Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007625.1 Hibiscus syriacus cultivar Beakdansim tig00023111_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41160
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Found at i:4747 original size:3 final size:3
Alignment explanation
Indices: 4739--4765 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
4729 ATCAAGAATA
4739 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
4766 AAATTAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7572 original size:12 final size:12
Alignment explanation
Indices: 7546--7578 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7536 TTATTATACT
*
7546 ATTTT-ATTAAC
1 ATTTTAATTAAA
7557 ATTTTAATTAAA
1 ATTTTAATTAAA
7569 ATTTTAATTA
1 ATTTTAATTA
7579 TTAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTTTAATTAAA
Found at i:11042 original size:805 final size:781
Alignment explanation
Indices: 9511--11088 Score: 2689
Period size: 805 Copynumber: 2.0 Consensus size: 781
9501 ATATTATACA
9511 AAAGACATCTTATTCAACTCACAGTCAACCAATAAAGTTCAACATTATAAAATCCGTTAATCTCA
1 AAAGACATCTTATTCAACTCACAGTCAACCAATAAAGTTCAACATTATAAAATCCGTTAATCTCA
* *
9576 TTTCCATGATTGGATGTTGTCAAAGAGCTTCTTCGATATAAAGTTTTGAGAAATAATTAACGTAA
66 TTGCCATGATTGGATGTTGTCAAAGAGCTTCTTCAATATAAAGTTTTGAGAAATAATTAACGTAA
*
9641 TTTTGCGGAATGTTATAAAGGCTTTGATTTACTATAAGTTTATAGGAAAAAAAATAGAGTTCTAT
131 TTTTGCGGAATGTTATAAAAGCTTTGATTTACTATAAGTTTATAGGAAAAAAAATAGAGTTCTAT
9706 CAATTTGCTGAAGAAACTAGAGGTTTTGATCATCAATTTAATAAAAGACTCTTACAATCAAGCTC
196 CAATTTGCTGAAGAAACTAGAGGTTTTGATCATCAATTTAATAAAAGACTCTTACAATCAAGCTC
* *
9771 AGTGTTGCCAAAATGGGTTGACTGTGACAGATGTTTGTCTTTATCCAAACGAACAATTTTTCAAT
261 AATGTTGCCAAAATGGGTTGACTATGACAGATGTTTGTCTTTATCCAAACGAACAATTTTTCAAT
9836 TTTTAAATGAAGCTATGGTCATTCAAAAGCACTATTTATCATTTAAATTATATTAAAAGTATAGA
326 TTTTAAATGAAGCTATGGTCATTCAAAA-CACTATTTATCATTTAAATTATATTAAAAGTATAGA
9901 TTACTAATTTTTTAAATAAGTTCTAATCAAATAATTTTAAACTATAAAAATTTAAGTTATAATCA
390 TTACTAATTTTTTAAATAAGTTCTAATCAAATAATTTTAAACTATAAAAATTTAAGTTATAATCA
*
9966 CGAAAACTTTTTCTAAGGAATGATTGTATGTTAAAACTCAATAGTTTTTTATGTCCTTAACTTTT
455 CGAAAACTTTTTCTAAGGAATGATTGTATGTTAAAACTCAATAGCTTTTTATGTCCTTAACTTTT
10031 GAATAAAATAATACAGTCTTTTAACTTTTTTTCCACTCCATGAAGCCTCAAATCATAAAATAAAT
520 GAATAAAATAATACAGTCTTTTAAC-TTTTTTCCACTCCATGAAGCCTCAAATCATAAAATAAAT
*
10096 CAAGACAACTCTTTGATTAAAGGAAACCATCATTGATCTTGTTTTGCTAATGTGGTAGCCCATAA
584 CAAGACAACTCTTTGATTAAAGGAAACCATCATTGATCTTGTTATGCTAATGTGGTAGCCCATAA
10161 AGCTTACATGGTAGCTCATTGTACTTATGTGGCTGGCACGTGTGAATGATAATGTGGAAAAGGGG
649 AGCTTACATGGTAGCTCATTGTACTTATGTGGCTGGCACGTGTGAATGATAATGTGGAAAAGGGG
10226 TGTAATTGATTCTTTTTTGAGTTAGTTGTCATAATTTATATTTTAGAAAGTTTGAGTAATAGGAT
714 TGTAATTGATTCTTTTTTGAGTTAGTTGTCATAA-TT-TATTTTAGAAAGTTTGAGTAATAGGAT
10291 TTATG
777 TTATG
10296 AAAGACATCTTATTCAACTCACAGTCAACCAATAAAGTTCAACATTATAAAAAATCCGTTAATCT
1 AAAGACATCTTATTCAACTCACAGTCAACCAATAAAGTTCAACATTAT--AAAATCCGTTAATCT
10361 CATTGCCATTGATTGGATGTTGTCAAAGAGCTTCTTCAATATAAAGTTTTTGAGAAAATAATTAA
64 CATTGCCA-TGATTGGATGTTGTCAAAGAGCTTCTTCAATATAAAG-TTTTGAG-AAATAATTAA
10426 CGTAA-TTTGCGGAATGTTATTAAGGCATCCAGCTTTGATTTACTATAAGTTTATAGG-AAAAAA
