genome.fa.s7622.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007622.1 Hibiscus syriacus cultivar Beakdansim tig00023068_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55702

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2046--2085	20	2.0	21	90	5	64	30	37	15	17	1.90
2078--2123	14	3.3	14	82	11	58	30	28	10	30	1.91
2125--2168	14	3.2	14	87	3	63	20	29	15	34	1.94
4096--4221	67	1.9	66	88	1	189	22	18	21	38	1.94
12811--12838	7	4.0	7	100	0	56	14	14	14	57	1.66
13838--13892	25	2.2	25	96	0	101	32	23	18	25	1.97
14401--14447	23	2.0	24	91	4	78	38	34	0	27	1.57
14444--14477	17	2.0	17	94	0	59	35	38	0	26	1.57
14554--14596	21	2.2	19	87	8	59	25	16	0	58	1.38
14934--14968	9	3.9	9	96	0	61	74	2	22	0	0.95
14926--14976	18	2.9	17	85	8	66	74	1	19	3	1.07
18912--18949	17	2.2	18	86	9	53	52	2	18	26	1.58
21202--21244	16	2.7	16	92	0	68	48	30	2	18	1.60
25014--25177	46	3.6	46	92	1	267	43	9	24	22	1.83
25014--25243	26	9.8	25	67	20	131	44	10	23	21	1.82
25092--25249	72	2.2	72	90	0	253	44	10	24	21	1.83
25048--25281	118	2.0	118	93	1	398	44	9	23	21	1.82
25169--25281	46	2.5	46	97	0	208	46	10	23	20	1.81
25664--25918	81	3.1	81	93	0	429	37	14	21	27	1.92
25664--25969	81	3.8	79	86	5	335	36	14	21	27	1.92
28117--28145	2	14.5	2	100	0	58	51	0	0	48	1.00
30042--30134	42	2.2	41	83	5	107	37	13	22	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30567--30729	46	3.6	46	86	0	220	46	10	21	21	1.81
30622--30688	12	5.8	12	68	25	54	46	8	19	25	1.79
30625--30663	20	1.9	21	94	5	71	46	12	17	23	1.83
30567--30735	91	1.8	93	87	2	252	47	10	20	21	1.80
30567--31075	26	21.9	26	67	22	285	46	10	22	21	1.81
30649--30801	72	2.1	72	91	0	243	45	10	24	20	1.82
30718--31155	46	9.5	46	89	0	642	45	9	22	21	1.81
30567--30893	164	2.0	163	89	1	503	45	10	22	21	1.82
31487--31660	81	2.1	81	88	0	258	37	15	19	27	1.92
31495--31686	81	2.4	81	85	0	213	36	15	19	28	1.93
31808--31842	2	17.5	2	100	0	70	51	0	0	48	1.00
37760--37876	59	2.0	59	91	0	189	31	18	20	29	1.97
38398--38842	134	3.3	133	80	3	475	34	22	13	28	1.93
39656--39705	20	2.5	20	96	0	91	16	4	30	50	1.63
41057--41389	131	2.5	132	82	3	368	32	11	15	41	1.82
41742--41779	18	2.1	18	85	9	51	52	0	5	42	1.24
42570--42612	17	2.5	17	100	0	86	34	0	32	32	1.58
45175--45221	21	2.3	21	96	3	87	34	17	8	40	1.79
48638--48677	20	2.0	21	90	5	64	30	37	15	17	1.90
48670--48719	14	3.6	14	84	10	66	32	30	10	28	1.89
48717--48761	14	3.2	14	90	0	72	20	28	15	35	1.93
48753--48794	21	2.0	21	86	4	59	40	19	14	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50671--50776	31	3.3	31	65	25	74	18	16	24	40	1.90
50672--50798	67	1.9	67	88	0	191	22	18	21	38	1.93
51895--51925	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1

The End!