Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007629.1 Hibiscus syriacus cultivar Beakdansim tig00023454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 120129
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--6599 Score: 7798
Period size: 7 Copynumber: 969.4 Consensus size: 7
1 ACCCTAA
1 ACCCTAA
8 ACCCTAA
1 ACCCTAA
15 ACCC---
1 ACCCTAA
19 ACCCTAA
1 ACCCTAA
26 ACCCTAA
1 ACCCTAA
33 ACCCTAA
1 ACCCTAA
40 ACCCTAA
1 ACCCTAA
47 ACCCTAA
1 ACCCTAA
54 ACCCT-A
1 ACCCTAA
60 ACCCTAA
1 ACCCTAA
67 ACCCTAA
1 ACCCTAA
74 ACCCTAA
1 ACCCTAA
81 ACCCTAA
1 ACCCTAA
88 ACCCTAAA
1 ACCCT-AA
96 ACCCTAA
1 ACCCTAA
103 ACCCTAA
1 ACCCTAA
*
110 AACCTAA
1 ACCCTAA
117 ACCCTAA
1 ACCCTAA
124 ACCCTAA
1 ACCCTAA
131 ACCCTAA
1 ACCCTAA
138 ACCCTAA
1 ACCCTAA
145 ACCCTAA
1 ACCCTAA
152 ACCCTAA
1 ACCCTAA
159 ACCCTAA
1 ACCCTAA
166 ACCCT-A
1 ACCCTAA
172 ACCCTAA
1 ACCCTAA
179 ACCCTAA
1 ACCCTAA
186 ACCCTAA
1 ACCCTAA
193 ACCCTAA
1 ACCCTAA
200 ACCCTAA
1 ACCCTAA
207 A-CCTAAA
1 ACCCT-AA
214 ACCCTAA
1 ACCCTAA
221 ACCCTAA
1 ACCCTAA
228 ACCCTAA
1 ACCCTAA
235 ACCCTAA
1 ACCCTAA
242 A-CCTAA
1 ACCCTAA
248 ACCCTAA
1 ACCCTAA
255 ACCCTAA
1 ACCCTAA
262 ACCCT-A
1 ACCCTAA
268 ACCCTAA
1 ACCCTAA
275 A-CCT-A
1 ACCCTAA
280 ACCCTAA
1 ACCCTAA
287 ACCCTAA
1 ACCCTAA
294 A-CCTAA
1 ACCCTAA
300 ACCCTAA
1 ACCCTAA
307 ACCCTAA
1 ACCCTAA
314 ACCCTAA
1 ACCCTAA
321 ACCCTAA
1 ACCCTAA
328 ACCCTAA
1 ACCCTAA
335 ACCCTAA
1 ACCCTAA
342 A-CCTAA
1 ACCCTAA
348 ACCCTAA
1 ACCCTAA
355 ACCCTAA
1 ACCCTAA
362 ACCCTAA
1 ACCCTAA
369 A-CCTAA
1 ACCCTAA
375 ACCCTAA
1 ACCCTAA
382 ACCCTAA
1 ACCCTAA
389 ACCCTAA
1 ACCCTAA
396 A-CCTAA
1 ACCCTAA
402 ACCCTAA
1 ACCCTAA
409 ACCCT-A
1 ACCCTAA
415 ACCCTAA
1 ACCCTAA
422 A-CCTAA
1 ACCCTAA
428 ACCCTAA
1 ACCCTAA
435 A-CCTAA
1 ACCCTAA
441 A-CCTAA
1 ACCCTAA
447 ACCCTAA
1 ACCCTAA
454 A-CCTAA
1 ACCCTAA
460 ACCCT-A
1 ACCCTAA
466 ACCCTAA
1 ACCCTAA
473 ACCCTAA
1 ACCCTAA
480 ACCCT-A
1 ACCCTAA
486 A-CC-AA
1 ACCCTAA
491 ACCCTAA
1 ACCCTAA
498 ACCCTAA
1 ACCCTAA
505 A-CCTAA
1 ACCCTAA
511 ACCCTAA
1 ACCCTAA
518 ACCCTAA
1 ACCCTAA
525 ACCCTAA
1 ACCCTAA
532 A-CCTAA
1 ACCCTAA
538 ACCCT-A
1 ACCCTAA
544 A--CTAA
1 ACCCTAA
*
549 ACCCGAA
1 ACCCTAA
556 ACCCTAA
1 ACCCTAA
563 ACCCTAA
1 ACCCTAA
570 ACCCTAA
1 ACCCTAA
577 ACCCTAA
1 ACCCTAA
584 ACCCTAA
1 ACCCTAA
591 ACCCTAA
1 ACCCTAA
598 ACCCTAA
1 ACCCTAA
605 A--CTAA
1 ACCCTAA
610 ACCCTAA
1 ACCCTAA
617 ACCCTAA
1 ACCCTAA
624 A-CCTAA
1 ACCCTAA
630 ACCCTAA
1 ACCCTAA
637 ACCCTAA
1 ACCCTAA
644 ACCCTAA
1 ACCCTAA
651 ACCCTAA
1 ACCCTAA
658 ACCCTAA
1 ACCCTAA
665 A-CCTAA
1 ACCCTAA
671 ACCCTAA
1 ACCCTAA
678 ACCCTAA
1 ACCCTAA
685 ACCCTAA
1 ACCCTAA
692 A-CCT-A
1 ACCCTAA
697 ACCCTAAA
1 ACCCT-AA
705 ACCCTAA
1 ACCCTAA
712 ACCCTAA
1 ACCCTAA
719 ACCCTAA
1 ACCCTAA
726 A-CCTAAA
1 ACCCT-AA
733 ACCCTAA
1 ACCCTAA
740 ACCCTAA
1 ACCCTAA
747 ACCCTAA
1 ACCCTAA
754 ACCCTAA
1 ACCCTAA
761 ACCCTAA
1 ACCCTAA
768 ACCCTAA
1 ACCCTAA
775 ACCCTAA
1 ACCCTAA
782 ACCCTAA
1 ACCCTAA
789 ACCCTAAA
1 ACCCT-AA
797 ACCCTAA
1 ACCCTAA
804 ACCCTAA
1 ACCCTAA
*
811 ACCCAAA
1 ACCCTAA
818 ACCCTAA
1 ACCCTAA
825 ACCCTAA
1 ACCCTAA
832 ACCCTAA
1 ACCCTAA
839 A-CC-AA
1 ACCCTAA
844 ACCCT-A
1 ACCCTAA
850 ACCCTAA
1 ACCCTAA
*
857 AACCTAA
1 ACCCTAA
864 ACCCTAA
1 ACCCTAA
871 ACCCTAA
1 ACCCTAA
878 ACCCTAA
1 ACCCTAA
885 ACCCTAA
1 ACCCTAA
892 ACCCT-A
1 ACCCTAA
898 ACCCTAA
1 ACCCTAA
905 ACCCTAA
1 ACCCTAA
912 ACCCTAA
1 ACCCTAA
919 ACCCTAA
1 ACCCTAA
926 ACCCTAA
1 ACCCTAA
933 ACCCTAA
1 ACCCTAA
940 ACCCTAA
1 ACCCTAA
947 ACCCTAA
1 ACCCTAA
954 ACCCTAAA
1 ACCCT-AA
962 ACCCTAAA
1 ACCCT-AA
970 ACCCTAA
1 ACCCTAA
977 ACCCTAA
1 ACCCTAA
984 ACCCTAA
1 ACCCTAA
991 ACCCT-A
1 ACCCTAA
997 ACCCTAA
1 ACCCTAA
1004 ACCCTAA
1 ACCCTAA
1011 ACCCT-A
1 ACCCTAA
1017 A-CCTAA
1 ACCCTAA
1023 ACCCTAA
1 ACCCTAA
1030 ACCCTAA
1 ACCCTAA
1037 ACCCTAA
1 ACCCTAA
1044 ACCC--A
1 ACCCTAA
1049 ACCCTAA
1 ACCCTAA
1056 ACCCTAA
1 ACCCTAA
1063 ACCCTAAA
1 ACCCT-AA
1071 ACCCTAA
1 ACCCTAA
1078 ACCCTAA
1 ACCCTAA
1085 ACCCTAA
1 ACCCTAA
1092 ACCCTAA
1 ACCCTAA
1099 A-CCTAA
1 ACCCTAA
1105 ACCCTAA
1 ACCCTAA
1112 ACCCTAA
1 ACCCTAA
1119 ACCCTAA
1 ACCCTAA
1126 A-CC-AA
1 ACCCTAA
1131 ACCCTAA
1 ACCCTAA
1138 ACCCTAA
1 ACCCTAA
1145 ACCCT-A
1 ACCCTAA
1151 ACCCTAA
1 ACCCTAA
1158 ACCCTACTA
1 ACCCTA--A
1167 ACCCTAA
1 ACCCTAA
1174 ACCCTAA
1 ACCCTAA
1181 ACCCTAA
1 ACCCTAA
1188 ACCCTAA
1 ACCCTAA
1195 ACCCTAA
1 ACCCTAA
1202 ACCCTAA
1 ACCCTAA
1209 ACCCTAA
1 ACCCTAA
1216 A-CCTAA
1 ACCCTAA
1222 A-CCTAA
1 ACCCTAA
1228 ACCCTAA
1 ACCCTAA
1235 ACCCTAA
1 ACCCTAA
1242 ACCCTAA
1 ACCCTAA
1249 ACCCTAA
1 ACCCTAA
1256 ACCCTAA
1 ACCCTAA
1263 ACCCTAA
1 ACCCTAA
1270 ACCCTAA
1 ACCCTAA
1277 ACCCTAA
1 ACCCTAA
*
1284 ACCCGAA
1 ACCCTAA
1291 ACCCCCTAA
1 A--CCCTAA
1300 ACCCTAA
1 ACCCTAA
1307 ACCCTAA
1 ACCCTAA
1314 ACCCTAA
1 ACCCTAA
1321 A-CCTAA
1 ACCCTAA
1327 ACCCTAA
1 ACCCTAA
1334 ACCC-AA
1 ACCCTAA
1340 ACCCTAA
1 ACCCTAA
1347 ACCCTAA
1 ACCCTAA
1354 A-CCTAA
1 ACCCTAA
1360 ACCCTAA
1 ACCCTAA
1367 ACCCTAA
1 ACCCTAA
1374 ACCCT-A
1 ACCCTAA
1380 A-CCTAA
1 ACCCTAA
1386 ACCCT-A
1 ACCCTAA
1392 ACCCTAA
1 ACCCTAA
1399 ACCCT-A
1 ACCCTAA
*
1405 ACCCGAA
1 ACCCTAA
1412 A-CCT-A
1 ACCCTAA
1417 ACCCTAA
1 ACCCTAA
1424 ACCCTAA
1 ACCCTAA
1431 ACCCTAA
1 ACCCTAA
1438 ACCCTAA
1 ACCCTAA
1445 ACCCTAA
1 ACCCTAA
1452 ACCCTAA
1 ACCCTAA
1459 ACCCTAA
1 ACCCTAA
1466 ACCCTAA
1 ACCCTAA
1473 ACCCTAA
1 ACCCTAA
*
1480 ACCCCAA
1 ACCCTAA
1487 ACCCTAA
1 ACCCTAA
1494 ACCC-AA
1 ACCCTAA
1500 ACCCTAA
1 ACCCTAA
1507 ACCCTAA
1 ACCCTAA
1514 ACCCTACA
1 ACCCTA-A
1522 ACCCTAA
1 ACCCTAA
1529 ACCCTAA
1 ACCCTAA
1536 ACCCTAA
1 ACCCTAA
1543 ACCCTAA
1 ACCCTAA
1550 ACCCTAA
1 ACCCTAA
1557 ACCCTAA
1 ACCCTAA
1564 ACCCT-A
1 ACCCTAA
1570 ACCC-AA
1 ACCCTAA
1576 ACCC-AA
1 ACCCTAA
1582 ACCCTAA
1 ACCCTAA
1589 ACCCTAA
1 ACCCTAA
1596 ACCCTAA
1 ACCCTAA
1603 A-CCTAA
1 ACCCTAA
1609 ACCCTAA
1 ACCCTAA
1616 ACCCTAA
1 ACCCTAA
1623 A-CCTAA
1 ACCCTAA
1629 ACCCTAA
1 ACCCTAA
1636 ACCCTAA
1 ACCCTAA
*
1643 ACCCGAA
1 ACCCTAA
1650 ACCCTAA
1 ACCCTAA
1657 ACCCT-A
1 ACCCTAA
1663 ACCCTAA
1 ACCCTAA
1670 ACCCT-A
1 ACCCTAA
1676 A-CCTAA
1 ACCCTAA
1682 ACCCTAA
1 ACCCTAA
1689 ACCCTAA
1 ACCCTAA
1696 ACCCTAA
1 ACCCTAA
1703 ACCCTAA
1 ACCCTAA
1710 ACCCTAA
1 ACCCTAA
1717 ACCCTAA
1 ACCCTAA
1724 ACCCT-A
1 ACCCTAA
1730 ACCCTAA
1 ACCCTAA
1737 ACCC-AA
1 ACCCTAA
1743 ACCCTAA
1 ACCCTAA
1750 ACCCTAA
1 ACCCTAA
1757 ACCCTAA
1 ACCCTAA
1764 ACCCTAA
1 ACCCTAA
1771 ACCCTAA
1 ACCCTAA
1778 ACCCT-A
1 ACCCTAA
1784 ACCCTAA
1 ACCCTAA
1791 ACCCTAA
1 ACCCTAA
1798 ACCCTAA
1 ACCCTAA
1805 ACCCTAA
1 ACCCTAA
1812 ACCCTAA
1 ACCCTAA
1819 A-CCTAA
1 ACCCTAA
1825 ACCCT-A
1 ACCCTAA
1831 ACCCTAA
1 ACCCTAA
1838 ACCCTAA
1 ACCCTAA
1845 ACCCTAA
1 ACCCTAA
1852 A-CCTAA
1 ACCCTAA
1858 ACCCTAA
1 ACCCTAA
1865 ACCCTAA
1 ACCCTAA
1872 ACCCTAA
1 ACCCTAA
1879 ACCCTAA
1 ACCCTAA
1886 ACCCTAA
1 ACCCTAA
1893 ACCCTAA
1 ACCCTAA
1900 ACCCT-A
1 ACCCTAA
1906 ACCCTAA
1 ACCCTAA
1913 ACCCTAA
1 ACCCTAA
1920 A-CCTAA
1 ACCCTAA
1926 ACCCTAA
1 ACCCTAA
1933 ACCCTAA
1 ACCCTAA
1940 ACCCTAA
1 ACCCTAA
1947 ACCCTAA
1 ACCCTAA
1954 ACCCT-A
1 ACCCTAA
1960 ACCCTAA
1 ACCCTAA
1967 ACCCTAA
1 ACCCTAA
1974 ACCCTAA
1 ACCCTAA
1981 ACCCTAA
1 ACCCTAA
1988 ACCC--A
1 ACCCTAA
1993 ACCCTAA
1 ACCCTAA
2000 ACCCTAA
1 ACCCTAA
2007 ACCCTAA
1 ACCCTAA
2014 ACCCTAA
1 ACCCTAA
2021 ACCCTAA
1 ACCCTAA
2028 ACCCT-A
1 ACCCTAA
2034 ACCCTAA
1 ACCCTAA
2041 ACCCTAA
1 ACCCTAA
2048 ACCCTAA
1 ACCCTAA
2055 ACCCTAA
1 ACCCTAA
2062 ACCCTAA
1 ACCCTAA
2069 ACCCTAA
1 ACCCTAA
2076 ACCCTAA
1 ACCCTAA
2083 ACCCTAA
1 ACCCTAA
2090 ACCCTAA
1 ACCCTAA
2097 ACCCTAA
1 ACCCTAA
2104 A-CCTAA
1 ACCCTAA
2110 ACCCTAA
1 ACCCTAA
2117 ACCCTAA
1 ACCCTAA
2124 ACCCTAA
1 ACCCTAA
2131 ACCCTAA
1 ACCCTAA
2138 ACCCTAA
1 ACCCTAA
2145 ACCCTAA
1 ACCCTAA
2152 ACCCT-A
1 ACCCTAA
2158 ACCCTAA
1 ACCCTAA
2165 ACCCTAA
1 ACCCTAA
2172 ACCCTAA
1 ACCCTAA
2179 ACCCTAA
1 ACCCTAA
2186 ACCCTAA
1 ACCCTAA
2193 ACCCTAA
1 ACCCTAA
2200 ACCCT-A
1 ACCCTAA
2206 ACCCT-A
1 ACCCTAA
2212 ACCCTAA
1 ACCCTAA
2219 ACCCTAA
1 ACCCTAA
2226 ACCCTAA
1 ACCCTAA
2233 ACCCTAA
1 ACCCTAA
2240 ACCCT-A
1 ACCCTAA
2246 ACCCTAA
1 ACCCTAA
2253 ACCCT-A
1 ACCCTAA
2259 ACCCTAA
1 ACCCTAA
2266 ACCCTAA
1 ACCCTAA
2273 ACCCT-A
1 ACCCTAA
2279 ACCCTAA
1 ACCCTAA
2286 ACCCTAA
1 ACCCTAA
2293 ACCCTAA
1 ACCCTAA
2300 A-CCT-A
1 ACCCTAA
2305 ACCC-AA
1 ACCCTAA
2311 ACCCTAA
1 ACCCTAA
2318 ACCCT-A
1 ACCCTAA
2324 ACCCTAA
1 ACCCTAA
2331 ACCCTAA
1 ACCCTAA
2338 ACCCTAA
1 ACCCTAA
2345 ACCCTAA
1 ACCCTAA
2352 ACCCTAA
1 ACCCTAA
2359 ACCCT-A
1 ACCCTAA
2365 ACCCTAA
1 ACCCTAA
2372 ACCCT-A
1 ACCCTAA
2378 ACCCT-A
1 ACCCTAA
2384 ACCCTAA
1 ACCCTAA
2391 ACCCTCTAA
1 A-CC-CTAA
2400 ACCCTAA
1 ACCCTAA
2407 ACCCTAA
1 ACCCTAA
2414 ACCCTAA
1 ACCCTAA
2421 A-CCT-A
1 ACCCTAA
2426 ACCCTAA
1 ACCCTAA
2433 ACCCT-A
1 ACCCTAA
2439 ACCC-AA
1 ACCCTAA
2445 ACCCTAA
1 ACCCTAA
2452 ACCCTAA
1 ACCCTAA
2459 A-CCT-A
1 ACCCTAA
2464 ACCCT-A
1 ACCCTAA
2470 ACCCTAAA
1 ACCCT-AA
2478 ACCCTAA
1 ACCCTAA
2485 ACCCTAA
1 ACCCTAA
2492 ACCCTAA
1 ACCCTAA
2499 ACCCTAA
1 ACCCTAA
2506 ACCCTAA
1 ACCCTAA
2513 ACCCTAA
1 ACCCTAA
2520 ACCCTAA
1 ACCCTAA
2527 A-CCTAA
1 ACCCTAA
2533 ACCCTAAA
1 ACCCT-AA
2541 ACCCTAA
1 ACCCTAA
2548 ACCCTAA
1 ACCCTAA
2555 ACCCT-A
1 ACCCTAA
2561 ACCCTAA
1 ACCCTAA
2568 A-CCTAA
1 ACCCTAA
2574 ACCCT-A
1 ACCCTAA
2580 ACCCTAA
1 ACCCTAA
2587 ACCCTAA
1 ACCCTAA
2594 ACCCTAA
1 ACCCTAA
2601 ACCCTAA
1 ACCCTAA
2608 A-CCTAAA
1 ACCCT-AA
2615 ACCCTAA
1 ACCCTAA
2622 ACCCTAA
1 ACCCTAA
2629 ACCCTAA
1 ACCCTAA
2636 ACCCTAAA
1 ACCCT-AA
2644 ACCCTAA
1 ACCCTAA
2651 ACCCTAA
1 ACCCTAA
2658 ACCCTAA
1 ACCCTAA
2665 ACCCTAA
1 ACCCTAA
2672 ACCCTAA
1 ACCCTAA
2679 ACCCT-A
1 ACCCTAA
2685 ACCCTAA
1 ACCCTAA
2692 ACCCTAA
1 ACCCTAA
2699 ACCCT-A
1 ACCCTAA
2705 ACCCTAA
1 ACCCTAA
2712 ACCCTAA
1 ACCCTAA
2719 ACCC-AA
1 ACCCTAA
2725 ACCCTAA
1 ACCCTAA
2732 ACCCTAA
1 ACCCTAA
2739 ACCCTAA
1 ACCCTAA
2746 A-CCTAA
1 ACCCTAA
2752 ACCCTAA
1 ACCCTAA
2759 ACCCTAA
1 ACCCTAA
2766 ACCCT-A
1 ACCCTAA
2772 ACCCT-A
1 ACCCTAA
2778 ACCCTAA
1 ACCCTAA
2785 ACCCTAA
1 ACCCTAA
2792 ACCCTAA
1 ACCCTAA
2799 ACCCTAA
1 ACCCTAA
2806 ACCCTAA
1 ACCCTAA
2813 ACCCTAA
1 ACCCTAA
2820 ACCCTAA
1 ACCCTAA
2827 ACCCTAA
1 ACCCTAA
2834 ACCCTAA
1 ACCCTAA
2841 ACCCTAA
1 ACCCTAA
2848 ACCCTAA
1 ACCCTAA
2855 ACCCTAA
1 ACCCTAA
2862 A-CCTAA
1 ACCCTAA
2868 ACCCTAA
1 ACCCTAA
2875 ACCCTAA
1 ACCCTAA
2882 ACCCT-A
1 ACCCTAA
2888 ACCCTAA
1 ACCCTAA
2895 ACCCTAA
1 ACCCTAA
2902 ACCCT-A
1 ACCCTAA
2908 ACCCTAA
1 ACCCTAA
2915 ACCCTAA
1 ACCCTAA
2922 ACCCTAA
1 ACCCTAA
2929 ACCCT-A
1 ACCCTAA
2935 ACCCTAA
1 ACCCTAA
2942 ACCCTAA
1 ACCCTAA
2949 ACCCTAA
1 ACCCTAA
2956 ACCCTAA
1 ACCCTAA
2963 ACCCTAA
1 ACCCTAA
2970 ACCCTAA
1 ACCCTAA
2977 ACCCTAA
1 ACCCTAA
2984 ACCCTAA
1 ACCCTAA
2991 ACCCTAA
1 ACCCTAA
2998 ACCCTAA
1 ACCCTAA
3005 ACCCTAA
1 ACCCTAA
3012 ACCCTAAA
1 ACCCT-AA
3020 ACCCT-A
1 ACCCTAA
3026 ACCCTAA
1 ACCCTAA
3033 ACCCT-A
1 ACCCTAA
3039 ACCCTAA
1 ACCCTAA
3046 ACCC-AA
1 ACCCTAA
3052 ACCCTAA
1 ACCCTAA
3059 ACCCT-A
1 ACCCTAA
3065 ACCCTAA
1 ACCCTAA
3072 ACCCTAA
1 ACCCTAA
3079 ACCCTAA
1 ACCCTAA
3086 ACCCTAA
1 ACCCTAA
3093 ACCCT-A
1 ACCCTAA
3099 ACCCTAA
1 ACCCTAA
3106 ACCCTAA
1 ACCCTAA
3113 ACCCTAA
1 ACCCTAA
3120 ACCCTAA
1 ACCCTAA
3127 ACCCTAA
1 ACCCTAA
3134 ACCCTAA
1 ACCCTAA
3141 ACCCTAA
1 ACCCTAA
*
3148 ACCC-GA
1 ACCCTAA
3154 ACCCTAA
1 ACCCTAA
3161 ACCCTAA
1 ACCCTAA
3168 ACCCTAA
1 ACCCTAA
3175 ACCCTAA
1 ACCCTAA
3182 ACCCTAA
1 ACCCTAA
3189 ACCCT-A
1 ACCCTAA
3195 ACCCTAA
1 ACCCTAA
3202 ACCCTAA
1 ACCCTAA
*
3209 ACCCTGA
1 ACCCTAA
3216 ACCCTAA
1 ACCCTAA
3223 ACCCT-A
1 ACCCTAA
3229 ACCCT-A
1 ACCCTAA
3235 ACCCT-A
1 ACCCTAA
3241 ACCCTAA
1 ACCCTAA
3248 ACCCTAA
1 ACCCTAA
3255 ACCCTAA
1 ACCCTAA
3262 ACCC-AA
1 ACCCTAA
3268 ACCCTAA
1 ACCCTAA
3275 ACCCTAA
1 ACCCTAA
3282 ACCCTAA
1 ACCCTAA
3289 ACCCTAA
1 ACCCTAA
3296 A-CCT-A
1 ACCCTAA
*
3301 ACCCGAA
1 ACCCTAA
3308 ACCCTAA
1 ACCCTAA
3315 ACCCTGAAA
1 ACCCT--AA
3324 ACCCTAA
1 ACCCTAA
3331 ACCCTAA
1 ACCCTAA
3338 ACCCTAA
1 ACCCTAA
3345 ACCCTAA
1 ACCCTAA
*
3352 ACCCTGA
1 ACCCTAA
3359 ACCCTAA
1 ACCCTAA
3366 ACCCTAA
1 ACCCTAA
3373 ACCCTAA
1 ACCCTAA
3380 ACCCTAA
1 ACCCTAA
3387 ACCCT-A
1 ACCCTAA
3393 A-CCTAA
1 ACCCTAA
3399 ACCCTAA
1 ACCCTAA
3406 ACCCTAA
1 ACCCTAA
3413 ACCCT-A
1 ACCCTAA
3419 ACCCTAA
1 ACCCTAA
*
3426 ACCCTGA
1 ACCCTAA
3433 A-CCTAA
