Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007638.1 Hibiscus syriacus cultivar Beakdansim tig00023964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52503
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Found at i:486 original size:33 final size:31
Alignment explanation
Indices: 449--534 Score: 111
Period size: 30 Copynumber: 2.7 Consensus size: 31
439 GCGTGAGCCC
*
449 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCA-GCGGGT-GCCT
* *
482 CGGTCACCATCGGCAAAACCA-CGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGCGGGTGCCT
*
512 CGGTCACCATCGGCAACCCCAGC
1 CGGTCACCATCGGCAAACCCAGC
535 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
30 22 0.47
31 6 0.13
33 19 0.40
ACGTcount: A:0.20, C:0.38, G:0.28, T:0.14
Consensus pattern (31 bp):
CGGTCACCATCGGCAAACCCAGCGGGTGCCT
Found at i:622 original size:32 final size:32
Alignment explanation
Indices: 581--712 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
571 GTGCGTGAGG
* *
581 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
613 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
645 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
677 CTCGGTCACCATC-GCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
708 CTCGG
1 CTCGG
713 CAACCCCAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 20 0.21
32 62 0.66
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:852 original size:59 final size:62
Alignment explanation
Indices: 759--888 Score: 214
Period size: 59 Copynumber: 2.1 Consensus size: 62
749 GCCGAGAGTT
*
759 GGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGAC-GGTGCCTC-GCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
819 -GGTGCGGGGGCCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
880 GGGTGCGGG
1 GGGTGCGGG
889 AGTGCCGCAC
Statistics
Matches: 65, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
59 25 0.38
60 17 0.26
61 15 0.23
62 8 0.12
ACGTcount: A:0.14, C:0.41, G:0.35, T:0.11
Consensus pattern (62 bp):
GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:956 original size:153 final size:152
Alignment explanation
Indices: 677--957 Score: 424
Period size: 153 Copynumber: 1.8 Consensus size: 152
667 AGACGGGTGT
* *
677 CTCGGTCACCATCGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCC
1 CTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
742 GGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGTGCCTCGCA
66 GCACAGAACCGAGAGTTGGGTGCGGGG-CCTCGTCACCATCGGCAACCCCAGACGGTGCCTCGCA
807 ACCCCAGGCCACGGTGCGGGGGC
130 ACCCCAGGCCACGGTGCGGGGGC
830 CTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
1 CTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
895 GCACAGAACCGAGCGTT-GGTGCGTGAGG-CTCGGTCACCATC-GCAATCCCAGGCGGTGGCCTC
66 GCACAGAACCGAGAGTTGGGTGCG-G-GGCCTC-GTCACCATCGGCAACCCCAGACGGT-GCCTC
957 G
127 G
958 GTCACCATTG
Statistics
Matches: 116, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
152 21 0.18
153 93 0.80
154 2 0.02
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (152 bp):
CTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGGTGCGGGGCCTCGTCACCATCGGCAACCCCAGACGGTGCCTCGCAA
CCCCAGGCCACGGTGCGGGGGC
Found at i:1018 original size:32 final size:32
Alignment explanation
Indices: 923--1044 Score: 151
Period size: 32 Copynumber: 3.9 Consensus size: 32
913 GTGCGTGAGG
* * *
923 CTCGGTCACCATC-GCAATCCCAGGC-GGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
* *
954 CTCGGTCACCATTGGCAAAGCCA-ACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
985 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* *
1017 CTCGGTCACCATCGGCAACCCCCGACGG
1 CTCGGTCACCATCGGCAAACCCAGACGG
1045 TGCCTCGCAA
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
31 35 0.44
32 44 0.56
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:1126 original size:93 final size:94
Alignment explanation
Indices: 819--1197 Score: 290
Period size: 93 Copynumber: 4.1 Consensus size: 94
809 CCCAGGCCAC
819 GGTGCGGGGGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GGTGCGGGGGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* * *
884 GCGGGAGTGCCGCACAGAACCGAGCG-TT
66 GCGGGAGTGCCGCACAGAGCCGAGAGCTG
* * * * * *
912 GGTGCGTGAGG-CTCGGTCACCATCGCAATCCCAGGC-GGTGGCCTCGGTC-ACCATTGGCAAAG
1 GGTGCG-GGGGCCTCGGTCACCATCGCAACCCCCGACGGGT-GCCTCGG-CAACC-----CCAGG
** * **
974 CCAACGGGTGTCTCG-GT-CAC-CATC-G-G-C-A-AACCC
58 CC-ACGGGTG-CGGGAGTGC-CGCA-CAGAGCCGAGAGCTG
* * * *
1007 AG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTC-GCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
1069 TGCGGGAGTGCCGCACAGAGCCGAGAGTTG
65 TGCGGGAGTGCCGCACAGAGCCGAGAGCTG
* * **
1099 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCA-TCCATTGG
1 GGTGCGGGGGCCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
