Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007628.1 Hibiscus syriacus cultivar Beakdansim tig00023397_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74180

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3901--3940
18
2.2
18
95
0
71
45
2
0
52
1.14
5550--5591
21
2.0
22
86
13
63
42
2
0
54
1.13
5946--5989
21
2.2
19
84
12
52
68
2
0
29
1.02
7283--7337
3
19.0
3
75
14
53
65
3
0
30
1.10
7464--8029
76
7.5
76
94
1
958
34
21
20
23
1.97
8034--8308
138
2.0
139
90
5
439
37
9
13
38
1.78
8845--8899
22
2.5
22
81
0
74
43
10
10
34
1.75
11434--11653
114
1.9
114
93
0
377
30
21
14
33
1.93
15824--15862
14
2.8
14
85
11
53
58
7
17
15
1.59
18221--18271
21
2.5
21
84
9
61
66
1
7
23
1.28
18711--18967
143
1.8
142
83
4
347
45
7
8
38
1.63
19387--19411
13
1.9
13
100
0
50
56
8
12
24
1.62
20431--20485
3
19.0
3
76
14
53
63
1
0
34
1.05
20431--20480
14
3.6
14
84
7
59
62
2
0
36
1.07
20431--20470
17
2.4
16
91
4
62
60
2
0
37
1.11
22768--22916
65
2.3
65
82
3
167
30
16
21
30
1.96
23256--23290
13
2.7
13
86
13
54
45
8
8
37
1.65
28659--28688
2
15.0
2
100
0
60
50
0
0
50
1.00
31178--31222
22
2.1
22
84
8
58
46
2
4
46
1.35
31435--31492
18
3.2
18
75
20
57
48
3
1
46
1.29
34370--34409
2
20.0
2
100
0
80
50
0
0
50
1.00
41763--41832
24
2.9
24
84
0
95
20
11
18
50
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41727--41832
48
2.2
48
81
6
117
22
12
16
48
1.80
41767--41831
12
5.4
12
72
7
51
16
12
18
52
1.74
43933--43957
13
1.9
13
100
0
50
16
48
24
12
1.79
43934--43988
18
3.1
18
83
0
74
21
47
18
12
1.82
43977--44007
7
4.3
7
92
8
53
16
32
25
25
1.96
46448--46554
24
4.5
24
75
6
92
21
11
15
51
1.75
65089--65158
27
2.7
26
78
10
72
55
1
2
40
1.23
67986--68059
29
2.6
28
79
10
78
54
1
2
41
1.23
68070--68099
15
1.9
16
93
6
53
53
0
0
46
1.00
73699--73734
19
1.9
18
88
5
54
41
0
5
52
1.24
73703--73746
19
2.3
19
84
7
54
47
0
4
47
1.22

Tables:   1

The End!