1 ACCCTAA
*
3439 ACCCTGA
1 ACCCTAA
3446 ACCC---
1 ACCCTAA
3450 ACCCTAA
1 ACCCTAA
*
3457 ACCC-GA
1 ACCCTAA
3463 A-CCTAA
1 ACCCTAA
*
3469 ACCCTGA
1 ACCCTAA
3476 ACCCTAA
1 ACCCTAA
3483 ACCCTAA
1 ACCCTAA
3490 ACCCTAA
1 ACCCTAA
3497 ACCCTAA
1 ACCCTAA
3504 ACCCTAA
1 ACCCTAA
3511 ACCCTAA
1 ACCCTAA
*
3518 A-CCTGA
1 ACCCTAA
*
3524 ACCCTGA
1 ACCCTAA
*
3531 ACCCTGA
1 ACCCTAA
3538 ACCCTAA
1 ACCCTAA
*
3545 ACCCTGA
1 ACCCTAA
3552 ACCCTAA
1 ACCCTAA
3559 ACCCTGAA
1 ACCCT-AA
3567 ACCCTAA
1 ACCCTAA
*
3574 ACCCTGA
1 ACCCTAA
3581 ACCCTAA
1 ACCCTAA
3588 ACCCT-A
1 ACCCTAA
3594 ACCCTAA
1 ACCCTAA
*
3601 ACCCTGA
1 ACCCTAA
*
3608 ACCCTGA
1 ACCCTAA
3615 ACCCTAA
1 ACCCTAA
3622 ACCC--A
1 ACCCTAA
3627 ACCCTAA
1 ACCCTAA
3634 ACCCT-A
1 ACCCTAA
*
3640 A-CCTGA
1 ACCCTAA
*
3646 ACCCTGA
1 ACCCTAA
*
3653 ACCCTGA
1 ACCCTAA
3660 ACCCTAA
1 ACCCTAA
3667 ACCCT-A
1 ACCCTAA
*
3673 ACCCTGA
1 ACCCTAA
*
3680 ACCCTGA
1 ACCCTAA
3687 ACCCTAA
1 ACCCTAA
3694 ACCCTAA
1 ACCCTAA
*
3701 A-CCTGA
1 ACCCTAA
3707 ACCCTAA
1 ACCCTAA
3714 ACCCTAA
1 ACCCTAA
3721 ACCCTAA
1 ACCCTAA
3728 ACCCT-A
1 ACCCTAA
*
3734 A-CCTGA
1 ACCCTAA
3740 ACCCTAA
1 ACCCTAA
*
3747 A-CCTGA
1 ACCCTAA
3753 ACCCTAA
1 ACCCTAA
3760 ACCCTAA
1 ACCCTAA
3767 ACCCTAA
1 ACCCTAA
3774 ACCCTAA
1 ACCCTAA
*
3781 ACCCTGA
1 ACCCTAA
3788 A-CCT-A
1 ACCCTAA
*
3793 ACCCTGA
1 ACCCTAA
3800 ACCCT-A
1 ACCCTAA
3806 ACCCTAA
1 ACCCTAA
3813 A-CCTAA
1 ACCCTAA
3819 ACCCTAA
1 ACCCTAA
3826 ACCCTAA
1 ACCCTAA
*
3833 ACCCTGA
1 ACCCTAA
3840 ACCC-AA
1 ACCCTAA
*
3846 ACCCTGA
1 ACCCTAA
*
3853 ACCCTGA
1 ACCCTAA
3860 ACCCTAA
1 ACCCTAA
3867 ACCC-AA
1 ACCCTAA
3873 ACCCTAA
1 ACCCTAA
3880 ACCCT-A
1 ACCCTAA
3886 ACCCTAA
1 ACCCTAA
3893 A-CCTAA
1 ACCCTAA
*
3899 ACCCTGA
1 ACCCTAA
3906 ACCCTAA
1 ACCCTAA
*
3913 ACCCTGA
1 ACCCTAA
*
3920 ACCCTGA
1 ACCCTAA
3927 A-CCT-A
1 ACCCTAA
3932 ACCCTAA
1 ACCCTAA
3939 ACCCTAA
1 ACCCTAA
3946 ACCCTAA
1 ACCCTAA
*
3953 ACCC-GA
1 ACCCTAA
3959 ACCCTAA
1 ACCCTAA
3966 ACCCTAA
1 ACCCTAA
3973 ACCCTAA
1 ACCCTAA
3980 ACCCTAA
1 ACCCTAA
*
3987 ACCC-GA
1 ACCCTAA
*
3993 ACCCTGA
1 ACCCTAA
4000 ACCCT-A
1 ACCCTAA
4006 ACCCTAA
1 ACCCTAA
4013 ACCCTAA
1 ACCCTAA
*
4020 ACCCTGA
1 ACCCTAA
*
4027 A--CTGA
1 ACCCTAA
4032 ACCCTAA
1 ACCCTAA
4039 ACCCTAA
1 ACCCTAA
4046 ACCCT-A
1 ACCCTAA
4052 ACCCTAA
1 ACCCTAA
*
4059 ACCCTGA
1 ACCCTAA
*
4066 ACCCTGA
1 ACCCTAA
4073 ACCCTAA
1 ACCCTAA
4080 A-CCTAA
1 ACCCTAA
*
4086 ACCCTGA
1 ACCCTAA
4093 ACCCTAA
1 ACCCTAA
4100 ACCCTAA
1 ACCCTAA
*
4107 ACCCGAA
1 ACCCTAA
*
4114 ACCCTGA
1 ACCCTAA
4121 ACCCTAA
1 ACCCTAA
*
4128 ACCCTGA
1 ACCCTAA
4135 ACCCTAA
1 ACCCTAA
*
4142 ACCCTGA
1 ACCCTAA
*
4149 ACCCTGA
1 ACCCTAA
4156 ACCCTAA
1 ACCCTAA
4163 ACCCTAA
1 ACCCTAA
4170 ACCCTAA
1 ACCCTAA
*
4177 ACCCTGA
1 ACCCTAA
4184 ACCC--A
1 ACCCTAA
*
4189 ACCCTGA
1 ACCCTAA
*
4196 ACCCTGA
1 ACCCTAA
4203 ACCCTGAA
1 ACCCT-AA
* *
4211 CCCCTGA
1 ACCCTAA
*
4218 ACCCT-G
1 ACCCTAA
*
4224 ACCCTGA
1 ACCCTAA
*
4231 ACCCTGA
1 ACCCTAA
4238 ACCCTGAA
1 ACCCT-AA
* *
4246 CCCCTGA
1 ACCCTAA
*
4253 ACCCTGA
1 ACCCTAA
*
4260 ACCCTGA
1 ACCCTAA
*
4267 ACCCTGA
1 ACCCTAA
*
4274 ACCCTGA
1 ACCCTAA
*
4281 ACCCTGA
1 ACCCTAA
4288 ACCCTGAA
1 ACCCT-AA
* *
4296 CCCCTGA
1 ACCCTAA
*
4303 ACCCTGA
1 ACCCTAA
*
4310 ACCCTGA
1 ACCCTAA
*
4317 ACCCTGA
1 ACCCTAA
*
4324 ACCCTGA
1 ACCCTAA
*
4331 ACCCTGA
1 ACCCTAA
*
4338 ACCCTGA
1 ACCCTAA
*
4345 ACCCTGA
1 ACCCTAA
*
4352 ACCCTGA
1 ACCCTAA
*
4359 ACCCTGA
1 ACCCTAA
*
4366 ACCCTGA
1 ACCCTAA
*
4373 ACCCTGA
1 ACCCTAA
*
4380 ACCCTGA
1 ACCCTAA
*
4387 ACCC-GA
1 ACCCTAA
*
4393 ACCCTGA
1 ACCCTAA
*
4400 ACCCTGA
1 ACCCTAA
*
4407 ACCCTGA
1 ACCCTAA
*
4414 ACCCTGA
1 ACCCTAA
*
4421 ACCCTGA
1 ACCCTAA
*
4428 A-CCTGA
1 ACCCTAA
*
4434 ACCCTGA
1 ACCCTAA
*
4441 ACCCTGA
1 ACCCTAA
*
4448 ACCCTGA
1 ACCCTAA
*
4455 ACCCTGA
1 ACCCTAA
*
4462 A-CCTGA
1 ACCCTAA
*
4468 ACCCTGA
1 ACCCTAA
*
4475 ACCCTGA
1 ACCCTAA
*
4482 ACCCTGA
1 ACCCTAA
*
4489 A-CCTGA
1 ACCCTAA
*
4495 ACCCTGA
1 ACCCTAA
*
4502 ACCCTGA
1 ACCCTAA
*
4509 ACCCTGA
1 ACCCTAA
*
4516 ACCCTGA
1 ACCCTAA
*
4523 ACCCTGA
1 ACCCTAA
*
4530 A-CC-GA
1 ACCCTAA
*
4535 A-CCTGA
1 ACCCTAA
*
4541 ACCCTGA
1 ACCCTAA
*
4548 ACCCTGA
1 ACCCTAA
*
4555 ACCCTGA
1 ACCCTAA
*
4562 ACCCTGA
1 ACCCTAA
*
4569 ACCCTGA
1 ACCCTAA
*
4576 ACCCTGA
1 ACCCTAA
*
4583 A-CCTGA
1 ACCCTAA
*
4589 ACCCTGA
1 ACCCTAA
*
4596 ACCCTGA
1 ACCCTAA
*
4603 ACCCTGA
1 ACCCTAA
*
4610 ACCCTGA
1 ACCCTAA
*
4617 ACCCTGA
1 ACCCTAA
*
4624 A-CCTGA
1 ACCCTAA
*
4630 ACCCTGA
1 ACCCTAA
*
4637 ACCCTGA
1 ACCCTAA
*
4644 ACCCTGA
1 ACCCTAA
*
4651 ACCCTGA
1 ACCCTAA
*
4658 ACCCTGA
1 ACCCTAA
*
4665 ACCCTGA
1 ACCCTAA
*
4672 ACCCTGA
1 ACCCTAA
*
4679 A-CCTGA
1 ACCCTAA
*
4685 ACCCTGA
1 ACCCTAA
*
4692 ACCCTGA
1 ACCCTAA
*
4699 ACCCTGA
1 ACCCTAA
*
4706 A-CCTGA
1 ACCCTAA
*
4712 A-CCTGA
1 ACCCTAA
*
4718 ACCCTGA
1 ACCCTAA
*
4725 ACCCTGA
1 ACCCTAA
*
4732 ACCCTGA
1 ACCCTAA
*
4739 ACCCTGA
1 ACCCTAA
*
4746 ACCCTGA
1 ACCCTAA
*
4753 ACCCTGA
1 ACCCTAA
*
4760 ACCCTGA
1 ACCCTAA
*
4767 ACCCTGA
1 ACCCTAA
*
4774 ACCCTGA
1 ACCCTAA
*
4781 ACCCTGA
1 ACCCTAA
*
4788 A-CCTGA
1 ACCCTAA
*
4794 ACCCTGA
1 ACCCTAA
*
4801 ACCCTGA
1 ACCCTAA
*
4808 ACCCTGA
1 ACCCTAA
*
4815 ACCCTGA
1 ACCCTAA
*
4822 ACCCTGA
1 ACCCTAA
*
4829 ACCCTGA
1 ACCCTAA
*
4836 ACCCTGA
1 ACCCTAA
*
4843 ACCCTGA
1 ACCCTAA
*
4850 ACCCTGA
1 ACCCTAA
*
4857 A-CCTGA
1 ACCCTAA
*
4863 ACCCTGA
1 ACCCTAA
*
4870 A-CCTGA
1 ACCCTAA
*
4876 ACCCTGA
1 ACCCTAA
*
4883 ACCCTGA
1 ACCCTAA
*
4890 ACCCTGA
1 ACCCTAA
*
4897 ACCCTGA
1 ACCCTAA
*
4904 ACCCTGA
1 ACCCTAA
*
4911 A-CCTGA
1 ACCCTAA
*
4917 ACCCTGA
1 ACCCTAA
*
4924 A-CCTGA
1 ACCCTAA
*
4930 ACCCTGA
1 ACCCTAA
*
4937 ACCCTGA
1 ACCCTAA
*
4944 ACCCTGA
1 ACCCTAA
*
4951 ACCCTGA
1 ACCCTAA
*
4958 ACCC-GA
1 ACCCTAA
*
4964 A-CCTGA
1 ACCCTAA
*
4970 ACCCTGA
1 ACCCTAA
*
4977 ACCCTGA
1 ACCCTAA
*
4984 ACCCTGA
1 ACCCTAA
*
4991 ACCCTGA
1 ACCCTAA
*
4998 ACCCTGA
1 ACCCTAA
*
5005 ACCCTGA
1 ACCCTAA
*
5012 ACCCTGA
1 ACCCTAA
*
5019 ACCCTGA
1 ACCCTAA
*
5026 ACCCTGA
1 ACCCTAA
*
5033 ACCCTGA
1 ACCCTAA
*
5040 A-CCTGA
1 ACCCTAA
*
5046 A-CCTGA
1 ACCCTAA
*
5052 ACCCTGA
1 ACCCTAA
*
5059 ACCCTGA
1 ACCCTAA
*
5066 ACCCTGA
1 ACCCTAA
*
5073 ACCCTGA
1 ACCCTAA
*
5080 ACCCTGA
1 ACCCTAA
*
5087 ACCC-GA
1 ACCCTAA
*
5093 ACCCTGA
1 ACCCTAA
*
5100 ACCCTGA
1 ACCCTAA
*
5107 A-CCTGA
1 ACCCTAA
*
5113 ACCCTGA
1 ACCCTAA
*
5120 ACCCTGA
1 ACCCTAA
*
5127 ACCCTGA
1 ACCCTAA
*
5134 ACCCTGA
1 ACCCTAA
*
5141 ACCCTGA
1 ACCCTAA
*
5148 ACCCTGA
1 ACCCTAA
*
5155 ACCCTGA
1 ACCCTAA
*
5162 A-CCTGA
1 ACCCTAA
*
5168 ACCCTGA
1 ACCCTAA
*
5175 ACCCTGA
1 ACCCTAA
*
5182 ACCCTGA
1 ACCCTAA
*
5189 ACCCTGA
1 ACCCTAA
*
5196 ACCCTGA
1 ACCCTAA
*
5203 ACCCTGA
1 ACCCTAA
*
5210 ACCCTGA
1 ACCCTAA
*
5217 ACCCTGA
1 ACCCTAA
*
5224 ACCCTGA
1 ACCCTAA
*
5231 ACCCTGA
1 ACCCTAA
*
5238 ACCCTGA
1 ACCCTAA
*
5245 ACCCTGA
1 ACCCTAA
*
5252 ACCCTGA
1 ACCCTAA
*
5259 ACCCTGA
1 ACCCTAA
*
5266 ACCCTGA
1 ACCCTAA
*
5273 ACCCTGA
1 ACCCTAA
*
5280 A-CCTGA
1 ACCCTAA
*
5286 ACCCTTGA
1 ACCC-TAA
*
5294 ACCCTGA
1 ACCCTAA
*
5301 ACCCTGA
1 ACCCTAA
*
5308 ACCCTGA
1 ACCCTAA
*
5315 ACCCTGA
1 ACCCTAA
*
5322 ACCCTGA
1 ACCCTAA
*
5329 ACCCTGA
1 ACCCTAA
*
5336 ACCCTGA
1 ACCCTAA
*
5343 ACCCTGA
1 ACCCTAA
*
5350 ACCCTGA
1 ACCCTAA
*
5357 ACCCTGA
1 ACCCTAA
*
5364 ACCCTGA
1 ACCCTAA
*
5371 ACCCTGA
1 ACCCTAA
*
5378 ACCCTGA
1 ACCCTAA
*
5385 ACCCTGA
1 ACCCTAA
*
5392 ACCCTGA
1 ACCCTAA
*
5399 A-CCTGA
1 ACCCTAA
*
5405 ACCCTGA
1 ACCCTAA
*
5412 ACCCTGA
1 ACCCTAA
*
5419 ACCCTGA
1 ACCCTAA
*
5426 ACCCTGA
1 ACCCTAA
*
5433 A-CCTGA
1 ACCCTAA
*
5439 ACCCTGA
1 ACCCTAA
*
5446 ACCCTGA
1 ACCCTAA
*
5453 ACCCTGA
1 ACCCTAA
*
5460 ACCCTGA
1 ACCCTAA
*
5467 ACCCTGA
1 ACCCTAA
*
5474 ACCCTGA
1 ACCCTAA
*
5481 A-CCTGA
1 ACCCTAA
*
5487 ACCCT-G
1 ACCCTAA
*
5493 ACCCTGA
1 ACCCTAA
*
5500 ACCCTGA
1 ACCCTAA
*
5507 A-CCTGA
1 ACCCTAA
*
5513 ACCCTGA
1 ACCCTAA
*
5520 ACCCTGA
1 ACCCTAA
*
5527 ACCCTGA
1 ACCCTAA
*
5534 A-CCTGA
1 ACCCTAA
*
5540 ACCCTGA
1 ACCCTAA
*
5547 ACCCTGA
1 ACCCTAA
*
5554 ACCCTGA
1 ACCCTAA
*
5561 A-CCTGA
1 ACCCTAA
*
5567 ACCCTGA
1 ACCCTAA
*
5574 ACCCTGA
1 ACCCTAA
*
5581 ACCCTGA
1 ACCCTAA
*
5588 ACCCTGA
1 ACCCTAA
*
5595 A-CCTGA
1 ACCCTAA
*
5601 ACCCTGA
1 ACCCTAA
*
5608 ACCCTGA
1 ACCCTAA
*
5615 ACCCTGA
1 ACCCTAA
*
5622 ACCCTGA
1 ACCCTAA
*
5629 ACCCTGA
1 ACCCTAA
*
5636 ACCCTGA
1 ACCCTAA
*
5643 ACCCTGA
1 ACCCTAA
*
5650 A-CCTGA
1 ACCCTAA
*
5656 ACCCTGA
1 ACCCTAA
*
5663 ACCCTGA
1 ACCCTAA
*
5670 ACCCTGA
1 ACCCTAA
*
5677 ACCCTGA
1 ACCCTAA
*
5684 ACCCTGA
1 ACCCTAA
*
5691 ACCCTGA
1 ACCCTAA
*
5698 ACCCTGA
1 ACCCTAA
*
5705 ACCCTGA
1 ACCCTAA
*
5712 ACCCTGA
1 ACCCTAA
*
5719 ACCCTGA
1 ACCCTAA
*
5726 A-CCTGA
1 ACCCTAA
*
5732 ACCCTGA
1 ACCCTAA
*
5739 ACCCTGA
1 ACCCTAA
*
5746 ACCCTGA
1 ACCCTAA
*
5753 ACCCTGA
1 ACCCTAA
*
5760 ACCCTGA
1 ACCCTAA
*
5767 ACCCT-G
1 ACCCTAA
*
5773 ACCCTGA
1 ACCCTAA
*
5780 ACCCTGA
1 ACCCTAA
*
5787 ACCCTGA
1 ACCCTAA
*
5794 ACCCTGA
1 ACCCTAA
*
5801 ACCCTGA
1 ACCCTAA
*
5808 ACCCTGA
1 ACCCTAA
*
5815 ACCCTGA
1 ACCCTAA
*
5822 ACCCTGA
1 ACCCTAA
*
5829 ACCCTGA
1 ACCCTAA
*
5836 ACCCTGA
1 ACCCTAA
*
5843 ACCCTGA
1 ACCCTAA
*
5850 ACCCTGA
1 ACCCTAA
*
5857 ACCCTGA
1 ACCCTAA
*
5864 ACCCTGA
1 ACCCTAA
*
5871 ACCCTGA
1 ACCCTAA
*
5878 ACCCTGA
1 ACCCTAA
*
5885 ACCCTGA
1 ACCCTAA
*
5892 ACCCTGA
1 ACCCTAA
*
5899 ACCCTGA
1 ACCCTAA
*
5906 A-CCTGA
1 ACCCTAA
*
5912 ACCCTGA
1 ACCCTAA
*
5919 ACCCTGA
1 ACCCTAA
*
5926 ACCC-GA
1 ACCCTAA
*
5932 ACCCTGA
1 ACCCTAA
*
5939 ACCCTGA
1 ACCCTAA
*
5946 ACCCTGA
1 ACCCTAA
*
5953 ACCCTGA
1 ACCCTAA
*
5960 ACCCTGA
1 ACCCTAA
*
5967 ACCCTGA
1 ACCCTAA
*
5974 A-CCTGA
1 ACCCTAA
*
5980 ACCCTGA
1 ACCCTAA
*
5987 ACCCTGA
1 ACCCTAA
*
5994 ACCCTGA
1 ACCCTAA
*
6001 ACCCTGA
1 ACCCTAA
*
6008 ACCCTGA
1 ACCCTAA
*
6015 ACCCTGA
1 ACCCTAA
*
6022 ACCCTGA
1 ACCCTAA
*
6029 ACCCTGA
1 ACCCTAA
*
6036 ACCCTGA
1 ACCCTAA
*
6043 ACCCTGA
1 ACCCTAA
*
6050 ACCCTGA
1 ACCCTAA
*
6057 ACCCTGA
1 ACCCTAA
*
6064 ACCCTGA
1 ACCCTAA
*
6071 A-CCTGA
1 ACCCTAA
*
6077 ACCCTGA
1 ACCCTAA
*
6084 ACCCTGA
1 ACCCTAA
*
6091 ACCCTGA
1 ACCCTAA
*
6098 ACCCTGA
1 ACCCTAA
*
6105 ACCCTGA
1 ACCCTAA
*
6112 ACCCTGA
1 ACCCTAA
*
6119 ACCCTGA
1 ACCCTAA
*
6126 ACCCTGA
1 ACCCTAA
*
6133 ACCCTGA
1 ACCCTAA
*
6140 ACCCTGA
1 ACCCTAA
*
6147 ACCCT-G
1 ACCCTAA
*
6153 ACCCTGA
1 ACCCTAA
*
6160 ACCCTGA
1 ACCCTAA
*
6167 ACCCTGA
1 ACCCTAA
*
6174 ACCCTGA
1 ACCCTAA
*
6181 ACCCTGA
1 ACCCTAA
*
6188 ACCTGCTGA
1 ACC--CTAA
*
6197 ACCCTGA
1 ACCCTAA
*
6204 ACCCTGA
1 ACCCTAA
*
6211 ACCCTGA
1 ACCCTAA
*
6218 ACCCTGA
1 ACCCTAA
*
6225 ACCCTGA
1 ACCCTAA
*
6232 ACCCTGA
1 ACCCTAA
*
6239 ACCCTGA
1 ACCCTAA
*
6246 ACCCTGA
1 ACCCTAA
*
6253 ACCCTGA
1 ACCCTAA
*
6260 ACCCTGA
1 ACCCTAA
*
6267 ACCCTGA
1 ACCCTAA
*
6274 ACCCTGA
1 ACCCTAA
*
6281 ACCCTGA
1 ACCCTAA
*
6288 ACCCTGA
1 ACCCTAA
*
6295 ACCCTGA
1 ACCCTAA
*
6302 ACCCTGA
1 ACCCTAA
*
6309 ACCC-GA
1 ACCCTAA
*
6315 ACCCTGA
1 ACCCTAA
*
6322 A-CCTGA
1 ACCCTAA
*
6328 ACCCTGA
1 ACCCTAA
*
6335 ACCCTGA
1 ACCCTAA
*
6342 ACCCTGA
1 ACCCTAA
*
6349 ACCCTGA
1 ACCCTAA
*
6356 A-CCTGA
1 ACCCTAA
*
6362 A--CTGA
1 ACCCTAA
*
6367 ACCCTGA
1 ACCCTAA
*
6374 ACCCTGA
1 ACCCTAA
*
6381 ACCCTGA
1 ACCCTAA
*
6388 ACCCTGA
1 ACCCTAA
*
6395 ACCCTGA
1 ACCCTAA
*
6402 ACCCTGA
1 ACCCTAA
*
6409 ACCCTGA
1 ACCCTAA
*
6416 ACCCTGA
1 ACCCTAA
*
6423 ACCCTGA
1 ACCCTAA
*
6430 ACCCTGA
1 ACCCTAA
*
6437 ACCCTGA
1 ACCCTAA
*
6444 ACCCTGA
1 ACCCTAA
*
6451 ACCCTGA
1 ACCCTAA
*
6458 ACCCTGA
1 ACCCTAA
*
6465 ACCCTGA
1 ACCCTAA
*
6472 ACCCTGA
1 ACCCTAA
*
6479 ACCCTGA
1 ACCCTAA
*
6486 ACCCTGA
1 ACCCTAA
*
6493 ACCCTGA
1 ACCCTAA
*
6500 ACCCTGA
1 ACCCTAA
*
6507 ACCCTGA
1 ACCCTAA
*
6514 ACCCTGA
1 ACCCTAA
*
6521 ACCCTGA
1 ACCCTAA
*
6528 ACCCTGA
1 ACCCTAA
*
6535 A-CCTGA
1 ACCCTAA
*
6541 ACCCTGA
1 ACCCTAA
*
6548 ACCCTGA
1 ACCCTAA
*
6555 ACCCTGA
1 ACCCTAA
*
6562 ACCCTGA
1 ACCCTAA
*
6569 ACCCTGA
1 ACCCTAA
*
6576 ACCCTGA
1 ACCCTAA
*
6583 ACCCTGA
1 ACCCTAA
*
6590 ACCCTGA
1 ACCCTAA
6597 ACC
1 ACC
6600 TGAACTGAAC
Statistics
Matches: 6269, Mismatches: 92, Indels: 462
0.92 0.01 0.07
Matches are distributed among these distances:
4 10 0.00
5 92 0.01
6 971 0.15
7 5046 0.80
8 118 0.02
9 32 0.01
ACGTcount: A:0.37, C:0.43, G:0.06, T:0.14
Consensus pattern (7 bp):
ACCCTAA
Found at i:7641 original size:10 final size:11
Alignment explanation
Indices: 7578--7659 Score: 56
Period size: 14 Copynumber: 6.4 Consensus size: 11
