Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007623.1 Hibiscus syriacus cultivar Beakdansim tig00023094_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49968
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Found at i:6639 original size:32 final size:32
Alignment explanation
Indices: 6580--6712 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
6570 GCCTGGGTTG
* *
6580 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
6611 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
6643 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
6675 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
6708 CCGAG
1 CCGAG
6713 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:6700 original size:65 final size:63
Alignment explanation
Indices: 6580--6712 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
6570 GCCTGGGTTG
* * * * *
6580 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
6643 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
6708 CCGAG
1 CCGAG
6713 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:6805 original size:31 final size:32
Alignment explanation
Indices: 6770--6873 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
6760 CCTGGGGTTG
6770 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
6801 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
6832 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
6864 CCGAGG-ACCC
1 CCGAGGCACCC
6874 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:6823 original size:62 final size:63
Alignment explanation
Indices: 6747--6880 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
6737 GTGCGGCACT
*
6747 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
6809 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
6872 CCCGCACCC
1 CCCGCACCC
6881 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:6863 original size:189 final size:190
Alignment explanation
Indices: 6505--6869 Score: 508
Period size: 189 Copynumber: 1.9 Consensus size: 190
6495 CCGTCGGGTG
* *
6505 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
6570 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCC
66 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
* * *
6635 GATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 GAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
6695 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
6758 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TG
65 GGCCT-GGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTTG
* * *
6821 GCCTG-GGGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
128 GCC-GAGGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGG
6870 ACCCCGCACC
Statistics
Matches: 155, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
189 82 0.53
190 73 0.47
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (190 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
GAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:6986 original size:32 final size:32
Alignment explanation
Indices: 6927--7058 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
6917 CCTGGGGTTG
* *
6927 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
6958 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
6990 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
7022 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
7054 CCGAG
1 CCGAG
7059 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:7009 original size:157 final size:158
Alignment explanation
Indices: 6611--7029 Score: 528
Period size: 157 Copynumber: 2.7 Consensus size: 158
6601 CCGATGGTGA
* * *
6611 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
6676 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
65 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
6740 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
129 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
6770 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTTG
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-TG
* * * *
6832 -CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
63 ACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTCT
6894 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
6927 CCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
*
6992 GAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
7030 ACCCGCCTGG
Statistics
Matches: 220, Mismatches: 30, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
156 32 0.15
157 103 0.47
158 72 0.33
159 13 0.06
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (158 bp):
CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCCG
GAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:7109 original size:346 final size:346
Alignment explanation
Indices: 6463--7119 Score: 1181
Period size: 346 Copynumber: 1.9 Consensus size: 346
6453 GTGCGGCACT
* *
6463 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
* * *
6528 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGT
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGT
6593 CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
131 CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
6658 GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
196 GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
**
6723 CAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGG
261 CAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGG
6788 TTGCCGATGGTGACCGAGGCC
326 TTGCCGATGGTGACCGAGGCC
** *
6809 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
6874 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCT-GGGTTGCCGAGCCACCCG
6939 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
130 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
* *
7004 TGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCA
195 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
*
7068 CCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
260 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
7120 TGGTGACCGA
Statistics
Matches: 297, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
346 180 0.61
347 117 0.39
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (346 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGT
CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
CAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGG
TTGCCGATGGTGACCGAGGCC
Found at i:7182 original size:33 final size:32
Alignment explanation
Indices: 7105--7193 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
7095 CTCACCAATG
*
7105 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
7137 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
7170 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
7194 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:15539 original size:95 final size:94
Alignment explanation
Indices: 15384--15771 Score: 372
Period size: 95 Copynumber: 4.1 Consensus size: 94
15374 TGCGAGGCTG
* ** *
15384 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
15449 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
15479 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
15544 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTC-GGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
15574 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
15636 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
15671 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
15735 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
15764 CCGCACCC
1 CCGCACCC
15772 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 60, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
93 25 0.11
94 12 0.05
95 117 0.53
96 37 0.17
97 30 0.14
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:15569 original size:32 final size:32
