Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007631.1 Hibiscus syriacus cultivar Beakdansim tig00023668_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56310
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Found at i:6496 original size:94 final size:93
Alignment explanation
Indices: 6343--6727 Score: 361
Period size: 94 Copynumber: 4.1 Consensus size: 93
6333 TGCGAGGCTG
* ** *
6343 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGTTGCCGAGGCACCCG
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCG
6408 TCGGGTGTTGCCGATGGTGACCGAGGCCC
66 TCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
6437 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCG
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCG
* *
6502 TCGGGGTTGCCGATGGTGACCGAGACAC
66 TCGGGGTTGCCGATGGTGACCGAGGCCC
****** * ** ** * *** * *
6530 CCGTC-TGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAAT-GG-TGACCGAGG
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCC--TGGGTTG-CCGAGG
* *
6590 CCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
60 -CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
6626 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCC
6690 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
65 GTC-GGGGTTGCCGATGGTGACCGAGGCCC
6720 CCGCACCC
1 CCGCACCC
6728 GTGGCCTGGG
Statistics
Matches: 222, Mismatches: 52, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
92 12 0.05
93 35 0.16
94 105 0.47
95 32 0.14
96 38 0.17
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (93 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCG
TCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:6525 original size:31 final size:32
Alignment explanation
Indices: 6490--6621 Score: 178
Period size: 31 Copynumber: 4.2 Consensus size: 32
6480 GCCTGGGTTG
* *
6490 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
6521 CCGAGACACCCGTCT-GGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
6552 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
6584 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
6617 CCGAG
1 CCGAG
6622 CCTCACGCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
31 43 0.48
32 19 0.21
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:6775 original size:188 final size:188
Alignment explanation
Indices: 6415--6777 Score: 504
Period size: 188 Copynumber: 1.9 Consensus size: 188
6405 CCGTCGGGTG
* *
6415 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
* ** *
6480 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGTTTGCCG
66 GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGACCCGTTGGCCG
*
6545 ATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 A-GGTGACCGAGACACCCGTCTGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
6604 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
6667 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCGCACCCG-TG
65 GGCCT-GGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCG-ACCCGTTG
* * *
6731 GCCTG-GGTTG-CCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGG
127 GCC-GAGG-TGACCGAGACACCCGTCTGGCGTTGCCAATGGTGACCGAGG
6778 ACCCCGCACC
Statistics
Matches: 155, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
188 62 0.40
189 57 0.37
190 33 0.21
191 3 0.02
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (188 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGACCCGTTGGCCG
AGGTGACCGAGACACCCGTCTGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:6776 original size:155 final size:156
Alignment explanation
Indices: 6584--6869 Score: 438
Period size: 155 Copynumber: 1.8 Consensus size: 156
6574 CCAATGGTGA
*
6584 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGTTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGACC-C-CGCACCCAACGCTC-GCTCT
* * *
6646 GTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
6711 CCGAGGCCCCCGCACCCGTGGCCTGGGTTG
127 CCGAGGCCCCCGCACCCGTGGCCTGGGTTG
* * *
6741 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGCTCTGTC
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGACCCCGCACCCAACGCTCGCTCTGTC
6804 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
6869 G
131 G
6870 ACACCCGTCT
Statistics
Matches: 119, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
154 22 0.18
155 72 0.61
156 17 0.14
157 8 0.07
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (156 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGACCCCGCACCCAACGCTCGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGCCTGGGTTG
Found at i:6783 original size:61 final size:63
Alignment explanation
Indices: 6656--6788 Score: 243
Period size: 61 Copynumber: 2.1 Consensus size: 63
6646 GTGCGGCACT
*
6656 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
6719 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
6780 CCCGCACCC
1 CCCGCACCC
6789 AACTCTCGCT
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
61 33 0.48
62 20 0.29
63 16 0.23
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:6893 original size:32 final size:32
Alignment explanation
Indices: 6834--6965 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
6824 CCTGGGGTTG
* *
6834 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
6865 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
6897 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
6929 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
6961 CCGAG
1 CCGAG
6966 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:7088 original size:33 final size:32
Alignment explanation
Indices: 7011--7099 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
7001 CTCACCAATG
*
7011 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
7043 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
7076 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
7100 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:15430 original size:95 final size:94
Alignment explanation
Indices: 15275--15661 Score: 379
Period size: 95 Copynumber: 4.1 Consensus size: 94
15265 TGCGAGGCTG
* ** *
15275 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
15340 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
15370 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
15435 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
15464 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
15526 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
15561 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
15625 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
15654 CCGCACCC
1 CCGCACCC
15662 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 59, Indels: 25
0.72 0.19 0.08
Matches are distributed among these distances:
93 25 0.11
94 50 0.23
95 99 0.45
96 24 0.11
97 23 0.10
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:15483 original size:32 final size:32
Alignment explanation
