Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007659.1 Hibiscus syriacus cultivar Beakdansim tig00025513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47187
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
File 1 of 3
Found at i:232 original size:19 final size:19
Alignment explanation
Indices: 195--234 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
185 TACAAAAATA
*
195 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
214 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
233 CT
1 CT
235 GAATCAGTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:396 original size:19 final size:18
Alignment explanation
Indices: 360--398 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
350 AACAAAAATA
*
360 CTTAAAGGTTACACCTAT
1 CTTAAAGGTTAAACCTAT
*
378 CTTAAAGAGTTAAAGCTAT
1 CTTAAAG-GTTAAACCTAT
397 CT
1 CT
399 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGGTTAAACCTAT
Found at i:445 original size:84 final size:87
Alignment explanation
Indices: 92--12071 Score: 5348
Period size: 85 Copynumber: 142.9 Consensus size: 87
82 TTGCTTAGCA
*
92 AATT-TTCTAACAAAAATACTTAAAGAGTTAC-CCTATCTTAAAGAGTTAAAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
155 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
177 AATTATTCT-ACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
240 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
262 AATTATTCTAACAAAAATACTTAAAGAGTTACA-CTATCTTAAAG-G-TAAAGCTATCTTAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
324 A-T--TTTTGCTTA-GCAAGCC
66 AGTCATTTTGCTTAGGCATGCC
342 AA-TATTCTAACAAAAATACTTAAAG-GTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
405 AGTCATTTTGCTTA-GCATGCC
66 AGTCATTTTGCTTAGGCATGCC
* *
426 AATTTTTCTAAC-AAAATACTTAAAGAGTTACACCTATCTT-AAGAGTT-AAGCTA-ATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
487 AATCA-TTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
508 -A--A-T-TAACAAAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTT-AAGCTAT-TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
565 A--CATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
585 AATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
649 AAGTCATTTTGCTTAGGCATGCC
66 -AGTCATTTTGCTTAGGCATGCC
672 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
737 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
759 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
824 AGTCA-TTTGCTTAGGCA----
66 AGTCATTTTGCTTAGGCATGCC
841 AATTATTCT-A-AAAAATAC-TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
903 AGTCATTTTGCTTAGGCATG-C
66 AGTCATTTTGCTTAGGCATGCC
924 AATTATTCTAACAAAAATACTT-AAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
988 -GTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
1009 AATTATTCTAACAAAAATACTTAAAGAGTT--ACCTATCTT-AAGAGTTAAAGCTATCTGAAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1070 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
1092 -ATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1156 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
1178 AATTATTCT-A-AAAAATACTTAAAGAGTTACA-CAATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1240 AGTCA-TTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
1261 AATTATTCTAACAAAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1325 --TCATTTTGCTTAGGCA-GCC
66 AGTCATTTTGCTTAGGCATGCC
1344 AATTATTCTAAC-AAAATAC-TAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTA-CTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1405 A--CATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
1425 AATT-TTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAA-AGTTAAAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
1488 ATTCA-TTT-CTTAGGCATG-C
66 AGTCATTTTGCTTAGGCATGCC
1507 ---TA-TCTAA-AAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1564 AGTCATTTTGCTTAGG-ATG-C
66 AGTCATTTTGCTTAGGCATGCC
1584 AATTATTCTAAC-AAAA-ACTTAAAGAGTT--ACCTATCTT-AA-AGTTAAAGCTATCTGAAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1642 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
1664 AA-T-TTCTAAC-AAAATACTT-AA-AGTTACACCTATCTTAAAGAGTTAAAGCTATCT-AATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1723 ---CA-TTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
1741 AATTATTCTAA-AAAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
1804 AGTCA-TTTGCTTAGGCA-GCA
66 AGTCATTTTGCTTAGGCATGCC
1824 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGA-TTAAAGCTAT-TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1887 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
1909 AATTATTCTAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
