Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007619.1 Hibiscus syriacus cultivar Beakdansim tig00022981_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64053
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Found at i:881 original size:95 final size:95
Alignment explanation
Indices: 726--911 Score: 309
Period size: 95 Copynumber: 2.0 Consensus size: 95
716 TGCGAGGCTG
* *
726 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
*
791 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* ** *
821 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
886 GTCGGGGGTTGCCGATGGTGACCGAG
66 GTCGGGGGTTGCCGATGGTGACCGAG
912 ACACCCGTCT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 84 1.00
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:911 original size:32 final size:32
Alignment explanation
Indices: 875--975 Score: 141
Period size: 32 Copynumber: 3.2 Consensus size: 32
865 CCTGGGGTTG
*
875 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCCGGGGTTGCCGATGGTGA
* * *
907 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGGCACCCGTCCGGGGTTGCCGATGGTGA
*
939 CCGAGGCCACCCG-CCTGGGTTGCCGATGGTGA
1 CCGAGG-CACCCGTCCGGGGTTGCCGATGGTGA
971 CCGAG
1 CCGAG
976 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
32 55 0.90
33 6 0.10
ACGTcount: A:0.14, C:0.31, G:0.39, T:0.17
Consensus pattern (32 bp):
CCGAGGCACCCGTCCGGGGTTGCCGATGGTGA
Found at i:1099 original size:33 final size:32
Alignment explanation
Indices: 1022--1110 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
1012 CTCACCAATG
*
1022 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
1054 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
1087 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
1111 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:9418 original size:95 final size:95
Alignment explanation
Indices: 9264--9649 Score: 356
Period size: 95 Copynumber: 4.1 Consensus size: 95
9254 TGCGAGGCTG
* ** *
9264 CCGCACCCAGCGCTCGGTTCTGT-CGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
9328 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
9358 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
9423 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
9453 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
9515 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
9550 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCT--GGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
9612 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
9642 CCGCACCC
1 CCGCACCC
9650 GTGGCCTGGG
Statistics
Matches: 220, Mismatches: 60, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
92 32 0.15
93 13 0.06
94 22 0.10
95 91 0.41
96 32 0.15
97 30 0.14
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:9448 original size:32 final size:32
Alignment explanation
Indices: 9412--9545 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
9402 CCTGGGGTTG
* * *
9412 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
9444 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
9476 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
9508 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
9541 CCGAG
1 CCGAG
9546 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:9637 original size:32 final size:32
Alignment explanation
Indices: 9601--9705 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
9591 GGCCTGGTTG
9601 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
9633 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
9664 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
9696 CCGAGG-ACCC
1 CCGAGGCACCC
9706 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:9677 original size:63 final size:61
Alignment explanation
Indices: 9580--9712 Score: 239
Period size: 63 Copynumber: 2.1 Consensus size: 61
9570 GTGCGGCACT
*
9580 CCCGCACCCGTGGCCTGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
9641 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCT--GGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
9704 CCCGCACCC
1 CCCGCACCC
9713 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
61 16 0.23
63 53 0.77
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (61 bp):
CCCGCACCCGTGGCCTGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:9843 original size:30 final size:31
Alignment explanation
Indices: 9759--9889 Score: 174
Period size: 32 Copynumber: 4.2 Consensus size: 31
9749 CCTGGGGTTG
* * *
9759 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTC-TGGTTTGCCGATGGTGA
9791 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCT-GGTTTGCCGATGGTGA
9823 CCGAGAC-CCCGTCTGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGTTTGCCGATGGTGA
* * *
9853 CCGAGGCCACCCGCCTGGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGTTTGCCGATGGTGA
9885 CCGAG
1 CCGAG
9890 CCTCACGCAC
Statistics
Matches: 90, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
30 20 0.22
31 10 0.11
32 60 0.67
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (31 bp):
CCGAGACACCCGTCTGGTTTGCCGATGGTGA
Found at i:9984 original size:32 final size:32
Alignment explanation
Indices: 9943--10022 Score: 108
Period size: 32 Copynumber: 2.5 Consensus size: 32
9933 ATGGCCTGGG
* *
9943 TTGCCGATGGTGACCGA-GACACCCGTATGGTT
1 TTGCCGATGGTGACCGAGGACACCCGCATGG-A
* *
9975 TTGCCGATGGTGACCGAGGCCACCCGCCTGGA
1 TTGCCGATGGTGACCGAGGACACCCGCATGGA
10007 TTGCCGATGGTGACCG
1 TTGCCGATGGTGACCG
10023 GGGCTCACGC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
32 33 0.77
33 10 0.23
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGGACACCCGCATGGA
Found at i:18329 original size:94 final size:95
Alignment explanation
Indices: 18160--18546 Score: 365
Period size: 94 Copynumber: 4.1 Consensus size: 95
18150 TGCGAGGCTG
* ** *
18160 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
18224 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
18254 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
18319 GTC-GGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
18348 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
18410 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
