genome.fa.s763.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000763.1 Hibiscus syriacus cultivar Beakdansim tig00001480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47117

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99--151	19	2.6	21	79	11	65	37	3	24	33	1.74
1920--1983	25	2.4	27	92	5	105	26	18	17	37	1.93
6166--6198	2	17.0	2	87	6	50	54	0	0	45	0.99
6847--6893	2	24.5	2	87	8	71	46	0	2	51	1.13
12840--12891	21	2.5	21	81	3	61	38	19	25	17	1.93
13531--13572	19	2.2	19	91	0	66	52	26	16	4	1.63
13568--13638	19	3.7	19	92	3	115	11	18	22	47	1.80
13573--13649	39	2.0	39	84	5	102	9	18	25	46	1.78
13621--13705	33	2.5	33	88	1	125	12	23	24	38	1.90
14861--14945	19	4.5	19	84	5	102	38	23	23	14	1.91
14993--15050	14	3.9	14	75	16	62	12	17	22	48	1.80
14979--15066	32	2.7	33	91	3	151	13	19	20	46	1.83
15051--15105	20	2.8	19	83	8	65	16	23	23	36	1.94
15587--15631	18	2.5	18	88	0	72	13	15	44	26	1.83
16942--16984	20	2.2	20	95	0	77	53	18	18	9	1.70
17495--17608	20	5.7	20	80	2	111	25	17	25	31	1.97
17553--17653	20	4.9	21	71	12	59	20	19	16	42	1.89
17475--17612	41	3.4	41	76	2	116	24	16	23	34	1.95
17581--17690	41	2.7	41	88	5	134	20	23	17	38	1.93
17598--17690	20	4.5	21	78	4	100	19	24	16	39	1.91
18630--18678	18	2.8	18	78	3	55	51	6	6	36	1.52
19299--19347	25	2.0	25	84	4	64	57	4	4	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24054--24078	2	12.5	2	100	0	50	48	0	0	52	1.00
27431--27478	25	2.0	23	84	11	62	39	16	8	35	1.79
32197--32618	54	7.8	54	94	1	695	31	13	17	36	1.89
33970--34042	31	2.3	33	84	11	91	32	0	5	61	1.19
34216--34269	17	3.2	17	78	0	63	31	0	1	66	1.02
39986--40064	31	2.5	31	79	0	86	50	15	11	22	1.75
42186--42223	2	19.0	2	100	0	76	50	0	0	50	1.00
42353--42410	29	2.0	29	100	0	116	44	6	24	24	1.77

Tables:   1

The End!