Indices: 15424--15556 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
15414 CCTGGGGTTG
* *
15424 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
15455 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
15487 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
15519 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
15552 CCGAG
1 CCGAG
15557 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:15544 original size:65 final size:63
Alignment explanation
Indices: 15424--15556 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
15414 CCTGGGGTTG
* * * * *
15424 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
15487 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
15552 CCGAG
1 CCGAG
15557 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:15649 original size:31 final size:31
Alignment explanation
Indices: 15614--15716 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
15604 CCTGGGGTTG
15614 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** * *
15645 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCC-GATGG-TGA
15676 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
15707 CCGAGG-ACCC
1 CCGAGGCACCC
15717 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 8 0.15
31 42 0.78
32 4 0.07
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:15667 original size:62 final size:62
Alignment explanation
Indices: 15591--15723 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
15581 GTGCGGCACT
*
15591 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
15653 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
15715 CCCGCACCC
1 CCCGCACCC
15724 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:15748 original size:156 final size:158
Alignment explanation
Indices: 15519--15806 Score: 451
Period size: 156 Copynumber: 1.8 Consensus size: 158
15509 CCAATGGTGA
* *
15519 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
15584 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
15648 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
15676 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
15737 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
15802 CCGAG
128 CCGAG
15807 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
155 24 0.20
156 66 0.55
157 30 0.25
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:15812 original size:32 final size:32
Alignment explanation
Indices: 15770--15902 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
15760 CCTGGGGTTG
* *
15770 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
15802 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
15834 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
15866 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
15898 CCGAG
1 CCGAG
15903 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:15953 original size:346 final size:347
Alignment explanation
Indices: 15306--15963 Score: 1185
Period size: 346 Copynumber: 1.9 Consensus size: 347
15296 GTGCGGCACT
*
15306 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
* * *
15371 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
15436 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
131 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
15501 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
196 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
**
15566 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG
261 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGG
15631 GTTGCCGATGGTGACCGAGGCC
326 GTTGCCGATGGTGACCGAGGCC
** *
15653 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG-GTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
15717 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
15782 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
131 TC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
* *
15847 CTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGC
195 CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
*
15911 ACCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
260 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
15964 TGGTGACCGA
Statistics
Matches: 298, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
346 163 0.55
347 135 0.45
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (347 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGG
GTTGCCGATGGTGACCGAGGCC
Found at i:16026 original size:33 final size:32
Alignment explanation
Indices: 15949--16037 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
15939 CTCACCAATG
*
15949 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
15981 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
16014 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
16038 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:24379 original size:95 final size:95
Alignment explanation
Indices: 24224--24612 Score: 383
Period size: 95 Copynumber: 4.1 Consensus size: 95
24214 TGCGAGGCTG
* ** *
24224 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
24289 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
24319 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
24384 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
24414 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
24476 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
24511 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
24575 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
24605 CCGCACCC
1 CCGCACCC
24613 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 62, Indels: 22
0.72 0.20 0.07
Matches are distributed among these distances:
94 32 0.14
95 125 0.57
96 34 0.15
97 30 0.14
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:24409 original size:32 final size:32
Alignment explanation
Indices: 24373--24506 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
24363 CCTGGGGTTG
* * *
24373 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
24405 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
24437 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
24469 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
24502 CCGAG
1 CCGAG
24507 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:24600 original size:32 final size:32
Alignment explanation
Indices: 24564--24668 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
24554 CCTGGGGTTG
24564 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
24596 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
24627 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
24659 CCGAGG-ACCC
1 CCGAGGCACCC
24669 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:24619 original size:63 final size:63
Alignment explanation
Indices: 24541--24675 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
24531 GTGCGGCACT
*
