Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007632.1 Hibiscus syriacus cultivar Beakdansim tig00023680_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 72234
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27


Found at i:31212 original size:14 final size:12

Alignment explanation


    Indices: 31186--31227  Score: 75
    Period size: 12  Copynumber: 3.4  Consensus size: 12

      31176 TTAATGCTTT

                         
      31186 TATTTATATTATA
          1 TATTT-TATTATA

                        
      31199 TATTTTATTATA
          1 TATTTTATTATA

                        
      31211 TATTTTATTATA
          1 TATTTTATTATA

                 
      31223 TATTT
          1 TATTT

      31228 AAAGATTGCC


Statistics
Matches: 29,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  12   24  0.83
  13    5  0.17

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (12 bp):   
TATTTTATTATA

Found at i:65070 original size:12 final size:12

Alignment explanation


    Indices: 65055--65085  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

      65045 TTATTTATAT

                        
      65055 TATATTTTATTA
          1 TATATTTTATTA

                        
      65067 TATATTTTATTA
          1 TATATTTTATTA

                   
      65079 TATATTT
          1 TATATTT

      65086 AAAGATTGCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (12 bp):   
TATATTTTATTA

Found at i:65072 original size:17 final size:16

Alignment explanation


    Indices: 65043--65077  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 16

      65033 GCTTTAATGC

                            
      65043 TTTTATTTATATTATA
          1 TTTTATTTATATTATA

                          *  
      65059 TTTTATTATATATTTTA
          1 TTTTATT-TATATTATA

              
      65076 TT
          1 TT

      65078 ATATATTTAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    7  0.41
  17   10  0.59

ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71


Consensus pattern (16 bp):   
TTTTATTTATATTATA
Done.