7568 CGAACCCGAA
7578 CCCCGAACCCC
1 CCCCGAACCCC
7589 GAACCCCGAACCCC
1 ---CCCCGAACCCC
7603 GAACCCCGAACCCC
1 ---CCCCGAACCCC
7617 GAACCCCGAACCCC
1 ---CCCCGAACCCC
7631 CCCCGAACCCC
1 CCCCGAACCCC
7642 GAACCCCGAACCCC
1 ---CCCCGAACCCC
7656 CCCC
1 CCCC
7660 CCCCCCCCCC
Statistics
Matches: 65, Mismatches: 0, Indels: 9
0.88 0.00 0.12
Matches are distributed among these distances:
11 15 0.23
14 50 0.77
ACGTcount: A:0.24, C:0.63, G:0.12, T:0.00
Consensus pattern (11 bp):
CCCCGAACCCC
Found at i:7649 original size:7 final size:7
Alignment explanation
Indices: 19--7629 Score: 7623
Period size: 7 Copynumber: 1123.6 Consensus size: 7
9 CCCTAAACCC
*
19 ACCCTAA
1 ACCCTGA
*
26 ACCCTAA
1 ACCCTGA
*
33 ACCCTAA
1 ACCCTGA
*
40 ACCCTAA
1 ACCCTGA
*
47 ACCCTAA
1 ACCCTGA
54 ACCCT-A
1 ACCCTGA
*
60 ACCCTAA
1 ACCCTGA
*
67 ACCCTAA
1 ACCCTGA
*
74 ACCCTAA
1 ACCCTGA
*
81 ACCCTAA
1 ACCCTGA
*
88 ACCCTAAA
1 ACCCT-GA
*
96 ACCCTAA
1 ACCCTGA
*
103 ACCCTAA
1 ACCCTGA
* *
110 AACCTAA
1 ACCCTGA
*
117 ACCCTAA
1 ACCCTGA
*
124 ACCCTAA
1 ACCCTGA
*
131 ACCCTAA
1 ACCCTGA
*
138 ACCCTAA
1 ACCCTGA
*
145 ACCCTAA
1 ACCCTGA
*
152 ACCCTAA
1 ACCCTGA
*
159 ACCCTAA
1 ACCCTGA
166 ACCCT-A
1 ACCCTGA
*
172 ACCCTAA
1 ACCCTGA
*
179 ACCCTAA
1 ACCCTGA
*
186 ACCCTAA
1 ACCCTGA
*
193 ACCCTAA
1 ACCCTGA
200 ACCCT-A
1 ACCCTGA
* *
206 AACCTAAA
1 ACCCT-GA
*
214 ACCCTAA
1 ACCCTGA
*
221 ACCCTAA
1 ACCCTGA
*
228 ACCCTAA
1 ACCCTGA
235 ACCCT-A
1 ACCCTGA
* *
241 AACCTAA
1 ACCCTGA
*
248 ACCCTAA
1 ACCCTGA
*
255 ACCCTAA
1 ACCCTGA
262 ACCCT-A
1 ACCCTGA
268 ACCCT-A
1 ACCCTGA
*
274 AACCT-A
1 ACCCTGA
*
280 ACCCTAA
1 ACCCTGA
287 ACCCT-A
1 ACCCTGA
* *
293 AACCTAA
1 ACCCTGA
*
300 ACCCTAA
1 ACCCTGA
*
307 ACCCTAA
1 ACCCTGA
*
314 ACCCTAA
1 ACCCTGA
*
321 ACCCTAA
1 ACCCTGA
*
328 ACCCTAA
1 ACCCTGA
335 ACCCT-A
1 ACCCTGA
* *
341 AACCTAA
1 ACCCTGA
*
348 ACCCTAA
1 ACCCTGA
*
355 ACCCTAA
1 ACCCTGA
362 ACCCT-A
1 ACCCTGA
* *
368 AACCTAA
1 ACCCTGA
*
375 ACCCTAA
1 ACCCTGA
*
382 ACCCTAA
1 ACCCTGA
389 ACCCT-A
1 ACCCTGA
* *
395 AACCTAA
1 ACCCTGA
*
402 ACCCTAA
1 ACCCTGA
409 ACCCT-A
1 ACCCTGA
415 ACCCT-A
1 ACCCTGA
* *
421 AACCTAA
1 ACCCTGA
428 ACCCT-A
1 ACCCTGA
*
434 AACCT-A
1 ACCCTGA
* *
440 AACCTAA
1 ACCCTGA
447 ACCCT-A
1 ACCCTGA
* *
453 AACCTAA
1 ACCCTGA
460 ACCCT-A
1 ACCCTGA
*
466 ACCCTAA
1 ACCCTGA
*
473 ACCCTAA
1 ACCCTGA
480 ACCCT-A
1 ACCCTGA
*
486 A-CC-AA
1 ACCCTGA
*
491 ACCCTAA
1 ACCCTGA
498 ACCCT-A
1 ACCCTGA
* *
504 AACCTAA
1 ACCCTGA
*
511 ACCCTAA
1 ACCCTGA
*
518 ACCCTAA
1 ACCCTGA
525 ACCCT-A
1 ACCCTGA
* *
531 AACCTAA
1 ACCCTGA
538 ACCCT-A
1 ACCCTGA
*
544 A--CTAA
1 ACCCTGA
549 ACCC-GAA
1 ACCCTG-A
*
556 ACCCTAA
1 ACCCTGA
*
563 ACCCTAA
1 ACCCTGA
*
570 ACCCTAA
1 ACCCTGA
*
577 ACCCTAA
1 ACCCTGA
*
584 ACCCTAA
1 ACCCTGA
*
591 ACCCTAA
1 ACCCTGA
598 ACCCT-A
1 ACCCTGA
* *
604 A-ACTAA
1 ACCCTGA
*
610 ACCCTAA
1 ACCCTGA
617 ACCCT-A
1 ACCCTGA
* *
623 AACCTAA
1 ACCCTGA
*
630 ACCCTAA
1 ACCCTGA
*
637 ACCCTAA
1 ACCCTGA
*
644 ACCCTAA
1 ACCCTGA
*
651 ACCCTAA
1 ACCCTGA
658 ACCCT-A
1 ACCCTGA
* *
664 AACCTAA
1 ACCCTGA
*
671 ACCCTAA
1 ACCCTGA
*
678 ACCCTAA
1 ACCCTGA
685 ACCCT-A
1 ACCCTGA
*
691 AACCT-A
1 ACCCTGA
*
697 ACCCTAAA
1 ACCCT-GA
*
705 ACCCTAA
1 ACCCTGA
*
712 ACCCTAA
1 ACCCTGA
719 ACCCT-A
1 ACCCTGA
* *
725 AACCTAAA
1 ACCCT-GA
*
733 ACCCTAA
1 ACCCTGA
*
740 ACCCTAA
1 ACCCTGA
*
747 ACCCTAA
1 ACCCTGA
*
754 ACCCTAA
1 ACCCTGA
*
761 ACCCTAA
1 ACCCTGA
*
768 ACCCTAA
1 ACCCTGA
*
775 ACCCTAA
1 ACCCTGA
*
782 ACCCTAA
1 ACCCTGA
*
789 ACCCTAAA
1 ACCCT-GA
*
797 ACCCTAA
1 ACCCTGA
*
804 ACCCTAA
1 ACCCTGA
**
811 ACCCAAA
1 ACCCTGA
*
818 ACCCTAA
1 ACCCTGA
*
825 ACCCTAA
1 ACCCTGA
832 ACCCT-A
1 ACCCTGA
* *
838 AACC-AA
1 ACCCTGA
844 ACCCT-A
1 ACCCTGA
*
850 ACCCTAA
1 ACCCTGA
* *
857 AACCTAA
1 ACCCTGA
*
864 ACCCTAA
1 ACCCTGA
*
871 ACCCTAA
1 ACCCTGA
*
878 ACCCTAA
1 ACCCTGA
*
885 ACCCTAA
1 ACCCTGA
892 ACCCT-A
1 ACCCTGA
*
898 ACCCTAA
1 ACCCTGA
*
905 ACCCTAA
1 ACCCTGA
*
912 ACCCTAA
1 ACCCTGA
*
919 ACCCTAA
1 ACCCTGA
*
926 ACCCTAA
1 ACCCTGA
*
933 ACCCTAA
1 ACCCTGA
*
940 ACCCTAA
1 ACCCTGA
*
947 ACCCTAA
1 ACCCTGA
*
954 ACCCTAAA
1 ACCCT-GA
*
962 ACCCTAAA
1 ACCCT-GA
*
970 ACCCTAA
1 ACCCTGA
*
977 ACCCTAA
1 ACCCTGA
*
984 ACCCTAA
1 ACCCTGA
991 ACCCT-A
1 ACCCTGA
*
997 ACCCTAA
1 ACCCTGA
*
1004 ACCCTAA
1 ACCCTGA
1011 ACCCT-A
1 ACCCTGA
*
1017 A-CCTAA
1 ACCCTGA
*
1023 ACCCTAA
1 ACCCTGA
*
1030 ACCCTAA
1 ACCCTGA
*
1037 ACCCTAA
1 ACCCTGA
1044 ACCC--A
1 ACCCTGA
*
1049 ACCCTAA
1 ACCCTGA
*
1056 ACCCTAA
1 ACCCTGA
*
1063 ACCCTAAA
1 ACCCT-GA
*
1071 ACCCTAA
1 ACCCTGA
*
1078 ACCCTAA
1 ACCCTGA
*
1085 ACCCTAA
1 ACCCTGA
1092 ACCCT-A
1 ACCCTGA
* *
1098 AACCTAA
1 ACCCTGA
*
1105 ACCCTAA
1 ACCCTGA
*
1112 ACCCTAA
1 ACCCTGA
1119 ACCCT-A
1 ACCCTGA
* *
1125 AACC-AA
1 ACCCTGA
*
1131 ACCCTAA
1 ACCCTGA
*
1138 ACCCTAA
1 ACCCTGA
1145 ACCCT-A
1 ACCCTGA
*
1151 ACCCTAA
1 ACCCTGA
*
1158 ACCCTACTA
1 ACCCT--GA
*
1167 ACCCTAA
1 ACCCTGA
*
1174 ACCCTAA
1 ACCCTGA
*
1181 ACCCTAA
1 ACCCTGA
*
1188 ACCCTAA
1 ACCCTGA
*
1195 ACCCTAA
1 ACCCTGA
*
1202 ACCCTAA
1 ACCCTGA
1209 ACCCT-A
1 ACCCTGA
*
1215 AACCT-A
1 ACCCTGA
* *
1221 AACCTAA
1 ACCCTGA
*
1228 ACCCTAA
1 ACCCTGA
*
1235 ACCCTAA
1 ACCCTGA
*
1242 ACCCTAA
1 ACCCTGA
*
1249 ACCCTAA
1 ACCCTGA
*
1256 ACCCTAA
1 ACCCTGA
*
1263 ACCCTAA
1 ACCCTGA
*
1270 ACCCTAA
1 ACCCTGA
*
1277 ACCCTAA
1 ACCCTGA
1284 ACCC-GAA
1 ACCCTG-A
*
1291 ACCCCCTAA
1 A--CCCTGA
*
1300 ACCCTAA
1 ACCCTGA
*
1307 ACCCTAA
1 ACCCTGA
1314 ACCCT-A
1 ACCCTGA
* *
1320 AACCTAA
1 ACCCTGA
*
1327 ACCCTAA
1 ACCCTGA
*
1334 ACCC-AA
1 ACCCTGA
*
1340 ACCCTAA
1 ACCCTGA
1347 ACCCT-A
1 ACCCTGA
* *
1353 AACCTAA
1 ACCCTGA
*
1360 ACCCTAA
1 ACCCTGA
*
1367 ACCCTAA
1 ACCCTGA
1374 ACCCT-A
1 ACCCTGA
*
1380 A-CCTAA
1 ACCCTGA
1386 ACCCT-A
1 ACCCTGA
*
1392 ACCCTAA
1 ACCCTGA
1399 ACCCT-A
1 ACCCTGA
1405 ACCC-GA
1 ACCCTGA
*
1411 AACCT-A
1 ACCCTGA
*
1417 ACCCTAA
1 ACCCTGA
*
1424 ACCCTAA
1 ACCCTGA
*
1431 ACCCTAA
1 ACCCTGA
*
1438 ACCCTAA
1 ACCCTGA
*
1445 ACCCTAA
1 ACCCTGA
*
1452 ACCCTAA
1 ACCCTGA
*
1459 ACCCTAA
1 ACCCTGA
*
1466 ACCCTAA
1 ACCCTGA
*
1473 ACCCTAA
1 ACCCTGA
**
1480 ACCCCAA
1 ACCCTGA
*
1487 ACCCTAA
1 ACCCTGA
*
1494 ACCC-AA
1 ACCCTGA
*
1500 ACCCTAA
1 ACCCTGA
*
1507 ACCCTAA
1 ACCCTGA
*
1514 ACCCTACA
1 ACCCT-GA
*
1522 ACCCTAA
1 ACCCTGA
*
1529 ACCCTAA
1 ACCCTGA
*
1536 ACCCTAA
1 ACCCTGA
*
1543 ACCCTAA
1 ACCCTGA
*
1550 ACCCTAA
1 ACCCTGA
*
1557 ACCCTAA
1 ACCCTGA
1564 ACCCT-A
1 ACCCTGA
*
1570 ACCC-AA
1 ACCCTGA
*
1576 ACCC-AA
1 ACCCTGA
*
1582 ACCCTAA
1 ACCCTGA
*
1589 ACCCTAA
1 ACCCTGA
1596 ACCCT-A
1 ACCCTGA
* *
1602 AACCTAA
1 ACCCTGA
*
1609 ACCCTAA
1 ACCCTGA
1616 ACCCT-A
1 ACCCTGA
* *
1622 AACCTAA
1 ACCCTGA
*
1629 ACCCTAA
1 ACCCTGA
*
1636 ACCCTAA
1 ACCCTGA
1643 ACCC-GAA
1 ACCCTG-A
*
1650 ACCCTAA
1 ACCCTGA
1657 ACCCT-A
1 ACCCTGA
*
1663 ACCCTAA
1 ACCCTGA
1670 ACCCT-A
1 ACCCTGA
*
1676 A-CCTAA
1 ACCCTGA
*
1682 ACCCTAA
1 ACCCTGA
*
1689 ACCCTAA
1 ACCCTGA
*
1696 ACCCTAA
1 ACCCTGA
*
1703 ACCCTAA
1 ACCCTGA
*
1710 ACCCTAA
1 ACCCTGA
*
1717 ACCCTAA
1 ACCCTGA
1724 ACCCT-A
1 ACCCTGA
*
1730 ACCCTAA
1 ACCCTGA
*
1737 ACCC-AA
1 ACCCTGA
*
1743 ACCCTAA
1 ACCCTGA
*
1750 ACCCTAA
1 ACCCTGA
*
1757 ACCCTAA
1 ACCCTGA
*
1764 ACCCTAA
1 ACCCTGA
*
1771 ACCCTAA
1 ACCCTGA
1778 ACCCT-A
1 ACCCTGA
*
1784 ACCCTAA
1 ACCCTGA
*
1791 ACCCTAA
1 ACCCTGA
*
1798 ACCCTAA
1 ACCCTGA
*
1805 ACCCTAA
1 ACCCTGA
1812 ACCCT-A
1 ACCCTGA
* *
1818 AACCTAA
1 ACCCTGA
1825 ACCCT-A
1 ACCCTGA
*
1831 ACCCTAA
1 ACCCTGA
*
1838 ACCCTAA
1 ACCCTGA
1845 ACCCT-A
1 ACCCTGA
* *
1851 AACCTAA
1 ACCCTGA
*
1858 ACCCTAA
1 ACCCTGA
*
1865 ACCCTAA
1 ACCCTGA
*
1872 ACCCTAA
1 ACCCTGA
*
1879 ACCCTAA
1 ACCCTGA
*
1886 ACCCTAA
1 ACCCTGA
*
1893 ACCCTAA
1 ACCCTGA
1900 ACCCT-A
1 ACCCTGA
*
1906 ACCCTAA
1 ACCCTGA
1913 ACCCT-A
1 ACCCTGA
* *
1919 AACCTAA
1 ACCCTGA
*
1926 ACCCTAA
1 ACCCTGA
*
1933 ACCCTAA
1 ACCCTGA
*
1940 ACCCTAA
1 ACCCTGA
*
1947 ACCCTAA
1 ACCCTGA
1954 ACCCT-A
1 ACCCTGA
*
1960 ACCCTAA
1 ACCCTGA
*
1967 ACCCTAA
1 ACCCTGA
*
1974 ACCCTAA
1 ACCCTGA
*
1981 ACCCTAA
1 ACCCTGA
1988 ACCC--A
1 ACCCTGA
*
1993 ACCCTAA
1 ACCCTGA
*
2000 ACCCTAA
1 ACCCTGA
*
2007 ACCCTAA
1 ACCCTGA
*
2014 ACCCTAA
1 ACCCTGA
*
2021 ACCCTAA
1 ACCCTGA
2028 ACCCT-A
1 ACCCTGA
*
2034 ACCCTAA
1 ACCCTGA
*
2041 ACCCTAA
1 ACCCTGA
*
2048 ACCCTAA
1 ACCCTGA
*
2055 ACCCTAA
1 ACCCTGA
*
2062 ACCCTAA
1 ACCCTGA
*
2069 ACCCTAA
1 ACCCTGA
*
2076 ACCCTAA
1 ACCCTGA
*
2083 ACCCTAA
1 ACCCTGA
*
2090 ACCCTAA
1 ACCCTGA
2097 ACCCT-A
1 ACCCTGA
* *
2103 AACCTAA
1 ACCCTGA
*
2110 ACCCTAA
1 ACCCTGA
*
2117 ACCCTAA
1 ACCCTGA
*
2124 ACCCTAA
1 ACCCTGA
*
2131 ACCCTAA
1 ACCCTGA
*
2138 ACCCTAA
1 ACCCTGA
*
2145 ACCCTAA
1 ACCCTGA
2152 ACCCT-A
1 ACCCTGA
*
2158 ACCCTAA
1 ACCCTGA
*
2165 ACCCTAA
1 ACCCTGA
*
2172 ACCCTAA
1 ACCCTGA
*
2179 ACCCTAA
1 ACCCTGA
*
2186 ACCCTAA
1 ACCCTGA
*
2193 ACCCTAA
1 ACCCTGA
2200 ACCCT-A
1 ACCCTGA
2206 ACCCT-A
1 ACCCTGA
*
2212 ACCCTAA
1 ACCCTGA
*
2219 ACCCTAA
1 ACCCTGA
*
2226 ACCCTAA
1 ACCCTGA
*
2233 ACCCTAA
1 ACCCTGA
2240 ACCCT-A
1 ACCCTGA
*
2246 ACCCTAA
1 ACCCTGA
2253 ACCCT-A
1 ACCCTGA
*
2259 ACCCTAA
1 ACCCTGA
*
2266 ACCCTAA
1 ACCCTGA
2273 ACCCT-A
1 ACCCTGA
*
2279 ACCCTAA
1 ACCCTGA
*
2286 ACCCTAA
1 ACCCTGA
2293 ACCCT-A
1 ACCCTGA
*
2299 AACCT-A
1 ACCCTGA
*
2305 ACCC-AA
1 ACCCTGA
*
2311 ACCCTAA
1 ACCCTGA
2318 ACCCT-A
1 ACCCTGA
*
2324 ACCCTAA
1 ACCCTGA
*
2331 ACCCTAA
1 ACCCTGA
*
2338 ACCCTAA
1 ACCCTGA
*
2345 ACCCTAA
1 ACCCTGA
*
2352 ACCCTAA
1 ACCCTGA
2359 ACCCT-A
1 ACCCTGA
*
2365 ACCCTAA
1 ACCCTGA
2372 ACCCT-A
1 ACCCTGA
2378 ACCCT-A
1 ACCCTGA
*
2384 ACCCTAA
1 ACCCTGA
*
2391 ACCCTCTAA
1 A-CC-CTGA
*
2400 ACCCTAA
1 ACCCTGA
*
2407 ACCCTAA
1 ACCCTGA
2414 ACCCT-A
1 ACCCTGA
*
2420 AACCT-A
1 ACCCTGA
*
2426 ACCCTAA
1 ACCCTGA
2433 ACCCT-A
1 ACCCTGA
*
2439 ACCC-AA
1 ACCCTGA
*
2445 ACCCTAA
1 ACCCTGA
2452 ACCCT-A
1 ACCCTGA
*
2458 AACCT-A
1 ACCCTGA
2464 ACCCT-A
1 ACCCTGA
*
2470 ACCCTAAA
1 ACCCT-GA
*
2478 ACCCTAA
1 ACCCTGA
*
2485 ACCCTAA
1 ACCCTGA
*
2492 ACCCTAA
1 ACCCTGA
*
2499 ACCCTAA
1 ACCCTGA
*
2506 ACCCTAA
1 ACCCTGA
*
2513 ACCCTAA
1 ACCCTGA
2520 ACCCT-A
1 ACCCTGA
* *
2526 AACCTAA
1 ACCCTGA
*
2533 ACCCTAAA
1 ACCCT-GA
*
2541 ACCCTAA
1 ACCCTGA
*
2548 ACCCTAA
1 ACCCTGA
2555 ACCCT-A
1 ACCCTGA
2561 ACCCT-A
1 ACCCTGA
* *
2567 AACCTAA
1 ACCCTGA
2574 ACCCT-A
1 ACCCTGA
*
2580 ACCCTAA
1 ACCCTGA
*
2587 ACCCTAA
1 ACCCTGA
*
2594 ACCCTAA
1 ACCCTGA
2601 ACCCT-A
1 ACCCTGA
* *
2607 AACCTAAA
1 ACCCT-GA
*
2615 ACCCTAA
1 ACCCTGA
*
2622 ACCCTAA
1 ACCCTGA
*
2629 ACCCTAA
1 ACCCTGA
*
2636 ACCCTAAA
1 ACCCT-GA
*
2644 ACCCTAA
1 ACCCTGA
*
2651 ACCCTAA
1 ACCCTGA
*
2658 ACCCTAA
1 ACCCTGA
*
2665 ACCCTAA
1 ACCCTGA
*
2672 ACCCTAA
1 ACCCTGA
2679 ACCCT-A
1 ACCCTGA
*
2685 ACCCTAA
1 ACCCTGA
*
2692 ACCCTAA
1 ACCCTGA
2699 ACCCT-A
1 ACCCTGA
*
2705 ACCCTAA
1 ACCCTGA
*
2712 ACCCTAA
1 ACCCTGA
*
2719 ACCC-AA
1 ACCCTGA
*
2725 ACCCTAA
1 ACCCTGA
*
2732 ACCCTAA
1 ACCCTGA
2739 ACCCT-A
1 ACCCTGA
* *
2745 AACCTAA
1 ACCCTGA
*
2752 ACCCTAA
1 ACCCTGA
*
2759 ACCCTAA
1 ACCCTGA
2766 ACCCT-A
1 ACCCTGA
2772 ACCCT-A
1 ACCCTGA
*
2778 ACCCTAA
1 ACCCTGA
*
2785 ACCCTAA
1 ACCCTGA
*
2792 ACCCTAA
1 ACCCTGA
*
2799 ACCCTAA
1 ACCCTGA
*
2806 ACCCTAA
1 ACCCTGA
*
2813 ACCCTAA
1 ACCCTGA
*
2820 ACCCTAA
1 ACCCTGA
*
2827 ACCCTAA
1 ACCCTGA
*
2834 ACCCTAA
1 ACCCTGA
*
2841 ACCCTAA
1 ACCCTGA
*
2848 ACCCTAA
1 ACCCTGA
2855 ACCCT-A
1 ACCCTGA
* *
2861 AACCTAA
1 ACCCTGA
*
2868 ACCCTAA
1 ACCCTGA
*
2875 ACCCTAA
1 ACCCTGA
2882 ACCCT-A
1 ACCCTGA
*
2888 ACCCTAA
1 ACCCTGA
*
2895 ACCCTAA
1 ACCCTGA
2902 ACCCT-A
1 ACCCTGA
*
2908 ACCCTAA
1 ACCCTGA
*
2915 ACCCTAA
1 ACCCTGA
*
2922 ACCCTAA
1 ACCCTGA
2929 ACCCT-A
1 ACCCTGA
*
2935 ACCCTAA
1 ACCCTGA
*
2942 ACCCTAA
1 ACCCTGA
*
2949 ACCCTAA
1 ACCCTGA
*
2956 ACCCTAA
1 ACCCTGA
*
2963 ACCCTAA
1 ACCCTGA
*
2970 ACCCTAA
1 ACCCTGA
*
2977 ACCCTAA
1 ACCCTGA
*
2984 ACCCTAA
1 ACCCTGA
*
2991 ACCCTAA
1 ACCCTGA
*
2998 ACCCTAA
1 ACCCTGA
*
3005 ACCCTAA
1 ACCCTGA
*
3012 ACCCTAAA
1 ACCCT-GA
3020 ACCCT-A
1 ACCCTGA
*
3026 ACCCTAA
1 ACCCTGA
3033 ACCCT-A
1 ACCCTGA
*
3039 ACCCTAA
1 ACCCTGA
*
3046 ACCC-AA
1 ACCCTGA
*
3052 ACCCTAA
1 ACCCTGA
3059 ACCCT-A
1 ACCCTGA
*
3065 ACCCTAA
1 ACCCTGA
*
3072 ACCCTAA
1 ACCCTGA
*
3079 ACCCTAA
1 ACCCTGA
*
3086 ACCCTAA
1 ACCCTGA
3093 ACCCT-A
1 ACCCTGA
*
3099 ACCCTAA
1 ACCCTGA
*
3106 ACCCTAA
1 ACCCTGA
*
3113 ACCCTAA