18445 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
18509 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
18539 CCGCACCC
1 CCGCACCC
18547 GTGGCCTGGG
Statistics
Matches: 219, Mismatches: 61, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
94 113 0.52
95 59 0.27
96 24 0.11
97 23 0.11
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:18367 original size:32 final size:32
Alignment explanation
Indices: 18308--18440 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
18298 CCTGGGGTTG
* *
18308 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
18339 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
18371 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
18403 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
18436 CCGAG
1 CCGAG
18441 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:18428 original size:65 final size:63
Alignment explanation
Indices: 18308--18440 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
18298 CCTGGGGTTG
* * * * *
18308 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
18371 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
18436 CCGAG
1 CCGAG
18441 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:18534 original size:32 final size:32
Alignment explanation
Indices: 18498--18602 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
18488 CCTGGGGTTG
18498 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
18530 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
18561 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
18593 CCGAGG-ACCC
1 CCGAGGCACCC
18603 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:18553 original size:63 final size:63
Alignment explanation
Indices: 18475--18609 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
18465 GTGCGGCACT
*
18475 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
18538 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
18601 CCCGCACCC
1 CCCGCACCC
18610 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:18567 original size:31 final size:31
Alignment explanation
Indices: 18475--18572 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
18465 GTGCGGCACT
18475 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
18506 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
18538 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
18569 CCCG
1 CCCG
18573 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:18573 original size:190 final size:191
Alignment explanation
Indices: 18232--18598 Score: 512
Period size: 190 Copynumber: 1.9 Consensus size: 191
18222 CCGTCGGGTG
* *
18232 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
18297 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGC
66 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
* * *
18362 CGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 CGAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
18423 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
18486 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-T
65 GGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTT
* * *
18549 GGCCTG-GGGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
128 GGCC-GAGGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGG
18599 ACCCCGCACC
Statistics
Matches: 156, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
190 103 0.66
191 53 0.34
ACGTcount: A:0.13, C:0.35, G:0.36, T:0.17
Consensus pattern (191 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
CGAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:18698 original size:32 final size:32
Alignment explanation
Indices: 18656--18788 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
18646 CCTGGGGTTG
* *
18656 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
18688 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
18720 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
18752 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
18784 CCGAG
1 CCGAG
18789 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:18739 original size:158 final size:159
Alignment explanation
Indices: 18339--18759 Score: 532
Period size: 158 Copynumber: 2.7 Consensus size: 159
18329 CCGATGGTGA
* * * *
18339 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
18404 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
18468 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
18498 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * *
18560 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
18622 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
18656 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
18721 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
18760 ACCCGCCTGG
Statistics
Matches: 221, Mismatches: 31, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
157 32 0.14
158 104 0.47
159 85 0.38
ACGTcount: A:0.13, C:0.34, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:18844 original size:348 final size:348
Alignment explanation
Indices: 18207--18849 Score: 1180
Period size: 348 Copynumber: 1.8 Consensus size: 348
18197 CCAATGGACT
* *
18207 GGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
* * *
18272 TCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGT
66 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
18337 GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
131 GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
18402 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGT
196 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGT
**
18467 GCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACC
261 GCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACC
18532 GAGGCCCCCGCACCCGTGGCCTG
326 GAGGCCCCCGCACCCGTGGCCTG
18555 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
18620 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGG
66 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTC-GGGGTTGCCGATGG
* *
18685 TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
130 TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGT
18750 GACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
195 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