126 CGTAATTTTGCGGAATGTTA-TAA---A---AGCTTTGATTTACTATAAGTTTATAGGAAAAAAA
*
10489 ATAGAGTTCTATCAAATTTGCTGAAGAAACTAGAGG-TTTGATCATCAATTTAATAAAAGATTCT
184 ATAGAGTTCTATC-AATTTGCTGAAGAAACTAGAGGTTTTGATCATCAATTTAATAAAAGACTCT
* * * *
10553 TACAATCAAGCTCAATGTTGCCAAAGTGGGTTGACTATGATAGATGTTTTTCTTTTGTCCAAAAA
248 TACAATCAAGCTCAATGTTGCCAAAATGGGTTGACTATGACAGATGTTTGTC-TTTATCC--AAA
* * *
10618 CGAACATATTTTTCAATTTTTAAATGAAGCTCTGGTCATTCAAAA-ACTATTTGTCATTTAAGTT
310 CGAACA-ATTTTTCAATTTTTAAATGAAGCTATGGTCATTCAAAACACTATTTATCATTTAAATT
10682 ATATTAAAAGTATAGATTACTAATTTTTTAAATAAGTTCTAATCAAATAATTTTAAACTATTAAT
374 ATATTAAAAGTATAGATTACTAATTTTTTAAATAAGTTCTAATCAAATAATTTTAAACTA-T-A-
10747 AAAATTTAAGTTATAGGATCACGAAAACTTTTTCTAAGGAATGATTGTTATGTTAAAACTCAATA
436 AAAATTTAAGTTATA--ATCACGAAAACTTTTTCTAAGGAATGATTG-TATGTTAAAACTCAATA
10812 GCTTTTTATGTCCTTAAACTTTTGAATAAAATAAATACAGTCTTTTAAC-TTTTTCCACTCCATG
498 GCTTTTTATGTCCTT-AACTTTTGAATAAAAT-AATACAGTCTTTTAACTTTTTTCCACTCCATG
* *
10876 AAGCCCTCAAATCATAAAATAAATCAAGGCAGCTCTTTGATTAAAGGAAACCATCATTGATCTTT
561 AAG-CCTCAAATCATAAAATAAATCAAGACAACTCTTTGATTAAAGGAAACCATCATTGATC-TT
10941 GTTATGCTAATGTGGTAGCCCATAAAGCTTACATGGTAGCTCATTGTACTTATGTGGCTGGCACG
624 GTTATGCTAATGTGGTAGCCCATAAAGCTTACATGGTAGCTCATTGTACTTATGTGGCTGGCACG
11006 TGTGAATGATAATGTGGAAAAGGGGTGTAATTGATTCTTTTTTGAGTTAGTTGTCATAATTTATT
689 TGTGAATGATAATGTGGAAAAGGGGTGTAATTGATTCTTTTTTGAGTTAGTTGTCATAATTTATT
11071 TTAGAAAGTTTGAGTAAT
754 TTAGAAAGTTTGAGTAAT
11089 TTTATATTAT
Statistics
Matches: 749, Mismatches: 17, Indels: 36
0.93 0.02 0.04
Matches are distributed among these distances:
785 48 0.06
787 22 0.03
788 36 0.05
789 21 0.03
790 18 0.02
793 1 0.00
795 93 0.12
796 54 0.07
797 77 0.10
798 10 0.01
799 38 0.05
800 15 0.02
802 30 0.04
803 71 0.09
804 74 0.10
805 141 0.19
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.37
Consensus pattern (781 bp):
AAAGACATCTTATTCAACTCACAGTCAACCAATAAAGTTCAACATTATAAAATCCGTTAATCTCA
TTGCCATGATTGGATGTTGTCAAAGAGCTTCTTCAATATAAAGTTTTGAGAAATAATTAACGTAA
TTTTGCGGAATGTTATAAAAGCTTTGATTTACTATAAGTTTATAGGAAAAAAAATAGAGTTCTAT
CAATTTGCTGAAGAAACTAGAGGTTTTGATCATCAATTTAATAAAAGACTCTTACAATCAAGCTC
AATGTTGCCAAAATGGGTTGACTATGACAGATGTTTGTCTTTATCCAAACGAACAATTTTTCAAT
TTTTAAATGAAGCTATGGTCATTCAAAACACTATTTATCATTTAAATTATATTAAAAGTATAGAT
TACTAATTTTTTAAATAAGTTCTAATCAAATAATTTTAAACTATAAAAATTTAAGTTATAATCAC
GAAAACTTTTTCTAAGGAATGATTGTATGTTAAAACTCAATAGCTTTTTATGTCCTTAACTTTTG
AATAAAATAATACAGTCTTTTAACTTTTTTCCACTCCATGAAGCCTCAAATCATAAAATAAATCA
AGACAACTCTTTGATTAAAGGAAACCATCATTGATCTTGTTATGCTAATGTGGTAGCCCATAAAG
CTTACATGGTAGCTCATTGTACTTATGTGGCTGGCACGTGTGAATGATAATGTGGAAAAGGGGTG
TAATTGATTCTTTTTTGAGTTAGTTGTCATAATTTATTTTAGAAAGTTTGAGTAATAGGATTTAT
G
Found at i:17678 original size:12 final size:12
Alignment explanation
Indices: 17652--17684 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17642 CTATTATACT
*
17652 ATTTT-ATTAAC
1 ATTTTAATTAAA
17663 ATTTTAATTAAA
1 ATTTTAATTAAA
17675 ATTTTAATTA
1 ATTTTAATTA
17685 TTAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTTTAATTAAA
Found at i:17994 original size:3 final size:3
Alignment explanation
Indices: 17951--17979 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
17941 ATCAAGAATA