1 ACCCTGA
*
3120 ACCCTAA
1 ACCCTGA
*
3127 ACCCTAA
1 ACCCTGA
*
3134 ACCCTAA
1 ACCCTGA
*
3141 ACCCTAA
1 ACCCTGA
3148 ACCC-GA
1 ACCCTGA
*
3154 ACCCTAA
1 ACCCTGA
*
3161 ACCCTAA
1 ACCCTGA
*
3168 ACCCTAA
1 ACCCTGA
*
3175 ACCCTAA
1 ACCCTGA
*
3182 ACCCTAA
1 ACCCTGA
3189 ACCCT-A
1 ACCCTGA
*
3195 ACCCTAA
1 ACCCTGA
*
3202 ACCCTAA
1 ACCCTGA
3209 ACCCTGA
1 ACCCTGA
*
3216 ACCCTAA
1 ACCCTGA
3223 ACCCT-A
1 ACCCTGA
3229 ACCCT-A
1 ACCCTGA
3235 ACCCT-A
1 ACCCTGA
*
3241 ACCCTAA
1 ACCCTGA
*
3248 ACCCTAA
1 ACCCTGA
*
3255 ACCCTAA
1 ACCCTGA
*
3262 ACCC-AA
1 ACCCTGA
*
3268 ACCCTAA
1 ACCCTGA
*
3275 ACCCTAA
1 ACCCTGA
*
3282 ACCCTAA
1 ACCCTGA
3289 ACCCT-A
1 ACCCTGA
*
3295 AACCT-A
1 ACCCTGA
3301 ACCC-GAA
1 ACCCTG-A
*
3308 ACCCTAA
1 ACCCTGA
3315 ACCCTGAAA
1 ACCCTG--A
*
3324 ACCCTAA
1 ACCCTGA
*
3331 ACCCTAA
1 ACCCTGA
*
3338 ACCCTAA
1 ACCCTGA
*
3345 ACCCTAA
1 ACCCTGA
3352 ACCCTGA
1 ACCCTGA
*
3359 ACCCTAA
1 ACCCTGA
*
3366 ACCCTAA
1 ACCCTGA
*
3373 ACCCTAA
1 ACCCTGA
*
3380 ACCCTAA
1 ACCCTGA
3387 ACCCT-A
1 ACCCTGA
*
3393 A-CCTAA
1 ACCCTGA
*
3399 ACCCTAA
1 ACCCTGA
*
3406 ACCCTAA
1 ACCCTGA
3413 ACCCT-A
1 ACCCTGA
*
3419 ACCCTAA
1 ACCCTGA
3426 ACCCTGA
1 ACCCTGA
*
3433 A-CCTAA
1 ACCCTGA
3439 ACCCTGA
1 ACCCTGA
3446 ACCC---
1 ACCCTGA
*
3450 ACCCTAA
1 ACCCTGA
3457 ACCC-GA
1 ACCCTGA
*
3463 A-CCTAA
1 ACCCTGA
3469 ACCCTGA
1 ACCCTGA
*
3476 ACCCTAA
1 ACCCTGA
*
3483 ACCCTAA
1 ACCCTGA
*
3490 ACCCTAA
1 ACCCTGA
*
3497 ACCCTAA
1 ACCCTGA
*
3504 ACCCTAA
1 ACCCTGA
3511 ACCCT-A
1 ACCCTGA
*
3517 AACCTGA
1 ACCCTGA
3524 ACCCTGA
1 ACCCTGA
3531 ACCCTGA
1 ACCCTGA
*
3538 ACCCTAA
1 ACCCTGA
3545 ACCCTGA
1 ACCCTGA
*
3552 ACCCTAA
1 ACCCTGA
3559 ACCCTGAA
1 ACCCTG-A
*
3567 ACCCTAA
1 ACCCTGA
3574 ACCCTGA
1 ACCCTGA
*
3581 ACCCTAA
1 ACCCTGA
3588 ACCCT-A
1 ACCCTGA
*
3594 ACCCTAA
1 ACCCTGA
3601 ACCCTGA
1 ACCCTGA
3608 ACCCTGA
1 ACCCTGA
*
3615 ACCCTAA
1 ACCCTGA
3622 ACCC--A
1 ACCCTGA
*
3627 ACCCTAA
1 ACCCTGA
3634 ACCCT-A
1 ACCCTGA
3640 A-CCTGA
1 ACCCTGA
3646 ACCCTGA
1 ACCCTGA
3653 ACCCTGA
1 ACCCTGA
*
3660 ACCCTAA
1 ACCCTGA
3667 ACCCT-A
1 ACCCTGA
3673 ACCCTGA
1 ACCCTGA
3680 ACCCTGA
1 ACCCTGA
*
3687 ACCCTAA
1 ACCCTGA
3694 ACCCT-A
1 ACCCTGA
*
3700 AACCTGA
1 ACCCTGA
*
3707 ACCCTAA
1 ACCCTGA
*
3714 ACCCTAA
1 ACCCTGA
*
3721 ACCCTAA
1 ACCCTGA
3728 ACCCT-A
1 ACCCTGA
3734 A-CCTGA
1 ACCCTGA
3740 ACCCT-A
1 ACCCTGA
*
3746 AACCTGA
1 ACCCTGA
*
3753 ACCCTAA
1 ACCCTGA
*
3760 ACCCTAA
1 ACCCTGA
*
3767 ACCCTAA
1 ACCCTGA
*
3774 ACCCTAA
1 ACCCTGA
3781 ACCCTGA
1 ACCCTGA
3788 A-CCT-A
1 ACCCTGA
3793 ACCCTGA
1 ACCCTGA
3800 ACCCT-A
1 ACCCTGA
3806 ACCCT-A
1 ACCCTGA
* *
3812 AACCTAA
1 ACCCTGA
*
3819 ACCCTAA
1 ACCCTGA
*
3826 ACCCTAA
1 ACCCTGA
3833 ACCCTGA
1 ACCCTGA
*
3840 ACCC-AA
1 ACCCTGA
3846 ACCCTGA
1 ACCCTGA
3853 ACCCTGA
1 ACCCTGA
*
3860 ACCCTAA
1 ACCCTGA
*
3867 ACCC-AA
1 ACCCTGA
*
3873 ACCCTAA
1 ACCCTGA
3880 ACCCT-A
1 ACCCTGA
3886 ACCCT-A
1 ACCCTGA
* *
3892 AACCTAA
1 ACCCTGA
3899 ACCCTGA
1 ACCCTGA
*
3906 ACCCTAA
1 ACCCTGA
3913 ACCCTGA
1 ACCCTGA
3920 ACCCTGA
1 ACCCTGA
3927 A-CCT-A
1 ACCCTGA
*
3932 ACCCTAA
1 ACCCTGA
*
3939 ACCCTAA
1 ACCCTGA
*
3946 ACCCTAA
1 ACCCTGA
3953 ACCC-GA
1 ACCCTGA
*
3959 ACCCTAA
1 ACCCTGA
*
3966 ACCCTAA
1 ACCCTGA
*
3973 ACCCTAA
1 ACCCTGA
*
3980 ACCCTAA
1 ACCCTGA
3987 ACCC-GA
1 ACCCTGA
3993 ACCCTGA
1 ACCCTGA
4000 ACCCT-A
1 ACCCTGA
*
4006 ACCCTAA
1 ACCCTGA
*
4013 ACCCTAA
1 ACCCTGA
4020 ACCCTGA
1 ACCCTGA
4027 A--CTGA
1 ACCCTGA
*
4032 ACCCTAA
1 ACCCTGA
*
4039 ACCCTAA
1 ACCCTGA
4046 ACCCT-A
1 ACCCTGA
*
4052 ACCCTAA
1 ACCCTGA
4059 ACCCTGA
1 ACCCTGA
4066 ACCCTGA
1 ACCCTGA
4073 ACCCT-A
1 ACCCTGA
* *
4079 AACCTAA
1 ACCCTGA
4086 ACCCTGA
1 ACCCTGA
*
4093 ACCCTAA
1 ACCCTGA
*
4100 ACCCTAA
1 ACCCTGA
4107 ACCC-GAA
1 ACCCTG-A
4114 ACCCTGA
1 ACCCTGA
*
4121 ACCCTAA
1 ACCCTGA
4128 ACCCTGA
1 ACCCTGA
*
4135 ACCCTAA
1 ACCCTGA
4142 ACCCTGA
1 ACCCTGA
4149 ACCCTGA
1 ACCCTGA
*
4156 ACCCTAA
1 ACCCTGA
*
4163 ACCCTAA
1 ACCCTGA
*
4170 ACCCTAA
1 ACCCTGA
4177 ACCCTGA
1 ACCCTGA
4184 ACCC--A
1 ACCCTGA
4189 ACCCTGA
1 ACCCTGA
4196 ACCCTGA
1 ACCCTGA
4203 ACCCTGA
1 ACCCTGA
4210 ACCCCTGA
1 A-CCCTGA
4218 ACCCTG-
1 ACCCTGA
4224 ACCCTGA
1 ACCCTGA
4231 ACCCTGA
1 ACCCTGA
4238 ACCCTGA
1 ACCCTGA
4245 ACCCCTGA
1 A-CCCTGA
4253 ACCCTGA
1 ACCCTGA
4260 ACCCTGA
1 ACCCTGA
4267 ACCCTGA
1 ACCCTGA
4274 ACCCTGA
1 ACCCTGA
4281 ACCCTGA
1 ACCCTGA
4288 ACCCTGA
1 ACCCTGA
4295 ACCCCTGA
1 A-CCCTGA
4303 ACCCTGA
1 ACCCTGA
4310 ACCCTGA
1 ACCCTGA
4317 ACCCTGA
1 ACCCTGA
4324 ACCCTGA
1 ACCCTGA
4331 ACCCTGA
1 ACCCTGA
4338 ACCCTGA
1 ACCCTGA
4345 ACCCTGA
1 ACCCTGA
4352 ACCCTGA
1 ACCCTGA
4359 ACCCTGA
1 ACCCTGA
4366 ACCCTGA
1 ACCCTGA
4373 ACCCTGA
1 ACCCTGA
4380 ACCCTGA
1 ACCCTGA
4387 ACCC-GA
1 ACCCTGA
4393 ACCCTGA
1 ACCCTGA
4400 ACCCTGA
1 ACCCTGA
4407 ACCCTGA
1 ACCCTGA
4414 ACCCTGA
1 ACCCTGA
4421 ACCCTGA
1 ACCCTGA
4428 A-CCTGA
1 ACCCTGA
4434 ACCCTGA
1 ACCCTGA
4441 ACCCTGA
1 ACCCTGA
4448 ACCCTGA
1 ACCCTGA
4455 ACCCTGA
1 ACCCTGA
4462 A-CCTGA
1 ACCCTGA
4468 ACCCTGA
1 ACCCTGA
4475 ACCCTGA
1 ACCCTGA
4482 ACCCTGA
1 ACCCTGA
4489 A-CCTGA
1 ACCCTGA
4495 ACCCTGA
1 ACCCTGA
4502 ACCCTGA
1 ACCCTGA
4509 ACCCTGA
1 ACCCTGA
4516 ACCCTGA
1 ACCCTGA
4523 ACCCTGA
1 ACCCTGA
4530 A-CC-GA
1 ACCCTGA
4535 A-CCTGA
1 ACCCTGA
4541 ACCCTGA
1 ACCCTGA
4548 ACCCTGA
1 ACCCTGA
4555 ACCCTGA
1 ACCCTGA
4562 ACCCTGA
1 ACCCTGA
4569 ACCCTGA
1 ACCCTGA
4576 ACCCTGA
1 ACCCTGA
4583 A-CCTGA
1 ACCCTGA
4589 ACCCTGA
1 ACCCTGA
4596 ACCCTGA
1 ACCCTGA
4603 ACCCTGA
1 ACCCTGA
4610 ACCCTGA
1 ACCCTGA
4617 ACCCTGA
1 ACCCTGA
4624 A-CCTGA
1 ACCCTGA
4630 ACCCTGA
1 ACCCTGA
4637 ACCCTGA
1 ACCCTGA
4644 ACCCTGA
1 ACCCTGA
4651 ACCCTGA
1 ACCCTGA
4658 ACCCTGA
1 ACCCTGA
4665 ACCCTGA
1 ACCCTGA
4672 ACCCTGA
1 ACCCTGA
4679 A-CCTGA
1 ACCCTGA
4685 ACCCTGA
1 ACCCTGA
4692 ACCCTGA
1 ACCCTGA
4699 ACCCTGA
1 ACCCTGA
4706 A-CCTGA
1 ACCCTGA
4712 A-CCTGA
1 ACCCTGA
4718 ACCCTGA
1 ACCCTGA
4725 ACCCTGA
1 ACCCTGA
4732 ACCCTGA
1 ACCCTGA
4739 ACCCTGA
1 ACCCTGA
4746 ACCCTGA
1 ACCCTGA
4753 ACCCTGA
1 ACCCTGA
4760 ACCCTGA
1 ACCCTGA
4767 ACCCTGA
1 ACCCTGA
4774 ACCCTGA
1 ACCCTGA
4781 ACCCTGA
1 ACCCTGA
4788 A-CCTGA
1 ACCCTGA
4794 ACCCTGA
1 ACCCTGA
4801 ACCCTGA
1 ACCCTGA
4808 ACCCTGA
1 ACCCTGA
4815 ACCCTGA
1 ACCCTGA
4822 ACCCTGA
1 ACCCTGA
4829 ACCCTGA
1 ACCCTGA
4836 ACCCTGA
1 ACCCTGA
4843 ACCCTGA
1 ACCCTGA
4850 ACCCTGA
1 ACCCTGA
4857 A-CCTGA
1 ACCCTGA
4863 ACCCTGA
1 ACCCTGA
4870 A-CCTGA
1 ACCCTGA
4876 ACCCTGA
1 ACCCTGA
4883 ACCCTGA
1 ACCCTGA
4890 ACCCTGA
1 ACCCTGA
4897 ACCCTGA
1 ACCCTGA
4904 ACCCTGA
1 ACCCTGA
4911 A-CCTGA
1 ACCCTGA
4917 ACCCTGA
1 ACCCTGA
4924 A-CCTGA
1 ACCCTGA
4930 ACCCTGA
1 ACCCTGA
4937 ACCCTGA
1 ACCCTGA
4944 ACCCTGA
1 ACCCTGA
4951 ACCCTGA
1 ACCCTGA
4958 ACCC-GA
1 ACCCTGA
4964 A-CCTGA
1 ACCCTGA
4970 ACCCTGA
1 ACCCTGA
4977 ACCCTGA
1 ACCCTGA
4984 ACCCTGA
1 ACCCTGA
4991 ACCCTGA
1 ACCCTGA
4998 ACCCTGA
1 ACCCTGA
5005 ACCCTGA
1 ACCCTGA
5012 ACCCTGA
1 ACCCTGA
5019 ACCCTGA
1 ACCCTGA
5026 ACCCTGA
1 ACCCTGA
5033 ACCCTGA
1 ACCCTGA
5040 A-CCTGA
1 ACCCTGA
5046 A-CCTGA
1 ACCCTGA
5052 ACCCTGA
1 ACCCTGA
5059 ACCCTGA
1 ACCCTGA
5066 ACCCTGA
1 ACCCTGA
5073 ACCCTGA
1 ACCCTGA
5080 ACCCTGA
1 ACCCTGA
5087 ACCC-GA
1 ACCCTGA
5093 ACCCTGA
1 ACCCTGA
5100 ACCCTGA
1 ACCCTGA
5107 A-CCTGA
1 ACCCTGA
5113 ACCCTGA
1 ACCCTGA
5120 ACCCTGA
1 ACCCTGA
5127 ACCCTGA
1 ACCCTGA
5134 ACCCTGA
1 ACCCTGA
5141 ACCCTGA
1 ACCCTGA
5148 ACCCTGA
1 ACCCTGA
5155 ACCCTGA
1 ACCCTGA
5162 A-CCTGA
1 ACCCTGA
5168 ACCCTGA
1 ACCCTGA
5175 ACCCTGA
1 ACCCTGA
5182 ACCCTGA
1 ACCCTGA
5189 ACCCTGA
1 ACCCTGA
5196 ACCCTGA
1 ACCCTGA
5203 ACCCTGA
1 ACCCTGA
5210 ACCCTGA
1 ACCCTGA
5217 ACCCTGA
1 ACCCTGA
5224 ACCCTGA
1 ACCCTGA
5231 ACCCTGA
1 ACCCTGA
5238 ACCCTGA
1 ACCCTGA
5245 ACCCTGA
1 ACCCTGA
5252 ACCCTGA
1 ACCCTGA
5259 ACCCTGA
1 ACCCTGA
5266 ACCCTGA
1 ACCCTGA
5273 ACCCTGA
1 ACCCTGA
5280 A-CCTGA
1 ACCCTGA
5286 ACCCTTGA
1 ACCC-TGA
5294 ACCCTGA
1 ACCCTGA
5301 ACCCTGA
1 ACCCTGA
5308 ACCCTGA
1 ACCCTGA
5315 ACCCTGA
1 ACCCTGA
5322 ACCCTGA
1 ACCCTGA
5329 ACCCTGA
1 ACCCTGA
5336 ACCCTGA
1 ACCCTGA
5343 ACCCTGA
1 ACCCTGA
5350 ACCCTGA
1 ACCCTGA
5357 ACCCTGA
1 ACCCTGA
5364 ACCCTGA
1 ACCCTGA
5371 ACCCTGA
1 ACCCTGA
5378 ACCCTGA
1 ACCCTGA
5385 ACCCTGA
1 ACCCTGA
5392 ACCCTGA
1 ACCCTGA
5399 A-CCTGA
1 ACCCTGA
5405 ACCCTGA
1 ACCCTGA
5412 ACCCTGA
1 ACCCTGA
5419 ACCCTGA
1 ACCCTGA
5426 ACCCTGA
1 ACCCTGA
5433 A-CCTGA
1 ACCCTGA
5439 ACCCTGA
1 ACCCTGA
5446 ACCCTGA
1 ACCCTGA
5453 ACCCTGA
1 ACCCTGA
5460 ACCCTGA
1 ACCCTGA
5467 ACCCTGA
1 ACCCTGA
5474 ACCCTGA
1 ACCCTGA
5481 A-CCTGA
1 ACCCTGA
5487 ACCCTG-
1 ACCCTGA
5493 ACCCTGA
1 ACCCTGA
5500 ACCCTGA
1 ACCCTGA
5507 A-CCTGA
1 ACCCTGA
5513 ACCCTGA
1 ACCCTGA
5520 ACCCTGA
1 ACCCTGA
5527 ACCCTGA
1 ACCCTGA
5534 A-CCTGA
1 ACCCTGA
5540 ACCCTGA
1 ACCCTGA
5547 ACCCTGA
1 ACCCTGA
5554 ACCCTGA
1 ACCCTGA
5561 A-CCTGA
1 ACCCTGA
5567 ACCCTGA
1 ACCCTGA
5574 ACCCTGA
1 ACCCTGA
5581 ACCCTGA
1 ACCCTGA
5588 ACCCTGA
1 ACCCTGA
5595 A-CCTGA
1 ACCCTGA
5601 ACCCTGA
1 ACCCTGA
5608 ACCCTGA
1 ACCCTGA
5615 ACCCTGA
1 ACCCTGA
5622 ACCCTGA
1 ACCCTGA
5629 ACCCTGA
1 ACCCTGA
5636 ACCCTGA
1 ACCCTGA
5643 ACCCTGA
1 ACCCTGA
5650 A-CCTGA
1 ACCCTGA
5656 ACCCTGA
1 ACCCTGA
5663 ACCCTGA
1 ACCCTGA
5670 ACCCTGA
1 ACCCTGA
5677 ACCCTGA
1 ACCCTGA
5684 ACCCTGA
1 ACCCTGA
5691 ACCCTGA
1 ACCCTGA
5698 ACCCTGA
1 ACCCTGA
5705 ACCCTGA
1 ACCCTGA
5712 ACCCTGA
1 ACCCTGA
5719 ACCCTGA
1 ACCCTGA
5726 A-CCTGA
1 ACCCTGA
5732 ACCCTGA
1 ACCCTGA
5739 ACCCTGA
1 ACCCTGA
5746 ACCCTGA
1 ACCCTGA
5753 ACCCTGA
1 ACCCTGA
5760 ACCCTGA
1 ACCCTGA
5767 ACCCTG-
1 ACCCTGA
5773 ACCCTGA
1 ACCCTGA
5780 ACCCTGA
1 ACCCTGA
5787 ACCCTGA
1 ACCCTGA
5794 ACCCTGA
1 ACCCTGA
5801 ACCCTGA
1 ACCCTGA
5808 ACCCTGA
1 ACCCTGA
5815 ACCCTGA
1 ACCCTGA
5822 ACCCTGA
1 ACCCTGA
5829 ACCCTGA
1 ACCCTGA
5836 ACCCTGA
1 ACCCTGA
5843 ACCCTGA
1 ACCCTGA
5850 ACCCTGA
1 ACCCTGA
5857 ACCCTGA
1 ACCCTGA
5864 ACCCTGA
1 ACCCTGA
5871 ACCCTGA
1 ACCCTGA
5878 ACCCTGA
1 ACCCTGA
5885 ACCCTGA
1 ACCCTGA
5892 ACCCTGA
1 ACCCTGA
5899 ACCCTGA
1 ACCCTGA
5906 A-CCTGA
1 ACCCTGA
5912 ACCCTGA
1 ACCCTGA
5919 ACCCTGA
1 ACCCTGA
5926 ACCC-GA
1 ACCCTGA
5932 ACCCTGA
1 ACCCTGA
5939 ACCCTGA
1 ACCCTGA
5946 ACCCTGA
1 ACCCTGA
5953 ACCCTGA
1 ACCCTGA
5960 ACCCTGA
1 ACCCTGA
5967 ACCCTGA
1 ACCCTGA
5974 A-CCTGA
1 ACCCTGA
5980 ACCCTGA
1 ACCCTGA
5987 ACCCTGA
1 ACCCTGA
5994 ACCCTGA
1 ACCCTGA
6001 ACCCTGA
1 ACCCTGA
6008 ACCCTGA
1 ACCCTGA
6015 ACCCTGA
1 ACCCTGA
6022 ACCCTGA
1 ACCCTGA
6029 ACCCTGA
1 ACCCTGA
6036 ACCCTGA
1 ACCCTGA
6043 ACCCTGA
1 ACCCTGA
6050 ACCCTGA
1 ACCCTGA
6057 ACCCTGA
1 ACCCTGA
6064 ACCCTGA
1 ACCCTGA
6071 A-CCTGA
1 ACCCTGA
6077 ACCCTGA
1 ACCCTGA
6084 ACCCTGA
1 ACCCTGA
6091 ACCCTGA
1 ACCCTGA
6098 ACCCTGA
1 ACCCTGA
6105 ACCCTGA
1 ACCCTGA
6112 ACCCTGA
1 ACCCTGA
6119 ACCCTGA
1 ACCCTGA
6126 ACCCTGA
1 ACCCTGA
6133 ACCCTGA
1 ACCCTGA
6140 ACCCTGA
1 ACCCTGA
6147 ACCCTG-
1 ACCCTGA
6153 ACCCTGA
1 ACCCTGA
6160 ACCCTGA
1 ACCCTGA
6167 ACCCTGA
1 ACCCTGA
6174 ACCCTGA
1 ACCCTGA
6181 ACCCTGA
1 ACCCTGA
6188 ACCTGCTGA
1 ACC--CTGA
6197 ACCCTGA
1 ACCCTGA
6204 ACCCTGA
1 ACCCTGA
6211 ACCCTGA
1 ACCCTGA
6218 ACCCTGA
1 ACCCTGA
6225 ACCCTGA
1 ACCCTGA
6232 ACCCTGA
1 ACCCTGA
6239 ACCCTGA
1 ACCCTGA
6246 ACCCTGA
1 ACCCTGA
6253 ACCCTGA
1 ACCCTGA
6260 ACCCTGA
1 ACCCTGA
6267 ACCCTGA
1 ACCCTGA
6274 ACCCTGA
1 ACCCTGA
6281 ACCCTGA
1 ACCCTGA
6288 ACCCTGA
1 ACCCTGA
6295 ACCCTGA
1 ACCCTGA
6302 ACCCTGA
1 ACCCTGA
6309 ACCC-GA
1 ACCCTGA
6315 ACCCTGA
1 ACCCTGA
6322 A-CCTGA
1 ACCCTGA
6328 ACCCTGA
1 ACCCTGA
6335 ACCCTGA
1 ACCCTGA
6342 ACCCTGA
1 ACCCTGA
6349 ACCCTGA
1 ACCCTGA
6356 A-CCTGA
1 ACCCTGA
6362 A--CTGA
1 ACCCTGA
6367 ACCCTGA
1 ACCCTGA
6374 ACCCTGA
1 ACCCTGA
6381 ACCCTGA
1 ACCCTGA
6388 ACCCTGA
1 ACCCTGA
6395 ACCCTGA
1 ACCCTGA
6402 ACCCTGA
1 ACCCTGA
6409 ACCCTGA
1 ACCCTGA
6416 ACCCTGA
1 ACCCTGA
6423 ACCCTGA
1 ACCCTGA
6430 ACCCTGA
1 ACCCTGA
6437 ACCCTGA
1 ACCCTGA
6444 ACCCTGA
1 ACCCTGA
6451 ACCCTGA
1 ACCCTGA
6458 ACCCTGA
1 ACCCTGA
6465 ACCCTGA
1 ACCCTGA
6472 ACCCTGA
1 ACCCTGA
6479 ACCCTGA
1 ACCCTGA
6486 ACCCTGA
1 ACCCTGA
6493 ACCCTGA
1 ACCCTGA
6500 ACCCTGA
1 ACCCTGA
6507 ACCCTGA
1 ACCCTGA
6514 ACCCTGA
1 ACCCTGA
6521 ACCCTGA
1 ACCCTGA
6528 ACCCTGA
1 ACCCTGA
6535 A-CCTGA
1 ACCCTGA
6541 ACCCTGA
1 ACCCTGA
6548 ACCCTGA
1 ACCCTGA
6555 ACCCTGA
1 ACCCTGA
6562 ACCCTGA
1 ACCCTGA
6569 ACCCTGA