24541 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
24604 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
24667 CCCGCACCC
1 CCCGCACCC
24676 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:24633 original size:31 final size:31
Alignment explanation
Indices: 24541--24638 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
24531 GTGCGGCACT
24541 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
24572 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
24604 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
24635 CCCG
1 CCCG
24639 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:24764 original size:32 final size:32
Alignment explanation
Indices: 24722--24854 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
24712 CCTGGGGTTG
* *
24722 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
24754 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
24786 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
24818 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
24850 CCGAG
1 CCGAG
24855 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:24805 original size:158 final size:159
Alignment explanation
Indices: 24405--24825 Score: 532
Period size: 158 Copynumber: 2.7 Consensus size: 159
24395 CCGATGGTGA
* * * *
24405 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
24470 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
24534 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
24564 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * *
24626 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
24688 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
24722 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
24787 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
24826 ACCCGCCTGG
Statistics
Matches: 221, Mismatches: 31, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
157 32 0.14
158 104 0.47
159 85 0.38
ACGTcount: A:0.13, C:0.34, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:24978 original size:33 final size:32
Alignment explanation
Indices: 24901--24989 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
24891 CTCACCAATG
*
24901 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
24933 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
24966 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
24990 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:33358 original size:32 final size:32
Alignment explanation
Indices: 33322--33455 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
33312 CCTGGGGTTG
* * *
33322 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
33354 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
33386 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
33418 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
33451 CCGAG
1 CCGAG
33456 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:33548 original size:32 final size:32
Alignment explanation
Indices: 33512--33616 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
33502 GCCTGGGTTG
33512 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
33544 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
33575 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
33607 CCGAGG-ACCC
1 CCGAGGCACCC
33617 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:33566 original size:62 final size:63
Alignment explanation
Indices: 33490--33623 Score: 252
Period size: 63 Copynumber: 2.1 Consensus size: 63
33480 GTGCGGCACT
*
33490 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
33552 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
33615 CCCGCACCC
1 CCCGCACCC
33624 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 16 0.23
63 54 0.77
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:33652 original size:157 final size:156
Alignment explanation
Indices: 33418--33704 Score: 445
Period size: 157 Copynumber: 1.8 Consensus size: 156
33408 CCAATGGTGA
* * *
33418 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
33483 CGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGA
66 CGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGA
33548 GGCCCCCGCACCCGTGGCCTGGGGTTG
130 GGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
33575 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
33637 GTCCGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACC
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACC
33702 GAG
128 GAG
33705 ACACCCGTCT
Statistics
Matches: 119, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
156 53 0.45
157 64 0.54
158 2 0.02
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (156 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAG
GCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:33710 original size:31 final size:32
Alignment explanation
Indices: 33669--33799 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
33659 GCCTGGGTTG
*
33669 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
33700 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
33732 CCGAGAC-CCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
33763 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
33795 CCGAG
1 CCGAG
33800 CCTCACGCAC
Statistics
Matches: 92, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
31 42 0.46
32 44 0.48
33 6 0.07
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:33728 original size:32 final size:32
Alignment explanation
Indices: 33669--33799 Score: 196
Period size: 31 Copynumber: 4.2 Consensus size: 32
33659 GCCTGGGTTG
* *
33669 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
33700 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
33732 CCGAGAC-CCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
33763 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
33795 CCGAG
1 CCGAG
33800 CCTCACGCAC
Statistics
Matches: 93, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
31 42 0.45
32 42 0.45
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:33759 original size:156 final size:158
Alignment explanation
Indices: 33354--33770 Score: 510
Period size: 156 Copynumber: 2.7 Consensus size: 158
33344 CCGATGGTGA
* * * *
33354 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
33419 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
33483 CGGCACTCCCGCACCCGTGGCCTGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGTTG
* * * *** * *
33512 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * *
33574 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
33636 TGTCCGGAACTCCCGCACCCGTGGCCTGGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGTTG
*
33669 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
33733 CGAGAC-CCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
33771 ACCCGCCTGG
Statistics
Matches: 218, Mismatches: 31, Indels: 23
0.80 0.11 0.08
Matches are distributed among these distances:
