Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007614.1 Hibiscus syriacus cultivar Beakdansim tig00022689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46043
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Found at i:914 original size:33 final size:32
Alignment explanation
Indices: 872--955 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 32
862 GTGTGCGTGC
* * *
872 GCCTCGGTCACCATCGGTAATCCAAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGT
*
904 GGCCTCGGTCACCATC-GCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCAAGACGGGT
*
936 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
956 CCCCGGCCAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
31 14 0.31
32 16 0.36
33 15 0.33
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.17
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGT
Found at i:958 original size:31 final size:32
Alignment explanation
Indices: 872--958 Score: 106
Period size: 31 Copynumber: 2.7 Consensus size: 32
862 GTGTGCGTGC
* * *
872 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAA-CCCAGACGGGTG
905 GCCTCGGTCACCATC-GCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGC-AACCCAGACGGGTG
*
936 GTCTCGGTCACCATCGGCAACCC
1 GCCTCGGTCACCATCGGCAACCC
959 CGGCCATTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
31 19 0.40
32 12 0.25
33 17 0.35
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGGTG
Found at i:1083 original size:168 final size:169
Alignment explanation
Indices: 798--1308 Score: 862
Period size: 167 Copynumber: 3.1 Consensus size: 169
788 CCGGGTGCGG
798 ATTGGTGC-GGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCC
1 ATTGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCC
* *
862 GTGTGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTGGCCTCGGTCACCATC-GCAAAC
66 GTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAAC
926 CCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCC
131 CCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCC
* *
964 ATTGGTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCC
1 ATTGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGG-CCC
1029 CGTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAA
65 CGTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAA
1094 CCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCC
130 CCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCC
* *
1134 ATTGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGT--GGGAGTCTCGGTCACCATCAGGCCGC
1 ATTGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCC
* *
1197 TTGTGCGTGAGCCTCGGTCACCATCGGCAATCCCA-G-GGGTGGCCTCGGTCACCATCGGCAAAC
66 GTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAAC
*
1260 CC--ACGGGTGTCTCGGTCACCATCGG-TACCCCGGGCC
131 CCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCC
1296 ATTGGTGCGGGAG
1 ATTGGTGCGGGAG
1309 CCTCGGTCAC
Statistics
Matches: 330, Mismatches: 11, Indels: 12
0.93 0.03 0.03
Matches are distributed among these distances:
162 23 0.07
163 23 0.07
165 29 0.09
166 9 0.03
167 86 0.26
168 81 0.25
169 40 0.12
170 39 0.12
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.17
Consensus pattern (169 bp):
ATTGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCC
GTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAAC
CCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCC
Found at i:1116 original size:32 final size:33
Alignment explanation
Indices: 1040--1124 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
1030 GTGTGCGTGA
* *
1040 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
1073 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
1105 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
1125 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:1245 original size:31 final size:31
Alignment explanation
Indices: 1207--1391 Score: 142
Period size: 32 Copynumber: 5.6 Consensus size: 31
1197 TTGTGCGTGA
*
1207 GCCTCGGTCACCATCGGCAATCCCAGGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGGGTG
*
1238 GCCTCGGTCACCATCGGCAAACCCACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGGGTG
* * ** *
1268 GTCTCGGTCACCATCGGTACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCA-AAC---CCA--GG-G-GTG
**
1307 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCA-G-GGGTG
1341 G-CTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAG--GGGTG
*
1372 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
1392 CCCCGGGCCA
Statistics
Matches: 125, Mismatches: 16, Indels: 25
0.75 0.10 0.15
Matches are distributed among these distances:
30 17 0.14
31 31 0.25
32 44 0.35
33 1 0.01
34 5 0.04
35 2 0.02
36 5 0.04
37 1 0.01
38 1 0.01
39 1 0.01
40 17 0.14