1 ACCCTGA
6576 ACCCTGA
1 ACCCTGA
6583 ACCCTGA
1 ACCCTGA
6590 ACCCTGA
1 ACCCTGA
6597 A-CCTGA
1 ACCCTGA
6603 A--CTGA
1 ACCCTGA
6608 ACCCTGA
1 ACCCTGA
6615 ACCCTGA
1 ACCCTGA
6622 A-CC-GA
1 ACCCTGA
6627 ACCCTGA
1 ACCCTGA
6634 ACCCTGA
1 ACCCTGA
6641 ACCCTGA
1 ACCCTGA
6648 ACCC-GA
1 ACCCTGA
6654 ACCC-GA
1 ACCCTGA
6660 ACCC-GA
1 ACCCTGA
6666 ACCC-GA
1 ACCCTGA
*
6672 ACCCCGA
1 ACCCTGA
6679 ACCC-GA
1 ACCCTGA
6685 ACCC-GA
1 ACCCTGA
6691 ACCC-GA
1 ACCCTGA
6697 ACCC-GA
1 ACCCTGA
6703 ACCC-GA
1 ACCCTGA
*
6709 ACCCCGA
1 ACCCTGA
6716 ACCC-GA
1 ACCCTGA
*
6722 ACCCCGA
1 ACCCTGA
6729 ACCC-GA
1 ACCCTGA
*
6735 ACCCCGA
1 ACCCTGA
6742 ACCC-GA
1 ACCCTGA
6748 ACCC-GA
1 ACCCTGA
*
6754 ACCCCGA
1 ACCCTGA
6761 ACCC-GA
1 ACCCTGA
*
6767 ACCCCGA
1 ACCCTGA
*
6774 ACCCCGA
1 ACCCTGA
6781 ACCC-GA
1 ACCCTGA
*
6787 ACCCCGA
1 ACCCTGA
6794 ACCC-GA
1 ACCCTGA
6800 ACCC-GA
1 ACCCTGA
6806 ACCC-GA
1 ACCCTGA
6812 ACCC-GA
1 ACCCTGA
6818 ACCC-G-
1 ACCCTGA
*
6823 ACCCCGA
1 ACCCTGA
6830 ACCC-GA
1 ACCCTGA
*
6836 ACCCCCCCGA
1 A---CCCTGA
*
6846 ACCCCGA
1 ACCCTGA
6853 ACCC-GA
1 ACCCTGA
*
6859 ACCCCGA
1 ACCCTGA
*
6866 ACCCCGA
1 ACCCTGA
*
6873 ACCCCGA
1 ACCCTGA
*
6880 ACCCCGA
1 ACCCTGA
6887 A-CC-GA
1 ACCCTGA
*
6892 ACCCCGA
1 ACCCTGA
6899 A-CC-GA
1 ACCCTGA
*
6904 ACCCCGA
1 ACCCTGA
*
6911 ACCCCGA
1 ACCCTGA
*
6918 ACCCCGA
1 ACCCTGA
*
6925 ACCCCGA
1 ACCCTGA
6932 ACCC-GA
1 ACCCTGA
6938 ACCC-GA
1 ACCCTGA
6944 ACCC-GA
1 ACCCTGA
*
6950 ACCCCGA
1 ACCCTGA
*
6957 ACCCCGA
1 ACCCTGA
*
6964 ACCCCGA
1 ACCCTGA
*
6971 ACCCCGA
1 ACCCTGA
*
6978 ACCCCGA
1 ACCCTGA
*
6985 ACCCCGA
1 ACCCTGA
6992 ACCC-GA
1 ACCCTGA
*
6998 ACCCCGA
1 ACCCTGA
7005 ACCC-GA
1 ACCCTGA
7011 ACCC-GA
1 ACCCTGA
*
7017 ACCCCGA
1 ACCCTGA
7024 ACCC-GA
1 ACCCTGA
7030 ACCC-GA
1 ACCCTGA
*
7036 ACCCCGA
1 ACCCTGA
*
7043 ACCCCGA
1 ACCCTGA
7050 ACCC-GA
1 ACCCTGA
*
7056 ACCCCGA
1 ACCCTGA
7063 ACCC-GA
1 ACCCTGA
*
7069 ACCCCGA
1 ACCCTGA
7076 ACCC-GA
1 ACCCTGA
7082 ACCC-GA
1 ACCCTGA
*
7088 ACCCCGA
1 ACCCTGA
*
7095 ACCCCGA
1 ACCCTGA
*
7102 ACCCCGA
1 ACCCTGA
*
7109 ACCCCGA
1 ACCCTGA
7116 ACCC-GA
1 ACCCTGA
*
7122 ACCCCGA
1 ACCCTGA
*
7129 ACCCCGA
1 ACCCTGA
*
7136 ACCCCGA
1 ACCCTGA
*
7143 ACCCCGA
1 ACCCTGA
*
7150 ACCCCGA
1 ACCCTGA
*
7157 ACCCCGA
1 ACCCTGA
7164 ACCC-GA
1 ACCCTGA
7170 A-CC-GA
1 ACCCTGA
7175 A-CC-GA
1 ACCCTGA
7180 ACCC-GA
1 ACCCTGA
*
7186 ACCCCGA
1 ACCCTGA
7193 ACCC-GA
1 ACCCTGA
*
7199 ACCCCGA
1 ACCCTGA
*
7206 ACCCCGA
1 ACCCTGA
7213 ACCC-GA
1 ACCCTGA
*
7219 ACCCCGA
1 ACCCTGA
*
7226 ACCCCGA
1 ACCCTGA
*
7233 ACCCCGA
1 ACCCTGA
*
7240 ACCCCGA
1 ACCCTGA
*
7247 ACCCCGA
1 ACCCTGA
*
7254 ACCCCGA
1 ACCCTGA
7261 ACCC-GA
1 ACCCTGA
7267 ACCC-GA
1 ACCCTGA
*
7273 ACCCCGA
1 ACCCTGA
7280 ACCC-GA
1 ACCCTGA
*
7286 ACCCCGA
1 ACCCTGA
*
7293 ACCCCGA
1 ACCCTGA
7300 ACCC-GA
1 ACCCTGA
*
7306 ACCCCGA
1 ACCCTGA
*
7313 ACCCCGA
1 ACCCTGA
*
7320 ACCCCGA
1 ACCCTGA
*
7327 ACCCCGA
1 ACCCTGA
7334 ACCC-GA
1 ACCCTGA
7340 ACCC-GA
1 ACCCTGA
7346 A-CC-GA
1 ACCCTGA
7351 ACCC-GA
1 ACCCTGA
*
7357 ACCCCGA
1 ACCCTGA
*
7364 ACCCCGA
1 ACCCTGA
7371 A-CC-GA
1 ACCCTGA
*
7376 ACCCCGA
1 ACCCTGA
*
7383 ACCCCGA
1 ACCCTGA
*
7390 ACCCCGA
1 ACCCTGA
*
7397 ACCCCGA
1 ACCCTGA
*
7404 ACCCCGA
1 ACCCTGA
7411 ACCC-GA
1 ACCCTGA
*
7417 ACCCCGA
1 ACCCTGA
7424 ACCC-GA
1 ACCCTGA
*
7430 ACCCCGA
1 ACCCTGA
*
7437 ACCCCGA
1 ACCCTGA
*
7444 ACCCCGA
1 ACCCTGA
7451 ACCC-GA
1 ACCCTGA
7457 ACCC-GA
1 ACCCTGA
*
7463 ACCCCGA
1 ACCCTGA
*
7470 ACCCCGA
1 ACCCTGA
7477 ACCC-GA
1 ACCCTGA
*
7483 ACCCCGA
1 ACCCTGA
*
7490 ACCCCGA
1 ACCCTGA
7497 ACCC-GA
1 ACCCTGA
*
7503 ACCCCGA
1 ACCCTGA
*
7510 ACCCCGA
1 ACCCTGA
*
7517 ACCCCGA
1 ACCCTGA
*
7524 ACCCCGA
1 ACCCTGA
*
7531 ACCCCGA
1 ACCCTGA
*
7538 ACCCCGA
1 ACCCTGA
7545 ACCC-GA
1 ACCCTGA
7551 ACCC-GA
1 ACCCTGA
*
7557 ACCCCGA
1 ACCCTGA
*
7564 ACCCCGA
1 ACCCTGA
7571 ACCC-GA
1 ACCCTGA
*
7577 ACCCCGA
1 ACCCTGA
*
7584 ACCCCGA
1 ACCCTGA
*
7591 ACCCCGA
1 ACCCTGA
*
7598 ACCCCGA
1 ACCCTGA
*
7605 ACCCCGA
1 ACCCTGA
*
7612 ACCCCGA
1 ACCCTGA
*
7619 ACCCCGA
1 ACCCTGA
7626 ACCC
1 ACCC
7630 CCCCCGAACC
Statistics
Matches: 7169, Mismatches: 160, Indels: 550
0.91 0.02 0.07
Matches are distributed among these distances:
4 6 0.00
5 105 0.01
6 1335 0.19
7 5559 0.78
8 129 0.02
9 32 0.00
10 3 0.00
ACGTcount: A:0.36, C:0.44, G:0.07, T:0.12
Consensus pattern (7 bp):
ACCCTGA
Found at i:7701 original size:7 final size:7
Alignment explanation
Indices: 7691--7834 Score: 174
Period size: 7 Copynumber: 20.4 Consensus size: 7
7681 AACCCCCCCC
7691 CCCCGAA
1 CCCCGAA
7698 CCCCGAA
1 CCCCGAA
7705 CCCCGAA
1 CCCCGAA
7712 CCCCGAA
1 CCCCGAA
7719 CCCCGAA
1 CCCCGAA
7726 -CCCGAA
1 CCCCGAA
7732 CCCCGAA
1 CCCCGAA
7739 CCCCGAA
1 CCCCGAA
7746 CCCCGAA
1 CCCCGAA
7753 CCCCGAA
1 CCCCGAA
7760 CCCCGAA
1 CCCCGAA
7767 -CCCG-A
1 CCCCGAA
7772 CACCCG-A
1 C-CCCGAA
7779 CACCCG-A
1 C-CCCGAA
7786 CCCCGACA
1 CCCCGA-A
7794 CCCCG-A
1 CCCCGAA
7800 CACCCGAAA
1 C-CCCG-AA
7809 CCCCGACA
1 CCCCGA-A
*
7817 CCCCGAC
1 CCCCGAA
7824 CCCCGACA
1 CCCCGA-A
7832 CCC
1 CCC
7835 GCACCCGCAC
Statistics
Matches: 125, Mismatches: 2, Indels: 19
0.86 0.01 0.13
Matches are distributed among these distances:
5 1 0.01
6 16 0.13
7 86 0.69
8 20 0.16
9 2 0.02
ACGTcount: A:0.27, C:0.59, G:0.14, T:0.00
Consensus pattern (7 bp):
CCCCGAA
Found at i:7835 original size:7 final size:7
Alignment explanation
Indices: 7761--7894 Score: 170
Period size: 7 Copynumber: 19.4 Consensus size: 7
7751 AACCCCGAAC
7761 CCCGA-A
1 CCCGACA
7767 CCCGACA
1 CCCGACA
7774 CCCGACA
1 CCCGACA
7781 CCCGAC-
1 CCCGACA
7787 CCCGACA
1 CCCGACA
7794 CCCCGACA
1 -CCCGACA
*
7802 CCCGAAA
1 CCCGACA
7809 CCCCGACA
1 -CCCGACA
*
7817 CCCCGACC
1 -CCCGACA
7825 CCCGACA
1 CCCGACA
7832 CCCG-CA
1 CCCGACA
7838 CCCG-CA
1 CCCGACA
7844 CCCG-CA
1 CCCGACA
7850 CCCGACA
1 CCCGACA
7857 CCCGACA
1 CCCGACA
7864 CCCGACA
1 CCCGACA
7871 CCCGACA
1 CCCGACA
* *
7878 CCCTAAA
1 CCCGACA
7885 CCCGACA
1 CCCGACA
7892 CCC
1 CCC
7895 TAAACCCTAA
Statistics
Matches: 115, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
6 29 0.25
7 66 0.57
8 20 0.17
ACGTcount: A:0.26, C:0.60, G:0.13, T:0.01
Consensus pattern (7 bp):
CCCGACA
Found at i:7895 original size:14 final size:14
Alignment explanation
Indices: 7843--7929 Score: 95
Period size: 14 Copynumber: 6.3 Consensus size: 14
7833 CCGCACCCGC
* *
7843 ACCCG-CACCCGAC
1 ACCCGACACCCTAA
* *
7856 ACCCGACACCCGAC
1 ACCCGACACCCTAA
7870 ACCCGACACCCTAA
1 ACCCGACACCCTAA
7884 ACCCGACACCCTAA
1 ACCCGACACCCTAA
* *
7898 ACCCTAAACCCTAA
1 ACCCGACACCCTAA
* *
7912 ACCCTAAACCCTAA
1 ACCCGACACCCTAA
7926 ACCC
1 ACCC
7930 TAAACCCGAG
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
13 5 0.07
14 64 0.93
ACGTcount: A:0.34, C:0.52, G:0.07, T:0.07
Consensus pattern (14 bp):
ACCCGACACCCTAA
Found at i:7901 original size:7 final size:7
Alignment explanation
Indices: 7877--7936 Score: 102
Period size: 7 Copynumber: 8.6 Consensus size: 7
7867 GACACCCGAC
7877 ACCCTAA
1 ACCCTAA
* *
7884 ACCCGAC
1 ACCCTAA
7891 ACCCTAA
1 ACCCTAA
7898 ACCCTAA
1 ACCCTAA
7905 ACCCTAA
1 ACCCTAA
7912 ACCCTAA
1 ACCCTAA
7919 ACCCTAA
1 ACCCTAA
7926 ACCCTAA
1 ACCCTAA
7933 ACCC
1 ACCC
7937 GAGCCCCGAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.40, C:0.47, G:0.02, T:0.12
Consensus pattern (7 bp):
ACCCTAA
Found at i:7944 original size:7 final size:7
Alignment explanation
Indices: 7934--7996 Score: 126
Period size: 7 Copynumber: 9.0 Consensus size: 7
7924 AAACCCTAAA
7934 CCCGAGC
1 CCCGAGC
7941 CCCGAGC
1 CCCGAGC
7948 CCCGAGC
1 CCCGAGC
7955 CCCGAGC
1 CCCGAGC
7962 CCCGAGC
1 CCCGAGC
7969 CCCGAGC
1 CCCGAGC
7976 CCCGAGC
1 CCCGAGC
7983 CCCGAGC
1 CCCGAGC
7990 CCCGAGC
1 CCCGAGC
7997 TATCATAGAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 56 1.00
ACGTcount: A:0.14, C:0.57, G:0.29, T:0.00
Consensus pattern (7 bp):
CCCGAGC
Found at i:8099 original size:34 final size:31
Alignment explanation
Indices: 8082--8143 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
8072 CTGATGCTGC
*
8082 AACTTATATAAAAGCTTCCACATTTGAGGAT
1 AACTTATATAAAAGCTTCCACATTTGATGAT
*
8113 AACTTATATTAAAGCTTCCACATTTGATGAT
1 AACTTATATAAAAGCTTCCACATTTGATGAT
8144 TTTATGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.35
Consensus pattern (31 bp):
AACTTATATAAAAGCTTCCACATTTGATGAT
Found at i:9704 original size:21 final size:21
Alignment explanation
Indices: 9678--9721 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
9668 TGATAACTTA
*
9678 TATTAAAATTATTTATAATAT
1 TATTAAAATTATCTATAATAT
9699 TATTAAAATTATCTATAATAT
1 TATTAAAATTATCTATAATAT
9720 TA
1 TA
9722 ATTATTTGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TATTAAAATTATCTATAATAT
Found at i:11840 original size:6 final size:6
Alignment explanation
Indices: 11829--11853 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
11819 CAATTAAAGT
11829 CTCAAA CTCAAA CTCAAA CTCAAA C
1 CTCAAA CTCAAA CTCAAA CTCAAA C
11854 CTGAACCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (6 bp):
CTCAAA
Found at i:12066 original size:20 final size:20
Alignment explanation
Indices: 12041--12084 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
12031 AGTCGAGCTC
* *
12041 GAGTCGAGTTCATTCGATCT
1 GAGTCGAGTCCATTCGAACT
12061 GAGTCGAGTCCATTCGAACT
1 GAGTCGAGTCCATTCGAACT
12081 GAGT
1 GAGT
12085 ATTTATCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (20 bp):
GAGTCGAGTCCATTCGAACT
Found at i:13315 original size:65 final size:65
Alignment explanation
Indices: 13206--13384 Score: 340
Period size: 65 Copynumber: 2.8 Consensus size: 65
13196 ATTGTAAACA
13206 CTTGGGAATCTTTTACACTATCGCAACACATTCTTTATTGTTTCAAACTAAGATCTTACAAATGG
1 CTTGGGAATCTTTTACACTATCGCAACACATTCTTTATTGTTTCAAACTAAGATCTTACAAATGG
* *
13271 CTTGAGAATCTTTTACACTATCGCAACACATTCTTTATTGTTTCAAACTAAGATCTTATAAATGG
1 CTTGGGAATCTTTTACACTATCGCAACACATTCTTTATTGTTTCAAACTAAGATCTTACAAATGG
13336 CTTGGGAATCTTTTACACTATCGCAACACATTCTTTATTGTTTCAAACT
1 CTTGGGAATCTTTTACACTATCGCAACACATTCTTTATTGTTTCAAACT
13385 CCACGTGAAT
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 111 1.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (65 bp):
CTTGGGAATCTTTTACACTATCGCAACACATTCTTTATTGTTTCAAACTAAGATCTTACAAATGG
Found at i:13525 original size:20 final size:20
Alignment explanation
Indices: 13500--13575 Score: 98
Period size: 20 Copynumber: 3.8 Consensus size: 20
13490 CATTTTTCAA
13500 AATCGCGTTGCGAATCTTAC
1 AATCGCGTTGCGAATCTTAC
*
13520 AATCGCGTTGTGAATCTTAC
1 AATCGCGTTGCGAATCTTAC
* * *
13540 AATCGCGTGGCGAATCTGGAT
1 AATCGCGTTGCGAATCT-TAC
*
13561 ATTCGCGTTGCGAAT
1 AATCGCGTTGCGAAT
13576 TTGGAAACTG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 34 0.71
21 14 0.29
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (20 bp):
AATCGCGTTGCGAATCTTAC
Found at i:14428 original size:104 final size:104
Alignment explanation
Indices: 14296--14505 Score: 366
Period size: 104 Copynumber: 2.0 Consensus size: 104
14286 ATATCATGCT
* *
14296 TTGGGGATTCCTTTTGTCGCTGAAACTCGACACTGCTAATCGGTTTTATGAAGATATGAAGACTA
1 TTGGGGATTCCTTTTGTAGCTGAAACTCGACACTACTAATCGGTTTTATGAAGATATGAAGACTA
14361 GAGGCATTGCACCTGATGATGTGACGTATAATACATTGA
66 GAGGCATTGCACCTGATGATGTGACGTATAATACATTGA
* *
14400 TTGGGGATTCTTTTTGTAGCTGAGACTCGACACTACTAATCGGTTTTATGAAGATATGAAGACTA
1 TTGGGGATTCCTTTTGTAGCTGAAACTCGACACTACTAATCGGTTTTATGAAGATATGAAGACTA
* *
14465 GGGGCATTGCACCTGATGCTGTGACGTATAATACATTGA
66 GAGGCATTGCACCTGATGATGTGACGTATAATACATTGA
14504 TT
1 TT
14506 AATGGATATA
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (104 bp):
TTGGGGATTCCTTTTGTAGCTGAAACTCGACACTACTAATCGGTTTTATGAAGATATGAAGACTA
GAGGCATTGCACCTGATGATGTGACGTATAATACATTGA
Found at i:16571 original size:15 final size:15
Alignment explanation
Indices: 16553--16584 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
16543 TATTTTTAAT
16553 TTTTATATTCGAATA
1 TTTTATATTCGAATA
*
16568 TTTTATATTCTAATA
1 TTTTATATTCGAATA
16583 TT
1 TT
16585 CATATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.59
Consensus pattern (15 bp):
TTTTATATTCGAATA
Found at i:23147 original size:18 final size:17
Alignment explanation
Indices: 23124--23157 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
23114 AATTAACGTT
23124 TATTCTAGATGAAAAAAA
1 TATTCTAGAT-AAAAAAA
*
23142 TATTCTATATAAAAAA
1 TATTCTAGATAAAAAA
23158 GCATATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (17 bp):