1163 TGCGGGAGTGCCGCACA-A-CCGAGCGCTG
65 TGCGGGAGTGCCGCACAGAGCCGAGAGCTG
1191 GGTGCGG
1 GGTGCGG
1198 CAGCCTCGCA
Statistics
Matches: 221, Mismatches: 38, Indels: 55
0.70 0.12 0.18
Matches are distributed among these distances:
86 2 0.01
87 11 0.05
88 9 0.04
89 1 0.00
90 1 0.00
91 1 0.00
92 21 0.10
93 75 0.34
94 54 0.24
95 23 0.10
96 1 0.00
98 9 0.04
99 11 0.05
100 2 0.01
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (94 bp):
GGTGCGGGGGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
GCGGGAGTGCCGCACAGAGCCGAGAGCTG
Found at i:1178 original size:94 final size:91
Alignment explanation
Indices: 1017--1197 Score: 265
Period size: 94 Copynumber: 2.0 Consensus size: 91
1007 AGACGGGTGT
*
1017 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGCAACCCCAGGCCACGGGTGCGGGAGTGCCG
1 CTCGGTCACCATCGGCAACACCCGACGGTGCCTCGCAACCCCAGGCCACGGGTGCGGGAGTGCCG
*
1082 CACAGAGCCGAGAGTTGGGTGCGGGGGC
66 CACA-A-CCGAGAGCTGGGTGCGGGGGC
* **
1110 CTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCA-TCCATTGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACACCCGAC-GGTGCCTC-GCAACCCCAGGCCACGGGTGCGGGAGTGC
*
1174 CGCACAACCGAGCGCTGGGTGCGG
64 CGCACAACCGAGAGCTGGGTGCGG
1198 CAGCCTCGCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
92 15 0.19
93 26 0.32
94 30 0.38
95 9 0.11
ACGTcount: A:0.17, C:0.36, G:0.35, T:0.12
Consensus pattern (91 bp):
CTCGGTCACCATCGGCAACACCCGACGGTGCCTCGCAACCCCAGGCCACGGGTGCGGGAGTGCCG
CACAACCGAGAGCTGGGTGCGGGGGC
Found at i:9399 original size:33 final size:32
Alignment explanation
Indices: 9362--9450 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
9352 GCGTGAGCCC
*
9362 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
9395 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
9427 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
9451 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:9538 original size:32 final size:32
Alignment explanation
Indices: 9497--9629 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
9487 GTGCGTGAGG
* *
9497 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
9529 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9561 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
9593 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9625 CTCGG
1 CTCGG
9630 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:9754 original size:31 final size:31
Alignment explanation
Indices: 9713--9810 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
9703 CAACCCCCGA
9713 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
9744 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
9775 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
9807 CGGG
1 CGGG
9811 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:9775 original size:63 final size:63
Alignment explanation
Indices: 9676--9810 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
9666 GCCGAGAGTT
*
9676 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
9739 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
9802 GGGTGCGGG
1 GGGTGCGGG
9811 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:9786 original size:95 final size:94
Alignment explanation
Indices: 9561--9787 Score: 244
Period size: 95 Copynumber: 2.4 Consensus size: 94
9551 AGACGGGTGT
* *
9561 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
9626 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
9655 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGACGGG
*
9717 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
62 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
9750 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
9788 CAACCCCAGG
Statistics
Matches: 100, Mismatches: 25, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
93 1 0.01
94 7 0.07
95 84 0.84
96 7 0.07
97 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:9857 original size:94 final size:93
Alignment explanation
Indices: 9740--10123 Score: 344
Period size: 94 Copynumber: 4.1 Consensus size: 93
9730 CCAGGCCACG
*
9740 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGTGGG-CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
9805 TGCGGGAGTGCCGCACAGAACCGAGCGTT
65 TGCGGGAGTGCCGCACAGAACCGAGCGTT
* * * * *
9834 GGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAAAG
1 GGTGCGTG-GGCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACC-----CCAGG
** * *
9898 CCA-GACGGTGTCTCG-GT-CAC-CATCGGCAAACCCAGACG--
58 CCACG--GGTG-CGGGAGTGC-CGCA-CAG--AACCGAG-CGTT
9936 GGT--GT---CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GGTGCGTGGGCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* *
9996 GCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GCGGGAGTGCCGCACAGAACCGAGCGTT
* * * **
10024 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGG
1 GGTGCGTGGG-CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
10089 TGC-GGAGTGCCGCACAGAACCGAGCGCTG
65 TGCGGGAGTGCCGCACAGAACCGAGCG-TT
10118 GGTGCG
1 GGTGCG
10124 GCAGCCTCGC
Statistics
Matches: 231, Mismatches: 29, Indels: 60
0.72 0.09 0.19
Matches are distributed among these distances:
86 1 0.00
87 5 0.02
88 5 0.02
89 9 0.04
90 10 0.04
91 1 0.00
93 21 0.09
94 95 0.41
95 22 0.10
96 28 0.12
99 1 0.00
100 11 0.05
101 9 0.04
102 5 0.02
103 6 0.03
104 2 0.01
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (93 bp):
GGTGCGTGGGCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
GCGGGAGTGCCGCACAGAACCGAGCGTT
Found at i:9913 original size:158 final size:158
Alignment explanation
Indices: 9526--9945 Score: 535
Period size: 158 Copynumber: 2.7 Consensus size: 158
9516 CCAGGCGGGT
* * *
9526 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATAGGCAAAGCCAGACGGGT
*
9591 GTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGT
66 GTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGT
* * *
9656 TCCGGACAGAGCCGAGAGTTGGGTGCGG
131 GCCGCACAGAACCGAGAGTTGGGTGCGG
* * ** * * ***
9684 GGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG-CAACCCCAGGCCACGGGTG-CGG
1 GG-CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTC-ACCATAGGCAAAGCCAGACGG
* *
9747 GGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGA
64 GTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGA
*
9812 GTGCCGCACAGAACCGAGCGTT-GGTGCGTG
129 GTGCCGCACAGAACCGAGAGTTGGGTGCG-G
* * *
9842 AGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGAC-G
1 -GGCCTCGGTCACCATCGGCAAACCCAGACGGGT-GCCTCGGTCACCATAGGCAAAGCCAGACGG
* * *
9905 GTGTCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
64 GTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
9946 TCACCATCGG
Statistics
Matches: 220, Mismatches: 35, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
157 33 0.15
158 140 0.64
159 47 0.21
ACGTcount: A:0.17, C:0.35, G:0.34, T:0.13
Consensus pattern (158 bp):
GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATAGGCAAAGCCAGACGGGT
GTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGT
GCCGCACAGAACCGAGAGTTGGGTGCGG
Found at i:9945 original size:32 final size:32
Alignment explanation
Indices: 9845--9977 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
9835 GTGCGTGAGG
* *
9845 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
9878 CTCGGTCACCATTGGCAAAGCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
9909 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
9941 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
9973 CTCGG
1 CTCGG
9978 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 25 0.28
32 42 0.47
33 22 0.25
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:18346 original size:33 final size:32
Alignment explanation
Indices: 18309--18397 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
18299 GCGTGAGCCC
*
18309 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
18342 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
18374 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
18398 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:18485 original size:32 final size:32
Alignment explanation
Indices: 18444--18576 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
18434 GTGCGTGAGG
* *
18444 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
18476 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
18508 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
18540 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
18572 CTCGG
1 CTCGG
18577 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:18701 original size:31 final size:31
Alignment explanation
Indices: 18660--18757 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
18650 CAACCCCCGA
18660 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
18691 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
18722 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
18754 CGGG
1 CGGG
18758 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:18722 original size:63 final size:63
Alignment explanation
Indices: 18623--18757 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
18613 GCCGAGAGTT
*
18623 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
18686 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
18749 GGGTGCGGG
1 GGGTGCGGG
18758 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:18733 original size:95 final size:94
Alignment explanation
Indices: 18508--18734 Score: 244
Period size: 95 Copynumber: 2.4 Consensus size: 94
18498 AGACGGGTGT
* *
18508 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
18573 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
