genome.fa.s7639.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007639.1 Hibiscus syriacus cultivar Beakdansim tig00024042_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55221

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--91	32	2.9	31	80	9	87	15	29	32	21	1.94
12--91	32	2.6	32	82	7	94	17	30	32	20	1.95
126--251	61	2.2	55	90	8	189	11	40	35	12	1.79
297--428	32	4.2	32	90	4	196	13	31	37	18	1.89
305--428	63	2.0	63	90	3	196	12	29	37	19	1.89
480--560	33	2.5	33	87	2	110	16	28	34	20	1.94
8671--9039	94	4.0	93	71	18	336	12	36	33	17	1.88
8813--8936	31	4.0	30	83	6	149	15	29	35	19	1.92
8993--9094	31	3.4	31	65	18	88	11	35	39	13	1.82
8971--9101	61	2.1	61	95	2	237	10	38	38	12	1.79
8732--9090	187	1.9	186	83	8	471	12	35	35	17	1.87
8899--9182	153	1.8	156	86	8	420	12	37	34	15	1.85
9146--9278	32	4.2	32	91	2	196	14	30	36	18	1.90
9324--9412	33	2.8	32	82	1	115	14	28	37	20	1.92
17642--17769	31	4.2	31	78	10	129	16	29	35	17	1.92
17804--17844	20	2.0	20	85	9	55	9	36	39	14	1.79
17801--17926	58	2.2	57	88	9	184	11	39	36	12	1.79
17972--18103	32	4.2	32	90	4	196	13	31	37	18	1.89
17980--18103	63	2.0	63	90	3	196	12	29	37	19	1.89
18163--18229	32	2.1	32	85	0	89	16	31	32	19	1.94
26362--26747	94	4.1	94	72	8	361	12	36	33	17	1.87
26516--26640	30	4.0	30	84	7	151	15	31	34	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26510--26641	32	4.2	32	84	5	169	15	31	35	18	1.91
26510--26641	62	2.1	63	85	4	176	15	31	35	18	1.91
26434--26797	189	1.9	188	85	7	506	12	34	35	17	1.87
26676--26808	61	2.1	63	95	2	243	10	37	38	13	1.79
26604--26890	156	1.8	157	88	5	449	12	36	35	15	1.85
26860--26986	32	4.0	32	90	3	193	14	29	37	18	1.90
26860--27117	64	4.0	64	70	18	190	15	32	33	18	1.92
27031--27117	33	2.7	31	79	8	104	14	28	35	20	1.93
39829--40009	94	2.0	91	86	5	256	11	37	34	16	1.85
39992--40106	32	3.6	32	89	2	176	16	29	33	20	1.94
40304--40433	31	4.2	31	89	4	190	14	31	35	18	1.91
40304--40433	32	4.2	32	89	6	187	14	31	35	18	1.91
48637--49023	94	4.1	95	72	8	358	12	36	33	17	1.87
48785--48917	32	4.2	32	88	2	187	15	30	35	18	1.92
48785--48917	65	2.1	63	87	2	185	15	30	35	18	1.92
48952--49085	63	2.1	62	97	1	250	10	37	38	13	1.79
48952--49049	31	3.1	31	66	13	92	9	37	39	13	1.76
48709--49074	190	1.9	190	85	6	510	12	34	35	17	1.87
48975--49078	31	3.3	32	68	15	92	11	34	40	13	1.81
49131--49261	32	4.2	31	92	4	201	14	31	35	18	1.91
48816--49232	156	2.7	158	80	9	512	13	34	34	17	1.89
49311--49395	32	2.7	32	85	3	109	15	25	37	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48682--49322	345	1.9	342	95	1	1117	12	35	34	17	1.88

Tables:   1

The End!