Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000765.1 Hibiscus syriacus cultivar Beakdansim tig00001487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86265

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2211--2240
15
2.0
15
100
0
60
40
0
13
46
1.43
6346--6379
16
2.1
16
100
0
68
41
17
5
35
1.74
8803--8979
84
2.1
85
92
1
293
28
20
19
31
1.97
22834--22918
32
2.7
32
84
0
125
16
27
25
30
1.97
35353--36085
138
5.3
138
86
4
842
23
21
23
32
1.98
37055--37106
21
2.5
21
81
12
70
25
23
34
17
1.96
37098--37184
42
2.1
42
82
2
104
25
16
31
27
1.96
37725--37769
22
2.0
22
83
12
56
51
6
2
40
1.41
38913--38988
30
2.5
30
82
4
82
56
0
0
43
0.99
47304--47353
15
3.2
16
68
21
52
44
4
6
46
1.47
48546--48665
35
3.5
35
95
3
208
36
15
11
36
1.83
53451--53495
3
15.7
3
81
9
58
40
0
0
60
0.97
54629--54930
49
6.1
47
68
16
175
29
8
13
48
1.72
54698--54996
99
3.0
99
67
16
301
31
8
13
46
1.72
54797--54930
50
2.7
49
90
2
205
29
8
12
49
1.70
54986--55163
53
3.2
57
92
6
292
31
5
9
53
1.55
55225--55283
2
29.5
2
100
0
118
50
0
0
49
1.00
55379--55425
24
2.0
24
100
0
94
38
4
6
51
1.47
67167--67237
14
5.2
14
80
15
78
76
0
12
11
1.03
67156--67249
28
3.3
28
80
11
86
74
1
15
8
1.11
67187--67230
20
2.2
20
92
8
72
77
0
13
9
0.99
67158--67238
34
2.3
35
81
10
87
75
1
13
9
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67180--67244
20
3.2
20
78
12
69
76
0
13
9
1.00
67184--67246
15
4.4
15
71
15
53
77
0
14
7
0.97
67179--67246
14
4.9
13
73
18
57
77
0
13
8
0.98
68468--68749
104
2.7
103
81
4
316
40
16
18
24
1.90
68895--68952
3
19.7
3
96
3
109
34
0
0
65
0.93
70091--70191
48
2.1
47
85
10
136
27
9
14
47
1.76
70250--70383
51
2.8
48
87
6
182
31
7
12
48
1.69
70486--70513
2
14.0
2
100
0
56
50
0
0
50
1.00
70439--70557
58
2.0
59
93
3
204
33
4
10
52
1.54
70112--70623
195
2.6
193
84
11
692
31
7
13
47
1.71
79390--79495
30
3.5
30
91
7
162
61
0
0
37
1.03
79473--79505
2
17.5
2
87
12
52
51
0
0
48
1.00
80126--80173
21
2.3
21
100
0
96
37
14
18
29
1.91

Tables:   1

The End!