Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007658.1 Hibiscus syriacus cultivar Beakdansim tig00025425_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13062
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Found at i:4845 original size:296 final size:303
Alignment explanation
Indices: 1--13062 Score: 21879
Period size: 294 Copynumber: 44.3 Consensus size: 303
1 CAACACGAGGACTTCCCA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC-TAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
64 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
129 TAATTTATTAAAGGCGTTCGTTTTCTTCC-GCCCGCACT-AA-GGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
191 ACGCCCCGAACCTTTCTCCCCCAAGTACCCCACTCCA-GCAGGCGGAATACGTACGTGTGCGTGT
196 ACGCCCCGAACCTTTCT-CCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
255 GTTCGAGATAGAAT-AAAA-AAAATAATCCGAAAAAGA-GGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
296 CAACACGA-GACTTCCCA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
359 CGGAGTTTCTGAT-GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCC
66 CGGAG-TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCC
423 TTAATTTATT-AAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGC-AAATTCGGA-TC
130 TTAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTC
485 TACG-CCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATAC-TACGTGTGCGTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
548 GTTCGAGATAGAATAAAAAGAAAATAATCCG-AAAA-AGGGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
590 CAACACGA-GACTTCCCAGGA-GTCACCCATCCTAGTA-TACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
*
652 CGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCGCACCCGTCATGCCTTG-GCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
716 TAATTTATT-AAGGCGTTCGTTTTCTTCC-GCCCGCACT-AA-GGAGTCGC-AAATTCGTATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
*
776 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAAGCGGGAATACGTACGTGTGCGTGT
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGC-GGAATACGTACGTGTGCGTGT
*
841 GTTCGAGATAG---AAAAAG-AAATAATCCG-AAAATAGGGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
*
880 C-ACAC-AGGACTTCCCA--TGGT--CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
939 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
1004 TAATTTATTAAAGGCGTTCGTTTTCTTCCCGGCCCGCACTAAA-GGAGTCGCAAAATTCGGATTC
131 TAATTTATTAAAGGCGTTCGTTTTCTT-CCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTC
*
1068 TACTCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
1133 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
1177 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCC-AGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1241 CGGAGTTCTGAT-GGATCC--TGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
1303 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAA-GGAGTCGC-AAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
1366 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGC-GAATACGTACGTGTGTGCGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTAC--GTGTGCGTG
1430 TGTTCGAGATAGAATAAAAAG-AAATAATCCGAAAAAGAGGGGTG
259 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
1474 CAACACGAGGACTTCCCA-G-GGTCACCCATCCTAGTACTACTCTCGCCC-AGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1536 C-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
1600 TAATTTATT-AAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTC-GATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
1663 ACGCCCCGAACCTTTCTCCCCAAGTACCCCCACTCCAGGCAGGCGGAATACGTACGTGTGC--GT
196 ACGCCCCGAACCTTTCTCCCCAAGTA-CCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
1726 GTTCGAGATAGAAT-AAAA-AAAAT-ATCCGAAAAAGA-GGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
1766 CAACAC-AGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1830 CGGAGTTCTGAT-GGATCCGGTGCATTAGTGCTGGTAT-ATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
1893 TAATTTATT-AAGGCGTTCG--TT-TTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
1954 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCA-GCA-GCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
2017 TTCGAGATAGAATAAAAAG-AAATAATCCGAAAAAGAGGGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
2059 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
2124 CGGAGTTCTGATGGGATCCGGTGCA-T--TGCTGGTATGA-CGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
2185 TAATTTATT-AAGGCGTTCG-TTTCTTCC-GCCCGCACTAAAGGGAGTC-CAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
2246 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
2311 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
2353 CAACACGA-GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
2417 C-GAGTTCTGAT-GGATCCGGTGCATTAGTGCTGGTATGA-CGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
2479 TAATTTATTAAAGGCGTTCGTTTTCTTCC-GCCCGCACT-AAGGGAGTCGC-AAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
2541 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCCAGGCAGGCGGAATACGTACGTGTGCGTGT
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACT-CCAGGCAGGCGGAATACGTACGTGTGCGTGT
2606 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-A-GGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