18602 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGACGGG
*
18664 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
62 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
18697 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
18735 CAACCCCAGG
Statistics
Matches: 100, Mismatches: 25, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
93 1 0.01
94 7 0.07
95 84 0.84
96 7 0.07
97 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:18734 original size:158 final size:158
Alignment explanation
Indices: 18540--18829 Score: 460
Period size: 158 Copynumber: 1.8 Consensus size: 158
18530 AGACGGGTGT
* *
18540 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
18605 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
66 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
18667 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
128 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
18698 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
18763 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
18828 GG
131 GG
18830 TCACCATTGG
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
157 33 0.27
158 86 0.71
159 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.37, T:0.12
Consensus pattern (158 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
GGCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:18866 original size:32 final size:32
Alignment explanation
Indices: 18792--18925 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
18782 GTGCGTGAGG
* *
18792 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
18825 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
18857 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
18889 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
18921 CTCGG
1 CTCGG
18926 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:19008 original size:95 final size:95
Alignment explanation
Indices: 18686--19074 Score: 369
Period size: 95 Copynumber: 4.1 Consensus size: 95
18676 CCCAGGCCAC
18686 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
18751 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
18780 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
18843 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
18878 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
18942 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
18972 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
19037 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
19067 GGGTGCGG
1 GGGTGCGG
19075 CAGCCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
93 4 0.02
94 39 0.17
95 117 0.52
96 27 0.12
97 33 0.15
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:19021 original size:349 final size:348
Alignment explanation
Indices: 18383--19043 Score: 1196
Period size: 349 Copynumber: 1.9 Consensus size: 348
18373 TCGGTCACCA
**
18383 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
18448 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
*
18513 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGC
131 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
* * *
18578 AACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCA
196 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
*
18643 CCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
261 CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
18708 ATCGGCAACCCCCGACGGGTGCC
326 ATCGGCAACCCCCGACGGGTGCC
*
18731 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
18796 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
18861 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
18926 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
195 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
18991 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
260 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
19044 AGTGCCGCAC
Statistics
Matches: 299, Mismatches: 13, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
348 76 0.25
349 223 0.75
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (348 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
ATCGGCAACCCCCGACGGGTGCC
Found at i:27298 original size:33 final size:32
Alignment explanation
Indices: 27261--27349 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
27251 GCGTGAGCCC
*
27261 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
27294 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
27326 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
27350 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:27437 original size:32 final size:32
Alignment explanation
Indices: 27396--27528 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
27386 GTGCGTGAGG
* *
27396 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