Alignment explanation
Indices: 15533--15666 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
15523 CCTGGGGTTG
* * *
15533 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
15565 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
15597 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
15629 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
15662 CCGAG
1 CCGAG
15667 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:15759 original size:31 final size:31
Alignment explanation
Indices: 15724--15825 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
15714 CCTGGGGTTG
15724 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** *
15755 CCGAGGCCCCCG-CACCCGTGGCC--TGGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCCGAT-GG-TGA
15785 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
15816 CCGAGG-ACCC
1 CCGAGGCACCC
15826 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
29 1 0.02
30 25 0.46
31 27 0.50
32 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.39, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:15797 original size:61 final size:62
Alignment explanation
Indices: 15701--15832 Score: 248
Period size: 61 Copynumber: 2.1 Consensus size: 62
15691 GTGCGGCACT
*
15701 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
15763 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
15824 CCCGCACCC
1 CCCGCACCC
15833 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 53 0.77
62 16 0.23
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:15857 original size:155 final size:157
Alignment explanation
Indices: 15629--15915 Score: 449
Period size: 155 Copynumber: 1.8 Consensus size: 157
15619 CCAATGGTGA
* *
15629 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
15694 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
15758 AGGCCCCCGCACCCGTGGCCTGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGTTG
* * *
15785 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
15846 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
15911 CCGAG
128 CCGAG
15916 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
154 24 0.20
155 66 0.55
156 30 0.25
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (157 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGTTG
Found at i:15921 original size:32 final size:32
Alignment explanation
Indices: 15879--16011 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
15869 CCTGGGGTTG
* *
15879 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
15911 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
15943 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
15975 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
16007 CCGAG
1 CCGAG
16012 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:16135 original size:33 final size:32
Alignment explanation
Indices: 16058--16146 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
16048 CTCACCAATG
*
16058 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
16090 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
16123 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
16147 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:24485 original size:95 final size:94
Alignment explanation
Indices: 24330--24716 Score: 379
Period size: 95 Copynumber: 4.1 Consensus size: 94
24320 TGCGAGGCTG
* ** *
24330 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
24395 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
24425 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
24490 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
24519 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
24581 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
24616 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
24680 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
24709 CCGCACCC
1 CCGCACCC
24717 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 59, Indels: 25
0.72 0.19 0.08
Matches are distributed among these distances:
93 25 0.11
94 50 0.23
95 99 0.45
96 24 0.11
97 23 0.10
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:24538 original size:32 final size:32
Alignment explanation
Indices: 24479--24611 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
24469 CCTGGGGTTG
* *
24479 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
24510 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
24542 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
24574 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
24607 CCGAG
1 CCGAG
24612 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:24599 original size:65 final size:63
Alignment explanation
Indices: 24479--24611 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
24469 CCTGGGGTTG
* * * * *
24479 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
24542 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
24607 CCGAG
1 CCGAG
24612 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:24704 original size:31 final size:31
Alignment explanation
Indices: 24669--24771 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
24659 CCTGGGGTTG
24669 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** * *
24700 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCC-GATGG-TGA
24731 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
24762 CCGAGG-ACCC
1 CCGAGGCACCC
24772 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 8 0.15
31 42 0.78
32 4 0.07
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:24722 original size:62 final size:62
Alignment explanation
Indices: 24646--24778 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
24636 GTGCGGCACT
*
24646 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
24708 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
24770 CCCGCACCC
1 CCCGCACCC
24779 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:24803 original size:156 final size:158
Alignment explanation
Indices: 24574--24861 Score: 451
Period size: 156 Copynumber: 1.8 Consensus size: 158
24564 CCAATGGTGA
* *
24574 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
24639 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
24703 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
24731 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
24792 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
24857 CCGAG
128 CCGAG
24862 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
155 24 0.20
156 66 0.55
157 30 0.25
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:24867 original size:32 final size:32
Alignment explanation
Indices: 24825--24957 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
24815 CCTGGGGTTG
* *
24825 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
24857 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
24889 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
24921 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
24953 CCGAG
1 CCGAG
24958 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:24944 original size:64 final size:65
Alignment explanation
Indices: 24825--25091 Score: 217
Period size: 64 Copynumber: 4.0 Consensus size: 65
24815 CCTGGGGTTG
* * * * * *
24825 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
24889 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
* * **** ***
24953 CCGAGCCTCACGCACCAACG-CTCGG-TT-CTG-TGCG-GCACTCCCTCACCAATGGCCTGGG-T
1 CCGAG----A--CACC--CGTCTGGGTTTGCCGATG-GTG-A--CCGAGGCCACCCGCCTGGGAT
25012 TGCCGATGGTGA
54 TGCCGATGGTGA
* *
25024 CCGAGACACCCGTATGGTTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
25089 CCG
1 CCG
25092 GGGCTCACGC
Statistics
Matches: 159, Mismatches: 25, Indels: 37
0.72 0.11 0.17
Matches are distributed among these distances:
63 2 0.01