2648 CAACACGA-GACTTCCCA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
2711 CGGAGTTCTGAT-GGATCC-GTGCATTA-TGCTGGTATGATCGCACCC-TCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
* *
2772 TAATTTATT-AAGGCGTTTGTTTTCTCTTCCGGCCC-CACT-TAGGGAGTCGC-AAATTCGGATT
131 TAATTTATTAAAGGCGTTCG-TTT-TCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATT
2833 CTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGC-GAATACGTACGTGTGCGTG
194 CTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTG
2897 TGTTCGAGATAGAATAAAAAGAAAATAATCC-AAAAAGAGGGGTG
259 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
2941 CAACACGAGGACTTCCCA-GAGGTCACCC-TCCTAGTACTACTCTCCCCTCGCCCAAGCACGCTT
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA--CT---CTCGCCCAAGCACGCTT
3004 AACTGCGGAGTTCTGAT-GGATCCCGGTGCATTAGTGCTGGTATGATCGCACCC-TCATGCCTTG
61 AACTGCGGAGTTCTGATGGGAT-CCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTG
3067 CGCCCTTAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCG
125 CGCCCTTAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCG
3132 GATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCCCCACTCCA-GCAGGCGGAATACGTACGT
190 GATTCTACGCCCCGAACCTTTCTCCCCAAGTA---CCCCACTCCAGGCAGGCGGAATACGTACGT
3196 GTGCGTGTGTTCGAGATAGAAT-AAAAGAAAATAATCCGAAAAAGA-GGGTG
252 GTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
3246 CAACACGAGGACTTCCCAGGAGGTCACCCATCC---TACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
3308 CGGAGTTCTGAT-GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
3372 TAATTTATTAAA-GCGTTCG-TTTCTTCCGGCCCGCACT-AAGGGAGT--CAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
3432 AC-CCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
3496 TTCGAGATAGAAT--AAAG-AAATAATCCGAAAAAGA-GGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
3535 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTA-TACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
3599 CGGAGTTCTGAT-GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCG-CCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
3662 T-ATTTATTAAAGGCGTTCGTTTTCTTCTTCCGGCCCGCACT-AA-GGAGTCGCAAAATTCGGAT
131 TAATTTATTAAAGGCGTTCG--TT-TTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGAT
3724 TCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACT-CAGGCAGGCGGAATACGTACGT-TGCGT
193 TCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGT
* *
3787 GTGTTCGAG-TAGAATAAAAAGAAAATAATCCGAAAAAAAGGGATG
258 GTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
3832 CAACACGAGGACTTCCCA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
3896 CGGAGTTC---TGGGATCCGGTGCATTAGTGCTGGTATG-TCGCACCCGTCATGCCTT--GCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
* *
3955 TAATTTATT-AAGGCGTTCGTTTTCTTCC-GCCCACACT-AAGGGA-TCGC-AAATTCAGATTCC
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATT-C
*
4015 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCATGCGGAATACGTACGTGT--GTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
* *
4078 GTTCGATATAGAA-AAAAAAAAAATAATCCG-AAAA-AGGGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
4119 CAACACGA-GACTCTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAACGCTTAA
1 CAACACGAGGA--CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC-ACGCTT-A
*
4183 ACTGC-GAGTTCTGATGGGATCCGGTGCATTAGTG-TTGTATGATCGCACCCGTCATGCCTTGCG
62 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCG
4246 CCCTTAATTTATTAAAGGCGTTTCGTTTTC-TCCGGCCCGCACT-AA-GG-GTCGCAAAAATTCG
127 CCCTTAATTTATTAAAGGCG-TTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGC-AAAATTCG
4307 GATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTG
190 GATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTG
4372 CGTGTGTTCGAGATAGAAT-AAAA-AAAATAATCCG-AAAAGAGGGGTG
255 CGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
4418 C-ACACGAGGACTTCCCAGGA-GTCACCC-TCCTAGTAC-ACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
4479 C-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAT-CCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
* *
4542 TAATTTATTAAAGGCGTTCGTTTTCTTCCGTCCCGACACTAAAGGGAGTCGCAAAATTC-TATTC
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCG-CACTAAAGGGAGTCGCAAAATTCGGATTC
4606 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCA-GCAGGCGGAATACGTAC-TGTGCGTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
4669 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
4713 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC-CTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
4777 CGGAGTTCTGAT-GGATCCGGTGCATTAGT-CTGGTAT-ATCGCACCC-TCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
4838 TAATTTATTAAAGGC-TTCGTTTTCTTCCTGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
* *
4902 ACGCCCCGAACCTTTCTCCCCAAGTA-CCCACTCCA-GCATGCGGAATACGTACGTGTGTGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
*
4965 TTTC--TATAGAAT-AAAAGAAAA-AATCCGAAAAAGA----TG
261 -TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
5001 CAACACGA-GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
5065 CGGAGTTCTGATGGGATCC-GTGCATTA--GCTGGTATGATCGCACCCGT--TGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
5125 TAATTTATTAAAGGCGTTTCGTTTTCTTCCTGCCCGCACTAAA-GGAGTCGCAAAATTCGGATTC
131 TAATTTATTAAAGGCG-TTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGA-T-
