Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007633.1 Hibiscus syriacus cultivar Beakdansim tig00023687_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47280
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Found at i:86 original size:31 final size:31
Alignment explanation
Indices: 48--168 Score: 181
Period size: 32 Copynumber: 3.9 Consensus size: 31
38 GTGCGTGAGG
* *
48 CTCGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGTCACCATCGGCAAACCCAGACGGGT-GT
79 CTCGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGTCACCATCGGCAAACCCAGACGGGTGT
110 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTC-GTCACCATCGGCAAACCCAGACGGGTGT
* *
142 CTCGTCACCATCGGCAACCCCCGACGG
1 CTCGTCACCATCGGCAAACCCAGACGG
169 TGGCTCGGCA
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
31 41 0.49
32 43 0.51
ACGTcount: A:0.20, C:0.39, G:0.27, T:0.14
Consensus pattern (31 bp):
CTCGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:150 original size:63 final size:62
Alignment explanation
Indices: 46--176 Score: 185
Period size: 63 Copynumber: 2.1 Consensus size: 62
36 TGGTGCGTGA
*
46 GGCTC-GTCACCATCGGCAACCCAGGCGGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGTCACCATCGGCAAACCCAGAC-GGT
* * * *
108 GTCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGTCACCATCGGCAACCCCCGACGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGGTGGCCTCGTCACCATCGGCAAACCCAGACGGT
170 GGCTCGG
1 GGCTCGG
177 CAACCCCAGG
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
62 13 0.21
63 36 0.59
64 12 0.20
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (62 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGTCACCATCGGCAAACCCAGACGGT
Found at i:301 original size:62 final size:63
Alignment explanation
Indices: 223--356 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
213 GCCGAGAGTT
*
223 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
286 -GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
348 GGGTGCGGG
1 GGGTGCGGG
357 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 61 0.88
63 8 0.12
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:332 original size:94 final size:93
Alignment explanation
Indices: 110--333 Score: 215
Period size: 94 Copynumber: 2.4 Consensus size: 93
100 AGACGGGTGT
* *
110 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTC-GTCACCATCGGCAACCCCCGACGGTGGCT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
174 CGGCAACCCCAGGCCACGGGTGCGGGAG
66 CGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
202 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGAC-GG
*
264 TGCCTCGGCAACCCCAGGCCAC-GGTGCGGGGG
61 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
296 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
334 CAACCCCAGG
Statistics
Matches: 97, Mismatches: 25, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
91 1 0.01
92 7 0.07
93 12 0.12
94 46 0.47
95 30 0.31
96 1 0.01
ACGTcount: A:0.16, C:0.38, G:0.34, T:0.12
Consensus pattern (93 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
CGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:403 original size:94 final size:92
Alignment explanation
Indices: 286--671 Score: 319
Period size: 94 Copynumber: 4.1 Consensus size: 92
276 CCCAGGCCAC
*
286 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGTGGG-CTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGG
351 TGCGGGAGTGCCGCACAGAACCGAGCGTT
64 TGCGGGAGTGCCGCACAGAACCGAGCGTT
* * * * *
380 GGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGTGGCCTCGGTC-ACCATTGGCAAAGC
1 GGTGCGTG-GGCTCGGTCACCATCGGCAACCCCCGACGGT-GCCTCGG-CAACC-----CCAGGC
** * *
444 CAGACGGGTGTCTCG-GT-CAC-CATCGGCAAACCCAGACG--
58 C--ACGGGTG-CGGGAGTGC-CGCA-CAG--AACCGAG-CGTT
482 GGTGTC-T---CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGTG
1 GGTG-CGTGGGCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGG-G
* *
543 TGCGGGAGTGCCGCACAGAGCCGAGAGTT
64 TGCGGGAGTGCCGCACAGAACCGAGCGTT
* * **
572 GGGTGCG-GGGCCTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGTCCATTTG
1 -GGTGCGTGGG-CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCA-CGG
*
636 GTGC-GGAGTGCCGCACAGAACCGAGCGCTG
63 GTGCGGGAGTGCCGCACAGAACCGAGCG-TT
666 GGTGCG
1 GGTGCG
672 GCAGCCTCGC
Statistics
Matches: 232, Mismatches: 28, Indels: 65
0.71 0.09 0.20
Matches are distributed among these distances:
88 1 0.00
89 5 0.02
90 7 0.03
91 12 0.05
92 8 0.03
93 30 0.13
94 92 0.40
95 4 0.02
96 1 0.00
97 10 0.04
98 26 0.11
99 5 0.02
100 3 0.01
101 12 0.05
102 7 0.03
103 7 0.03
104 2 0.01
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.14
Consensus pattern (92 bp):
GGTGCGTGGGCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTG
CGGGAGTGCCGCACAGAACCGAGCGTT
Found at i:425 original size:156 final size:155
Alignment explanation
Indices: 145--427 Score: 428
Period size: 156 Copynumber: 1.8 Consensus size: 155
135 CGGGTGTCTC
* * *
145 GTCACCATCGGCAACCCCCGACGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCCGGAC
1 GTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCAC
* *
210 AGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAA
66 AGAACCGAGAGTTGGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCAGACGGGTGCCTCGGCAA
275 CCCCAGGCCACGGTGCGGGGGCCTCG
130 CCCCAGGCCACGGTGCGGGGGCCTCG
301 GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
1 GTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
* * *
366 CAGAACCGAGCGTT-GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGC-GGTGGCCTCGG
65 CAGAACCGAGAGTTGGGTGCG-G-GGCCTCGGTCACCATCGGCAACCCCAGACGGGT-GCCTCGG
428 TCACCATTGG
Statistics
Matches: 115, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
155 3 0.03
156 58 0.50
157 52 0.45
158 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (155 bp):
GTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCAC
AGAACCGAGAGTTGGGTGCGGGGCCTCGGTCACCATCGGCAACCCCAGACGGGTGCCTCGGCAAC
CCCAGGCCACGGTGCGGGGGCCTCG
Found at i:432 original size:32 final size:32
Alignment explanation
Indices: 391--524 Score: 155
Period size: 32 Copynumber: 4.2 Consensus size: 32
381 GTGCGTGAGG
* *
391 CTCGGTCACCATCGGCAATCCCAGGCGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGTGGC
* * *
423 CTCGGTCACCATTGGCAAAGCCAGACGG-GTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGTG-GC
*
455 CTCGGTCACCATCGGCAAACCCAGACGGGTGTC
1 CTCGGTCACCATCGGCAAACCCAGAC-GGTGGC
* *
488 TCTCGGTCACCATCGGCAACCCCCGACGGT-GC
1 -CTCGGTCACCATCGGCAAACCCAGACGGTGGC
520 CTCGG
1 CTCGG
525 CAACCCCAGG
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
31 6 0.07
32 50 0.58
33 5 0.06
34 25 0.29
ACGTcount: A:0.18, C:0.37, G:0.29, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGTGGC
Found at i:8877 original size:32 final size:32
Alignment explanation
Indices: 8838--8925 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 32
8828 GCGTGAGCCC
*
8838 CGGTCACCATC-GCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
8870 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
8902 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
8926 CATTGGTGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
32 34 0.74
33 12 0.26
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:9042 original size:31 final size:32
Alignment explanation
Indices: 8972--9103 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
8962 GTGCGTGAGG
* *
8972 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
9004 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9035 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
9067 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9099 CTCGG
1 CTCGG
9104 CAACCCCAGG
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
31 27 0.29
32 58 0.62
33 8 0.09
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:9071 original size:63 final size:64
Alignment explanation
Indices: 8970--9103 Score: 200
Period size: 63 Copynumber: 2.1 Consensus size: 64
8960 TGGTGCGTGA
*
8970 GGCTCGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGAC-GGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * *
9033 GTCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
9097 GGCTCGG
1 GGCTCGG
9104 CAACCCCAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
63 42 0.67
64 21 0.33
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (64 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:9226 original size:31 final size:31
Alignment explanation
Indices: 9191--9283 Score: 82
Period size: 31 Copynumber: 3.0 Consensus size: 31
9181 CCCCGACGGT
9191 GCCTCGGCAACCCCAGGCCACGGGTGCGGGG
1 GCCTCGGCAACCCCAGGCCACGGGTGCGGGG
* * **** *
9222 GCCTCGGTC-ACCATC-GGCAACCCCCGACGGGT
1 GCCTCGG-CAACC-CCAGGCCACGGGTG-CGGGG
9254 GCCTCGGCAACCCCAGGCCACGGGTGCGGG
1 GCCTCGGCAACCCCAGGCCACGGGTGCGGG
9284 AGTGCCGCAC
Statistics
Matches: 44, Mismatches: 13, Indels: 10
0.66 0.19 0.15
Matches are distributed among these distances:
31 22 0.50
32 22 0.50
ACGTcount: A:0.14, C:0.41, G:0.37, T:0.09
Consensus pattern (31 bp):
GCCTCGGCAACCCCAGGCCACGGGTGCGGGG
Found at i:9227 original size:62 final size:63
Alignment explanation
Indices: 9150--9283 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
9140 GCCGAGAGTT
*
9150 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
9212 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
9275 GGGTGCGGG
1 GGGTGCGGG
9284 AGTGCCGCAC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:9259 original size:94 final size:94
Alignment explanation
Indices: 9035--9260 Score: 235
Period size: 94 Copynumber: 2.4 Consensus size: 94
9025 CAGACGGTGT
* *
9035 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
9100 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
9129 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGAC-GG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGACGGG
*
9190 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
62 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
9223 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
9261 CAACCCCAGG
Statistics
Matches: 99, Mismatches: 25, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
93 1 0.01
94 55 0.56
95 42 0.42
96 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:9392 original size:32 final size:32
Alignment explanation
Indices: 9318--9451 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
9308 GTGCGTGAGG
* *
9318 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
9351 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
9383 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
9415 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
9447 CTCGG
1 CTCGG
9452 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:9491 original size:348 final size:347
Alignment explanation
Indices: 8911--9569 Score: 1176
Period size: 348 Copynumber: 1.9 Consensus size: 347
8901 TCGGTCACCA
**
8911 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
8976 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGT
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGT
*
9041 CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCA
131 CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
* * *
9106 ACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCAC
196 ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
*
9171 CATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
261 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
9235 TCGGCAACCCCCGACGGGTGCC
326 TCGGCAACCCCCGACGGGTGCC
*
9257 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
9322 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCG
9387 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
129 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
9452 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
194 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
9517 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
259 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
9570 AGTGCCGCAC
Statistics
Matches: 297, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
346 76 0.26
347 38 0.13
348 153 0.52
349 30 0.10
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (347 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGT
CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
TCGGCAACCCCCGACGGGTGCC
Found at i:9534 original size:95 final size:95
Alignment explanation
Indices: 9212--9600 Score: 369
Period size: 95 Copynumber: 4.1 Consensus size: 95
9202 CCCAGGCCAC
9212 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
9277 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
9306 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
9369 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
9404 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
9468 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
9498 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
9563 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
9593 GGGTGCGG
1 GGGTGCGG
9601 CAGCCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
93 4 0.02
94 39 0.17
95 117 0.52
96 27 0.12
97 33 0.15
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:17803 original size:32 final size:32
Alignment explanation
Indices: 17762--17848 Score: 97
Period size: 32 Copynumber: 2.8 Consensus size: 32
17752 GCGTGAGCCC
*
17762 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
17795 C-GTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
17826 CGGTCACCATC-GCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
17849 CATTGGTGAG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
31 12 0.27
32 31 0.70
33 1 0.02
ACGTcount: A:0.21, C:0.38, G:0.26, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:17962 original size:32 final size:32
Alignment explanation
Indices: 17895--18026 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
17885 GTGCGTGAGG
* *
17895 CTCGGTCACCATCGGC-AACCCAGGC-GGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
17926 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
17958 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
17990 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
18022 CTCGG
1 CTCGG
18027 CAACCCCAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 16 0.17
32 75 0.80
33 3 0.03
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:18119 original size:32 final size:32
Alignment explanation
Indices: 18078--18183 Score: 103
Period size: 32 Copynumber: 3.4 Consensus size: 32
18068 GAGTTGGGTG
18078 CGGGT-CCTCGGTCACCATCGGCAACCCCCGA
1 CGGGTGCCTCGGTCACCATCGGCAACCCCCGA
* * ****
18109 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG-
1 CGGGTGCCTCGGTC-ACCATC-GGCAACCCCCGA
*
18140 CGGGGGCCTCGGTCACCATCGGCAACCCCCGA
1 CGGGTGCCTCGGTCACCATCGGCAACCCCCGA
18172 CGGGTGCCTCGG
1 CGGGTGCCTCGG
18184 CAACCCCAGG
Statistics
Matches: 55, Mismatches: 14, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
31 27 0.49
32 28 0.51
ACGTcount: A:0.13, C:0.42, G:0.34, T:0.11
Consensus pattern (32 bp):
CGGGTGCCTCGGTCACCATCGGCAACCCCCGA
Found at i:18150 original size:31 final size:31
Alignment explanation
Indices: 18109--18206 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
18099 CAACCCCCGA
18109 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
18140 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
18171 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
18203 CGGG
1 CGGG
18207 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:18171 original size:63 final size:63
Alignment explanation
Indices: 18073--18206 Score: 252
Period size: 63 Copynumber: 2.1 Consensus size: 63
18063 GCCGAGAGTT
*
18073 GGGTGC-GGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
18135 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
18198 GGGTGCGGG
1 GGGTGCGGG
18207 AGTGCCGCAC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 6 0.09
63 64 0.91
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:18176 original size:94 final size:94
Alignment explanation
Indices: 17958--18183 Score: 251
Period size: 94 Copynumber: 2.4 Consensus size: 94
17948 AGACGGGTGT
* *
17958 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
18023 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
18052 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGGT-CCTCGGTCACCATCGGCAACCCCCGACGGGT
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGT
*
18114 GCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
63 GCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
18146 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
18184 CAACCCCAGG
Statistics
Matches: 100, Mismatches: 25, Indels: 13
0.72 0.18 0.09
Matches are distributed among these distances:
93 1 0.01
94 76 0.76
95 22 0.22
96 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:18338 original size:31 final size:32
Alignment explanation
Indices: 18241--18371 Score: 160
Period size: 32 Copynumber: 4.2 Consensus size: 32
18231 GTGCGTGAGG
* *
18241 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
18274 CTC-GTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
18305 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
18336 CTCGGTCACCATC-GCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
18367 CTCGG
1 CTCGG
18372 CAACCCCAGG
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
30 10 0.12