*
18814 TGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
260 TGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
18850 TGGTGACCGA
Statistics
Matches: 284, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
348 186 0.65
349 98 0.35
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.18
Consensus pattern (348 bp):
GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGT
GCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACC
GAGGCCCCCGCACCCGTGGCCTG
Found at i:18912 original size:33 final size:32
Alignment explanation
Indices: 18835--18923 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
18825 CTCACCAATG
*
18835 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
18867 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
18900 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
18924 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:27242 original size:95 final size:94
Alignment explanation
Indices: 27087--27474 Score: 372
Period size: 95 Copynumber: 4.1 Consensus size: 94
27077 TGCGAGGCTG
* ** *
27087 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
27152 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
27182 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
27247 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTC-GGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
27277 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
27339 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
27374 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
27438 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
27467 CCGCACCC
1 CCGCACCC
27475 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 60, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
93 25 0.11
94 12 0.05
95 117 0.53
96 37 0.17
97 30 0.14
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:27272 original size:32 final size:32
Alignment explanation
Indices: 27236--27369 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
27226 CCTGGGGTTG
* * *
27236 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
27268 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
27300 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
27332 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
27365 CCGAG
1 CCGAG
27370 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:27462 original size:31 final size:31
Alignment explanation
Indices: 27427--27529 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
27417 CCTGGGGTTG
27427 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** * *
27458 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCC-GATGG-TGA
27489 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
27520 CCGAGG-ACCC
1 CCGAGGCACCC
27530 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 8 0.15
31 42 0.78
32 4 0.07
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:27480 original size:62 final size:62
Alignment explanation
Indices: 27404--27536 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
27394 GTGCGGCACT
*
27404 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
27466 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
27528 CCCGCACCC
1 CCCGCACCC
27537 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:27561 original size:156 final size:157
Alignment explanation
Indices: 27332--27618 Score: 456
Period size: 156 Copynumber: 1.8 Consensus size: 157
27322 CCAATGGTGA
* *
27332 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
27397 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGA
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
27462 GGCCCCCGCACCCGTGGCCTGGGGTTG
131 GGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
27489 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
27550 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
27615 CGAG
128 CGAG
27619 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
155 24 0.20
156 88 0.73
157 8 0.07
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (157 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:27642 original size:32 final size:32
Alignment explanation
Indices: 27583--27714 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
27573 CCTGGGGTTG
* *
27583 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
27614 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
27646 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
27678 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
27710 CCGAG
1 CCGAG
27715 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:27837 original size:33 final size:31
Alignment explanation
Indices: 27761--27848 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
27751 CTCACCAATG
27761 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
27792 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
27825 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
27849 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:27839 original size:347 final size:343
Alignment explanation
Indices: 27132--27774 Score: 1123
Period size: 346 Copynumber: 1.9 Consensus size: 343
27122 CACCAATGGA
*
27132 CTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTC
1 CTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
* * *
27197 GGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGA
66 GGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGA
27262 TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAAT
131 TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAAT
27327 GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
196 GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
** *
27392 CTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTG
261 CTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGACACCCGTCGGGGTTGCCGATGGTG
27457 ACCGAGGCCCCCGCACCCGTGGC
326 ACCGAGG---CCGCACCC--GGC
27480 CTGGGGTTGCCGAGGCACCCGTCGGG-GTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
1 CTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
27544 GGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTC-GGGGTTGCCGA
66 GGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGA
* *
27608 TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGAT
131 TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAAT
27673 GGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
196 GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
*
27737 CTGTGCGGCACTCCCTCACCAATGGCCT-GGGTTGCCGA
261 CTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
27775 TGGTGACCGA
Statistics
Matches: 286, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
344 10 0.03
345 65 0.23
346 98 0.34
347 87 0.30
348 26 0.09
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (343 bp):
CTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
GGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGA
TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAAT
GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
CTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGACACCCGTCGGGGTTGCCGATGGTG
ACCGAGGCCGCACCCGGC
Found at i:36190 original size:33 final size:32
Alignment explanation
Indices: 36089--36203 Score: 176
Period size: 32 Copynumber: 3.6 Consensus size: 32
36079 ACCCCGGGGG
36089 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
*
36121 TTGCCGATGGTGACCGAGACACCCGTCTGGCT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
* * * *
36153 TTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
36186 TTGCCGATGGTGACCGAG
1 TTGCCGATGGTGACCGAG
36204 CCTCACGCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
32 48 0.64
33 27 0.36
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.20
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGTCTGGGT
Found at i:36295 original size:31 final size:32
Alignment explanation
Indices: 36260--36362 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
36250 CCTGGGGTTG
36260 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** *
36291 CCGAGGCCCCCG-CACCCGTGGCC--TGGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCCGAT-GG-TGA
*
36321 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
36353 CCGAGG-ACCC
1 CCGAGGCACCC
36363 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
29 1 0.02
30 14 0.26
31 30 0.56
32 8 0.15
33 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:36333 original size:61 final size:63
Alignment explanation
Indices: 36237--36369 Score: 243
Period size: 62 Copynumber: 2.1 Consensus size: 63
36227 GTGCGGCACT
*
36237 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
36299 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
36361 CCCGCACCC
1 CCCGCACCC
36370 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
61 20 0.29
62 49 0.71
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:36414 original size:156 final size:155
Alignment explanation
Indices: 36166--36451 Score: 443
Period size: 156 Copynumber: 1.8 Consensus size: 155
36156 CCAATGGTGA
* * *
36166 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGTTCTGTGC
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGCTCTGTCC
* *
36231 GGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAG
66 GGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAG
36296 GCCCCCGCACCCGTGGCCTGGGTTG
131 GCCCCCGCACCCGTGGCCTGGGTTG
* * *
36321 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTC-GCTCT
36383 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
62 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
36448 CGAG
127 CGAG
36452 ACACCCGTCT
Statistics
Matches: 119, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
154 31 0.26
155 16 0.13
156 72 0.61
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (155 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAG
GCCCCCGCACCCGTGGCCTGGGTTG
Found at i:36475 original size:32 final size:32
Alignment explanation
Indices: 36416--36547 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
36406 CCTGGGGTTG
* *
36416 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
36447 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
36479 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
36511 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
36543 CCGAG
1 CCGAG
36548 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:36669 original size:33 final size:31
Alignment explanation
Indices: 36593--36680 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
36583 CTCACCAATG
36593 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
36624 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
36657 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
36681 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:44975 original size:94 final size:93
Alignment explanation
Indices: 44822--45205 Score: 355
Period size: 94 Copynumber: 4.1 Consensus size: 93
44812 TGCGAGGCTG
* ** *
44822 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
44887 GTCGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGA-GCCC
* *
44916 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
44981 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAG-CCC
* ******* * ** ** * *** * * ***
45010 CCTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGCC
1 CCGCACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-C
* *
45072 ACCCGCCTGGGATTGCCGATGGTGACCGAGCCTC
62 ACCCGTC-GGGGTTGCCGATGGTGACCGAGCC-C
*
45106 ACGCA-CCAACGCTC-GTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
45169 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGA-GCCC
45198 CCGCACCC
1 CCGCACCC
45206 GTGGCCTGGG
Statistics
Matches: 218, Mismatches: 60, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
92 25 0.11
93 27 0.12
94 118 0.54
95 23 0.11
96 25 0.11
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (93 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGCCC
Found at i:45005 original size:31 final size:32
Alignment explanation
Indices: 44970--45101 Score: 178
Period size: 31 Copynumber: 4.2 Consensus size: 32
44960 CCTGGGGTTG
* *
44970 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
45001 CCGAGACACCC-TCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
45032 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
45064 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
45097 CCGAG
1 CCGAG