5189 TACTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCA-GCGGAATACGTACGTGT--G
193 T-CTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCG
5251 TGTGTTCGAGATAGAATAAAAAG--AA-AATCCG-AAAAGAGGGGTG
257 TGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
5294 C-A-ACGAGGACTTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
1 CAACACGAGGAC-TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
5357 GCGGAGTTCTGAT-GGATCCGGTGCATTA-TGCTGGTATGATCGCACCCGTCATGCCTTGCGCCC
65 GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCC
5420 TTAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGA---GCAAAATTCGGATTC
130 TTAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTC
5482 TACGCCCCG-ACCTTTCTCCCCAAGTA-CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
*
5545 GTTCGAGATAGAAT-AAAA-AAAATAATCCGAAAAAGA-GGATG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
5586 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
5651 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
5716 TAATTTATTAAAGGCGTTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCCCAAAATTCGGATTC
131 TAATTTATTAAAGGCG-TTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTC
5781 TACGCCCCGAACCTTTCT-CCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
*
5845 GTTCGAGATAGAAT-AAAAGAAAATAATCCGAAAAATA-GGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
5887 CAACAC---GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
** * *
5949 CTAAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCGCACCCGTTATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
6014 TAATTTATTAAAGGCGTTCGTTTTCTTCCTGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
6079 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCA-GCGGAATACGTA-GTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
6142 TTCGAGATAGAATAAAAAG-AAATAATCCG-AAAA-AGGGGTGG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGT-G
6183 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA--CTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
6246 CGGAGTTCTGATGGGATCC-GTGCA-TAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
6309 TAATTTATT-AAGGCGTTTGTTTTCTTCCGGCCCCGCACTTAAAGGGAGTCGCAAAATTCGGATT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGG-CCCGCAC-TAAAGGGAGTCGCAAAATTCGGATT
6373 CTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTG
194 CTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTG
*
6438 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGATG
259 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
*
6483 CAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
6548 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
6613 TAATTTATTAAAGGCGTTCGTTTTCTTCCCGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
6678 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
6743 TTCG-GATAGAATAAAAAGAAAATAATCCG-AAAA-AGGGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
6783 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
6848 CGGAGTTCTGATGGGATCC-GTGCATTAGTGCTGGTA--ATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
6910 TAATTTATT-AAGGCGTTCGTTTTCTTCC-GCCC-CACTAAA-GG-GTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
6970 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATAC-TACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
7034 TTCGAGATAGAAT-AAAAGAAAATAATCCG-AAAA-A-GGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
7073 CAACACGA-GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
7137 CGGA-TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC-TCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
7200 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACT-AAGGGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
7264 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGC-GAATAC-TACGTGTGC-TGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
7326 TTCGAGATAGAAT-AAAAGAAAATAATCCGAAAAAGA-GGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
7367 CAACACGA-GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACT
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACT
*
7431 GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGC-CCCGTCCTGCCTTGCGCCC
65 GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCC
7495 TTAATTTATTAAA-GCGTTCGTTTTTTCTCTTCCGGCCCGCACT-AAGGGAGTC-CAAAATTCGG
130 TTAATTTATTAAAGGCGTTCG---TTT-TCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGG
7557 ATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCA-GCGGAATACGTACGTGT--
191 ATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGC
*
7619 GTGCGTTCGAGATATAGAATAAAAAGAAAATAATCCG-AAAAGAGGGGTG
256 GTGTGTTCGAG--ATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
7668 CAACACGA-GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
*
7732 C-GAGTTC-GATGGGATCC-GTGCATTAGTGCTGGTATGATCGCACCCGTTATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
* *
7794 TAATTTATT-AAGGCGTTTGTTTTCTTCTTCCGCCCGCACTAAAGGGAGTCGCAAAATTCGGATT
131 TAATTTATTAAAGGCGTTCGTTTTCTTC--CGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATT
7858 CTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCA-GCAGGCGGAATACGTACGTGTGCGTG
194 CTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTG
7922 TGTTCGAGATAGAAT-AAAAGAAAATAATCCGAAAAAGAGGGGTG
259 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
7966 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC-CCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
8030 C-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
8094 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTC-CAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
8158 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
8223 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGA-GGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
8265 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
8330 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
8395 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCACAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
8460 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
*
8525 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTT
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
8568 CAACACGAGGACTTCCCA-GA-GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
8631 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
**
8696 TAATTTATTAAAGGCGTTCG-TTT-TTCCCCCCCGCACT-AAGGGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
8758 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC-GGCAGGCGGAATACGTAC--GT--GTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
8818 TTCGAGATAGAAT-AAAAGAAAATAATCCGAAAAA-A-GGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
8858 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
8923 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
8988 TAATTTATTTAAGGCGTT-GTTTTCTTCCGGCCCGCACTTAAA-GGAGTCGCAAAATTCGGATTC
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCAC-TAAAGGGAGTCGCAAAATTCGGATTC
9051 TACGCCCCGAACCTTTCTCCCCAA-TACCCCACTCCAGGCAGGC-GAATACGTACGTGTGCGTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
9114 GTTCGAGATAGAAT-AAAAGAAAATAATCCGAAAAA-AGGGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
* *
9156 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACGACTCTCGCCCAAGCACGCTTAACTA
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
9221 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
9286 TAATTTATT-AA-GCGTTCGTTTTCTT-CGGCCCGCACTAAA-GGAGTCGC-AAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
9346 ACGCCCCGAACCTTTCTCCCC-AGTA-CCC-CTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
9408 TTCGAGATAG-AT-AAAAGAAAATAATCCG-AAAAGAGGGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
9448 CAACACGA-GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
9512 C-GAGTTCTGAT-GGATCC-GTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
9574 T-ATTTATTTAAGGCGTT-GTTTTCTTCCGGCCCGCACT-AAGGGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
9636 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
9701 TTCGAGATAGAATAAAAAG-AAATAATCCGAAAAAGAGGGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
9743 CAACACGAGGACTT-CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
9807 CGGAGTTCTGA-GGGATCCGGTGCATTAGTGCTGGTATGATCG-A-CCGTCATGCC-T--GCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
* *
9866 TAA-TTATT-AAGGCGTTTGTTTTCTTCCGG-CC-CACTAAGGGGA-TCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
*
9926 ACGCCCCGAACCTTTTTCCCCAAGTACCCCA-T-CAGGCAGGCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
9989 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGAGGGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCG-AAAAAGAGGGGTG
10033 CAACACGAGGACTTCCCAGGAGGTCACCCA---TAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
10095 CGGAGTTCTGATGGGATCCGG-G-ATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCG-CCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
10157 TAATTTATTTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAAGGGAGTCGCAAAATTCGGATTC
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCAC-TAAAGGGAGTCGCAAAATTCGGATTC
10222 TACG-CCCGAACCTTTCTCCCC-AGTACCCCACTCCAGGCAAGGCGGAATACGTACGTGTGCGTG
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGC-AGGCGGAATACGTACGTGTGCGTG
* *
10285 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAAAGGG-G
259 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
*
10329 CAACACGAGGACTTCCCAAGAGGTCA-CCATCCTAGTACTA--CTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
10391 CGGAGTTCTGATGGGATCCGGTGCATTAGTGC-GGTATGATCGCA-CCGTCATGCCTTGCGCCC-
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
10453 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
10518 ACGCCCCGAACCTTT-TCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTAC--GTGC--GTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
10578 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
10621 CAACACGAGGACTTCCCAGGAGGTCA-CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
10685 CGGAGTTC-GATGGGATCCGGTGCATTAGTG-TGGTATGATCGCACCCGTCA-GCCTT--GCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
10745 TAATTTATT-AAGGCGTTCGTTTTCTTCCGGCCC-CTA-TTAAGGGAGTCGCAAAATTCGGATTC
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGC-ACTAAAGGGAGTCGCAAAATTCGGATTC
10807 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTTG
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCG-TG
10872 TGTTCGAGATAGAAT-AAAAGAAAATAAT-CGAAAAAGAGGGGTG