17951 TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17980 AAATAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:26977 original size:12 final size:12
Alignment explanation
Indices: 26951--26989 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
26941 TTATTATACT
*
26951 ATTTT-ATTAAC
1 ATTTTAATTAAA
26962 ATTTTAATTAAA
1 ATTTTAATTAAA
26974 ATTTTAATTATAA
1 ATTTTAATTA-AA
26987 ATT
1 ATT
26990 ATATTTACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 5 0.20
12 15 0.60
13 5 0.20
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTTAATTAAA
Found at i:27130 original size:22 final size:20
Alignment explanation
Indices: 27090--27130 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
27080 TTCAATAAAA
27090 ATAATATATTAATAAATTAC
1 ATAATATATTAATAAATTAC
*
27110 ATAATGTATTATATTAAATTA
1 ATAATATATTA-A-TAAATTA
27131 TTTAATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 1 0.06
22 7 0.39
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATAATATATTAATAAATTAC
Found at i:27308 original size:10 final size:10
Alignment explanation
Indices: 27271--27309 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
27261 TTATATTAAA
27271 TTAATAAAAT
1 TTAATAAAAT
*
27281 TTATTAAAAGT
1 TTAATAAAA-T
27292 TTCAATAAAAT
1 TT-AATAAAAT
27303 TTAATAA
1 TTAATAA
27310 TCTTAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 13 0.52
11 6 0.24
12 6 0.24
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (10 bp):
TTAATAAAAT
Found at i:27326 original size:22 final size:21
Alignment explanation
Indices: 27301--27352 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 21
27291 TTTCAATAAA
*
27301 ATTTAATAATCTTAATATTT-AT
1 ATTTAATAAAC-T-ATATTTAAT
27323 ATTTAA-AAACTATATTTAAT
1 ATTTAATAAACTATATTTAAT
27343 ATTTTAATAA
1 A-TTTAATAA
27353 CGTTGACATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 6 0.23
20 4 0.15
21 8 0.31
22 8 0.31
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTTAATAAACTATATTTAAT
Found at i:28350 original size:2 final size:2
Alignment explanation
Indices: 28345--28369 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
28335 TATTTCTTGG
28345 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
28370 AGATATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:30073 original size:28 final size:26
Alignment explanation
Indices: 30042--30097 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
30032 TAATATGATT
*
30042 ATATTATTTATTATTATAAGGATATATA
1 ATATTACTT-TTATTATAA-GATATATA
* *
30070 ATATTACTTTTATTTTAATATATATA
1 ATATTACTTTTATTATAAGATATATA
30096 AT
1 AT
30098 GAATTTTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.36
27 8 0.32
28 8 0.32
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (26 bp):
ATATTACTTTTATTATAAGATATATA
Found at i:30270 original size:3 final size:3
Alignment explanation
Indices: 30262--30291 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
30252 ATCAAGAATA
30262 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
30292 AAATTAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:31578 original size:22 final size:23
Alignment explanation
Indices: 31535--31579 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
31525 TGATGGTTAA
*
