genome.fa.s7630.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007630.1 Hibiscus syriacus cultivar Beakdansim tig00023656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45813

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8029--8152	32	3.9	32	85	5	153	15	30	36	17	1.91
8215--8318	31	3.3	32	68	15	92	11	34	40	13	1.81
8193--8325	63	2.1	62	95	2	241	10	37	38	13	1.79
7954--8314	186	1.9	189	83	8	479	12	34	35	16	1.87
8123--8406	156	1.8	154	86	7	414	12	37	34	15	1.85
8371--8502	32	4.2	32	92	3	205	14	31	36	18	1.90
8549--8637	33	2.8	32	82	1	115	14	28	37	20	1.92
16758--16942	94	2.0	95	89	3	284	11	36	35	16	1.86
16906--17039	32	4.2	32	88	1	187	15	30	35	17	1.92
16938--17352	158	2.6	158	81	6	520	13	34	34	17	1.89
17096--17200	32	3.3	32	68	13	101	11	34	40	13	1.80
17074--17207	63	2.1	63	97	1	252	10	37	38	13	1.79
17254--17386	32	4.2	32	88	6	191	13	31	36	18	1.89
17261--17384	62	2.0	62	90	3	196	13	29	37	19	1.90
17431--17519	33	2.8	32	82	1	115	14	28	37	20	1.92
25806--25937	32	4.2	32	87	3	178	15	31	34	18	1.92
25996--26099	31	3.3	32	68	15	92	11	34	40	13	1.81
25973--26106	62	2.1	63	97	1	252	10	37	38	13	1.79
25731--26095	189	1.9	189	85	6	499	12	34	35	17	1.88
26152--26283	32	4.2	32	92	3	205	14	31	36	18	1.90
25837--26254	157	2.6	159	80	9	514	13	34	34	17	1.89
25837--26418	157	3.6	154	74	12	423	13	34	33	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26330--26418	33	2.8	32	82	1	115	14	28	37	20	1.92
34715--34846	32	4.2	32	88	3	187	15	31	34	18	1.92
34715--34846	65	2.1	62	87	4	183	15	31	34	18	1.92
34904--35005	31	3.4	31	68	18	97	11	35	39	13	1.82
34881--35012	61	2.1	62	97	1	248	10	37	37	13	1.80
34809--35094	155	1.8	156	89	5	454	12	37	34	15	1.85
35059--35190	32	4.2	32	89	6	189	14	31	36	18	1.90
35059--35190	63	2.1	64	88	4	196	14	31	36	18	1.90
34598--35251	344	1.9	345	94	1	1170	13	35	33	17	1.89
35238--35322	32	2.8	29	79	11	98	15	27	36	21	1.93
43468--43649	91	2.0	93	87	4	269	12	36	34	17	1.86
43613--43743	32	4.2	32	87	3	169	16	29	35	18	1.92
43468--43847	92	4.1	93	69	12	305	13	36	33	17	1.88
43777--43909	62	2.1	62	95	2	241	10	37	39	12	1.78
43795--43902	31	3.5	31	69	15	89	11	33	41	13	1.80
43709--43991	156	1.8	153	87	8	421	12	36	35	15	1.85
43956--44087	32	4.2	32	92	3	205	14	31	36	18	1.90
44134--44221	33	2.7	31	81	6	113	14	28	36	20	1.92

Tables:   1

The End!