Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007626.1 Hibiscus syriacus cultivar Beakdansim tig00023188_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54090

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1595--1665
29
2.5
28
83
2
88
52
1
2
43
1.24
3054--3168
24
4.8
24
84
8
126
40
19
14
26
1.90
9461--9538
35
2.1
37
81
11
90
52
1
2
43
1.23
11163--11206
22
2.0
22
82
8
54
40
2
0
56
1.11
11260--11322
29
2.2
29
85
5
83
63
1
0
34
1.04
11546--11589
21
2.2
19
84
12
52
68
2
0
29
1.02
12878--12935
3
20.0
3
76
13
59
65
3
0
31
1.09
12878--12934
14
4.0
14
82
13
55
64
3
0
31
1.10
12878--12935
22
2.6
23
83
5
66
65
3
0
31
1.09
13060--13621
224
2.5
227
92
2
945
34
21
20
23
1.97
13060--13621
76
7.5
76
93
2
929
34
21
20
23
1.97
13626--13899
136
2.0
138
89
5
428
37
9
13
38
1.78
17016--17234
114
1.9
113
92
0
366
30
21
13
33
1.92
21367--21399
15
2.3
15
89
5
50
57
9
18
15
1.63
23749--23799
21
2.5
21
84
9
61
66
1
7
23
1.28
25930--25987
3
20.0
3
77
13
59
63
1
0
34
1.04
25930--25982
14
3.6
15
85
10
65
62
1
0
35
1.06
25930--25972
17
2.6
17
88
3
61
60
2
0
37
1.10
28259--28407
65
2.3
65
82
3
167
30
16
21
30
1.96
28743--28777
13
2.7
13
86
13
54
45
8
8
37
1.65
32478--32982
253
2.0
250
95
3
906
32
20
11
35
1.89
33585--33635
24
2.1
24
85
7
68
52
0
3
43
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33654--33719
25
2.5
26
83
11
73
53
3
3
40
1.32
34108--34133
13
2.0
13
100
0
52
46
0
0
53
1.00
35482--35522
2
21.0
2
95
5
75
48
0
0
51
1.00
36593--36637
22
2.1
22
84
8
58
46
2
4
46
1.35
37288--37315
2
14.0
2
100
0
56
50
0
0
50
1.00
39779--39871
12
7.8
12
70
9
55
51
17
12
18
1.76
39778--39885
24
4.5
24
80
2
119
51
16
12
18
1.75
48748--48777
2
15.0
2
100
0
60
50
0
0
50
1.00
51257--51301
22
2.1
22
84
8
58
46
2
4
46
1.35
51509--51556
15
3.1
15
77
14
53
50
4
0
45
1.21
51968--51999
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!