45102 CCTCACGCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
30 2 0.02
31 37 0.42
32 23 0.26
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:45193 original size:31 final size:31
Alignment explanation
Indices: 45158--45260 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
45148 CCTGGGGTTG
45158 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** * *
45189 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCC-GATGG-TGA
45220 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
45251 CCGAGG-ACCC
1 CCGAGGCACCC
45261 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 8 0.15
31 42 0.78
32 4 0.07
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:45211 original size:62 final size:62
Alignment explanation
Indices: 45135--45267 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
45125 GTGCGGCACT
*
45135 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
45197 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
45259 CCCGCACCC
1 CCCGCACCC
45268 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:45232 original size:188 final size:189
Alignment explanation
Indices: 44894--45256 Score: 504
Period size: 188 Copynumber: 1.9 Consensus size: 189
44884 CCCGTCGGTG
* *
44894 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
* *** *
44959 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCC
66 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGCCCCGTTGGCC
* *
45024 GATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 GAGGGTGACCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
45084 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTC-GTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
45146 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCGCACCCG-TGG
65 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGC-CCCGTTGG
* * *
45210 CCTG-GGGTTG-CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGG
129 CC-GAGGG-TGACCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGG
45257 ACCCCGCACC
Statistics
Matches: 154, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
187 20 0.13
188 97 0.63
189 15 0.10
190 22 0.14
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (189 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGCCCCGTTGGCC
GAGGGTGACCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:45303 original size:156 final size:156
Alignment explanation
Indices: 45064--45349 Score: 445
Period size: 156 Copynumber: 1.8 Consensus size: 156
45054 CCAATGGTGA
* *
45064 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGTTCTGTGC
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGCTCTGTCC
* *
45129 GGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAG
66 GGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAG
45194 GCCCCCGCACCCGTGGCCTGGGGTTG
131 GCCCCCGCACCCGTGGCCTGGGGTTG
* * *
45220 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTC-GCTCT
45281 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
62 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
45346 CGAG
127 CGAG
45350 ACACCCGTCT
Statistics
Matches: 119, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
154 24 0.20
155 17 0.14
156 78 0.66
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (156 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAG
GCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:45373 original size:32 final size:32
Alignment explanation
Indices: 45314--45445 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
45304 CCTGGGGTTG
* *
45314 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
45345 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
45377 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
45409 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
45441 CCGAG
1 CCGAG
45446 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:45502 original size:344 final size:344
Alignment explanation
Indices: 44853--45505 Score: 1157
Period size: 344 Copynumber: 1.9 Consensus size: 344
44843 GTGCGGCACT
* *
44853 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGTGTTGCCGATGGTGACCGAGGCCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGACCCC
* * *
44918 GCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGT
66 GCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGT
44983 CGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTG
131 CGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTG
45048 GCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACC
196 GCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACC
**
45113 AACGCTCGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTT
261 AACGCTCGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTT
45178 GCCGATGGTGACCGAGGCC
326 GCCGATGGTGACCGAGGCC
** *
45197 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGACCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGACCCC
45262 GCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGT
66 GCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGT
45327 CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
131 CGGGGTTGCCGATGGTGACCGAGACACCC-TCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
* *
45392 GGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCAC
195 GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
*
45456 CAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCT-GGGTTGCCGA
260 CAACGCTC-GTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
45506 TGGTGACCGA
Statistics
Matches: 294, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
344 197 0.67
345 97 0.33
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (344 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGACCCC
GCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGT
CGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTG
GCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACC
AACGCTCGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTT
GCCGATGGTGACCGAGGCC
Found at i:45568 original size:33 final size:31
Alignment explanation
Indices: 45492--45579 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
45482 CTCACCAATG
45492 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