TATTCTAGATAAAAAAA
Found at i:24339 original size:21 final size:23
Alignment explanation
Indices: 24298--24339 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
24288 CCACTAATCC
24298 TTAAGCTCTAAAAGTTTCACAGT
1 TTAAGCTCTAAAAGTTTCACAGT
*
24321 TTAAGCT-TCAAAG-TTCACA
1 TTAAGCTCTAAAAGTTTCACA
24340 TTGTGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (23 bp):
TTAAGCTCTAAAAGTTTCACAGT
Found at i:27792 original size:21 final size:21
Alignment explanation
Indices: 27750--27792 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
27740 TTTCTGGGCT
* *
27750 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
27771 AGGGGAATCGATCCCCCCTCA
1 AGGGGAATCGATACCCACTCA
27792 A
1 A
27793 AATATGAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:28958 original size:30 final size:30
Alignment explanation
Indices: 28897--29055 Score: 230
Period size: 30 Copynumber: 5.3 Consensus size: 30
28887 CTAAGGAACA
* * ***
28897 TATGGATAGTTTACCTAGGTTCTTCGGGACC
1 TATGGATAG-TTACCGAGGATCTTTATGACC
28928 TATGGATAGTTACCGAGGATCTTTATGACC
1 TATGGATAGTTACCGAGGATCTTTATGACC
28958 TA-GGATAGTTACCGAGGATCTTTATGACC
1 TATGGATAGTTACCGAGGATCTTTATGACC
*
28987 TCTGGATAGTTACCGAGGATCTTTATGACC
1 TATGGATAGTTACCGAGGATCTTTATGACC
*
29017 TCTGGATAGTTACCGAGGATCTTTATGACC
1 TATGGATAGTTACCGAGGATCTTTATGACC
*
29047 TCTGGATAG
1 TATGGATAG
29056 GTCTTTCGGA
Statistics
Matches: 121, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
29 28 0.23
30 84 0.69
31 9 0.07
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (30 bp):
TATGGATAGTTACCGAGGATCTTTATGACC
Found at i:32895 original size:362 final size:353
Alignment explanation
Indices: 32189--32903 Score: 1333
Period size: 352 Copynumber: 2.0 Consensus size: 353
32179 TCCGAATAAC
32189 ATATTTTAGAAGTACTTCTGACACTCGTGTCTAATGCATATCCAGATATGAGTGGCAATATGATA
1 ATATTTTAGAAGTACTTCTGACACTCGTGTCTAATGCATATCCAGATATGAGTGGCAATATGATA
32254 ATCCAAAATGCATTGAAAAACTTAGAACAGACTCTGACGGACACTTAAGTCTAGAACATAGTTAA
66 ATCCAAAATGCATTGAAAAACTTAGAACAGACTCTGACGGACACTTAAGTCTAGAACATAGTTAA
32319 TAATTGCATTGGTTGAAATAAATTCTAACAATTCGCAATTACCAAGTGGGATCTATAATGACATC
131 TAATTGCATTGGTTGAAATAAATTCTAACAATTCGCAATTACCAAGTGGGATCTATAATGACATC
32384 TTGTCTTTCTTAGGGAACTCGGCATAGGTACAGTAAGCAAGTGAGAATGAGAACAGTAACTGTTT
196 TTGTCTTTCTTAGGGAACTCGGCATAGGTACAGTAAGCAAGTGAGAATGAGAACAGTAACTGTTT
32449 CGTCTGTAGCAAACAATGTTTGATACGAAACTACCTCCAGGAGTGAAAATGCTCCAACCATTCTC
261 CGTCTGTAGCAAACAATGTTTGATACGAAACTACCTCCAGGAGTGAAAATGCTCCAACCATTCTC
32514 TGAAGATTCTTCTAT-AAAAAAATTCGG
326 TGAAGATTCTTCTATAAAAAAAATTCGG
32541 ATATTTTAGAAGTACTTCTGACACTCGTGTCTAATGCATATCCAGATATGAGTGGCAATATGATA
1 ATATTTTAGAAGTACTTCTGACACTCGTGTCTAATGCATATCCAGATATGAGTGGCAATATGATA
32606 ATCCAAAATGCATTGAAAAACTTAGAACAGACTCATGACGGACACTTAAGTCCTAGTAACATAGT
66 ATCCAAAATGCATTGAAAAACTTAGAACAGACTC-TGACGGACACTTAAGT-CTAG-AACATAGT
32671 TAATAATTGCATTGGTTTGAAATAACTATTCTAACAATTCGCAATTACCAAGTGGGATCTATAAT
128 TAATAATTGCATTGG-TTGAAATAA--ATTCTAACAATTCGCAATTACCAAGTGGGATCTATAAT
32736 GACATCTTGTCTTTTCTTAGGGAACTCGGCATAGGTACAGTAAGCAATTGTGAGAATGAGCAACA
190 GACATCTTGTC-TTTCTTAGGGAACTCGGCATAGGTACAGTAAGCAA--GTGAGAATGAG-AACA
32801 GTAACTGTTTCGTCTGTAGCAAACAATGTTTGATACGAAACTACCTCCAGGAGTGAAAATGCTCC
251 GTAACTGTTTCGTCTGTAGCAAACAATGTTTGATACGAAACTACCTCCAGGAGTGAAAATGCTCC
32866 AACCATTCTCTGAAGATTCTTCTATAAAAAAAATTCGG
316 AACCATTCTCTGAAGATTCTTCTATAAAAAAAATTCGG
32904 TGTACAGGAA
Statistics
Matches: 352, Mismatches: 0, Indels: 11
0.97 0.00 0.03
Matches are distributed among these distances:
352 99 0.28
353 16 0.05
354 4 0.01
355 23 0.07
356 9 0.03
358 49 0.14
359 35 0.10
361 11 0.03
362 94 0.27
363 12 0.03
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (353 bp):
ATATTTTAGAAGTACTTCTGACACTCGTGTCTAATGCATATCCAGATATGAGTGGCAATATGATA
ATCCAAAATGCATTGAAAAACTTAGAACAGACTCTGACGGACACTTAAGTCTAGAACATAGTTAA
TAATTGCATTGGTTGAAATAAATTCTAACAATTCGCAATTACCAAGTGGGATCTATAATGACATC
TTGTCTTTCTTAGGGAACTCGGCATAGGTACAGTAAGCAAGTGAGAATGAGAACAGTAACTGTTT
CGTCTGTAGCAAACAATGTTTGATACGAAACTACCTCCAGGAGTGAAAATGCTCCAACCATTCTC
TGAAGATTCTTCTATAAAAAAAATTCGG
Found at i:34252 original size:13 final size:13
Alignment explanation
Indices: 34234--34258 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34224 TTAAATCTTG
34234 AAAGAAAAGATGA
1 AAAGAAAAGATGA
34247 AAAGAAAAGATG
1 AAAGAAAAGATG
34259 TAGAATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (13 bp):
AAAGAAAAGATGA
Found at i:43013 original size:210 final size:211
Alignment explanation
Indices: 42651--43069 Score: 822
Period size: 210 Copynumber: 2.0 Consensus size: 211
42641 GAATCACTGG
42651 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
1 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
42716 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATTGCTCATTCCCTTGTTGATAAT
66 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATTGCTCATTCCCTTGTTGATAAT
42781 ACTTACCCTTTTCCTCTTGA-TTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
131 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
42845 TGAATTTCTTTGGAGT
196 TGAATTTCTTTGGAGT
42861 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
1 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
42926 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATTGCTCATTCCCTTGTTGATAAT
66 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATTGCTCATTCCCTTGTTGATAAT
42991 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
131 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
*
43056 TGAATTTTTTTGGA
196 TGAATTTCTTTGGA
43070 TTAGTTATGC
Statistics
Matches: 207, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
210 150 0.72
211 57 0.28
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (211 bp):
AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATTGCTCATTCCCTTGTTGATAAT
ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
TGAATTTCTTTGGAGT
Found at i:48189 original size:21 final size:23
Alignment explanation
Indices: 48155--48198 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
48145 ATTTCCAATC
*
48155 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
48178 ATATTCT-T-AAATTAAATTAAT
1 ATATTCTATAAAATTAAATTAAT
48199 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:48385 original size:14 final size:14
Alignment explanation
Indices: 48366--48394 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
48356 TATTAATATT
48366 TAAACTATAAATTA
1 TAAACTATAAATTA
48380 TAAACTATAAATTA
1 TAAACTATAAATTA
48394 T
1 T
48395 TATATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAACTATAAATTA
Found at i:50351 original size:19 final size:21
Alignment explanation
Indices: 50327--50382 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 21
50317 TATTCTTAAA
*
50327 TTAAATTATTTAT-ATAAT-T
1 TTAAATTATTAATAATAATAT
50346 TTAAA-TA-TAATAATAATAT
1 TTAAATTATTAATAATAATAT
* *
50365 TTAAATTATAAATTATAA
1 TTAAATTATTAATAATAA
50383 AATATCATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 3 0.10
18 7 0.23
19 11 0.37
20 2 0.07
21 7 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAAATTATTAATAATAATAT
Found at i:50374 original size:20 final size:20
Alignment explanation
Indices: 50327--50375 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
50317 TATTCTTAAA
*
50327 TTAAATTAT-TTATATAATT
1 TTAAATTATAATATATAATT
50346 TTAAA-TATAATA-ATAATAT
1 TTAAATTATAATATATAAT-T
50365 TTAAATTATAA
1 TTAAATTATAA
50376 ATTATAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 8 0.31
19 13 0.50
20 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTAAATTATAATATATAATT
Found at i:50386 original size:34 final size:33
Alignment explanation
Indices: 50348--50413 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
50338 ATATAATTTT
*
50348 AAATATAATAATAATAT-TTAAATTATAAATTATA
1 AAATATAATAAGAATATATT-AATT-TAAATTATA
*
50382 AAATATCATAAGAATATATTAATTTAAATTAT
1 AAATATAATAAGAATATATTAATTTAAATTAT
50414 CATTGTTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 8 0.28
34 19 0.66
35 2 0.07
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (33 bp):
AAATATAATAAGAATATATTAATTTAAATTATA
Found at i:50438 original size:26 final size:26
Alignment explanation
Indices: 50409--50459 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
50399 ATTAATTTAA
50409 ATTATCATTGTTTGATTTAGATAATG
1 ATTATCATTGTTTGATTTAGATAATG
*
50435 ATTATCATTGTTTGATTTGGATAAT
1 ATTATCATTGTTTGATTTAGATAAT
50460 TTATTCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.51
Consensus pattern (26 bp):
ATTATCATTGTTTGATTTAGATAATG
Found at i:50524 original size:26 final size:26
Alignment explanation
Indices: 50494--50548 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
50484 TTCAAACTTG
* *
50494 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTCGGATAAT
* *
50520 GATTATCATTGTTTGATTCGGATTAT
1 GATTATCAATGTTTGATTCGGATAAT
50546 GAT
1 GAT
50549 GTGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (26 bp):
GATTATCAATGTTTGATTCGGATAAT
Found at i:50995 original size:3 final size:3
Alignment explanation
Indices: 50989--51016 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
50979 GCTTGTTTTA
50989 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
51017 TTTTGTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:58335 original size:20 final size:21
Alignment explanation
Indices: 58310--58378 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
58300 ATGTTTTTTT
58310 TAAATTAAATTAAAATA-TCA
1 TAAATTAAATTAAAATATTCA
** *
58330 TAAATTAAATTAATTTATTCT
1 TAAATTAAATTAAAATATTCA
* *
58351 TAAATTAAATTAAATTATTTA
1 TAAATTAAATTAAAATATTCA
58372 TATAATT
1 TA-AATT
58379 TATAAATATA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 15 0.37
21 22 0.54
22 4 0.10
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAATTAAATTAAAATATTCA
Found at i:58356 original size:21 final size:21
Alignment explanation
Indices: 58309--58369 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
58299 GATGTTTTTT
*
58309 TTAAATTAAATTAAAATA-TC
1 TTAAATTAAATTAAATTATTC
* *
58329 ATAAATTAAATTAATTTATTC
1 TTAAATTAAATTAAATTATTC
58350 TTAAATTAAATTAAATTATT
1 TTAAATTAAATTAAATTATT
58370 TATATAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 15 0.43
21 20 0.57
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (21 bp):
TTAAATTAAATTAAATTATTC
Found at i:58460 original size:26 final size:26
Alignment explanation
Indices: 58431--58525 Score: 92
Period size: 25 Copynumber: 3.8 Consensus size: 26
58421 TAAGAATATA
*
58431 TTAATTTAAATTATATTAATATATTC
1 TTAAATTAAATTATATTAATATATTC
58457 TTAAATTAAATTAT-TCTAATAT-TAT-
1 TTAAATTAAATTATAT-TAATATAT-TC
* ** *
58482 TTAAAATATTTTATA-TAATTTATTC
1 TTAAATTAAATTATATTAATATATTC
58507 TTAAATTAAATTA-ATTAAT
1 TTAAATTAAATTATATTAAT
58526 TTATATAATT
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
24 7 0.13
25 28 0.51
26 20 0.36
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (26 bp):
TTAAATTAAATTATATTAATATATTC
Found at i:58506 original size:34 final size:34
Alignment explanation
Indices: 58436--58538 Score: 93
Period size: 34 Copynumber: 2.9 Consensus size: 34
58426 ATATATTAAT
* * *
58436 TTAAATTATATTAATATATTCTTAAATTAAATTATTC
1 TTAAATTAT-TTAAAATATT-TTATA-TAATTTATTC
58473 -TAATATTATTTAAAATATTTTATATAATTTATTC
1 TTAA-ATTATTTAAAATATTTTATATAATTTATTC
* * *
58507 TTAAATTAAATT-AATTAATTTATATAATTTAT
1 TTAAATT-ATTTAAAATATTTTATATAATTTAT
58539 AAATATAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
34 30 0.53
35 10 0.18
36 12 0.21
37 5 0.09
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (34 bp):
TTAAATTATTTAAAATATTTTATATAATTTATTC
Found at i:58801 original size:13 final size:14
Alignment explanation
Indices: 58778--58806 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
58768 ATAATAATAT
58778 TAATATTTAAATTA
1 TAATATTTAAATTA
58792 TAAT-TTTAAATTA
1 TAATATTTAAATTA
58805 TA
1 TA
58807 TTAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATTTAAATTA
Found at i:58866 original size:49 final size:47
Alignment explanation
Indices: 58802--58908 Score: 133
Period size: 49 Copynumber: 2.2 Consensus size: 47
58792 TAATTTTAAA
*
58802 TTATATTAATATATTCTTAAATTAAATTGATTTAAATTATTATAATATTT
1 TTATA-TAATATATTCTTAAATTAAATT-AATTAAATTA-TATAATATTT
* * *
58852 TTATATAATTTATTCTTAAATTGAATTAATTAATTTATATAATATTT