64 65 0.41
65 34 0.21
66 4 0.03
67 4 0.03
68 4 0.03
69 4 0.03
70 6 0.04
71 34 0.21
72 2 0.01
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (65 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
Found at i:25008 original size:346 final size:346
Alignment explanation
Indices: 24361--25017 Score: 1174
Period size: 346 Copynumber: 1.9 Consensus size: 346
24351 GTGCGGCACT
*
24361 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
* * *
24426 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
24491 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
131 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
24556 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
196 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
**
24621 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG
261 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCT-GGGTTGCCGAGGCACCCGTCGGG
24686 GTTGCCGATGGTGACCGAGGCC
325 GTTGCCGATGGTGACCGAGGCC
** *
24708 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG-GTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
24772 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
24837 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
131 TC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
* *
24902 CTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGC
195 CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
*
24966 ACCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGTTGCCGA
260 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGA
25018 TGGTGACCGA
Statistics
Matches: 297, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
345 10 0.03
346 152 0.51
347 135 0.45
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (346 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGAGGCACCCGTCGGGG
TTGCCGATGGTGACCGAGGCC
Found at i:25080 original size:33 final size:31
Alignment explanation
Indices: 25004--25091 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
24994 CTCACCAATG
25004 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
25035 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
25068 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
25092 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:33437 original size:95 final size:94
Alignment explanation
Indices: 33282--33668 Score: 363
Period size: 95 Copynumber: 4.1 Consensus size: 94
33272 TGCGAGGCTG
* ** *
33282 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
33347 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
33377 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
33442 GTC-GGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
33470 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
33532 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
33567 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
33631 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTC-GGGGTTGCCGATGGTGACCGAGGCCC
33661 CCGCACCC
1 CCGCACCC
33669 GTGGCCTGGG
Statistics
Matches: 219, Mismatches: 60, Indels: 26
0.72 0.20 0.09
Matches are distributed among these distances:
93 38 0.17
94 51 0.23
95 91 0.42
96 17 0.08
97 22 0.10
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:33489 original size:32 final size:32
Alignment explanation
Indices: 33431--33562 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
33421 CCTGGGGTTG
*
33431 CCGAGGCACCCGTC-GGG-TTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
33461 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
33493 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
33525 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
33558 CCGAG
1 CCGAG
33563 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
30 13 0.14
31 3 0.03
32 48 0.53
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:33550 original size:65 final size:62
Alignment explanation
Indices: 33431--33562 Score: 183
Period size: 65 Copynumber: 2.1 Consensus size: 62
33421 CCTGGGGTTG
* * * *
33431 CCGAGGCACCCGTCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
33493 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GG-GTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
33558 CCGAG
1 CCGAG
33563 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
62 13 0.21
63 2 0.03
64 16 0.26
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (62 bp):
CCGAGACACCCGTCGGGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:33656 original size:32 final size:32
Alignment explanation
Indices: 33620--33724 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
33610 CCTGGGGTTG
33620 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
33652 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
33683 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
33715 CCGAGG-ACCC
1 CCGAGGCACCC
33725 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:33675 original size:63 final size:63
Alignment explanation
Indices: 33597--33731 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
33587 GTGCGGCACT
*
33597 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
33660 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
33723 CCCGCACCC
1 CCCGCACCC
33732 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:33689 original size:31 final size:31
Alignment explanation
Indices: 33597--33694 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
33587 GTGCGGCACT
33597 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
33628 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
33660 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
33691 CCCG
1 CCCG
33695 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:33837 original size:32 final size:32
Alignment explanation
Indices: 33778--33909 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
33768 CCTGGGGTTG
* *
33778 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
33809 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
33841 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
33873 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
33905 CCGAG
1 CCGAG
33910 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:33845 original size:158 final size:159
Alignment explanation
Indices: 33461--33880 Score: 532
Period size: 158 Copynumber: 2.7 Consensus size: 159
33451 CCGATGGTGA
* * * *
33461 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * *
33526 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGAGG-CACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
33590 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
33620 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * *
33682 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
33744 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
33778 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* *
33842 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
33881 ACCCGCCTGG
Statistics
Matches: 221, Mismatches: 30, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
157 64 0.29
158 114 0.52
159 43 0.19
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:33919 original size:158 final size:156
Alignment explanation
Indices: 33461--34044 Score: 459
Period size: 158 Copynumber: 3.6 Consensus size: 156
33451 CCGATGGTGA
* * * *
33461 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *
33526 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG-
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC-CACCCACCAAAGTTCGG--ATGTGC
33590 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGC-CTCCCGCACCCGTGGCCTGGGGTTG
* * * * *** * *
33620 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * * * * *
33682 G-CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-CCGCACCCAACTCTCGGCTC
63 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG-CCACC-CACCAAAGT-TCGGATG