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (31 bp):
GCCTCGGTCACCATCGGCAAACCCAGGGGTG
Found at i:1442 original size:104 final size:102
Alignment explanation
Indices: 1233--1482 Score: 283
Period size: 104 Copynumber: 2.4 Consensus size: 102
1223 GCAATCCCAG
*
1233 GGGTGGCCTCGGTCACCATCGGCAAACCC-ACGGGTGTCTCGGTCACCATCGGTACCCCGGGCCA
1 GGGTGG-CTCGGTCACCATCGGCAAACCCGACGGGTGTCTCGGTCACCATCGGAACCCCGGGCCA
** * *
1297 TTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGC
65 TTGGTGCGGGAGCCTCGCACACAACCGGCAGT-CCAGGC
1336 GGGTGGCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCC
1 GGGTGGCTCGGTCACCATCGGCAAACCC-GACGGGTGTCTCGGTCACCATCGG-AACCCCGGGCC
* * **
1401 ATTGGTGCGGGAGTGC-CGCACAGAACCGGGC-GT-TGGTGC
64 ATTGGTGCGGGAG-CCTCGCACACAACC-GGCAGTCCAG-GC
* * * *
1440 GGGAGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 GGGTGGCTCGGTCACCATCGGCAA-ACCCGACGGGTGTCTCGG
1483 CAACCCCAGG
Statistics
Matches: 127, Mismatches: 13, Indels: 13
0.83 0.08 0.08
Matches are distributed among these distances:
102 22 0.17
103 7 0.06
104 60 0.47
105 34 0.27
106 4 0.03
ACGTcount: A:0.15, C:0.35, G:0.35, T:0.15
Consensus pattern (102 bp):
GGGTGGCTCGGTCACCATCGGCAAACCCGACGGGTGTCTCGGTCACCATCGGAACCCCGGGCCAT
TGGTGCGGGAGCCTCGCACACAACCGGCAGTCCAGGC
Found at i:1795 original size:11 final size:11
Alignment explanation
Indices: 1781--1812 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
1771 TCCCGGTGGT
1781 GCTCCGGCGAC
1 GCTCCGGCGAC
*
1792 GCTCCGGCGAT
1 GCTCCGGCGAC
1803 GCTCCGGCGA
1 GCTCCGGCGA
1813 GAATTATCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:17318 original size:149 final size:147
Alignment explanation
Indices: 17040--18029 Score: 1055
Period size: 149 Copynumber: 6.9 Consensus size: 147
17030 CCTAAATCAT
*
17040 TTTATTTCACCCGGCCTACTCCACACGTTA-AGGCGCTCGGCGTAAGATCAGGTCATCCTGCCTA
1 TTTATTTCACCCGGCCTACTCCACACGTTAGA-GCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* * *
17104 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTAC-CCCACACGTTGAGGCGCT
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTCA-ACGTTGAAGTGCT
* * *
17168 CGACCTGATATTAAAGCGCA
129 CGGCGTGATATT-AAGCACA
* *
17188 TTATATTTCACCCGACCTACTCCACACGTTAGGGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
1 TT-TATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* * * *
17253 CTCCCCTCTAGAAGCGCTAGGCATGAACTCTGTCTACCCTGCTTACCCT-ACACGTTG-AGATGC
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTCA-ACGTTGAAG-TGC
17316 TCGGCGTGA-A-T-----C-
128 TCGGCGTGATATTAAGCACA
** * * * *
17328 TGGGA---CACCCTGCCTACTCCATACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTA
1 T-TTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* * * *
17390 CTCCCCTTTGGAAGCGCTCGGCATGCACTCTGTCT-CCTCTACCTACTCTCAACGTTGAAGCGCT
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACC-CTGCCTACTCTCAACGTTGAAGTGCT
*
17454 CGGCGTGACATTAAGGCACA
129 CGGCGTGATATTAA-GCACA
17474 TCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
1 T-TTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* **
17539 CTCCCCTCTGGAAGCGCTCGGCATGTACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTC
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTCAACGTTGAAGTGCTC
*
17604 GGCGTAATATTAAGGCACA
130 GGCGTGATATTAA-GCACA
*
17623 TCTTGTTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
1 T-TTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* **
17688 CTCCCCTCTGGAAGCGCTCGGCATGTACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTC
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTCAACGTTGAAGTGCTC
17753 GGCGTGATATT------A
130 GGCGTGATATTAAGCACA
* * * * *
17765 --TA--ACACCCTGCCTACTCCACACGTTAGAGCGCCCGGCGTAAGATCAAGTCATCCTGCCTAC
1 TTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTAC
* * * * * * * *
17826 TCCCCACTGGAAGCGCTCGGCATGAACTCTATC-CCCCTTCCAACTCTTAACGGTGAAGCGCTCG
66 TCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTCAACGTTGAAGTGCTCG
* * *
17890 GCGTGAAAAT-AG--GA
131 GCGTGATATTAAGCACA
* * * * * * *
17904 ---A--T-ACCCTGCCTACCCCATACATTAGAGCGCCCGGCGTAAGATCAGGTCATCCGGCCTAC
1 TTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTAC
* * * * * * *
17963 TCCCCACTGGAAGCGCTCGGCATGAACTCTGTC-CCCCTTCCAACTCTTAATGTTGAAGCGCTCG
66 TCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTCAACGTTGAAGTGCTCG
18027 GCG
131 GCG
18030 AAATTCCTTA
Statistics
Matches: 750, Mismatches: 68, Indels: 59
0.86 0.08 0.07
Matches are distributed among these distances:
136 36 0.05
137 307 0.41
138 5 0.01
139 3 0.00
140 2 0.00
141 1 0.00
142 1 0.00
145 1 0.00
146 2 0.00
147 1 0.00
148 4 0.01
149 384 0.51
150 3 0.00
ACGTcount: A:0.20, C:0.35, G:0.21, T:0.24
Consensus pattern (147 bp):
TTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTAC
TCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTCAACGTTGAAGTGCTCG
GCGTGATATTAAGCACA
Found at i:17445 original size:137 final size:137
Alignment explanation
Indices: 17203--18029 Score: 908
Period size: 137 Copynumber: 5.9 Consensus size: 137
17193 TTTCACCCGA
* *
17203 CCTACTCCACACGTTAGGGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTAGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* ** * *
17268 GCTAGGCATGAACTCTGTCTACCCTGCTTACCCT-ACACGTTG-AGATGCTCGGCGTGA-ATCTG
66 GCTCGGCATGAACTCTGTCCCCCCTGCCTACTCTCA-ACGTTGAAG-TGCTCGGCGTGACAT-TG
*
17330 GGACACCCTG
128 GAACACCCTG
* * * *
17340 CCTACTCCATACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCTTTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * * * *
17405 GCTCGGCATGCACTCTGTCTCCTCTACCTACTCTCAACGTTGAAGCGCTCGGCGTGACATTAAGG
66 GCTCGGCATGAACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCGTGACATT--GG
*
17470 CACATCTTATTTCACCCGG
129 ---A----A---CACCCTG
17489 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * *
17554 GCTCGGCATGTACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCGTAATATTAAGG
66 GCTCGGCATGAACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCGTGACATT--GG
*
17619 CACATCTTGTTTCACCCGG
129 -A-A--------CACCCTG
17638 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * **
17703 GCTCGGCATGTACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCGTGATATTATAA
66 GCTCGGCATGAACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCGTGACATTGGAA
17768 CACCCTG
131 CACCCTG
* * * *
17775 CCTACTCCACACGTTAGAGCGCCCGGCGTAAGATCAAGTCATCCTGCCTACTCCCCACTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * * * * * * *
17840 GCTCGGCATGAACTCTAT-CCCCCTTCCAACTCTTAACGGTGAAGCGCTCGGCGTGAAAATAGGA
66 GCTCGGCATGAACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCGTG-ACATTGGA
*
17904 ATACCCTG
130 ACACCCTG
* * * * * * *
17912 CCTACCCCATACATTAGAGCGCCCGGCGTAAGATCAGGTCATCCGGCCTACTCCCCACTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * * * *
17977 GCTCGGCATGAACTCTGT-CCCCCTTCCAACTCTTAATGTTGAAGCGCTCGGCG
66 GCTCGGCATGAACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCG
18030 AAATTCCTTA
Statistics
Matches: 613, Mismatches: 56, Indels: 42
0.86 0.08 0.06
Matches are distributed among these distances:
136 32 0.05
137 308 0.50
138 5 0.01
139 2 0.00
144 1 0.00
145 1 0.00
146 2 0.00
147 2 0.00
149 260 0.42
ACGTcount: A:0.20, C:0.35, G:0.22, T:0.23
Consensus pattern (137 bp):
CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
GCTCGGCATGAACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCGTGACATTGGAA
CACCCTG
Found at i:17571 original size:286 final size:281
Alignment explanation
Indices: 17047--18029 Score: 1123
Period size: 286 Copynumber: 3.4 Consensus size: 281
17037 CATTTTATTT
17047 CACCCGGCCTACTCCACACGTTA-AGGCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCT
1 CACCCGGCCTACTCCACACGTTAGA-GCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCT
* * * * *
17111 CTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTAC-CCCACACGTTGAGGCGCTCGACCTG
65 CTGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCA-ACGTTGAAGCGCTCGGCGTG
* *
17175 ATATTAAAGCGCATTATATTTCACCCGACCTACTCCACACGTTAGGGCGCTCGGCGTAAGACCAG
129 A-ATT-AAGC-CATT-TATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAG
* * * *
17240 GTCATCCTGCCTACTCCCCTCTAGAAGCGCTAGGCATGAACTCTGTCTACCCTGCTTACCCTACA
190 GTCATCCTGCCTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTC-CCCCTGCCTACCCTACA
*
17305 CGTTG-AGATGCTCGGCGTGAATCTGGGA
254 CGTTGAAG-TGCTCGGCGTGAATCTGGAA
* * * *
17333 CACCCTGCCTACTCCATACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCTT
1 CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCTC
* * *
17398 TGGAAGCGCTCGGCATGCACTCTGTCTCCTCTACCTACTCTCAACGTTGAAGCGCTCGGCGTGAC
66 TGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGA-
17463 ATTAAGGCACATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGT
130 ATTAA-GC-CAT-TTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGT
* *
17528 CATCCTGCCTACTCCCCTCTGGAAGCGCTCGGCATGTACTCTGTCCCCCCTGCCTACTCT-CAAC
192 CATCCTGCCTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGT-CCCCCTGCCTACCCTAC-AC
*
17592 GTTGAAGTGCTCGGCGT-AATATTAAGGCACA
255 GTTGAAGTGCTCGGCGTGAAT-CT--GG-A-A
*
17623 TCTTGTTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
1 --------CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCCTA
* * *
17688 CTCCCCTCTGGAAGCGCTCGGCATGTACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTC
58 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTC
** * * *
17753 GGCGTG-A-T-----A-TTATAACACCCTGCCTACTCCACACGTTAGAGCGCCCGGCGTAAGATC
123 GGCGTGAATTAAGCCATTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACC
* * * * * *
17810 AAGTCATCCTGCCTACTCCCCACTGGAAGCGCTCGGCATGAACTCTATCCCCCTTCCAACTCTTA
188 AGGTCATCCTGCCTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCCCCCTGCCTAC-CCTA
* * **
17875 -ACGGTGAAGCGCTCGGCGTGAAAATAGGAA
252 CACGTTGAAGTGCTCGGCGTGAATCT-GGAA
* * * * * * * *
17905 TACCCTGCCTACCCCATACATTAGAGCGCCCGGCGTAAGATCAGGTCATCCGGCCTACTCCCCAC
1 CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCTC
* * * *
17970 TGGAAGCGCTCGGCATGAACTCTGTC-CCCCTTCCAACTCTTAATGTTGAAGCGCTCGGCG
66 TGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCG
18030 AAATTCCTTA
Statistics
Matches: 608, Mismatches: 66, Indels: 59
0.83 0.09 0.08
Matches are distributed among these distances:
273 29 0.05
274 81 0.13
282 1 0.00
283 1 0.00
284 3 0.00
285 34 0.06
286 327 0.54
287 8 0.01
288 3 0.00
290 1 0.00
295 1 0.00
296 1 0.00
298 118 0.19
ACGTcount: A:0.20, C:0.35, G:0.21, T:0.23
Consensus pattern (281 bp):
CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCTC
TGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGAA
TTAAGCCATTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATC
CTGCCTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCCCCCTGCCTACCCTACACGTTGAA
GTGCTCGGCGTGAATCTGGAA
Found at i:18776 original size:32 final size:33
Alignment explanation
Indices: 18700--18784 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
18690 GTGTGCGTGC
* * *
18700 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
18733 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
18765 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
18785 CCCCGACCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:18945 original size:32 final size:33
Alignment explanation
Indices: 18869--18953 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
18859 GTGTGCGTGA
* *
18869 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
18902 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
18934 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
18954 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:18947 original size:169 final size:168
Alignment explanation
Indices: 18668--19140 Score: 817
Period size: 169 Copynumber: 2.8 Consensus size: 168
18658 GGCCACGACA
* *
18668 CCTCGGTCACCATCAGGCCCCCGTGTGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 CCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
18733 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGACCATTGG
66 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGCCATTGG
* *
18798 TGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAG
131 TGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGC-GGAG
18837 CCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 CCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
18902 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
18967 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGAG
130 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGAG
* * *
19006 TCTCGGTCACCATCAGG-CCGCTTGTGCGTGAGCCTCGGTCACCATCGGCAATCC-AGGCGGGTG
1 CCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
* *
19069 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTC-GTCACCATCGGTAACCCGGGCCATTGG
66 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGCCATTGG
19133 TGCGGGAG
131 TGCGGGAG
19141 CCTCGGTCAC
Statistics
Matches: 293, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
165 17 0.06
166 16 0.05
167 46 0.16
168 35 0.12
169 139 0.47
170 40 0.14
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (168 bp):
CCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGCCATTGG
TGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGAG
Found at i:19073 original size:32 final size:32
Alignment explanation
Indices: 19037--19227 Score: 181
Period size: 32 Copynumber: 5.7 Consensus size: 32
19027 TTGTGCGTGA
*
19037 GCCTCGGTCACCATCGGCAATCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAACCCAGGCGGGTG
*
19069 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGC-AACCCAGGCGGGTG
* * * *
19101 GTCTC-GTCACCATCGGTAACCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAACCCAGG-C----G-G-GTG
*
19139 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCA-ACCCAGGCGGGTG
*
19173 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGC-AACCCAGGCGGGTG
*
19205 GTCTCGGTCACCATCGGCAACCC
1 GCCTCGGTCACCATCGGCAACCC
19228 CGGGCCATTG
Statistics
Matches: 131, Mismatches: 15, Indels: 27
0.76 0.09 0.16
Matches are distributed among these distances:
30 6 0.05
31 17 0.13
32 39 0.30
33 39 0.30
34 3 0.02
35 2 0.02
36 2 0.02
37 1 0.01
39 4 0.03
40 13 0.10
41 5 0.04