1 TTATATAATATATTCTTAAATTAAATTAATTAAATTATATAATATTT
**
58899 AAATATAATA
1 TTATATAATA
58909 AGGATTAAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
47 17 0.34
48 8 0.16
49 20 0.40
50 5 0.10
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (47 bp):
TTATATAATATATTCTTAAATTAAATTAATTAAATTATATAATATTT
Found at i:59143 original size:361 final size:359
Alignment explanation
Indices: 58434--59245 Score: 1156
Period size: 361 Copynumber: 2.2 Consensus size: 359
58424 GAATATATTA
*
58434 ATTTAAATTATATTAATATATTCTTAAATTAAATTATTCTAATATTATT-TAAAATATTTTATAT
1 ATTTAAATTATATTAATATATTCTTAAATTAAATTATT-TAA-ATTATTATAATAT-TTTTATAT
58498 AATTTATTCTTAAATTAAATTAATTAATTTATATAATTTATAAATATAATAAGGATTAAGATACA
63 AATTTATTCTTAAATTAAATTAATTAATTTATATAATTTATAAATATAATAAGGATTAAGATACA
* * * * *
58563 CTTATATTGTGTAAAACTCTTTTAGGTTTGCATCTTTTTAGTCTCATTGGATTGAGAGAAATCAA
128 CTTACACTATGTAAAACTCTTTTAGGTTTACATCTTTTTAGGCTCATTGGATTGAGAGAAATCAA
* * *
58628 AGGTTGAAATTAATTCGTTTTTTAGTGAATATCTGTTCATTTTCCATGGTTAATCTTAGTCTTTA
193 AGATTGAAATTAATTCGTTTTTTAGTGAATATCTGTTCATTTTCCACGATTAATCTTAGTCTTTA
* * * * *
58693 ATTTCTTTCATTCAATGGTCCTAAAATGGTGTAAAACTAAAGAGTTTTATACACTATAATTGGAT
258 ATTTCTCTCATCCAATGATCCTAAAATGGTATAAAACTAAAGAGTTTTACACACTATAATTGGAT
*
58758 CTTGCCCCATATAATAATATTAATATTTAAATTATA-
323 CCTGCCCCATATAATAATATTAATATTTAAATTATAG
58794 ATTTTAAATTATATTAATATATTCTTAAATTAAATTGATTTAAATTATTATAATATTTTTATATA
1 A-TTTAAATTATATTAATATATTCTTAAATTAAATT-ATTTAAATTATTATAATATTTTTATATA
*
58859 ATTTATTCTTAAATTGAATTAATTAATTTATATAATATT-TAAATATAATAAGGATTAAGAT-CT
64 ATTTATTCTTAAATTAAATTAATTAATTTATATAAT-TTATAAATATAATAAGGATTAAGATAC-
* * *
58922 ATTTACACTATGTAAAACTCTTTTAGTTTTACA-CATTTTTAGAGC-GATTGGATTGAGAGAAAT
127 ACTTACACTATGTAAAACTCTTTTAGGTTTACATC-TTTTTAG-GCTCATTGGATTGAGAGAAAT
* *
58985 CAAAGATTGAGATTAATTCGTTTTTTTAGTGAATATCTTTTCATTTTCCACGATTAAT-TTCAGT
190 CAAAGATTGAAATTAATTCG-TTTTTTAGTGAATATCTGTTCATTTTCCACGATTAATCTT-AGT
* * *
59049 TTTTAATTTCTCTCATCCAATGATCTTAAAATGGTAT-AAACTAAAAGAGTTTTACACATTATAA
253 CTTTAATTTCTCTCATCCAATGATCCTAAAATGGTATAAAACT-AAAGAGTTTTACACACTATAA
*
59113 TTGGATCCTGCCCTATATAATAATATTAATATTTAAATTATAG
317 TTGGATCCTGCCCCATATAATAATATTAATATTTAAATTATAG
* * *
59156 ATTTAAATTATATTAATATGTTC-TAAACATAAATAATTTAAATTATTATAATATTATTTTTATA
1 ATTTAAATTATATTAATATATTCTTAAA-TTAAATTATTTAAATTATTAT-A-A-TATTTTTATA
*
59220 TAATTTATTTTTAAATTAAATTAATT
62 TAATTTATTCTTAAATTAAATTAATT
59246 TATTCTTAAA
Statistics
Matches: 407, Mismatches: 30, Indels: 27
0.88 0.06 0.06
Matches are distributed among these distances:
359 2 0.00
360 167 0.41
361 199 0.49
362 5 0.01
363 34 0.08
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (359 bp):
ATTTAAATTATATTAATATATTCTTAAATTAAATTATTTAAATTATTATAATATTTTTATATAAT
TTATTCTTAAATTAAATTAATTAATTTATATAATTTATAAATATAATAAGGATTAAGATACACTT
ACACTATGTAAAACTCTTTTAGGTTTACATCTTTTTAGGCTCATTGGATTGAGAGAAATCAAAGA
TTGAAATTAATTCGTTTTTTAGTGAATATCTGTTCATTTTCCACGATTAATCTTAGTCTTTAATT
TCTCTCATCCAATGATCCTAAAATGGTATAAAACTAAAGAGTTTTACACACTATAATTGGATCCT
GCCCCATATAATAATATTAATATTTAAATTATAG
Found at i:59161 original size:13 final size:13
Alignment explanation
Indices: 59143--59167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59133 TAATATTAAT
59143 ATTTAAATTATAG
1 ATTTAAATTATAG
59156 ATTTAAATTATA
1 ATTTAAATTATA
59168 TTAATATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
ATTTAAATTATAG
Found at i:59229 original size:15 final size:16
Alignment explanation
Indices: 59202--59232 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
59192 TTTAAATTAT
59202 TATAATATTATTTTTA
1 TATAATATTATTTTTA
59218 TATAAT-TTATTTTTA
1 TATAATATTATTTTTA
59233 AATTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATAATATTATTTTTA
Found at i:59244 original size:21 final size:21
Alignment explanation
Indices: 59220--59262 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
59210 TATTTTTATA
*
59220 TAATTTATTTTTAAATTAAAT
1 TAATTTATTCTTAAATTAAAT
59241 TAATTTATTCTTAAATTAAAT
1 TAATTTATTCTTAAATTAAAT
59262 T
1 T
59263 GTTTATATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATTTATTCTTAAATTAAAT
Found at i:61740 original size:21 final size:23
Alignment explanation
Indices: 61706--61749 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
61696 ATTTCCAATC
*
61706 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
61729 ATATTCT-T-AAATTAAATTAAT
1 ATATTCTATAAAATTAAATTAAT
61750 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:63946 original size:24 final size:25
Alignment explanation
Indices: 63883--63946 Score: 62
Period size: 24 Copynumber: 2.6 Consensus size: 25
63873 AATTTATTCT
* *
63883 TAAAT-TAAATTATTTATATAATTTA
1 TAAATATAAATTA-TAATAAAATTTA
*
63908 TAAATAT-AATAATAATAAAATTTA
1 TAAATATAAATTATAATAAAATTTA
*
63932 -AATTATAAATTATAA
1 TAAATATAAATTATAA
63947 AATATCATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
23 5 0.16
24 17 0.53
25 9 0.28
26 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAAATATAAATTATAATAAAATTTA
Found at i:64121 original size:26 final size:26
Alignment explanation
Indices: 64091--64145 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
64081 TTCAAACTTG
* *
64091 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTCGGATAAT
* *
64117 GATTATCATTGTTTGATTCGGATTAT
1 GATTATCAATGTTTGATTCGGATAAT
64143 GAT
1 GAT
64146 ATGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (26 bp):
GATTATCAATGTTTGATTCGGATAAT
Found at i:64153 original size:26 final size:26
Alignment explanation
Indices: 64091--64154 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
64081 TTCAAACTTG
*
64091 GATTATTAA-TGTTTGATTTGGATAAT
1 GATTA-TAATTGTTTGATTCGGATAAT
* *
64117 GATTATCATTGTTTGATTCGGATTAT
1 GATTATAATTGTTTGATTCGGATAAT
64143 GA-TATGAATTGT
1 GATTAT-AATTGT
64155 GACTTTGTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 5 0.16
26 27 0.84
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.48
Consensus pattern (26 bp):
GATTATAATTGTTTGATTCGGATAAT
Found at i:66738 original size:18 final size:17
Alignment explanation
Indices: 66715--66748 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
66705 AATTAACGTT
66715 TATTCTAGATGAAAAAAA
1 TATTCTAGAT-AAAAAAA
*
66733 TATTCTATATAAAAAA
1 TATTCTAGATAAAAAA
66749 GCATATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (17 bp):
TATTCTAGATAAAAAAA
Found at i:67741 original size:23 final size:23
Alignment explanation
Indices: 67687--67735 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
67677 GTTCAATTCA
67687 TTTAACATTCACGAACATATGCG
1 TTTAACATTCACGAACATATGCG
* * *
67710 TTTAACATTCATGAATATATTCG
1 TTTAACATTCACGAACATATGCG
67733 TTT
1 TTT
67736 GGCATTTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (23 bp):
TTTAACATTCACGAACATATGCG
Found at i:67848 original size:21 final size:23
Alignment explanation
Indices: 67807--67848 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
67797 CCACTAATCC
67807 TTAAGCTCTAAAAGTTTCACAGT
1 TTAAGCTCTAAAAGTTTCACAGT
*
67830 TTAAGCT-TCAAAG-TTCACA
1 TTAAGCTCTAAAAGTTTCACA
67849 TTGTGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (23 bp):
TTAAGCTCTAAAAGTTTCACAGT
Found at i:70694 original size:21 final size:21
Alignment explanation
Indices: 70652--70694 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
70642 TTTCTGGGCT
* *
70652 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
70673 AGGGGAATCGATCCCCCCTCA
1 AGGGGAATCGATACCCACTCA
70694 A
1 A
70695 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:71883 original size:30 final size:30
Alignment explanation
Indices: 71849--71909 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
71839 GTTCTTCGGA
71849 ACCTATGGATAGTTACCGAGGATCTTTATG
1 ACCTATGGATAGTTACCGAGGATCTTTATG
71879 ACCTATGGATAGTTACCGAGGATCTTTATG
1 ACCTATGGATAGTTACCGAGGATCTTTATG
71909 A
1 A
71910 AGAATGCCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (30 bp):
ACCTATGGATAGTTACCGAGGATCTTTATG
Found at i:76871 original size:11 final size:11
Alignment explanation
Indices: 76855--76879 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
76845 CAAATAATAG
76855 TTAATAATATT
1 TTAATAATATT
76866 TTAATAATATT
1 TTAATAATATT
76877 TTA
1 TTA
76880 CAGTTCAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TTAATAATATT
Found at i:77948 original size:211 final size:211
Alignment explanation
Indices: 77584--78003 Score: 822
Period size: 211 Copynumber: 2.0 Consensus size: 211
77574 GAATCACTGG
77584 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
1 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
77649 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
66 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
77714 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
131 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
77779 TGAATTTCTTTGGAGT
196 TGAATTTCTTTGGAGT
77795 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
1 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
*
77860 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATTGCTCATTCCCTTGTTGATAAT
66 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
77925 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
131 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
*
77990 TGAATTTTTTTGGA
196 TGAATTTCTTTGGA
78004 TTAGTTATGC
Statistics
Matches: 207, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
211 207 1.00
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (211 bp):
AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
TGAATTTCTTTGGAGT
Found at i:83123 original size:21 final size:23
Alignment explanation
Indices: 83089--83132 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
83079 ATTTCCAATC
*
83089 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
83112 ATATTCT-T-AAATTAAATTAAT
1 ATATTCTATAAAATTAAATTAAT
83133 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:83319 original size:14 final size:14
Alignment explanation
Indices: 83300--83328 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
83290 TATTAATATT
83300 TAAACTATAAATTA
1 TAAACTATAAATTA
83314 TAAACTATAAATTA
1 TAAACTATAAATTA
83328 T
1 T
83329 TATATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAACTATAAATTA
Found at i:85333 original size:34 final size:33
Alignment explanation
Indices: 85273--85348 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
85263 AAATTATTTA
* *
85273 TATAATTTATAAATATAATAATAATAT-TTAAAT
1 TATAAATTATAAATATAATAAGAATATATT-AAT
*
85306 TATAAATTATAAAATATCATAAGAATATATTAAT
1 TATAAATTAT-AAATATAATAAGAATATATTAAT
85340 T-TAAATTAT
1 TATAAATTAT
85349 CATTGTTTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 17 0.45
34 19 0.50
35 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (33 bp):
TATAAATTATAAATATAATAAGAATATATTAAT
Found at i:85373 original size:26 final size:26
Alignment explanation
Indices: 85344--85394 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
85334 ATTAATTTAA
85344 ATTATCATTGTTTGATTTAGATAATG
1 ATTATCATTGTTTGATTTAGATAATG
*
85370 ATTATCATTGTTTGATTTGGATAAT
1 ATTATCATTGTTTGATTTAGATAAT
85395 TTATTCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.51
Consensus pattern (26 bp):
ATTATCATTGTTTGATTTAGATAATG
Found at i:85491 original size:26 final size:26
Alignment explanation
Indices: 85438--85492 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
85428 GGATTATTAA
* *
85438 TGTTTGATTTGGATAATGATTAGCAT
1 TGTTTGATTCGGATAATGATTAGAAT
*
85464 TGTTTGATTCGGATTATGATGT-GAAT
1 TGTTTGATTCGGATAATGAT-TAGAAT
85490 TGT
1 TGT
85493 GACTTTGTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.24, C:0.04, G:0.25, T:0.47
Consensus pattern (26 bp):
TGTTTGATTCGGATAATGATTAGAAT
Found at i:85928 original size:3 final size:3
Alignment explanation
Indices: 85922--85946 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
85912 GCTTGTTTTA
85922 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
85947 TTTTGTTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:93260 original size:20 final size:21
Alignment explanation
Indices: 93235--93303 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
93225 ATGTTTTTTT
93235 TAAATTAAATTAAAATA-TCA
1 TAAATTAAATTAAAATATTCA
** *
93255 TAAATTAAATTAATTTATTCT
1 TAAATTAAATTAAAATATTCA
* *
93276 TAAATTAAATTAAATTATTTA