31535 TTATTTCATTATTAAATGCAAAT
1 TTATTTCATTATTAAATACAAAT
* *
31558 TTATTTTATTA-TAATTACAAAT
1 TTATTTCATTATTAAATACAAAT
31580 AATTGATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (23 bp):
TTATTTCATTATTAAATACAAAT
Found at i:35899 original size:18 final size:18
Alignment explanation
Indices: 35878--35916 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
35868 GTTAAATAAG
*
35878 AAATAATAAA-TAAATATT
1 AAATAAAAAATTAAAT-TT
35896 AAATAAAAAATTAAATTT
1 AAATAAAAAATTAAATTT
35914 AAA
1 AAA
35917 AACGAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATAAAAAATTAAATTT
Found at i:38943 original size:104 final size:106
Alignment explanation
Indices: 38013--39018 Score: 1575
Period size: 104 Copynumber: 9.7 Consensus size: 106
38003 GGTAAGTTTT
* * * * * * * * *
38013 GTTGTCTAGAGGCCAATATCCTCCGCCGTGAAGTTAAAATTGACTCTGAAACTGGAAAATTGTTT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
38078 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC-TGC
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
* *
38118 GTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTT-AAACTGGCTCTGAAATTGGGAAGTTGTTT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
* *
38182 ATTGA-AA-CAGCGGT-CCTT-GTCGTGAAGTTGAACTTGC
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
** *
38219 GTTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTG-AA-TGAGAAGTTG-TT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
*
38281 GTTGACAACCAGCGGTCCCTTCGTCG-GAAGTTGAACTTGC
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
* *
38321 GTTGTCTGGAGTCC-ATATCCTTCGCTGTGAAGTTG-AATTGGCTCCGAAATTGGGAAATTGTTT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
*
38384 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAATATGC
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
*
38425 GTTGTCTGGAGT-C-ATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTG-TT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
* *
38487 ATTGAC-ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
* *
38527 GTTGTCTGGAGTCCAATATCC-TCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
38591 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
*
38632 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
*
38697 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
* *
38738 GTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
38803 G-TGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
*
38843 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTG-AATTGACTCTGAAATTGGGAAGTTGTTT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
38907 GTTGA-AACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
*
38947 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTGT
1 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG-T-TGT
39012 TTGTTGA
64 TTGTTGA
39019 AAGATAACTT
Statistics
Matches: 837, Mismatches: 44, Indels: 38
0.91 0.05 0.04
Matches are distributed among these distances:
99 6 0.01
100 36 0.04
101 71 0.08
102 102 0.12
103 101 0.12
104 185 0.22
105 182 0.22
106 144 0.17
107 10 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.33
Consensus pattern (106 bp):
GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGC
Done.