31 31 0.36
32 42 0.49
33 3 0.03
ACGTcount: A:0.18, C:0.37, G:0.29, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:18340 original size:157 final size:157
Alignment explanation
Indices: 17925--18340 Score: 516
Period size: 157 Copynumber: 2.6 Consensus size: 157
17915 CAGGCGGTGG
* * *
17925 CCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTC-GTCACCATAGGCAAAGCCAGACGGGTGT
* *
17990 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
65 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* *
18055 CGGACAGAGCCGAGAGTTGGGTGCGGGT
130 CGCACAGAACCGAGAGTTGGGTGCGGGT
* * * ** * * *** * *
18083 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTG-CGGGGGC
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGTC-ACCATAGGCAAAGCCAGACGGGTGT
18147 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
65 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
*
18212 CGCACAGAACCGAGCGTT-GGTGCGTGAG-
130 CGCACAGAACCGAGAGTTGGGTGCG-G-GT
* * * *
18240 GCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGTCACCATTGGCAAAGCCAGACGGGTGT
1 CCTCGGTCACCATCGGCAAACCCAGACGGGT-GCCTCGTCACCATAGGCAAAGCCAGACGGGTGT
* * *
18305 CTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCGG
65 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
18341 TCACCATCGC
Statistics
Matches: 215, Mismatches: 38, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
156 6 0.03
157 131 0.61
158 78 0.36
ACGTcount: A:0.18, C:0.35, G:0.34, T:0.13
Consensus pattern (157 bp):
CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGTCACCATAGGCAAAGCCAGACGGGTGTC
TCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGGTGCGGGT
Found at i:18460 original size:95 final size:95
Alignment explanation
Indices: 18135--18520 Score: 349
Period size: 95 Copynumber: 4.1 Consensus size: 95
18125 CCCAGGCCAC
18135 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
18200 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * * *** * *
18229 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGTC-ACCATTGGCAAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGGCAACCCCAGGCCAC
*** * * * * * *
18292 GCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
64 GGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
18326 CAG-AC-GGTGTCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
18388 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
18418 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
18483 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
18513 GGGTGCGG
1 GGGTGCGG
18521 CAGCCTCGCA
Statistics
Matches: 219, Mismatches: 57, Indels: 31
0.71 0.19 0.10
Matches are distributed among these distances:
91 4 0.02
92 6 0.03
93 15 0.07
94 84 0.38
95 100 0.46
96 5 0.02
97 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:26732 original size:32 final size:32
Alignment explanation
Indices: 26693--26780 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 32
26683 GCGTGAGCCC
*
26693 CGGTCACCATCGGCAATCCCAGGC-GGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
26725 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
26757 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
26781 CATTGGTGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
32 43 0.93
33 3 0.07
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:26868 original size:32 final size:32
Alignment explanation
Indices: 26827--26959 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
26817 GTGCGTGAGG
* *
26827 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
26859 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
26891 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
26923 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
26955 CTCGG
1 CTCGG
26960 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:27052 original size:32 final size:32
Alignment explanation
Indices: 27011--27116 Score: 103
Period size: 32 Copynumber: 3.4 Consensus size: 32
27001 GAGTTGGGTG
27011 CGGGT-CCTCGGTCACCATCGGCAACCCCCGA
1 CGGGTGCCTCGGTCACCATCGGCAACCCCCGA
* * ****
27042 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG-
1 CGGGTGCCTCGGTC-ACCATC-GGCAACCCCCGA
*
27073 CGGGGGCCTCGGTCACCATCGGCAACCCCCGA
1 CGGGTGCCTCGGTCACCATCGGCAACCCCCGA
27105 CGGGTGCCTCGG
1 CGGGTGCCTCGG
27117 CAACCCCAGG
Statistics
Matches: 55, Mismatches: 14, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
31 27 0.49
32 28 0.51
ACGTcount: A:0.13, C:0.42, G:0.34, T:0.11
Consensus pattern (32 bp):
CGGGTGCCTCGGTCACCATCGGCAACCCCCGA
Found at i:27104 original size:63 final size:63
Alignment explanation
Indices: 27006--27138 Score: 243
Period size: 63 Copynumber: 2.1 Consensus size: 63
26996 GCCGAGAGTT
*
27006 GGGTGC-GGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
27068 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
27131 -GGTGCGGG
1 GGGTGCGGG
27139 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 14 0.20
63 55 0.80
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:27109 original size:94 final size:94
Alignment explanation
Indices: 26891--27116 Score: 251
Period size: 94 Copynumber: 2.4 Consensus size: 94
26881 AGACGGGTGT
* *
26891 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
26956 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
26985 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGGT-CCTCGGTCACCATCGGCAACCCCCGACGGGT
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGT
*
27047 GCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
63 GCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
27079 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
27117 CAACCCCAGG
Statistics
Matches: 100, Mismatches: 25, Indels: 13
0.72 0.18 0.09
Matches are distributed among these distances:
93 1 0.01
94 76 0.76
95 22 0.22