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAACCCAGGCGGGTG
Found at i:19177 original size:33 final size:32
Alignment explanation
Indices: 19135--19224 Score: 126
Period size: 33 Copynumber: 2.8 Consensus size: 32
19125 GCCATTGGTG
* ** *
19135 CGGGAGCCTCGGTCACCATCGGCAGTCCCAGG
1 CGGGTGCCTCGGTCACCATCGGCAAACCCAGA
19167 CGGGTGGCCTCGGTCACCATCGGCAAACCCAGA
1 CGGGT-GCCTCGGTCACCATCGGCAAACCCAGA
*
19200 CGGGTGTCTCGGTCACCATCGGCAA
1 CGGGTGCCTCGGTCACCATCGGCAA
19225 CCCCGGGCCA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
32 23 0.44
33 29 0.56
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (32 bp):
CGGGTGCCTCGGTCACCATCGGCAAACCCAGA
Found at i:19208 original size:104 final size:105
Alignment explanation
Indices: 19029--19246 Score: 386
Period size: 104 Copynumber: 2.1 Consensus size: 105
19019 CAGGCCGCTT
*
19029 GTGCGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCA
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCA
*
19094 GACGGGTGTCTC-GTCACCATCGGTAA-CCCGGGCCATTG
66 GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
19132 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAAT-CCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
19197 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
65 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
19238 GTGCGGGAG
1 GTGCGGGAG
19247 TGCCGCACAG
Statistics
Matches: 109, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
103 27 0.25
104 48 0.44
105 13 0.12
106 21 0.19
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (105 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCA
GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:19281 original size:104 final size:103
Alignment explanation
Indices: 19069--19377 Score: 320
Period size: 104 Copynumber: 3.1 Consensus size: 103
19059 CAGGCGGGTG
*
19069 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGTCACCATCGGTAA-CCCGGGCCATTGG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGTCACCATCGGCAACCCCGGGCCATTGG
* ** ** * * *
19133 TGCGGGAG-CCTCGGTCACCATC-GGCAGTCCCAG-GCGGGTG
66 TGCGGGAGTAC-CGCACAGAACCGGGC-GT--CGGTGCGGG-A
19173 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTC-GTCACCATCGGCAACCCCGGGCCATTG
* *
19238 GTGCGGGAGTGCCGCACAGAACCGGGCGTTGGTGCGGGA
65 GTGCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
* * *
19277 GCCTCGGTCACCATCGGCAACCCCCGAC-GG-G--T-G---CC-TCGGCAACCCCAGGCCATTGG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGTCACCATCGGCAACCCCGGGCCATTGG
* *
19333 TGCGGGAGTACCGCACAGAACCGAGCGCTGGGTGCGGGA
66 TGCGGGAGTACCGCACAGAACCGGGCG-TCGGTGCGGGA
19372 GCCTCG
1 GCCTCG
19378 CACAGCGTCG
Statistics
Matches: 183, Mismatches: 16, Indels: 21
0.83 0.07 0.10
Matches are distributed among these distances:
94 45 0.25
95 18 0.10
98 1 0.01
100 1 0.01
102 1 0.01
103 2 0.01
104 64 0.35
105 18 0.10
106 29 0.16
107 4 0.02
ACGTcount: A:0.17, C:0.35, G:0.34, T:0.14
Consensus pattern (103 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGTCACCATCGGCAACCCCGGGCCATTGG
TGCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
Found at i:19629 original size:11 final size:11
Alignment explanation
Indices: 19615--19646 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
19605 TCCCGGTGGT
19615 GCTCCGGCGAC
1 GCTCCGGCGAC
*
19626 GCTCCGGCGAT
1 GCTCCGGCGAC
19637 GCTCCGGCGA
1 GCTCCGGCGA
19647 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:27749 original size:32 final size:33
Alignment explanation
Indices: 27673--27757 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
27663 GTGTGCGTGC
* * *
27673 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
27706 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
27738 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
27758 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:27816 original size:169 final size:170
Alignment explanation
Indices: 27537--28113 Score: 1006
Period size: 166 Copynumber: 3.4 Consensus size: 170
27527 ACGTGTGCGT
**
27537 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTC-GTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
27601 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
27666 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
27706 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
27770 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATC---CCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
27832 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
27872 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
27937 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGC-GGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
28000 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