45523 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
45556 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
45580 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:53929 original size:32 final size:32
Alignment explanation
Indices: 53870--54002 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
53860 GCCTGGGTTG
* *
53870 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
53901 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
53933 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
53965 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
53998 CCGAG
1 CCGAG
54003 CCTCACGCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:53990 original size:65 final size:63
Alignment explanation
Indices: 53870--54002 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
53860 GCCTGGGTTG
* * * * *
53870 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
53933 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
53998 CCGAG
1 CCGAG
54003 CCTCACGCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:54092 original size:32 final size:32
Alignment explanation
Indices: 54056--54160 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
54046 GCCTGGGTTG
54056 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
54088 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
54119 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
54151 CCGAGG-ACCC
1 CCGAGGCACCC
54161 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:54110 original size:62 final size:63
Alignment explanation
Indices: 54034--54167 Score: 252
Period size: 63 Copynumber: 2.1 Consensus size: 63
54024 GTGCGGCACT
*
54034 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
54096 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
54159 CCCGCACCC
1 CCCGCACCC
54168 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 16 0.23
63 54 0.77
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:54131 original size:186 final size:188
Alignment explanation
Indices: 53795--54156 Score: 484
Period size: 186 Copynumber: 1.9 Consensus size: 188
53785 CCGTCGGGTG
*
53795 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGG--CCCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
53860 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCC
64 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
* * *
53925 GATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
129 GAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
* * *
53985 TTGCCGATGGTGACCGA-G-CCTCACGCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGC
1 TTGCCGATGGTGACCGAGGCCCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGC
* *
54048 CTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCC
66 CTGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTTGGCC
* * *
54111 TG-GGGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
129 -GAGGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGG
54157 ACCCCGCACC
Statistics
Matches: 152, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
186 103 0.68
187 31 0.20
189 1 0.01
190 17 0.11
ACGTcount: A:0.12, C:0.35, G:0.36, T:0.17
Consensus pattern (188 bp):
TTGCCGATGGTGACCGAGGCCCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGC
CTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCCGA
GGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:54208 original size:157 final size:154
Alignment explanation
Indices: 53965--54249 Score: 421
Period size: 157 Copynumber: 1.8 Consensus size: 154
53955 CCAATGGTGA
* * * * *
53965 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAACGCTCGGTTCTGTGCGG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCGCACCCAACGCTCGGCTCTGTCCGG
* *
54030 CACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
66 AACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGG
54094 CCCCCGCACCCGTGGCCTGGGGTTG
130 CCCCCGCACCCGTGGCCTGGGGTTG
* * *
54119 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGCTCTGT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G---CCGCACCCAACGCTCGGCTCTGT
54183 CCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCG
62 CCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCG
54248 AG
127 AG
54250 ACACCCGTCT
Statistics
Matches: 116, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
153 27 0.23
154 7 0.06
157 63 0.54
158 19 0.16
ACGTcount: A:0.12, C:0.36, G:0.36, T:0.16
Consensus pattern (154 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCGCACCCAACGCTCGGCTCTGTCCGG
AACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAGGC
CCCCGCACCCGTGGCCTGGGGTTG
Found at i:54273 original size:32 final size:32
Alignment explanation
Indices: 54214--54345 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
54204 CCTGGGGTTG
* *
54214 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
54245 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
54277 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
54309 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
54341 CCGAG
1 CCGAG
54346 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:54470 original size:31 final size:32
Alignment explanation
Indices: 54400--54478 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
54390 TGGCCTGGGG
* *
54400 TTGCCGATGGTGACCGAGACACCCGTATGGTT
1 TTGCCGATGGTGACCGAGACACCCGCATGGTA
* *
54432 TTGCCGATGGTGACCGAGGCCACCC-CCTGG-A
1 TTGCCGATGGTGACCGA-GACACCCGCATGGTA
54463 TTGCCGATGGTGACCG
1 TTGCCGATGGTGACCG
54479 GGCTCACGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
31 16 0.38
32 20 0.48
33 6 0.14
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGCATGGTA
Found at i:62780 original size:95 final size:94
Alignment explanation
Indices: 62625--63009 Score: 361
Period size: 95 Copynumber: 4.1 Consensus size: 94
62615 TGCGAGGCTG
* ** *
62625 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
62690 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
62720 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
62785 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
62814 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
62876 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