96 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:27209 original size:157 final size:157
Alignment explanation
Indices: 26923--27210 Score: 447
Period size: 157 Copynumber: 1.8 Consensus size: 157
26913 AGACGGGTGT
* *
26923 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
26988 CGGACAGAGCCGAGAGTTGGGTGCGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCG
66 CGCACAGAACCGAGAGTTGGGTGCGGGTCCTCGGTCACCATCGGCAACCCCAGACGGGTGCCTCG
27053 GCAACCCCAGGCCACGGGTGCGGGGGC
131 GCAACCCCAGGCCACGGGTGCGGGGGC
27080 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC-GGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * * *
27144 CGCACAGAACCGAGCGTT-GGTGCGTGAG-GCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCC
66 CGCACAGAACCGAGAGTTGGGTGCG-G-GTCCTCGGTCACCATCGGCAACCCCAGACGGGT-GCC
27207 TCGG
128 TCGG
27211 TCACCATTGG
Statistics
Matches: 119, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
155 6 0.05
156 55 0.46
157 58 0.49
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (157 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGGTGCGGGTCCTCGGTCACCATCGGCAACCCCAGACGGGTGCCTCG
GCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:27247 original size:32 final size:32
Alignment explanation
Indices: 27173--27306 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
27163 GTGCGTGAGG
* *
27173 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
27206 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
27238 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
27270 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
27302 CTCGG
1 CTCGG
27307 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:27397 original size:347 final size:347
Alignment explanation
Indices: 26766--27423 Score: 1176
Period size: 347 Copynumber: 1.9 Consensus size: 347
26756 TCGGTCACCA
*
26766 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCATCGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
26831 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
*
26896 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGC
131 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
* * *
26961 AACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGTCCTCGGTCAC
196 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGCCTCGGTCAC
*
27026 CATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
261 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
27091 TCGGCAACCCCCGACGGGTGCC
326 TCGGCAACCCCCGACGGGTGCC
*
27113 TCGGCAACCCCAGGCCA-CGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCATCGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
27177 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
27242 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
27307 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
195 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGC-GGGGCCTCGGTC
* **
27372 ACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
259 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
27424 AGTGCCGCAC
Statistics
Matches: 297, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
346 59 0.20
347 209 0.70
348 29 0.10
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (347 bp):
TCGGCAACCCCAGGCCATCGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGCCTCGGTCAC
CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
TCGGCAACCCCCGACGGGTGCC
Found at i:27432 original size:94 final size:95
Alignment explanation
Indices: 27068--27454 Score: 335
Period size: 94 Copynumber: 4.1 Consensus size: 95
27058 CCCAGGCCAC
*
27068 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC-G
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
27132 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * *** *
27161 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATC-CCAGGCGGGTGGCCTCGGTC-ACCATTGGCA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAA-CACCCGACGGGT-GCCTCGG-CAACCCCAGGCC
* *** * * * * * *
27223 AAGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
62 ACGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * * *
27259 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
27323 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* **
27353 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
27417 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
27447 GGGTGCGG
1 GGGTGCGG
27455 CAGCCTCGCA
Statistics
Matches: 223, Mismatches: 53, Indels: 35
0.72 0.17 0.11
Matches are distributed among these distances:
93 36 0.16
94 82 0.37
95 41 0.18
96 27 0.12
97 32 0.14
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:35658 original size:33 final size:32
Alignment explanation
Indices: 35621--35709 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
35611 GCGTGAGCCC
*
35621 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
35654 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
35686 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
35710 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:35852 original size:31 final size:32
Alignment explanation
Indices: 35755--35886 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
35745 GGTGCGTGAG
* *
35755 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
35787 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
35819 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
35850 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
35882 CTCGG
1 CTCGG
35887 CAACCCCAGG
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
31 29 0.31
32 52 0.56
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:35867 original size:63 final size:64
Alignment explanation
Indices: 35754--35886 Score: 198
Period size: 63 Copynumber: 2.1 Consensus size: 64
35744 TGGTGCGTGA
*