155 2 0.01
156 91 0.42
157 82 0.38
158 43 0.20
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.18
Consensus pattern (158 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGTTG
Found at i:33786 original size:63 final size:62
Alignment explanation
Indices: 33677--33799 Score: 194
Period size: 63 Copynumber: 2.0 Consensus size: 62
33667 TGCCGAGCCA
*
33677 CCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGAC
1 CCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGCCTGGGTTTGCCGATGGTGACCGAGAC
* *
33739 CCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAG
1 CCCGTC-GGGGTTGCCGATGGTGACCGA-GACACCCGCCTGGGTTTGCCGATGGTGACCGAG
33800 CCTCACGCAC
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
62 6 0.11
63 38 0.68
64 12 0.21
ACGTcount: A:0.13, C:0.30, G:0.37, T:0.20
Consensus pattern (62 bp):
CCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGCCTGGGTTTGCCGATGGTGACCGAGAC
Found at i:33809 original size:156 final size:155
Alignment explanation
Indices: 33354--33933 Score: 435
Period size: 156 Copynumber: 3.6 Consensus size: 155
33344 CCGATGGTGA
* * * * *
33354 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *
33419 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG-
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC-CACCCACCAAAGTTCGG--ATGTGC
33483 CGGCACTCCCGCACCCGTGGCCTGGGTTG
128 CGGC-CTCCCGCACCCGTGGCCTGGGTTG
* * * *** * *
33512 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * * * * *
33574 G-CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-CCGCACCCAACTCTCGGCTC
63 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG-CCACC-CACCAAAGT-TCGGATG
*
33636 TGTCCGGAACTCCCGCACCCGTGGCCTGGGTTG
125 TG-CCGG-CCTCCCGCACCCGTGGCCTGGGTTG
33669 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *** *
33733 CGA-GAC-CCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGTTGCCGATGGTGAC
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTT-CGGAT-GTG-C
* * * **
33796 CGAGCCTCACGCACCAACGCTCGGTTCTGTGCGG
128 CG-GCCTCCCGCACC--CG-T-GG-CCTGGGTTG
*** ** * *
33830 CACTCCCTCACCAAT-GGCCTGGGTTGCCGATGGTGACCGAGACACCCGTATGGTTTTGCCGATG
1 C-CGAGC-CACCCGTCGG---GGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATG
33894 GTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
61 GTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
33934 GGGCTCACGC
Statistics
Matches: 333, Mismatches: 58, Indels: 52
0.75 0.13 0.12
Matches are distributed among these distances:
154 1 0.00
155 14 0.04
156 110 0.33
157 71 0.21
158 43 0.13
159 1 0.00
160 2 0.01
161 6 0.02
162 2 0.01
163 6 0.02
166 50 0.15
167 2 0.01
168 25 0.08
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (155 bp):
CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTTCGGATGTGCCGG
CCTCCCGCACCCGTGGCCTGGGTTG
Found at i:33922 original size:33 final size:31
Alignment explanation
Indices: 33846--33933 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
33836 CTCACCAATG
33846 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
33877 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
33910 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
33934 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:42245 original size:32 final size:32
Alignment explanation
Indices: 42209--42342 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
42199 CCTGGGGTTG
* * *
42209 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
42241 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
42273 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
42305 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
42338 CCGAG
1 CCGAG
42343 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:42455 original size:63 final size:62
Alignment explanation
Indices: 42377--42510 Score: 250
Period size: 63 Copynumber: 2.1 Consensus size: 62
42367 GTGCGGCACT
*
42377 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGAC
42440 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
42502 CCCGCACCC
1 CCCGCACCC
42511 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 33 0.47
63 37 0.53
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:42469 original size:31 final size:31
Alignment explanation
Indices: 42377--42474 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
42367 GTGCGGCACT
42377 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
42408 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
42440 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
42471 CCCG
1 CCCG
42475 TCGGGGTTGC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:42498 original size:31 final size:32
Alignment explanation
Indices: 42400--42503 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
42390 CCTGGGGTTG
*
42400 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
42432 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
42463 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
42494 CCGAGG-ACCC
1 CCGAGGCACCC
42504 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 7 0.13
31 32 0.59
32 15 0.28
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:42498 original size:94 final size:95
Alignment explanation
Indices: 42400--42630 Score: 231
Period size: 94 Copynumber: 2.4 Consensus size: 95
42390 CCTGGGGTTG
* * *
42400 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAG-GCCCCCGCACCCGTGGCCTGGGGTTGC
1 CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCT-GGGTTGC
*
42464 CGAGGCACCCGTC-GGGGTTGCCGATGGTGA
65 CGAGCCACCCGTCGGGGGTTGCCGATGGTGA
* *** * * * * *
42494 CCGAGG-ACCCCGCACCCAACTCT-CGGCT-CTGTCCG-GAACTCCCGCACCCGTGGCCTGGGTT
1 CCGAGGCA-CCCG-TCCGGGCT-TGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGTT
42555 GCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
* * *
42588 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCC
1 CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGA-ACCC
42631 GTCTGGGTTT
Statistics
Matches: 102, Mismatches: 25, Indels: 18
0.70 0.17 0.12
Matches are distributed among these distances:
92 1 0.01
93 26 0.25
94 63 0.62
95 8 0.08
96 4 0.04
ACGTcount: A:0.13, C:0.36, G:0.35, T:0.16
Consensus pattern (95 bp):
CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGTTGCC
GAGCCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:42569 original size:156 final size:158
Alignment explanation
Indices: 42305--42592 Score: 451
Period size: 156 Copynumber: 1.8 Consensus size: 158
42295 CCAATGGTGA
* *
42305 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
42370 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
42435 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
42463 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
42524 GTCCGGAACTCCCGCACCCGTGGCCT-GGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
42588 CCGAG
128 CCGAG
42593 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