28040 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
28105 GTGCGGGAG
66 GTGCGGGAG
28114 CCTCGGTCAC
Statistics
Matches: 390, Mismatches: 13, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
166 119 0.31
167 41 0.11
168 117 0.30
169 95 0.24
170 18 0.05
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:27915 original size:32 final size:33
Alignment explanation
Indices: 27839--27923 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
27829 GTGTGCGTGA
* *
27839 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
27872 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
27904 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
27924 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:28083 original size:32 final size:32
Alignment explanation
Indices: 28007--28195 Score: 182
Period size: 32 Copynumber: 5.6 Consensus size: 32
27997 TTGTGCGTGA
*
28007 GCCTCGGTCACCATCGGCAATCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
28039 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
* * * *
28072 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGA
1 GCCTCGGTCACCATCGGCAA--AC---CCA---G-GCGGGT
** *
28113 GCCTCGGTCACCATCGGCAGTCCCAGGCGTG-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
28144 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
28176 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
28196 CCCCGGGCCA
Statistics
Matches: 129, Mismatches: 17, Indels: 21
0.77 0.10 0.13
Matches are distributed among these distances:
31 27 0.21
32 41 0.32
33 31 0.24
34 1 0.01
36 3 0.02
37 3 0.02
39 1 0.01
40 1 0.01
41 21 0.16
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
Found at i:28148 original size:31 final size:32
Alignment explanation
Indices: 28108--28195 Score: 115
Period size: 31 Copynumber: 2.8 Consensus size: 32
28098 GCCATTGGTG
* ** *
28108 CGGGAGCCTCGGTCACCATCGGCAGTCCCAGG
1 CGGGTGCCTCGGTCACCATCGGCAAACCCAGA
*
28140 CGTG-GCCTCGGTCACCATCGGCAAACCCAGA
1 CGGGTGCCTCGGTCACCATCGGCAAACCCAGA
*
28171 CGGGTGTCTCGGTCACCATCGGCAA
1 CGGGTGCCTCGGTCACCATCGGCAA
28196 CCCCGGGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
31 27 0.55
32 22 0.45
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.15
Consensus pattern (32 bp):
CGGGTGCCTCGGTCACCATCGGCAAACCCAGA
Found at i:28175 original size:104 final size:105
Alignment explanation
Indices: 27999--28217 Score: 395
Period size: 104 Copynumber: 2.1 Consensus size: 105
27989 CAGGCCGCTT
*
27999 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGC-GGTGGCCTCGGTCACCATCGGCAAACCC
*
28064 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
65 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
28105 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGC-GTGGCCTCGGTCACCATCGGCAAACCCA
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCA
28169 GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
28209 GTGCGGGAG
1 GTGCGGGAG
28218 TGCCGCACAG
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
104 76 0.69
106 34 0.31
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (105 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCA
GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:28252 original size:104 final size:104
Alignment explanation
Indices: 28040--28348 Score: 331
Period size: 104 Copynumber: 3.1 Consensus size: 104
28030 CAGGCGGGTG
*
28040 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* ** ** * * *
28105 GTGCGGGAG-CCTCGGTCACCATC-GGCAGTCCCAG-GCGTG-
66 GTGCGGGAGTAC-CGCACAGAACCGGGC-GT--CGGTGCGGGA
28144 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
28209 GTGCGGGAGTGCCGCACAGAACCGGGCGTTGGTGCGGGA
66 GTGCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
* * *
28248 GCCTCGGTCACCATCGGCAACCCCCGAC-GG-G--T--G---CC-TCGGCAACCCCAGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
28303 GTGCGGGAGTACCGCACAGAACCGAGCGCTGGGTGCGGGA
66 GTGCGGGAGTACCGCACAGAACCGGGCG-TCGGTGCGGGA
28343 GCCTCG
1 GCCTCG
28349 CACAGCGTCG
Statistics
Matches: 184, Mismatches: 16, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
94 45 0.24
95 18 0.10
98 1 0.01
100 1 0.01
102 2 0.01
103 6 0.03
104 107 0.58
105 4 0.02
ACGTcount: A:0.17, C:0.35, G:0.34, T:0.14
Consensus pattern (104 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
Found at i:28599 original size:11 final size:11
Alignment explanation
Indices: 28585--28616 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
28575 TCCCGGTGGT
28585 GCTCCGGCGAC
1 GCTCCGGCGAC
*
28596 GCTCCGGCGAT
1 GCTCCGGCGAC
28607 GCTCCGGCGA
1 GCTCCGGCGA
28617 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:36710 original size:32 final size:33
Alignment explanation