*
33744 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
125 TG-CCGG-CCTCCCGCACCCGTGGCCTGGGGTTG
33778 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *** *
33842 CGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGTTGCCGATGGTGAC
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTT-CGGAT-GTG-C
* * * *
33906 CGAGCCTCACGCACCAACGCTCGGTTCTGTGCGGCACTC
128 CG-GCCTCCCGCACC--CG-T-GG-CCTG-G-GG--TTG
* *** * * *
33945 CCTCA-CCAATGGCCTGGGGTTGCCGATGGTGACCGAGACACCCGTATGGTTTTGCCGATGGTGA
1 CC-GAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
34009 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
65 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
34045 GGCTCACGCA
Statistics
Matches: 338, Mismatches: 57, Indels: 50
0.76 0.13 0.11
Matches are distributed among these distances:
156 6 0.02
157 75 0.22
158 116 0.34
159 42 0.12
160 2 0.01
161 1 0.00
162 2 0.01
163 3 0.01
164 1 0.00
165 2 0.01
167 8 0.02
168 52 0.15
169 28 0.08
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (156 bp):
CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTTCGGATGTGCCGG
CCTCCCGCACCCGTGGCCTGGGGTTG
Found at i:33960 original size:347 final size:347
Alignment explanation
Indices: 33313--33970 Score: 1183
Period size: 347 Copynumber: 1.9 Consensus size: 347
33303 GTGCGGCACT
* *
33313 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
* * *
33378 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
33443 TCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
131 TCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
33508 GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
196 GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
**
33573 CAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGG
261 CAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGG
33638 GTTGCCGATGGTGACCGAGGCC
326 GTTGCCGATGGTGACCGAGGCC
** *
33660 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
33725 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
33790 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
131 TC-GGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
* *
33855 TGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCA
195 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
*
33919 CCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
260 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
33971 TGGTGACCGA
Statistics
Matches: 297, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
347 200 0.67
348 97 0.33
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (347 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
TCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
CAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGG
GTTGCCGATGGTGACCGAGGCC
Found at i:34033 original size:33 final size:32
Alignment explanation
Indices: 33956--34044 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
33946 CTCACCAATG
*
33956 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
33988 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
34021 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
34045 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:42380 original size:95 final size:94
Alignment explanation
Indices: 42225--42611 Score: 379
Period size: 95 Copynumber: 4.1 Consensus size: 94
42215 TGCGAGGCTG
* ** *
42225 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
42290 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
42320 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
42385 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
42414 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
42476 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
42511 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
42575 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
42604 CCGCACCC
1 CCGCACCC
42612 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 59, Indels: 25
0.72 0.19 0.08
Matches are distributed among these distances:
93 25 0.11
94 50 0.23
95 99 0.45
96 24 0.11
97 23 0.10
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:42433 original size:32 final size:32
Alignment explanation
Indices: 42374--42506 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
42364 CCTGGGGTTG
* *
42374 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
42405 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
42437 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
42469 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
42502 CCGAG
1 CCGAG
42507 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:42494 original size:65 final size:63
Alignment explanation
Indices: 42374--42506 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
42364 CCTGGGGTTG
* * * * *
42374 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
42437 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
42502 CCGAG
1 CCGAG
42507 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:42599 original size:31 final size:31
Alignment explanation
Indices: 42564--42665 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
42554 CCTGGGGTTG
42564 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** *
42595 CCGAGGCCCCCG-CACCCGTGGCC--TGGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCCGAT-GG-TGA
42625 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
42656 CCGAGG-ACCC
1 CCGAGGCACCC
42666 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
29 1 0.02
30 25 0.46
31 27 0.50
32 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.39, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:42637 original size:61 final size:62
Alignment explanation
Indices: 42541--42672 Score: 248
Period size: 61 Copynumber: 2.1 Consensus size: 62
42531 GTGCGGCACT
*
42541 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
42603 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
42664 CCCGCACCC
1 CCCGCACCC
42673 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 53 0.77
62 16 0.23
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:42697 original size:155 final size:156
Alignment explanation
Indices: 42469--42754 Score: 454
Period size: 155 Copynumber: 1.8 Consensus size: 156
42459 CCAATGGTGA
* *
42469 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
42534 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGA
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
42599 GGCCCCCGCACCCGTGGCCTGGGTTG
131 GGCCCCCGCACCCGTGGCCTGGGTTG
* * *
42625 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
42686 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
42751 CGAG
128 CGAG
42755 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
154 24 0.20
155 88 0.73
156 8 0.07
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (156 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGCCTGGGTTG
Found at i:42778 original size:32 final size:32
Alignment explanation
Indices: 42719--42850 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
42709 CCTGGGGTTG
* *
42719 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
42750 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
42782 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
42814 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
42846 CCGAG
1 CCGAG
42851 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:42973 original size:33 final size:31
Alignment explanation
Indices: 42897--42984 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
42887 CTCACCAATG
42897 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
42928 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
42961 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
42985 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Done.