1 TAAATTAAATTAAAATATTCA
93297 TATAATT
1 TA-AATT
93304 TATAAATATA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 15 0.37
21 22 0.54
22 4 0.10
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAATTAAATTAAAATATTCA
Found at i:93281 original size:21 final size:21
Alignment explanation
Indices: 93234--93294 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
93224 GATGTTTTTT
*
93234 TTAAATTAAATTAAAATA-TC
1 TTAAATTAAATTAAATTATTC
* *
93254 ATAAATTAAATTAATTTATTC
1 TTAAATTAAATTAAATTATTC
93275 TTAAATTAAATTAAATTATT
1 TTAAATTAAATTAAATTATT
93295 TATATAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 15 0.43
21 20 0.57
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (21 bp):
TTAAATTAAATTAAATTATTC
Found at i:93385 original size:26 final size:26
Alignment explanation
Indices: 93356--93450 Score: 92
Period size: 25 Copynumber: 3.8 Consensus size: 26
93346 TAAGAATATA
*
93356 TTAATTTAAATTATATTAATATATTC
1 TTAAATTAAATTATATTAATATATTC
93382 TTAAATTAAATTAT-TCTAATAT-TAT-
1 TTAAATTAAATTATAT-TAATATAT-TC
* ** *
93407 TTAAAATATTTTATA-TAATTTATTC
1 TTAAATTAAATTATATTAATATATTC
93432 TTAAATTAAATTA-ATTAAT
1 TTAAATTAAATTATATTAAT
93451 TTATATAATT
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
24 7 0.13
25 28 0.51
26 20 0.36
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (26 bp):
TTAAATTAAATTATATTAATATATTC
Found at i:93431 original size:34 final size:34
Alignment explanation
Indices: 93361--93463 Score: 93
Period size: 34 Copynumber: 2.9 Consensus size: 34
93351 ATATATTAAT
* * *
93361 TTAAATTATATTAATATATTCTTAAATTAAATTATTC
1 TTAAATTAT-TTAAAATATT-TTATA-TAATTTATTC
93398 -TAATATTATTTAAAATATTTTATATAATTTATTC
1 TTAA-ATTATTTAAAATATTTTATATAATTTATTC
* * *
93432 TTAAATTAAATT-AATTAATTTATATAATTTAT
1 TTAAATT-ATTTAAAATATTTTATATAATTTAT
93464 AATATAATAA
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
34 30 0.53
35 10 0.18
36 12 0.21
37 5 0.09
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (34 bp):
TTAAATTATTTAAAATATTTTATATAATTTATTC
Found at i:93725 original size:13 final size:14
Alignment explanation
Indices: 93702--93730 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
93692 ATAATAATAT
93702 TAATATTTAAATTA
1 TAATATTTAAATTA
93716 TAAT-TTTAAATTA
1 TAATATTTAAATTA
93729 TA
1 TA
93731 TTAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATTTAAATTA
Found at i:93790 original size:49 final size:47
Alignment explanation
Indices: 93726--93832 Score: 133
Period size: 49 Copynumber: 2.2 Consensus size: 47
93716 TAATTTTAAA
*
93726 TTATATTAATATATTCTTAAATTAAATTGATTTAAATTATTATAATATTT
1 TTATA-TAATATATTCTTAAATTAAATT-AATTAAATTA-TATAATATTT
* * *
93776 TTATATAATTTATTCTTAAATTGAATTAATTAATTTATATAATATTT
1 TTATATAATATATTCTTAAATTAAATTAATTAAATTATATAATATTT
**
93823 AAATATAATA
1 TTATATAATA
93833 AGGATTAAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
47 17 0.34
48 8 0.16
49 20 0.40
50 5 0.10
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (47 bp):
TTATATAATATATTCTTAAATTAAATTAATTAAATTATATAATATTT
Found at i:94085 original size:13 final size:13
Alignment explanation
Indices: 94067--94091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94057 TAATATTAAT
94067 ATTTAAATTATAG
1 ATTTAAATTATAG
94080 ATTTAAATTATA
1 ATTTAAATTATA
94092 TTAATATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
ATTTAAATTATAG
Found at i:94152 original size:19 final size:20
Alignment explanation
Indices: 94108--94158 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
94098 TGTTCTAAAC
94108 ATAA-ATAATTTAAATTATT
1 ATAATATAATTTAAATTATT
*
94127 ATAATATTATTTAAA-TATT
1 ATAATATAATTTAAATTATT
* *
94146 TTTATATAATTTA
1 ATAATATAATTTA
94159 TTTTTAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATAATATAATTTAAATTATT
Found at i:94178 original size:21 final size:21
Alignment explanation
Indices: 94152--94194 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
94142 TATTTTTATA
*
94152 TAATTTATTTTTAAATTAAAT
1 TAATTTATTCTTAAATTAAAT
94173 TAATTTATTCTTAAATTAAAT
1 TAATTTATTCTTAAATTAAAT
94194 T
1 T
94195 GTTTATATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATTTATTCTTAAATTAAAT
Found at i:95305 original size:21 final size:23
Alignment explanation
Indices: 95271--95314 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
95261 ATTTCCAATC
*
95271 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
95294 ATATTCT-T-AAATTAAATTAAT
1 ATATTCTATAAAATTAAATTAAT
95315 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:97684 original size:26 final size:26
Alignment explanation
Indices: 97654--97708 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
97644 TTCAAACTTG
* *
97654 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTCGGATAAT
* *
97680 GATTATCATTGTTTGATTCGGATTAT
1 GATTATCAATGTTTGATTCGGATAAT
97706 GAT
1 GAT
97709 ATGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (26 bp):
GATTATCAATGTTTGATTCGGATAAT
Found at i:97716 original size:26 final size:26
Alignment explanation
Indices: 97654--97717 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
97644 TTCAAACTTG
*
97654 GATTATTAA-TGTTTGATTTGGATAAT
1 GATTA-TAATTGTTTGATTCGGATAAT
* *
97680 GATTATCATTGTTTGATTCGGATTAT
1 GATTATAATTGTTTGATTCGGATAAT
97706 GA-TATGAATTGT
1 GATTAT-AATTGT
97718 GACTTTGTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 5 0.16
26 27 0.84
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.48
Consensus pattern (26 bp):
GATTATAATTGTTTGATTCGGATAAT
Found at i:100309 original size:20 final size:18
Alignment explanation
Indices: 100268--100302 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
100258 AATTAACGTT
* *
100268 TATTCTAGATGAAAAAAA
1 TATTCTATATAAAAAAAA
100286 TATTCTATATAAAAAAA
1 TATTCTATATAAAAAAA
100303 GCATATTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (18 bp):
TATTCTATATAAAAAAAA
Found at i:101052 original size:23 final size:24
Alignment explanation
Indices: 101021--101065 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
101011 AAAATTGAAA
*
101021 ATTATTATTATTT-ATT-TATTTAG
1 ATTAATATT-TTTCATTGTATTTAG
101044 ATTAATATTTTTCATTGTATTT
1 ATTAATATTTTTCATTGTATTT
101066 TTGGTTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 3 0.16
23 11 0.58
24 5 0.26
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (24 bp):
ATTAATATTTTTCATTGTATTTAG
Found at i:101287 original size:23 final size:23
Alignment explanation
Indices: 101235--101288 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
101225 TAAATGTTCA
*
101235 ATTCATTTAACATTCACGAACAT
1 ATTCGTTTAACATTCACGAACAT
* ** *
101258 ATGCGTTTAACATTCGTGAATAT
1 ATTCGTTTAACATTCACGAACAT
101281 ATTCGTTT
1 ATTCGTTT
101289 GGCATTTGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (23 bp):
ATTCGTTTAACATTCACGAACAT
Found at i:101401 original size:21 final size:23
Alignment explanation
Indices: 101360--101401 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
101350 CCACTAATCC
101360 TTAAGCTCTAAAAGTTTCACAGT
1 TTAAGCTCTAAAAGTTTCACAGT
*
101383 TTAAGCT-TCAAAG-TTCACA
1 TTAAGCTCTAAAAGTTTCACA
101402 TTGTGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (23 bp):
TTAAGCTCTAAAAGTTTCACAGT
Found at i:104237 original size:21 final size:21
Alignment explanation
Indices: 104195--104237 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
104185 TTTCTGGGCT
* *
104195 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
104216 AGGGGAATCGATCCCCCCTCA
1 AGGGGAATCGATACCCACTCA
104237 A
1 A
104238 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:105403 original size:32 final size:31
Alignment explanation
Indices: 105362--105446 Score: 102
Period size: 30 Copynumber: 2.8 Consensus size: 31
105352 CTAAGGAACA
* * *
105362 TATGGATAGTTTACCTAGGTTCTTCGGGGACC
1 TATGGATAGTTTACCGAGGATCTT-GAGGACC
* *
105394 TATGGATAG-TTACCGAGGATCTTTATGACC
1 TATGGATAGTTTACCGAGGATCTTGAGGACC
105424 TATGGATAG-TTACCGAGGATCTT
1 TATGGATAGTTTACCGAGGATCTT
105447 TATGAAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 27 0.56
31 12 0.25
32 9 0.19
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (31 bp):
TATGGATAGTTTACCGAGGATCTTGAGGACC
Found at i:105426 original size:30 final size:30
Alignment explanation
Indices: 105390--105451 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
105380 GTTCTTCGGG
105390 GACCTATGGATAGTTACCGAGGATCTTTAT
1 GACCTATGGATAGTTACCGAGGATCTTTAT
105420 GACCTATGGATAGTTACCGAGGATCTTTAT
1 GACCTATGGATAGTTACCGAGGATCTTTAT
105450 GA
1 GA
105452 AGAATGCCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (30 bp):
GACCTATGGATAGTTACCGAGGATCTTTAT
Found at i:111478 original size:211 final size:209
Alignment explanation
Indices: 111114--111531 Score: 809
Period size: 211 Copynumber: 2.0 Consensus size: 209
111104 GAATCACTGG
111114 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
1 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
111179 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
66 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
111244 ACTTACCCTTTTCCTCTTGATTTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
131 ACTTACCCTTTTCCTCTTGA-TTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTT
111309 TGAATTTCTTTGGAGT
195 TGAATTT-TTTGGAGT
111325 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
1 AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
*
111390 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATTGCTCATTCCCTTGTTGATAAT
66 CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
111455 ACTTACCCTTTTCCTCTTGATTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTTT
131 ACTTACCCTTTTCCTCTTGATTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTTT
111520 GAATTTTTTGGA
196 GAATTTTTTGGA
111532 TTAGTTATGC
Statistics
Matches: 206, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
209 6 0.03
210 51 0.25
211 149 0.72
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.41
Consensus pattern (209 bp):
AAGGAGTTTTTGATTTTTCAATTGGATAACCCGGACCGTAAATACCTTTGTGCAGGATCCTCCTT
CATCAAGATTCACTTGGAAGATTGATAACTTCTCTAGGTACATCGCTCATTCCCTTGTTGATAAT
ACTTACCCTTTTCCTCTTGATTTTTGTTTTGGAGATAGTAGTTGAGTATTCATATTCTTGGGTTT
GAATTTTTTGGAGT
Found at i:116636 original size:21 final size:23
Alignment explanation
Indices: 116602--116645 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
116592 ATTTCCAATC
*
116602 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
116625 ATATTCT-T-AAATTAAATTAAT
1 ATATTCTATAAAATTAAATTAAT
116646 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:116828 original size:14 final size:14
Alignment explanation
Indices: 116809--116837 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
116799 AATAAATATT
116809 TAAACTATAAATTA
1 TAAACTATAAATTA
116823 TAAACTATAAATTA
1 TAAACTATAAATTA
116837 T
1 T
116838 TATATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAACTATAAATTA
Found at i:118837 original size:34 final size:32
Alignment explanation
Indices: 118777--118851 Score: 89
Period size: 34 Copynumber: 2.3 Consensus size: 32
118767 AAATTATTTA
* * *
118777 TATAATTTATAAATATAATAATAATATTTAAAT
1 TATAAATTATAAATATAATAAGAATATAT-AAT
*
118810 TATAAATTATAAAATATCATAAGAATATATAAT
1 TATAAATTAT-AAATATAATAAGAATATATAAT
118843 T-TAAATTAT
1 TATAAATTAT
118852 CATTGTTTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 8 0.22
33 13 0.35
34 16 0.43
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (32 bp):
TATAAATTATAAATATAATAAGAATATATAAT
Found at i:118894 original size:25 final size:26
Alignment explanation
Indices: 118847--118896 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
118837 TATAATTTAA
118847 ATTATCATTGTTTGATTTAGATAATG
1 ATTATCATTGTTTGATTTAGATAATG
*
118873 ATTATCATTG-TTGATTTGGATAAT
1 ATTATCATTGTTTGATTTAGATAAT
118897 TTATTCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.50
Consensus pattern (26 bp):
ATTATCATTGTTTGATTTAGATAATG
Found at i:118961 original size:26 final size:26
Alignment explanation
Indices: 118931--118985 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
118921 TTCAAACTTG
* *
118931 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTCGGATAAT
* *
118957 GATTATCATTGTTTGATTCGGATTAT
1 GATTATCAATGTTTGATTCGGATAAT
118983 GAT
1 GAT
118986 GTGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (26 bp):
GATTATCAATGTTTGATTCGGATAAT
Done.