Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007645.1 Hibiscus syriacus cultivar Beakdansim tig00024433_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 67700
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28


Found at i:11731 original size:31 final size:31

Alignment explanation


    Indices: 11696--11757  Score: 115
    Period size: 31  Copynumber: 2.0  Consensus size: 31

      11686 CTCCTGTTAT

                    *                      
      11696 TTACTCGGGCTGAGCAGCACTTACTGAATCA
          1 TTACTCGGACTGAGCAGCACTTACTGAATCA

                                           
      11727 TTACTCGGACTGAGCAGCACTTACTGAATCA
          1 TTACTCGGACTGAGCAGCACTTACTGAATCA

      11758 GAGCAGTTGC


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26


Consensus pattern (31 bp):   
TTACTCGGACTGAGCAGCACTTACTGAATCA

Found at i:40830 original size:31 final size:31

Alignment explanation


    Indices: 40795--40856  Score: 115
    Period size: 31  Copynumber: 2.0  Consensus size: 31

      40785 CTCCTGTTAT

                    *                      
      40795 TTACTCGGGCTGAGCAGCACTTACTGAATCA
          1 TTACTCGGACTGAGCAGCACTTACTGAATCA

                                           
      40826 TTACTCGGACTGAGCAGCACTTACTGAATCA
          1 TTACTCGGACTGAGCAGCACTTACTGAATCA

      40857 GAGCAGTTGC


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26


Consensus pattern (31 bp):   
TTACTCGGACTGAGCAGCACTTACTGAATCA
Done.