genome.fa.s7657.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007657.1 Hibiscus syriacus cultivar Beakdansim tig00025306_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98940

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5893--5937	21	2.1	21	100	0	90	0	0	17	82	0.68
5892--5937	5	9.0	5	95	4	83	0	0	19	80	0.71
6286--6368	31	2.6	30	77	9	76	38	7	1	53	1.37
6460--6570	27	4.2	26	79	15	97	52	0	1	45	1.17
6477--6561	25	3.3	26	82	9	88	52	1	2	43	1.21
11080--11137	23	2.8	21	84	12	75	18	25	34	20	1.96
16904--17067	65	2.5	65	84	5	199	29	17	21	31	1.96
19189--19215	2	13.5	2	100	0	54	51	0	0	48	1.00
22159--22198	20	2.2	17	86	13	53	40	0	0	60	0.97
22174--22214	14	2.9	14	81	0	55	41	0	0	58	0.98
22293--22335	23	1.9	23	85	4	61	39	2	2	55	1.25
22440--22468	11	2.7	11	94	5	51	37	0	0	62	0.96
22516--22562	22	2.1	23	88	4	69	53	0	2	44	1.12
22524--22567	22	2.0	22	82	8	54	54	0	2	43	1.12
23106--23144	14	2.8	14	84	0	51	35	28	12	23	1.91
24163--25049	443	2.0	443	99	0	1765	25	25	21	27	1.99
28445--28484	14	3.1	13	82	10	55	60	0	0	40	0.97
29947--30072	3	42.3	3	91	1	200	63	0	3	32	1.13
30396--30816	113	3.8	113	93	2	706	28	18	14	38	1.90
30396--30816	222	1.9	222	91	2	698	28	18	14	38	1.90
31485--31873	165	2.3	169	90	3	608	35	22	13	28	1.92
31485--31874	82	4.7	82	89	3	575	35	22	13	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40317--40349	15	2.3	15	89	5	50	48	3	0	48	1.17
41864--41898	17	2.1	17	94	0	61	45	20	11	22	1.82
42798--42837	14	3.1	13	82	10	55	60	0	0	40	0.97
44822--44856	17	2.0	18	94	5	63	54	0	0	45	0.99
44823--44874	17	3.0	17	85	2	59	48	0	0	51	1.00
45812--45877	19	3.5	19	67	8	53	0	27	10	62	1.28
46850--46884	17	2.0	18	94	5	63	54	0	0	45	0.99
46851--46902	17	3.0	17	85	2	59	48	0	0	51	1.00
47841--47906	19	3.5	19	67	8	53	0	27	10	62	1.28
48356--48458	3	34.3	3	92	0	161	62	0	4	33	1.17
53549--53586	18	2.1	18	95	0	67	23	5	34	36	1.78
53822--53867	21	2.2	21	84	0	56	54	6	0	39	1.26
60325--60459	59	2.3	61	82	7	154	37	7	21	34	1.81
62164--62221	27	2.1	27	84	6	73	34	12	5	48	1.63
62173--62224	27	1.9	27	96	0	95	30	11	3	53	1.54
70006--70113	37	3.2	37	70	26	130	34	3	12	50	1.57
70006--70125	63	1.9	63	100	0	240	34	5	12	48	1.63
71802--71839	3	13.0	3	88	5	60	34	2	0	63	1.09
73164--73193	15	1.9	16	93	6	53	33	3	0	63	1.11
74301--74329	2	14.5	2	100	0	58	51	48	0	0	1.00
74954--74992	14	2.6	14	88	8	51	35	12	0	51	1.40
74967--74997	14	2.1	15	94	5	55	38	6	0	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79905--79958	20	2.5	22	82	5	67	25	25	14	33	1.95
81667--81706	19	2.1	19	100	0	80	45	7	5	42	1.54
81671--81715	19	2.4	19	92	0	72	53	4	6	35	1.47
91685--91714	14	2.1	14	100	0	60	33	6	13	46	1.69
91804--91846	22	1.9	23	90	4	70	48	2	0	48	1.14
92236--92290	22	2.3	23	84	9	67	49	0	1	49	1.11

Tables:   1

The End!