259 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
10915 CAACACGAGGACTT-CCAGGAGGTCACCCATCCTAGTACTACTCTCG-CCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
10978 CGGAGTTCTGATGGGATCC-GTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
* *
11042 TAATTTATTTAAGGCGTTCGTTTTCTT-CGGCCCGCACTTAAGGGAGTCGCAAAAATTC--ATTC
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGC-AAAATTCGGATTC
11104 TACGCCCCGAACCTTTCT-CCCAAGTACCCCACTCCAGGC--GCGG-A-A--TACGTGT--GTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
*
11160 GTTCGAGATAGAAT-AAAAGAAAATAATCCGAAAAATA-GGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
11202 CAACACGAGGACTTCCCAGGAGGTCACCCAT-C-AGTACTACTCTCGCCCAAGCACG-TTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
11264 CGGAG---TGATGGGATCCGGTGCATTAGTGC-GGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
11325 TAATTTATTAAAGGCGTTCGTTTTTCTTCCGGCCCGCACT-AAGGGAGTCGCAAAATTCGGATTC
131 TAATTTATTAAAGGCGTTCG-TTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTC
11389 TACGCCCCGAACC-TT-TCCCCAAGTA-CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
11451 GTTCGAGATAGAATAAAAAGAAAAT-ATCCGAAAAAAAGAGGGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCG--AAAAAGAGGGGTG
11496 CAACACGAGGACTTCCCAGGAGGTC-CCCATCCTAGTACTACTC-CGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
11559 CGGAGTTCTGATGGGATCC-GTGCATTAGTGCTGG---GATCGCA-CCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
11619 TAATTTATT-AAGGCGTT-GTTTTCTTCCGG-CCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
11681 A--CCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
* *
11744 TTCGATATAGAATAAAAAGAAAATAATCCGAAAAATAGGGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
11787 CAACACGAGGACTTCCCAGGAGGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
1 CAACACGAGGACTTCCCAGGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
11852 GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG-CTT--GCCC
65 GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCC
11914 TTAATTTATTAAAGGCGTTCG-TTTCTTCCGG-CCGCACT-AAGGGAGTCGCAAAATTCGGATTC
130 TTAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTC
*
11976 TACGCCACGAACC-TTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACG-GTGCGTGT
195 TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGT
12039 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGAGGGTG
260 GTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAG-GGGTG
12083 CAACACGAGGACTTCCCAGGAGGTCACCCA---TAGTACTACTCT--CCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
12143 CGGAG-TCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
12206 TAATTTATTAAAGGCGTTCGTTTTTCTTCCGG-CCGCACT-AAGGGAGTCGCAAAAATTCGGA-T
131 TAATTTATTAAAGGCGTTCG-TTTTCTTCCGGCCCGCACTAAAGGGAGTCGC-AAAATTCGGATT
12268 -TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTG
194 CTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTG
12332 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGA-GGGTG
259 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
12376 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
12441 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
*
12506 TAATTTATT-AAGGCGTT-G-TTTCTTCCGGCCCGCACTTAA-GGAGTCGCAAAATTCGGATTCT
131 TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
12567 ACGCCCCGAACCTTTCTCCCCAAGTA-CCCACTCCAGGCA-GCGGAATACGTACGTGTGCGTGTG
196 ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
12630 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGA-GGGTG
261 TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
*
12672 CAA-ACGAGGACTTCCCAGGAGGTCACCCATCCTA-TACTACTATCGCCCAAGCACGCTTAACTG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
*
12735 CGGAGTTCTGATGGGATCCGGTGCATTAGTG-TGGTATGATCGCACACG-CATGCCTTGCGCCCT
66 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
12798 TAATTTA-T-AAGGCGTTCGTTTT-TCTCCGG-CCGCACTAAAGGGAGTCGCAAAATTCGGATTC
131 TAATTTATTAAAGGCGTTCGTTTTCT-TCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTC
12859 TACGCCCCGAAACCTTTCTCCCCAAGTA-CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTG
195 TACGCCCCG-AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTG
12923 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-A-GGGTG
259 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
12966 CAA-ACGAGGACTTCCCA-GAGGTCACCCATCCTAGTACTA--CTCGCCCAAGCACGCTTAA-TG
1 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
13026 CGGAGTTCTGATGGGATCCGGTTGCATTAG-GCTGGTA
66 CGGAGTTCTGATGGGATCCGG-TGCATTAGTGCTGGTA
Statistics
Matches: 12229, Mismatches: 108, Indels: 863
0.93 0.01 0.07
Matches are distributed among these distances:
283 82 0.01
284 40 0.00
285 32 0.00
286 40 0.00
287 252 0.02
288 349 0.03
289 510 0.04
290 449 0.04
291 774 0.06
292 1009 0.08
293 1252 0.10
294 1427 0.12
295 998 0.08
296 1037 0.08
297 909 0.07
298 1097 0.09
299 563 0.05
300 371 0.03
301 433 0.04
302 232 0.02
303 186 0.02
304 60 0.00
305 63 0.01
306 61 0.00
307 3 0.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (303 bp):
CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCT
TAATTTATTAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCT
ACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTG
TTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTG
Done.