156 66 0.55
157 46 0.38
158 8 0.07
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:42598 original size:32 final size:32
Alignment explanation
Indices: 42556--42688 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
42546 GCCTGGGTTG
* *
42556 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
42588 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
42620 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
42652 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
42684 CCGAG
1 CCGAG
42689 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:42675 original size:64 final size:65
Alignment explanation
Indices: 42556--42822 Score: 217
Period size: 64 Copynumber: 4.0 Consensus size: 65
42546 GCCTGGGTTG
* * * * * *
42556 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
42620 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
* * **** ***
42684 CCGAGCCTCACGCACCAACG-CTCGG-TT-CTG-TGCG-GCACTCCCTCACCAATGGCCTGGG-T
1 CCGAG----A--CACC--CGTCTGGGTTTGCCGATG-GTG-A--CCGAGGCCACCCGCCTGGGAT
42743 TGCCGATGGTGA
54 TGCCGATGGTGA
* *
42755 CCGAGACACCCGTATGGTTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
42820 CCG
1 CCG
42823 GGGCTCACGC
Statistics
Matches: 159, Mismatches: 25, Indels: 37
0.72 0.11 0.17
Matches are distributed among these distances:
63 2 0.01
64 65 0.41
65 34 0.21
66 4 0.03
67 4 0.03
68 4 0.03
69 4 0.03
70 6 0.04
71 34 0.21
72 2 0.01
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (65 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
Found at i:42811 original size:33 final size:31
Alignment explanation
Indices: 42735--42822 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
42725 CTCACCAATG
42735 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
42766 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
42799 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
42823 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:42813 original size:347 final size:344
Alignment explanation
Indices: 42105--42748 Score: 1116
Period size: 347 Copynumber: 1.9 Consensus size: 344
42095 CACCAATGGA
*
42105 CTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTC
1 CTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
* * *
42170 GGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGA
66 GGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGA
42235 TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAAT
131 TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAAT
42300 GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
196 GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
** * *
42365 CTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGT
261 CTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGACACCCGTAGGGGGTTGCCGATGGT
42430 GACCGAGGCCCCCGCACCCGTGGC
326 GACCGAGG---CCGCACCC--GGC
42454 CTGGGGTTGCCGAGGCACCCGTCGGG-GTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
1 CTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
42518 GGCTCTGTCCGGAACTCCCGCACCCGTGGCCT-GGGTTGCCGAGCCACCCGTCGGGGGTTGCCGA
66 GGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGA
* *
42582 TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGAT
131 TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAAT
42647 GGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
196 GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
*
42711 CTGTGCGGCACTCCCTCACCAATGGCCT-GGGTTGCCGA
261 CTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
42749 TGGTGACCGA
Statistics
Matches: 286, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
345 10 0.03
346 65 0.23
347 118 0.41
348 67 0.23
349 26 0.09
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (344 bp):
CTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTC
GGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGA
TGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAAT
GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTT
CTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGACACCCGTAGGGGGTTGCCGATGGT
GACCGAGGCCGCACCCGGC
Found at i:51209 original size:32 final size:32
Alignment explanation
Indices: 51150--51282 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
51140 GCCTGGGTTG
* *
51150 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
51181 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
51213 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
51245 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
51278 CCGAG
1 CCGAG
51283 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:51270 original size:65 final size:63
Alignment explanation
Indices: 51150--51282 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
51140 GCCTGGGTTG
* * * * *
51150 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
51213 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
51278 CCGAG
1 CCGAG
51283 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:51375 original size:31 final size:31
Alignment explanation
Indices: 51340--51442 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
51330 CCTGGGGTTG
51340 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** * *
51371 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCC-GATGG-TGA
51402 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
51433 CCGAGG-ACCC
1 CCGAGGCACCC
51443 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 8 0.15
31 42 0.78
32 4 0.07
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:51393 original size:62 final size:62
Alignment explanation
Indices: 51317--51449 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
51307 GTGCGGCACT
*
51317 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
51379 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
51441 CCCGCACCC
1 CCCGCACCC
51450 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:51553 original size:32 final size:32
Alignment explanation
Indices: 51495--51625 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
51485 GCCTGGGTTG
* *
51495 CCGAGCCACCC-TC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
51525 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
51557 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
51589 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
51621 CCGAG
1 CCGAG
51626 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
30 10 0.11
31 3 0.03
32 69 0.73
33 12 0.13
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:51749 original size:33 final size:32
Alignment explanation
Indices: 51672--51760 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
51662 CTCACCAATG
*
51672 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
51704 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
51737 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
51761 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Done.