832--31871	18	2.2	18	90	0	62	45	2	0	52	1.14
34383--34434	15	3.2	17	71	18	56	51	1	1	44	1.23
37667--37735	27	2.4	29	80	7	70	43	2	2	50	1.32
40471--40680	65	3.2	65	78	9	182	31	24	18	25	1.98
42628--42667	21	1.9	21	89	0	62	55	7	7	30	1.56
48371--48401	14	2.1	15	94	5	55	29	12	0	58	1.35
48433--48473	18	2.2	19	87	12	59	43	0	2	53	1.13
51079--51146	27	2.4	28	82	4	75	42	2	2	51	1.32
56566--56642	37	2.1	37	80	9	86	51	2	3	41	1.34
56660--56692	12	2.8	12	90	4	50	54	0	3	42	1.15
60016--60067	19	2.7	19	87	0	77	23	17	34	25	1.96
67380--67488	48	2.3	48	82	6	123	18	12	17	51	1.76
67422--67486	12	5.4	12	77	14	71	12	13	18	55	1.69
67380--67488	24	4.5	24	77	11	100	18	12	17	51	1.76
68317--68356	18	2.2	18	86	0	53	42	2	0	55	1.13
78556--78598	20	2.1	21	86	4	61	53	2	4	39	1.34
81935--81975	18	2.2	19	87	12	59	43	0	4	51	1.23
82251--82773	263	2.0	263	99	0	1028	38	8	10	42	1.70
86110--86176	31	2.2	31	84	5	84	52	2	2	41	1.32
91961--92033	31	2.5	29	80	10	78	50	2	2	43	1.30
92459--92499	18	2.2	19	87	12	59	43	0	2	53	1.13
94010--94043	18	1.9	18	88	5	52	29	17	2	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94757--94847	31	3.1	30	72	10	80	50	2	5	41	1.37
95245--95276	2	16.0	2	100	0	64	50	0	0	50	1.00
98393--98423	2	15.5	2	100	0	62	51	0	0	48	1.00
101047--101106	27	2.3	27	85	5	79	53	3	3	40	1.34
101063--101113	27	2.0	26	82	14	63	50	3	3	41	1.39
104560--104594	2	17.5	2	100	0	70	51	0	0	48	1.00
106980--107021	20	2.0	21	82	13	52	52	0	4	42	1.22
107246--107318	31	2.4	30	78	10	78	50	4	5	39	1.44

Tables:   1

The End!