27428 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
27460 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
27492 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
27524 CTCGG
1 CTCGG
27529 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:27653 original size:31 final size:31
Alignment explanation
Indices: 27612--27709 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
27602 CAACCCCCGA
27612 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
27643 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
27674 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
27706 CGGG
1 CGGG
27710 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:27674 original size:63 final size:63
Alignment explanation
Indices: 27575--27709 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
27565 GCCGAGAGTT
*
27575 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
27638 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
27701 GGGTGCGGG
1 GGGTGCGGG
27710 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:27685 original size:95 final size:94
Alignment explanation
Indices: 27460--27686 Score: 244
Period size: 95 Copynumber: 2.4 Consensus size: 94
27450 AGACGGGTGT
* *
27460 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
27525 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
27554 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGACGGG
*
27616 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
62 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
27649 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
27687 CAACCCCAGG
Statistics
Matches: 100, Mismatches: 25, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
93 1 0.01
94 7 0.07
95 84 0.84
96 7 0.07
97 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:27686 original size:158 final size:158
Alignment explanation
Indices: 27492--27781 Score: 460
Period size: 158 Copynumber: 1.8 Consensus size: 158
27482 AGACGGGTGT
* *
27492 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
27557 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
66 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
27619 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
128 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
27650 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
27715 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
27780 GG
131 GG
27782 TCACCATTGG
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
157 33 0.27
158 86 0.71
159 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.37, T:0.12
Consensus pattern (158 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
GGCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:27818 original size:32 final size:32
Alignment explanation
Indices: 27744--27877 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
27734 GTGCGTGAGG
* *
27744 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
27777 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
27809 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
27841 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
27873 CTCGG
1 CTCGG
27878 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:27960 original size:95 final size:95
Alignment explanation
Indices: 27638--28026 Score: 369
Period size: 95 Copynumber: 4.1 Consensus size: 95
27628 CCCAGGCCAC
27638 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
27703 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
27732 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
27795 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
27830 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
27894 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
27924 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
27989 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
28019 GGGTGCGG
1 GGGTGCGG
28027 CAGCCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
93 4 0.02
94 39 0.17
95 117 0.52
96 27 0.12
97 33 0.15
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:27973 original size:349 final size:348
Alignment explanation
Indices: 27335--27995 Score: 1196
Period size: 349 Copynumber: 1.9 Consensus size: 348
27325 TCGGTCACCA
**
27335 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
27400 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
*
27465 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGC
131 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
* * *
27530 AACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCA
196 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
*
27595 CCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
261 CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