35754 GCTCGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTG
1 GCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTG
* * * *
35818 TCTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGTG
1 GCTCGGTCACCATCGGC-AACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTG
35881 GCTCGG
1 GCTCGG
35887 CAACCCCAGG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
63 35 0.56
64 19 0.31
65 8 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (64 bp):
GCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTG
Found at i:35975 original size:158 final size:158
Alignment explanation
Indices: 35784--36202 Score: 521
Period size: 158 Copynumber: 2.7 Consensus size: 158
35774 CCAGGCGGGT
*
35784 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAAACCCAGAC-GGT
1 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAAA-CCAGACGGGT
*
35848 GTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGT
65 GTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGT
* * *
35913 TCCGGACAGAGCCGAGAGTTGGGTGCG-G-
130 GCCGCACAGAACCGAGAGTT-GGTGCGTGA
* * * * ** *
35941 GGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG-CAACC-CCAGGC-CACGGGTGCG
1 GG-CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTC-ACCATC-GGCAAACCAG-ACG
* *
36003 GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
62 GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
*
36068 AGTGCCGCACAGAACCGAGCGTTGGTGCGTGA
127 AGTGCCGCACAGAACCGAGAGTTGGTGCGTGA
* * *
36100 GG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGG
1 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT-GCCTCGGTCACCATCGGCAAA-CCAGACGGG
* * *
36164 TGTCTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCGG
64 TGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
36203 TCACCATCGG
Statistics
Matches: 221, Mismatches: 29, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
156 2 0.01
157 39 0.18
158 145 0.66
159 33 0.15
160 2 0.01
ACGTcount: A:0.17, C:0.35, G:0.34, T:0.13
Consensus pattern (158 bp):
GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAAACCAGACGGGTG
TCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTG
CCGCACAGAACCGAGAGTTGGTGCGTGA
Found at i:36011 original size:31 final size:31
Alignment explanation
Indices: 35970--36067 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
35960 CAACCCCCGA
35970 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
36001 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
36032 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
36064 CGGG
1 CGGG
36068 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:36032 original size:63 final size:63
Alignment explanation
Indices: 35933--36067 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
35923 GCCGAGAGTT
*
35933 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
35996 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
36059 GGGTGCGGG
1 GGGTGCGGG
36068 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:36043 original size:95 final size:94
Alignment explanation
Indices: 35819--36044 Score: 235
Period size: 95 Copynumber: 2.4 Consensus size: 94
35809 AGACGGGTGT
* *
35819 CTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
35883 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
35912 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGACGGG
*
35974 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
62 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
36007 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
36045 CAACCCCAGG
Statistics
Matches: 99, Mismatches: 25, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
92 1 0.01
93 6 0.06
94 7 0.07
95 77 0.78
96 7 0.07
97 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:36140 original size:190 final size:191
Alignment explanation
Indices: 35944--36310 Score: 512
Period size: 190 Copynumber: 1.9 Consensus size: 191
35934 GGTGCGGGGT
* * * ** *
35944 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG-CAACC-CCAGGC-CA-CGGGTGCGGG
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTC-ACCACC-GGCAAACCCAG-AC-GG
36005 GGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
62 GGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
*
36070 TGCCGCACAGAACCGAGCGTT-GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTG
127 TGCCGCACAGAACCGAGAGTTGGGTGCG-GAGGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
36133 G
191 G
* * * * * *
36134 CCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCGGTCACCATCGGCAAACCCAGACGGTGTC
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCACCGGCAAACCCAGACGGGGCC
36199 TCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
66 TCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* *
36264 GCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACCATCGGCAA
131 GCACAGAACCGAGAGTTGGGTGCGGAGGCCTCGGTCACCATCGGCAA
36311 CACCCGACGG
Statistics
Matches: 156, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
190 126 0.81
191 28 0.18
192 2 0.01
ACGTcount: A:0.17, C:0.36, G:0.34, T:0.13
Consensus pattern (191 bp):
CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCACCGGCAAACCCAGACGGGGCC
TCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGGTGCGGAGGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGG
Found at i:36200 original size:31 final size:32
Alignment explanation
Indices: 36102--36234 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
36092 GTGCGTGAGG
* *
36102 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
36135 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
36167 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
36198 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
36230 CTCGG
1 CTCGG
36235 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 29 0.33
