genome.fa.s7615.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007615.1 Hibiscus syriacus cultivar Beakdansim tig00022706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95037

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3436--3476	2	21.0	2	95	5	75	48	0	0	51	1.00
5090--5144	27	2.0	27	85	0	74	34	12	45	7	1.70
6760--6790	10	3.1	10	90	0	53	35	16	0	48	1.46
11897--11931	15	2.3	15	90	0	52	17	20	28	34	1.95
13360--13408	15	3.1	15	85	8	62	75	4	6	14	1.14
13366--13408	5	8.2	5	92	2	59	76	2	4	16	1.05
19319--19406	33	2.5	35	85	8	110	30	9	17	43	1.80
19294--19406	33	3.4	33	80	8	106	30	9	19	39	1.84
19451--19885	37	12.7	37	64	20	178	37	12	20	29	1.90
19404--19594	104	1.8	103	84	5	260	39	12	19	28	1.88
19480--19661	65	2.8	66	81	5	233	36	13	20	29	1.91
19729--19797	36	1.9	36	82	5	86	39	13	20	27	1.89
19536--19939	102	4.0	102	86	4	536	36	12	19	31	1.89
19597--19982	101	3.9	97	81	8	276	37	12	18	31	1.89
19966--20013	21	2.3	21	96	0	87	41	10	20	27	1.85
20444--20479	18	2.0	18	88	0	54	41	30	8	19	1.81
20879--20933	22	2.5	22	96	0	101	23	10	27	38	1.88
21567--21606	13	2.9	13	88	7	53	2	12	12	72	1.22
21577--21638	13	4.9	13	77	13	58	0	14	8	77	0.98
21590--21639	24	2.1	23	85	10	66	0	14	6	80	0.90
21577--21639	24	2.8	22	77	15	58	0	14	7	77	0.97
24575--24616	22	1.9	23	85	9	61	73	2	2	21	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24564--24627	21	3.0	23	71	13	64	68	1	1	28	1.07
24596--24626	13	2.4	13	100	0	62	70	0	0	29	0.87
25760--25822	2	33.5	2	84	12	89	50	0	0	49	1.00
50068--50113	6	7.7	6	100	0	92	32	50	17	0	1.47
50784--50824	21	2.0	21	85	0	55	34	29	17	19	1.94
52827--53120	111	2.6	110	87	3	419	32	12	11	43	1.78
53672--53959	111	2.6	111	89	3	438	30	11	10	47	1.73
52503--54650	782	2.7	765	89	4	3185	37	9	10	43	1.71
54390--54650	111	2.3	112	85	2	357	32	11	10	45	1.74
53701--55321	692	2.4	688	91	3	2595	36	9	10	42	1.72
55143--55419	111	2.5	111	93	0	473	31	11	10	45	1.76
56559--57390	220	3.8	220	90	0	1279	25	14	26	34	1.94
57768--57997	103	2.3	103	79	5	234	34	12	16	36	1.86
58065--58180	37	3.2	36	72	3	106	37	11	17	33	1.85
65645--65675	5	6.2	5	92	0	53	80	3	0	16	0.83
69298--69328	10	3.1	10	90	0	53	35	16	0	48	1.46
74456--74490	15	2.3	15	90	0	52	17	20	28	34	1.95
77787--77875	43	2.1	43	93	0	151	30	7	12	49	1.69
81244--81294	2	27.5	2	81	15	65	50	0	0	49	1.00
81814--81926	33	3.4	33	83	8	124	30	10	20	38	1.86
81961--82114	37	4.4	37	75	17	148	37	13	22	25	1.91
81924--82114	104	1.8	103	86	3	276	39	12	20	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82000--82181	65	2.8	66	81	6	217	35	13	21	29	1.91
82056--82511	203	2.3	198	82	4	556	36	12	19	30	1.89
82056--82459	102	4.0	101	86	5	525	36	12	19	31	1.89
82132--82502	101	3.7	97	82	7	271	38	12	19	30	1.89
82486--82533	21	2.3	21	92	0	78	39	10	22	27	1.87
82498--82540	21	2.0	21	90	0	68	48	9	13	27	1.73
83396--83450	22	2.5	22	90	0	92	25	10	25	38	1.88
84095--84158	13	4.9	13	75	21	53	0	14	7	78	0.96
84082--84158	39	2.0	39	82	10	95	1	14	7	76	1.06
84081--84125	13	3.3	14	84	12	58	2	11	11	75	1.13
84116--84171	16	3.4	17	70	9	53	1	16	5	76	1.05
84108--84159	25	2.1	24	86	10	70	0	13	5	80	0.88
84113--84173	31	2.0	31	84	12	81	1	18	4	75	1.06
87120--87147	13	2.2	13	100	0	56	71	0	0	28	0.86
88285--88347	2	33.5	2	84	12	89	50	0	0	49	1.00

Tables:   1

The End!