27660 ATCGGCAACCCCCGACGGGTGCC
326 ATCGGCAACCCCCGACGGGTGCC
*
27683 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
27748 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
27813 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
27878 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
195 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
27943 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
260 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
27996 AGTGCCGCAC
Statistics
Matches: 299, Mismatches: 13, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
348 76 0.25
349 223 0.75
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (348 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
ATCGGCAACCCCCGACGGGTGCC
Found at i:36243 original size:32 final size:32
Alignment explanation
Indices: 36204--36291 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 32
36194 GTGTGAGCCC
*
36204 CGGTCACCATCGGCAATCCCAGGC-GGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
36236 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
36268 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
36292 CATTGGTGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
32 43 0.93
33 3 0.07
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:36378 original size:32 final size:32
Alignment explanation
Indices: 36337--36468 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
36327 GTGCGTGAGG
* *
36337 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
36369 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
36401 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
36433 CTCGGTCACCATCGGCAACCCCCGAC-GGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
36464 CTCGG
1 CTCGG
36469 CAACCCCAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 9 0.10
32 73 0.78
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:36560 original size:32 final size:32
Alignment explanation
Indices: 36519--36623 Score: 103
Period size: 32 Copynumber: 3.4 Consensus size: 32
36509 GAGTTGGGTG
36519 CGGGT-CCTCGGTCACCATCGGCAACCCCCGA
1 CGGGTGCCTCGGTCACCATCGGCAACCCCCGA
* * ***
36550 CGGGTGCCTCGG-CAACC-CCAGGCCA-CGGTG-
1 CGGGTGCCTCGGTC-ACCATC-GGCAACCCCCGA
*
36580 CGGGGGCCTCGGTCACCATCGGCAACCCCCGA
1 CGGGTGCCTCGGTCACCATCGGCAACCCCCGA
36612 CGGGTGCCTCGG
1 CGGGTGCCTCGG
36624 CAACCCCAGG
Statistics
Matches: 55, Mismatches: 12, Indels: 13
0.69 0.15 0.16
Matches are distributed among these distances:
30 18 0.33
31 13 0.24
32 24 0.44
ACGTcount: A:0.13, C:0.42, G:0.33, T:0.11
Consensus pattern (32 bp):
CGGGTGCCTCGGTCACCATCGGCAACCCCCGA
Found at i:36611 original size:62 final size:63
Alignment explanation
Indices: 36514--36646 Score: 243
Period size: 62 Copynumber: 2.1 Consensus size: 63
36504 GCCGAGAGTT
*
36514 GGGTGC-GGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
36576 -GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
36638 GGGTGCGGG
1 GGGTGCGGG
36647 AGTGCCGCAC
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
61 5 0.07
62 55 0.81
63 8 0.12
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:36616 original size:93 final size:92
Alignment explanation
Indices: 36401--36623 Score: 236
Period size: 93 Copynumber: 2.4 Consensus size: 92
36391 AGACGGGTGT
* *
36401 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGGCT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
36466 CGGCAACCCCAGGCCACGGTGCGGGAG
66 CGGCAACCCCAGGCCACGGTGCGGGAG
* * * * * ***** *
36493 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGGT-CCTCGGTCACCATCGGCAACCCCCGACGGGT
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTGCCTCGGTCACCATCGGCAACCCCCGAC-GGT
*
36555 GCCTCGGCAACCCCAGGCCACGGTGCGGGGG
62 GCCTCGGCAACCCCAGGCCACGGTGCGGGAG
* *
36586 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
36624 CAACCCCAGG
Statistics
Matches: 98, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
91 1 0.01
92 32 0.33
93 52 0.53
94 12 0.12
95 1 0.01
ACGTcount: A:0.16, C:0.38, G:0.34, T:0.13
Consensus pattern (92 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
CGGCAACCCCAGGCCACGGTGCGGGAG
Found at i:36659 original size:156 final size:155
Alignment explanation
Indices: 36433--36718 Score: 434
Period size: 156 Copynumber: 1.8 Consensus size: 155
36423 AGACGGGTGT
* *
36433 CTCGGTCACCATCGGCAACCCCCGACGGTGGCTCGGCAACCCCAGGCCACGGTGCGGGAGTTCCG
1 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGTGCGGGAGTGCCG
* * *
36498 GACAGAGCCGAGAGTTGGGTGCG-G-GTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTC
66 CACAGAACCGAGAGTT-GGTGCGTGAG-CCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
36560 GGCAACCCCAGGCCACGGTGCGGGGGC
129 GGCAACCCCAGGCCACGGTGCGGGGGC
36587 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCAC-GGTGCGGGAGTGC