Indices: 36634--36718 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
36624 GTGTGCGTGC
* * *
36634 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
36667 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
36699 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
36719 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:36826 original size:168 final size:170
Alignment explanation
Indices: 36498--37075 Score: 1015
Period size: 169 Copynumber: 3.4 Consensus size: 170
36488 ACGTGTGCGT
**
36498 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
36563 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTC-GTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
36627 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
36667 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
36731 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGT-
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
36795 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
36835 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
36900 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
36964 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
37004 GCCTCGGTCACCATCGGCAAACCCAGAC-GG-GTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
37067 GTGCGGGAG
66 GTGCGGGAG
37076 CCTCGGTCAC
Statistics
Matches: 393, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
167 41 0.10
168 150 0.38
169 202 0.51
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:36878 original size:32 final size:33
Alignment explanation
Indices: 36802--36886 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
36792 CGTTGCGTGA
* *
36802 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
36835 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
36867 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
36887 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:37013 original size:33 final size:33
Alignment explanation
Indices: 36971--37159 Score: 188
Period size: 33 Copynumber: 5.6 Consensus size: 33
36961 TTGTGCGTGA
*
36971 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
37004 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * *
37036 --CTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
37074 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
37108 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
37140 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
37160 CCCCGGGCCA
Statistics
Matches: 129, Mismatches: 16, Indels: 23
0.77 0.10 0.14
Matches are distributed among these distances:
30 21 0.16
31 1 0.01
32 19 0.15
33 59 0.46
34 2 0.02
35 2 0.02
36 2 0.02
37 1 0.01
40 1 0.01
41 21 0.16
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:37085 original size:104 final size:106
Alignment explanation
Indices: 36963--37181 Score: 397
Period size: 104 Copynumber: 2.1 Consensus size: 106
36953 CAGGCCGCTT
*
36963 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
37028 AGAC-GG-GTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
37067 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
37132 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
37173 GTGCGGGAG
1 GTGCGGGAG
37182 TGCCGCACAG
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
104 67 0.61
105 2 0.02
106 41 0.37
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:37216 original size:104 final size:102
Alignment explanation
Indices: 37004--37312 Score: 325
Period size: 104 Copynumber: 3.1 Consensus size: 102
36994 CAGGCGGGTG
*
37004 GCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCGGTCACCATCGGTAACCCCGGGCCATTGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGT
* ** ** * * *
37069 GCGGGAG-CCTCGGTCACCATC-GGCAGTCCCAG-GCGGGTG
66 GCGGGAGTAC-CGCACAGAACCGGGC-GT--CGGTGCGGG-A
37108 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGAC-GG-GTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
37173 GTGCGGGAGTGCCGCACAGAACCGGGCGTTGGTGCGGGA
64 GTGCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
* * *
37212 GCCTCGGTCACCATCGGCAACCCCCGACGGG--T--G---CC-TCGGCAACCCCAGGCCATTGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGT
* *
37269 GCGGGAGTACCGCACAGAACCGAGCGCTGGGTGCGGGA
66 GCGGGAGTACCGCACAGAACCGGGCG-TCGGTGCGGGA
37307 GCCTCG
1 GCCTCG
37313 CACAGCGTCG
Statistics
Matches: 183, Mismatches: 16, Indels: 21
0.83 0.07 0.10
Matches are distributed among these distances:
94 45 0.25
95 18 0.10
98 1 0.01
100 1 0.01
102 1 0.01
103 2 0.01
104 55 0.30
105 7 0.04
106 49 0.27
107 4 0.02
ACGTcount: A:0.17, C:0.35, G:0.34, T:0.14
Consensus pattern (102 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGT
GCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