32 34 0.38
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:36226 original size:63 final size:65
Alignment explanation
Indices: 36102--36234 Score: 180
Period size: 63 Copynumber: 2.1 Consensus size: 65
36092 GTGCGTGAGG
* * * * *
36102 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
* * *
36167 CTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
36230 CTCGG
1 CTCGG
36235 CAACCCCAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 33 0.55
64 3 0.05
65 24 0.40
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (65 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:36272 original size:348 final size:346
Alignment explanation
Indices: 35695--36352 Score: 1181
Period size: 348 Copynumber: 1.9 Consensus size: 346
35685 TCGGTCACCA
**
35695 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGCTCGG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGCTCGG
35760 TCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGT
66 TCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGT
*
35825 CACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAA
131 CACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAA
* * *
35890 CCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCACC
196 CCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACC
*
35955 ATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCAT
261 ATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCAT
36020 CGGCAACCCCCGACGGGTGCC
326 CGGCAACCCCCGACGGGTGCC
*
36041 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGA-GCTCG
* *
36106 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
65 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
36171 GTCACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
129 GTCACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
36236 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
194 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
* **
36301 CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
259 CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
36353 AGTGCCGCAC
Statistics
Matches: 297, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
346 56 0.19
347 19 0.06
348 222 0.75
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (346 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGCTCGG
TCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGT
CACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAA
CCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACC
ATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCAT
CGGCAACCCCCGACGGGTGCC
Found at i:36309 original size:95 final size:95
Alignment explanation
Indices: 35996--36383 Score: 360
Period size: 95 Copynumber: 4.1 Consensus size: 95
35986 CCCAGGCCAC
35996 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
36061 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
36090 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
36153 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
36188 CAG-AC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
36251 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
36281 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
36346 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
36376 GGGTGCGG
1 GGGTGCGG
36384 CAGCCTCGCA
Statistics
Matches: 223, Mismatches: 55, Indels: 31
0.72 0.18 0.10
Matches are distributed among these distances:
92 4 0.02
93 6 0.03
94 42 0.19
95 126 0.57
96 35 0.16
97 5 0.02
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:44569 original size:33 final size:31
Alignment explanation
Indices: 44532--44619 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
44522 GCGTGAGCCC
*
44532 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGC-GGT-GCCT
* ** *
44565 CGGTCACCATCGGCAAAACCATACGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGTGCCT
*
44596 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
44620 CATTGGTGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
31 23 0.50
32 3 0.07
33 20 0.43
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (31 bp):
CGGTCACCATCGGCAAACCCAGGCGGTGCCT
Found at i:44608 original size:64 final size:63
Alignment explanation
Indices: 44532--44779 Score: 177
Period size: 64 Copynumber: 3.8 Consensus size: 63
44522 GCGTGAGCCC
44532 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAAACCATACGGTGTCT
1 CGGTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAAACCATACGGTGTCT
*** ** * * *
44596 CGGTCACCATCGGCAACCCCAGGCCATTGG--T-GAGGGA--GTGCCGCACAGAACCGAGCGT-T
1 CGGTCACCATCGGCAA-CCCAGGCGGGTGGCCTCG-GTCACCAT-CGGCA-A-AACC-A---TAC
44655 GGTGCGTGAGGCT
57 GGT--GT----CT
* *
44668 CGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCT
1 CGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAAACCATAC-GGTGTCT
* *
44732 CGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 CGGTCACCATCGGC-AACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
44780 CCCCCGACGG
Statistics
Matches: 141, Mismatches: 21, Indels: 44
0.68 0.10 0.21
Matches are distributed among these distances:
60 1 0.01
61 5 0.04
62 4 0.03
63 4 0.03
64 62 0.44
65 12 0.09
66 3 0.02
67 1 0.01
68 4 0.03
70 3 0.02
71 11 0.08
72 21 0.15
73 4 0.03
74 5 0.04
75 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.15
Consensus pattern (63 bp):
CGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAAACCATACGGTGTCT
Found at i:44707 original size:32 final size:32
Alignment explanation
Indices: 44666--44797 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
44656 GTGCGTGAGG
* *
44666 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
44698 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
44730 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