* * * *
36652 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
64 CGCACAGAACCGAGAGTTGGTGCGTGAGCCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
36717 GG
129 GG
36719 TCACCATTGG
Statistics
Matches: 118, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
154 26 0.22
155 29 0.25
156 55 0.47
157 8 0.07
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (155 bp):
CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGTGCGGGAGTGCCG
CACAGAACCGAGAGTTGGTGCGTGAGCCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCGG
CAACCCCAGGCCACGGTGCGGGGGC
Found at i:36750 original size:30 final size:30
Alignment explanation
Indices: 36681--36804 Score: 158
Period size: 30 Copynumber: 4.0 Consensus size: 30
36671 GTGCGTGAGG
* *
36681 CTCGGTCACCATCGGCAATCCCAGGCGGGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGT
* *
36711 GGCCTCGGTCACCATTGGCAAAGCCAGACGGGT
1 ---CTCGGTCACCATCGGCAAACCCAGACGGGT
36744 CTCGGTCACCATCGGCAAACCCAGACGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGG-GT
* *
36775 CTCGGTCACCATCGGCAACCCCCGACGGGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGT
36805 GCCTCGGCAA
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
30 28 0.34
31 28 0.34
33 26 0.32
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.15
Consensus pattern (30 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:36811 original size:63 final size:63
Alignment explanation
Indices: 36681--36804 Score: 171
Period size: 61 Copynumber: 2.0 Consensus size: 63
36671 GTGCGTGAGG
* * * *
36681 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * *
36744 CTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
36805 GCCTCGGCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
61 27 0.50
62 3 0.06
63 24 0.44
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.15
Consensus pattern (63 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:36938 original size:95 final size:95
Alignment explanation
Indices: 36576--36960 Score: 338
Period size: 95 Copynumber: 4.1 Consensus size: 95
36566 CCCAGGCCAC
*
36576 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
* *
36641 TGCGGGAGTGCCGCACAGAACCGAGCG-TT
66 TGCGGGAGTGCCGCACAGAACCGAGAGCTG
* * * *** *
36670 GGTGCGTGAGG-CTCGGTCACCATCGGCAATC-CCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGTGCG-GGGGCCTCGGTCACCATCGGCAA-CACCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** ** * * * * * **
36732 AGCCAGACGGGTCT-CGGTCAC-CATCGGCA-AACCC
62 CGGGTG-CGGGAGTGCCG-CACAGAACCG-AGAGCTG
* * * * *
36766 AG-AC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
* *
36829 TGCGGGAGTGCCGCACAGAGCCGAGAGTTG
66 TGCGGGAGTGCCGCACAGAACCGAGAGCTG
* **
36859 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
36924 TGCGGGAGTGCCGCACAGAACCGAGCGCTG
66 TGCGGGAGTGCCGCACAGAACCGAGAGCTG
36954 GGTGCGG
1 GGTGCGG
36961 CAGCCTCGCA
Statistics
Matches: 219, Mismatches: 56, Indels: 31
0.72 0.18 0.10
Matches are distributed among these distances:
92 10 0.05
93 26 0.12
94 59 0.27
95 113 0.52
96 11 0.05
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
TGCGGGAGTGCCGCACAGAACCGAGAGCTG
Found at i:45124 original size:33 final size:32
Alignment explanation
Indices: 45087--45175 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
45077 GCGTGAGCCC
*
45087 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
45120 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
45152 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
45176 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:45263 original size:32 final size:31
Alignment explanation
Indices: 45221--45350 Score: 169
Period size: 32 Copynumber: 4.2 Consensus size: 31
45211 GGTGCGTGAG
*
45221 GCTCGGTCACCATCGGC-AACCCAGGCGGGT
1 GCTCGGTCACCATCGGCAAACCCAGACGGGT
45251 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -G-CTCGGTCACCATCGGCAAACCCAGACGGGT
45284 GTCTCGGTCACCATCGGCAAACCCAGAC--GT
1 G-CTCGGTCACCATCGGCAAACCCAGACGGGT
* *
45314 -CTCGGTCACCATCGGCAACCCCCGACGGGT
1 GCTCGGTCACCATCGGCAAACCCAGACGGGT
45344 GGCTCGG
1 -GCTCGG
45351 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 4, Indels: 11
0.86 0.04 0.11
Matches are distributed among these distances:
28 24 0.27
30 4 0.04
31 1 0.01
32 48 0.54
33 12 0.13
ACGTcount: A:0.18, C:0.38, G:0.30, T:0.14
Consensus pattern (31 bp):
GCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:45331 original size:60 final size:61
Alignment explanation
Indices: 45220--45350 Score: 176
Period size: 60 Copynumber: 2.1 Consensus size: 61
45210 TGGTGCGTGA
*
45220 GGCTCGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GGCTCGGTCACCATCGGCAACCCAGAC-GGT-G-CTCGGTCACCATCGGCAAACCCAGACGGGT
* * *
45284 GTCTCGGTCACCATCGGCAAACCCAGAC-GT-CTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGTGCTCGGTCACCATCGGCAAACCCAGACGGGT