Found at i:37563 original size:11 final size:11
Alignment explanation
Indices: 37549--37580 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
37539 TCCCGGTGGT
37549 GCTCCGGCGAC
1 GCTCCGGCGAC
*
37560 GCTCCGGCGAT
1 GCTCCGGCGAC
37571 GCTCCGGCGA
1 GCTCCGGCGA
37581 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:45640 original size:30 final size:31
Alignment explanation
Indices: 45604--45681 Score: 95
Period size: 30 Copynumber: 2.5 Consensus size: 31
45594 GTGTGCGTGC
* * *
45604 GCCTCGGTCACCATCGTAATCCAAGGCGGG-
1 GCCTCGGTCACCATCGCAAACCAAGACGGGT
*
45634 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATC-GCAAACCAAGACGGGT
*
45666 GTCTCGGTCACCATCG
1 GCCTCGGTCACCATCG
45682 GCAACCCCCC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
30 15 0.37
31 12 0.29
32 14 0.34
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.17
Consensus pattern (31 bp):
GCCTCGGTCACCATCGCAAACCAAGACGGGT
Found at i:45677 original size:32 final size:31
Alignment explanation
Indices: 45604--45685 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 31
45594 GTGTGCGTGC
* * *
45604 GCCTCGGTCACCATC-GTAATCCAAGGCGGG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGG
*
45634 GCCTCGGTCACCATCGGCAAACCCAGACGGG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGG
*
45665 TGTCTCGGTCACCATCGGCAA
1 -GCCTCGGTCACCATCGGCAA
45686 CCCCCCATTG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
30 15 0.33
31 11 0.24
32 19 0.42
ACGTcount: A:0.21, C:0.35, G:0.28, T:0.16
Consensus pattern (31 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGG
Found at i:45737 original size:164 final size:165
Alignment explanation
Indices: 45469--46036 Score: 916
Period size: 164 Copynumber: 3.4 Consensus size: 165
45459 ACGTGTGCGT
**
45469 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATC-GCAACCCCGGCCATTGG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GCCATTGG
45533 TGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGT
65 TGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGT
* *
45598 GCGTGCGCCTCGGTCACCATC-GTAATCCAAGGCGGG
130 GCGTGAGCCTCGGTCACCATCGGCAATCC-AGGCGGG
45634 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-CCATTGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGCCATTGGT
* *
45698 GCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTG
66 GCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTG
*
45763 CGTGAGCCTC-GTCACCATCGGCAATCCAGGCGTG
131 CGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGG
45797 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC--GCCATTG
* * *
45862 GTGC-GG-GTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
64 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
45924 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGTG
129 TGCGTGAGCCTCGGTCACCATCGGCAAT-CCAGGCGG-G
*
45963 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC--GCCATTG
46028 GTGCGGGAG
64 GTGCGGGAG
46037 CCTCGGT
Statistics
Matches: 379, Mismatches: 14, Indels: 17
0.92 0.03 0.04
Matches are distributed among these distances:
163 88 0.23
164 147 0.39
165 54 0.14
166 87 0.23
167 2 0.01
168 1 0.00
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (165 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGCCATTGGT
GCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTG
CGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGG
Found at i:45807 original size:30 final size:31
Alignment explanation
Indices: 45733--45851 Score: 118
Period size: 32 Copynumber: 3.8 Consensus size: 31
45723 TTTGGTGCGG
* *
45733 GAGCCTCGGTCACCATCAGGC-CCCCGTGTGCGT
1 GAGCCTCGGTCACCATC-GGCAACCC-AG-GCGT
*
45766 GAGCCTC-GTCACCATCGGCAATCCAGGCGT
1 GAGCCTCGGTCACCATCGGCAACCCAGGCGT
* *
45796 G-GCCTCGGTCACCATCGGCAAACCCAGACGG
1 GAGCCTCGGTCACCATCGGC-AACCCAGGCGT
* *
45827 GTGTCTCGGTCACCATCGGCAACCC
1 GAGCCTCGGTCACCATCGGCAACCC
45852 CGGGCCATTG
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
29 5 0.07
30 17 0.23
31 18 0.24
32 28 0.37
33 7 0.09
ACGTcount: A:0.18, C:0.39, G:0.28, T:0.16
Consensus pattern (31 bp):
GAGCCTCGGTCACCATCGGCAACCCAGGCGT
Found at i:45967 original size:32 final size:32
Alignment explanation
Indices: 45931--46011 Score: 119
Period size: 32 Copynumber: 2.5 Consensus size: 32
45921 TTGTGCGTGA
* *
45931 GCCTCGGTCACCATCGGCAATCCCAGGC-GGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
45962 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGACGGGT
*
45995 GTCTCGGTCACCATCGG
1 GCCTCGGTCACCATCGG
46012 TAACCCCGGG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
32 42 0.93
33 3 0.07
ACGTcount: A:0.17, C:0.37, G:0.30, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGT
Done.