genome.fa.s762.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000762.1 Hibiscus syriacus cultivar Beakdansim tig00001479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54194

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63--96	3	11.7	3	93	6	61	35	0	0	64	0.94
5746--5771	2	13.0	2	100	0	52	50	0	0	50	1.00
5822--5858	19	1.9	19	88	0	56	29	10	16	43	1.82
8172--8209	20	1.9	20	84	10	51	50	2	0	47	1.15
8428--8484	14	4.2	14	76	14	57	57	0	0	42	0.98
11924--12210	57	5.2	57	85	4	365	34	11	19	33	1.88
11924--12176	114	2.2	114	92	2	420	35	11	18	34	1.87
12495--12908	227	1.8	224	85	9	579	30	12	17	39	1.87
13996--14060	3	21.0	3	82	6	76	40	1	0	58	1.07
15219--15297	40	2.0	40	82	9	99	29	1	2	67	1.12
15252--15299	14	3.3	15	77	19	57	31	0	0	68	0.90
15247--15326	14	6.1	13	70	21	51	28	1	2	67	1.11
15306--15351	3	15.3	3	82	8	58	26	4	0	69	1.07
15306--15354	19	2.5	19	81	15	64	26	4	0	69	1.06
15446--15666	116	1.9	114	83	5	284	37	7	8	46	1.62
15631--15694	31	2.2	30	78	13	71	50	1	0	48	1.10
16164--16207	17	2.6	16	86	10	61	27	2	0	70	0.99
21275--21304	11	2.8	11	95	5	53	86	0	13	0	0.57
21263--21316	27	2.0	27	81	0	63	81	3	14	0	0.82
23462--23681	114	1.9	114	88	3	336	33	15	20	30	1.93
25531--25606	40	1.9	40	100	0	152	32	11	23	31	1.91
26012--26063	22	2.4	22	90	0	77	38	11	15	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26450--27121	113	5.9	114	92	4	1118	41	14	17	27	1.88
27060--27161	40	2.5	40	92	3	161	52	7	21	17	1.69
27100--27959	114	7.5	114	92	1	1393	40	13	18	27	1.89
27098--27959	342	2.5	342	95	0	1539	40	13	18	27	1.89
27440--28608	496	2.4	496	97	0	2230	40	13	18	26	1.88
27898--27999	40	2.5	40	93	3	170	52	7	20	18	1.69
27782--28114	154	2.2	155	89	2	501	42	12	19	24	1.86
26450--28455	838	2.4	837	94	1	3577	40	14	17	27	1.88
27938--28455	114	4.5	114	93	1	835	41	13	18	27	1.87
27098--27959	227	3.8	227	91	1	1395	40	13	18	27	1.89
27938--28455	227	2.3	228	92	2	844	41	13	18	27	1.87
28394--28495	40	2.5	40	92	3	161	52	7	20	18	1.69
28553--28648	41	2.4	41	91	1	149	51	9	20	18	1.74
28278--28767	156	3.2	155	92	1	786	43	12	19	25	1.85
28594--28893	114	2.6	112	87	3	395	39	14	19	27	1.90
28941--28995	17	3.1	17	70	27	51	49	14	20	16	1.80
29214--29286	3	24.0	3	79	8	58	42	2	0	54	1.14
30463--30510	14	3.3	15	77	19	57	31	0	0	68	0.90
30517--30562	3	15.3	3	82	8	58	26	4	0	69	1.07
30517--30565	19	2.5	19	81	15	64	26	4	0	69	1.06
30661--30877	116	1.9	114	81	8	262	37	7	8	46	1.62
36781--36822	20	2.2	20	82	4	50	33	16	23	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37153--37645	57	8.8	56	84	4	532	36	9	18	34	1.84
37166--37645	171	2.8	171	85	4	600	36	10	18	35	1.85
39906--39960	28	2.0	28	82	13	69	14	9	10	65	1.47
41301--41638	169	2.0	170	92	0	570	31	16	20	31	1.95
42698--42732	16	2.2	16	100	0	70	28	28	25	17	1.97
45906--46099	97	2.0	97	96	0	361	36	19	12	30	1.90
51900--51932	14	2.4	14	90	10	50	78	0	9	12	0.95
51902--51946	18	2.4	18	85	3	54	75	0	11	13	1.05
52056--52094	13	3.1	13	85	7	53	79	0	2	17	0.84
52056--52094	6	6.3	6	82	5	51	79	0	2	17	0.84

Tables:   1

The End!