45344 GGCTCGG
1 GGCTCGG
45351 CAACCCCAGG
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
60 34 0.56
63 2 0.03
64 17 0.28
65 8 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (61 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGTGCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:45475 original size:58 final size:59
Alignment explanation
Indices: 45408--45520 Score: 219
Period size: 58 Copynumber: 1.9 Consensus size: 59
45398 GGTGCGGGGT
45408 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGCGGG
1 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGCGGG
45467 CCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
45521 TGCGGGAGTG
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 50 0.93
59 4 0.07
ACGTcount: A:0.16, C:0.45, G:0.30, T:0.09
Consensus pattern (59 bp):
CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGCGGG
Found at i:45509 original size:153 final size:153
Alignment explanation
Indices: 45318--45597 Score: 440
Period size: 153 Copynumber: 1.8 Consensus size: 153
45308 AGACGTCTCG
* * *
45318 GTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCCGGA
1 GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
* *
45383 CAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCG
66 CAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
45445 GCAACCCCAGGCCACGGGCGGGCCTC
128 GCAACCCCAGGCCACGGGCGGGCCTC
45471 GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
1 GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
* * *
45536 CAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCG
66 CAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
45598 TCACCATTGG
Statistics
Matches: 116, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
152 33 0.28
153 81 0.70
154 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (153 bp):
GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
CAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCGGCA
ACCCCAGGCCACGGGCGGGCCTC
Found at i:45639 original size:64 final size:63
Alignment explanation
Indices: 45561--45692 Score: 183
Period size: 63 Copynumber: 2.1 Consensus size: 63
45551 GTGCGTGAGG
* * * * *
45561 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GCCTCGTCACCATCGGCAAACCCAGACGGGTGC
* * *
45625 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGTCACCATCGGCAAACCCAGACGGGTGC
45688 CTCGG
1 CTCGG
45693 CAACCCCAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
63 32 0.53
64 28 0.47
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (63 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:45667 original size:31 final size:31
Alignment explanation
Indices: 45565--45691 Score: 164
Period size: 32 Copynumber: 4.0 Consensus size: 31
45555 GTGAGGCTCG
* *
45565 GTCACCATCGGCAATCCCAGGCGGGTGGCCTC
1 GTCACCATCGGCAAACCCAGACGGGT-GCCTC
* * *
45597 GTCACCATTGGCAAAGCCAGACGGGTGTCTC
1 GTCACCATCGGCAAACCCAGACGGGTGCCTC
*
45628 GGTCACCATCGGCAAACCCAGACGGGTGTCTC
1 -GTCACCATCGGCAAACCCAGACGGGTGCCTC
* *
45660 GTCACCATCGGCAACCCCCGACGGGTGCCTC
1 GTCACCATCGGCAAACCCAGACGGGTGCCTC
45691 G
1 G
45692 GCAACCCCAG
Statistics
Matches: 84, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 33 0.39
32 51 0.61
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.16
Consensus pattern (31 bp):
GTCACCATCGGCAAACCCAGACGGGTGCCTC
Found at i:45816 original size:93 final size:93
Alignment explanation
Indices: 45464--45827 Score: 326
Period size: 93 Copynumber: 3.9 Consensus size: 93
45454 GGCCACGGGC
*
45464 GGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
1 GGGCCTCGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
*
45529 TGCCGCACAGAACCGAGCGTTGGTGCGTG
66 TGCCGCACAGAACCGAGAGTTGGTGCG-G
* * * * *** * * ***
45558 AGG-CTCGGTCACCATCGGCAATC-CCAGGCGGGTGGCCTCGTC-ACCATTGGCAAAGCCAGACG
1 GGGCCTC-GTCACCATCGGCAA-CACCCGACGGGT-GCCTCGGCAACCCCAGGCCACGGGTG-CG
* * * * * **** *
45620 GGTGT-CTCGGTCAC-CATCGGCAAACCCAG-ACGG
62 GGAGTGC-C-G-CACAGAACCG-AGAGTTGGTGCGG
* * *
45653 GTGTCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
1 GGGCCTCGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
*
45718 TGCCGCACAGAGCCGAGAGTTGGTGCGG
66 TGCCGCACAGAACCGAGAGTTGGTGCGG
* **
45746 GGGCCTCGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGGAG
1 GGGCCTCGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
45811 TGCCGCACAGAACCGAG
66 TGCCGCACAGAACCGAG
45828 CGCTGGGTGC
Statistics
Matches: 203, Mismatches: 53, Indels: 29
0.71 0.19 0.10
Matches are distributed among these distances:
92 6 0.03
93 85 0.42
94 49 0.24
95 49 0.24
96 9 0.04
97 5 0.02
ACGTcount: A:0.18, C:0.35, G:0.34, T:0.13
Consensus pattern (93 bp):
GGGCCTCGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
TGCCGCACAGAACCGAGAGTTGGTGCGG
Done.