62911 ACGCA-CCAACGCTC-GTTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
62973 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
63002 CCGCACCC
1 CCGCACCC
63010 GTGGCCTGGG
Statistics
Matches: 220, Mismatches: 58, Indels: 27
0.72 0.19 0.09
Matches are distributed among these distances:
91 25 0.11
92 12 0.05
93 8 0.04
94 47 0.21
95 95 0.43
96 10 0.05
97 23 0.10
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:62833 original size:32 final size:32
Alignment explanation
Indices: 62774--62906 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
62764 CCTGGGGTTG
* *
62774 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
62805 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
62837 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
62869 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
62902 CCGAG
1 CCGAG
62907 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:62894 original size:65 final size:63
Alignment explanation
Indices: 62774--62906 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
62764 CCTGGGGTTG
* * * * *
62774 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
62837 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
62902 CCGAG
1 CCGAG
62907 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:62997 original size:31 final size:32
Alignment explanation
Indices: 62962--63064 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
62952 GCCTGGGTTG
62962 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** *
62993 CCGAGGCCCCCG-CACCCGTGGCC--TGGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCCGAT-GG-TGA
*
63023 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
63055 CCGAGG-ACCC
1 CCGAGGCACCC
63065 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
29 1 0.02
30 14 0.26
31 30 0.56
32 8 0.15
33 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:63015 original size:61 final size:62
Alignment explanation
Indices: 62940--63071 Score: 248
Period size: 61 Copynumber: 2.1 Consensus size: 62
62930 GTGCGGCACT
*
62940 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
63001 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
63063 CCCGCACCC
1 CCCGCACCC
63072 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 36 0.52
62 33 0.48
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:63029 original size:30 final size:30
Alignment explanation
Indices: 62940--63034 Score: 88
Period size: 30 Copynumber: 3.1 Consensus size: 30
62930 GTGCGGCACT
62940 CCCGCACCCGTGGCCTGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCA
*** * *
62970 CCCGTC-GGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG--GGTTG-CCGAGGCA
63001 CCCGCACCCGTGGCCTGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCA
63031 CCCG
1 CCCG
63035 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 10, Indels: 14
0.67 0.14 0.19
Matches are distributed among these distances:
29 1 0.02
30 25 0.52
31 21 0.44
32 1 0.02
ACGTcount: A:0.09, C:0.39, G:0.38, T:0.14
Consensus pattern (30 bp):
CCCGCACCCGTGGCCTGGGTTGCCGAGGCA
Found at i:63160 original size:32 final size:32
Alignment explanation
Indices: 63118--63249 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
63108 CCTGGGGTTG
* *
63118 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
63150 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
63182 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
63214 CCGAGGCCACCCGCCT--GGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
63245 CCGAG
1 CCGAG
63250 CCTCACGCAC
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
30 1 0.01
31 18 0.19
32 65 0.70
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:63284 original size:344 final size:346
Alignment explanation
Indices: 62673--63311 Score: 1142
Period size: 344 Copynumber: 1.9 Consensus size: 346
62663 CAATGGACTG
* *
62673 GGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
* * *
62738 TCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGT
66 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
62803 GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
131 GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
62868 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGTTCTGTG
196 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGTTCTGTG
**
62933 CGGCACTCCCGCACCCGTGGCCT-GGG-TTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCG
261 CGGCACTCCCGCACCAATGGCCTGGGGTTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCG
62996 AGGCCCCCGCACCCGTGGCCT
326 AGGCCCCCGCACCCGTGGCCT
63017 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
63082 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGG
66 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTC-GGGGTTGCCGATGG
* *
63147 TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
130 TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGT
63212 GACCGAGGCCACCCGCCT-GG-TTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
195 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTC-GTTCTG
*
63275 TGCGGCACTCCCTCACCAATGGCCTGGGGTTTGCCGA
259 TGCGGCACTCCCGCACCAATGGCCTGGGGTTTGCCGA
63312 TGGTGACCGA
Statistics
Matches: 281, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
343 36 0.13
344 140 0.50
345 98 0.35
346 7 0.02
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (346 bp):
GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGT
GACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTG
ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGTTCTGTG
CGGCACTCCCGCACCAATGGCCTGGGGTTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCT
Found at i:63342 original size:32 final size:32
Alignment explanation
Indices: 63302--63384 Score: 114
Period size: 32 Copynumber: 2.6 Consensus size: 32
63292 AATGGCCTGG
*
63302 GGTTTGCCGATGGTGACCGA-GACACCCGTAT
1 GGTTTGCCGATGGTGACCGAGGACACCCGCAT
* *
63333 GGTTTTGCCGATGGTGACCGAGGCCACCCGCCT
1 GG-TTTGCCGATGGTGACCGAGGACACCCGCAT
*
63366 GGATTGCCGATGGTGACCG
1 GGTTTGCCGATGGTGACCG
63385 GGCTCACGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
31 2 0.04
32 34 0.74
33 10 0.22
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.22
Consensus pattern (32 bp):
GGTTTGCCGATGGTGACCGAGGACACCCGCAT
Done.