44762 CTCGGTCACCATCGGCAACCCCCGAC-GGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
44793 CTCGG
1 CTCGG
44798 CAACCCCAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 9 0.10
32 73 0.78
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:44947 original size:62 final size:62
Alignment explanation
Indices: 44844--44975 Score: 232
Period size: 62 Copynumber: 2.1 Consensus size: 62
44834 GCCGAGAGTT
*
44844 GGGTGC-GGGTCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
44905 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
44967 GGGTGCGGG
1 GGGTGCGGG
44976 AGTGCCGCAC
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
61 6 0.09
62 50 0.74
63 12 0.18
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (62 bp):
GGGTGCGGGGGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:44951 original size:93 final size:92
Alignment explanation
Indices: 44730--44952 Score: 211
Period size: 93 Copynumber: 2.4 Consensus size: 92
44720 AGACGGGTGT
* *
44730 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGGCT
1 CTCGGTCACCATCGGCAAACCCAGAC-GGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
44795 CGGCAACCCCAGGCCACGGGTGCGGGAG
65 CGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
44823 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGG-GTCCTCGGTCACCATC-GCAACCCCCGACGGGT
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGTG-CCTCGGTCACCATCGGCAACCCCCGAC-GGT
*
44884 GCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
61 GCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
44916 CCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGTGCCTCGG
44953 CAACCCCAGG
Statistics
Matches: 96, Mismatches: 25, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
92 14 0.15
93 68 0.71
94 13 0.14
95 1 0.01
ACGTcount: A:0.16, C:0.38, G:0.34, T:0.13
Consensus pattern (92 bp):
CTCGGTCACCATCGGCAAACCCAGACGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTC
GGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:45000 original size:155 final size:157
Alignment explanation
Indices: 44762--45047 Score: 445
Period size: 155 Copynumber: 1.8 Consensus size: 157
44752 AGACGGGTGT
* *
44762 CTCGGTCACCATCGGCAACCCCCGACGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCC
1 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
44827 GGACAGAGCCGAGAGTTGGGTGCG-G-GTCCTCGGTCACCATC-GCAACCCCCGACGGGT-GCCT
66 GCACAGAACCGAGAGTT-GGTGCGTGAG-CCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCT
44888 CGGCAACCCCAGGCCACGGGTGCGGGGGC
129 CGGCAACCCCAGGCCACGGGTGCGGGGGC
44917 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
1 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * * *
44982 GCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCG
66 GCACAGAACCGAGAGTTGGTGCGTGAGCCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
45047 G
131 G
45048 TCACCATTGG
Statistics
Matches: 118, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
154 6 0.05
155 91 0.77
156 14 0.12
157 7 0.06
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (157 bp):
CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGTGCGTGAGCCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
GCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:45003 original size:93 final size:93
Alignment explanation
Indices: 44906--45288 Score: 341
Period size: 93 Copynumber: 4.1 Consensus size: 93
44896 CCAGGCCACG
44906 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
44970 TGCGGGAGTGCCGCACAGAACCGAGCGTT
66 TGC-GGAGTGCCGCACAGAACCGAGCGTT
* * * * *** * *
44999 GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAAA
1 GGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCAC
*** * * * * **
45062 GCCAGACGG-GTGTCTCGTCAC-CATCGGCAAAC-CC
63 GGGTG-CGGAGTG-C-CG-CACAGAAC--CGAGCGTT
* * * *
45096 AG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
* *
45160 TGCGG-GTGCCGCACAGAGCCGAGAGTT
66 TGCGGAGTGCCGCACAGAACCGAGCGTT
* * **
45187 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 -GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
45252 GTGCGGAGTGCCGCACAGAACCGAGCGCTG
65 GTGCGGAGTGCCGCACAGAACCGAGCG-TT
45282 GGTGCGG
1 GGTGCGG
45289 CAGCCTCGCA
Statistics
Matches: 221, Mismatches: 51, Indels: 35
0.72 0.17 0.11
Matches are distributed among these distances:
90 2 0.01
91 3 0.01
92 5 0.02
93 90 0.41
94 41 0.19
95 38 0.17
96 35 0.16
97 4 0.02
98 3 0.01
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (93 bp):
GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
TGCGGAGTGCCGCACAGAACCGAGCGTT
Found at i:45119 original size:32 final size:32
Alignment explanation
Indices: 45010--45142 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
45000 GTGCGTGAGG
* *
45010 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
45043 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
45075 CTC-GTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
45106 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
45138 CTCGG
1 CTCGG
45143 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 29 0.33
32 34 0.38
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:45136 original size:63 final size:64
Alignment explanation
Indices: 45014--45141 Score: 177
Period size: 63 Copynumber: 2.0 Consensus size: 64
45004 GTGAGGCTCG
* * * * *
45014 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTC
1 GTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTC
* * *
45078 GTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTC
1 GTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTC
45141 G
1 G
45142 GCAACCCCAG
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
63 32 0.57
64 24 0.43
ACGTcount: A:0.19, C:0.36, G:0.30, T:0.16
Consensus pattern (64 bp):
GTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTC
Done.