* ****
1973 A-TCA-TTT--TTA--AAAAAA
66 AGTCATTTTGCTTAGGCATGCC
*** * *** * * * * * **
1989 AATTAAAGTTACACCTAT-CTTAAA-AGTTAAAGCTATATGAATCCATCA-TT-TTGCT-T-TGG
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA---A-GAGTTAAAGCTATCT-G
* * * *
2048 CATGCA---ATTATT-C-TA-ACA---A
61 AATCCAGTCATT-TTGCTTAGGCATGCC
* * * ** * * * ** *
2067 AAATACT-TAA-AGAGTTAAAGCTATCTGAATCCAG-T-CA-TTTTGCTT-AGGCA-TGCCAA-T
1 AATTATTCTAACA-A---AAA--TA-CTTAA-AGAGTTACACCTAT-CTTAAAG-AGT-TAAAGC
* * ** ** ***
2124 TATTCT-AA-CAAAAAT-ACTTAAAG-TTACACCTATTAA
55 TA-TCTGAATC--CAGTCA-TT-TTGCTTA-GGC-ATGCC
** ** * * ** **
2160 AGAGTTAAAGCTATCTGAATCCAACCATTTTGTTAGGCA-TGCCAATTAT-TCTAACA-A---AA
1 A-A-TT--A--T-TCT-AA--CAAAAATACT-TAAAG-AGTTACACCTATCT-TAA-AGAGTTAA
** *** ** * *
2219 A--TA-CT-AA-AGAGT--TAAAGCTATCTGAATTCC
52 AGCTATCTGAATCCAGTCATTTTGCT-TAGGCATGCC
* * * * * *
2249 AGTCATT-TTGCTTAGGCATGCAATTATTCTAACA-A---A-A-ATA-CTTAAAGAGTT--ACCT
1 A---ATTATT-C-TA-ACA--AAAATACT-TAA-AGAGTTACACCTATCTTAAAGAGTTAAAGCT
* * *** ** *
2304 ATCTTAA--GAGT--TAAAGCTATCTGAAT-CC
56 ATCTGAATCCAGTCATTTTGCT-TAGGCATGCC
** * * *
2332 ATCATT-TTGCTTGGCATGCCAATTATTCTAACA-A---A-A--TA-CTTAAAGAGTTACAA--T
1 A--ATTATT-C-TAACA---AAAATACT-TAA-AGAGTTACACCTATCTTAAAGAGTTA-AAGCT
* ** *** ** *
2386 A-CTTAA-AGAGT--TAAAGCTATCTGAAT-CC
56 ATCTGAATCCAGTCATTTTGCT-TAGGCATGCC
* * * * * * *
2414 ATCATT-TTCTTAGGCAGCCAATTATTCTAAA-A---A-A-ATA-CTTAAAGAGTTACACCTATC
1 A--ATTATTC-TA-ACA--AAAATACT-TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATC
* ** *** ** *
2471 TTAA-AGAGT--TAAAGCTATCTGAAT-CC
59 TGAATCCAGTCATTTTGCT-TAGGCATGCC
* * * * * * *** * * * *
2497 AATCATTTTTAC-AAATTA--TAAACACCTATA-AAAGA-GTTAAAG-CTATAAAGCCATGT-AT
1 AATTATTCTAACAAAAATACTTAAAGA-GT-TACACCTATCTTAAAGAGT-TAAAGCTATCTGA-
* * * * *** * *
2555 TTGCTTAGGCAGATTATT-CTAACAAAAATACTT
62 AT-C-CAGTC--ATT-TTGCT--TAGGCATGC-C
** * *** * * * ** *** ** *
2588 AAAGAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAA
* *** * *
2649 TGCCA---ATTATT-CTAACAAAATACTT
63 T-CCAGTCATT-TTGCTTA-GGCATGC-C
* * *** * * * ** * ** *
2674 AA-AAGT-T-ACACCTATA-TTAAAGAGTTAAAGCTATCTGAATCA-TT--TGCT-TAGGCATGC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT-C
* *
2731 CA---ATTATT-C-TA-ACA---A
65 CAGTCATT-TTGCTTAGGCATGCC
* * * * * ** * * * *
2746 AAATACTT-AAAGAGTTAAAGCTATCTGAATCCAG-T-CA-TTTTGCTTAGGCATGCAATTATTC
1 AATTA-TTCTAACA---AAA-ATA-CTTAA-AGAGTTACACCTAT-CTTA---AAG-AGTTA---
* * ** * * * * * *
2807 TAA-CAAAATACTTAA-AGAGTTACTAT-CTTAAAGAGTTAAAGCT
51 -AAGC--TAT-CTGAATCCAGTCATTTTGCTT--AG-G--CATGCC
* * * * *** * * * *** * *
2850 AACTGAATCCATC-ATTTTGCTTAGGCATGCCAATTTTCTAACAAAAATACTTAAAGAGTTACAC
1 AA-TTATTCTAACAAAAATACTTA---AAG---A--GT-T-ACACCTAT-CTTAAAGAGTTAAAG
* * *** * *
2914 CTATCTTAA--GAGT--TAAAGCTATATGAAT-CC
54 CTATCTGAATCCAGTCATTTTGCT-TAGGCATGCC
* ** * * * * *
2944 AGTCATT-TTGCTTAGGCATGCATTATTCTAACA-A---A-A-ATA-CTTAAAGAGTTACACCTA
1 A---ATTATT-C-TA-ACA-AAAATACT-TAA-AGAGTTACACCTATCTTAAAGAGTTAAAGCT-
** * ** * * * * *
3001 ATAAGAGTTAAAG-C-TATCTGAATCAGTCATTTGCTT
56 ATCTGA-ATCCAGTCAT-TTTG-CTTAGGCA--TGC-C
* * *
3037 AGGCATGCCATTAT-TCTAAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCT
1 A---AT--TATTCTAAC-AAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCT
3100 GAATCCAGTCATTTTGCTTAGGCATGCC
60 GAATCCAGTCATTTTGCTTAGGCATGCC
*
3128 AATTATTCTAACAAAAATACTTAAAGAGTT--A-CTATCTTAAAGAGTTAAAGC-ATCTAAAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
* *
3188 A-CCATTTTGCTTAGGCAT-AC
66 AGTCATTTTGCTTAGGCATGCC
* *
3208 AATTATTCTAACAAAAAAACTT-AAGAGTTACACCTATCTT-AAGAGTTAAAGCTATATGAAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
3270 A-TCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
3291 AATTATTCT-A-AAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
3353 AGTCA-TTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
3374 AATT-TTCTAAC-AAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
3436 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
3458 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
3522 A-TCATTTTGCTTAGGCA-G-C
66 AGTCATTTTGCTTAGGCATGCC
3541 AATTATTCTAACAAAAATA---AAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
3600 AGTCATTTTGCTTA-GCATGCC
66 AGTCATTTTGCTTAGGCATGCC
3621 AATTATTCTAAC-AAAA-A-TT-AAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
3681 A---A-TTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
3699 -A--A-TCTAACAAAAATACTTAAAGAGTT--ACCTATCTTAAAGAGTTAAAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
3758 AGTCATTTTGCTTAGGAATG-C
66 AGTCATTTTGCTTAGGCATGCC
3779 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
3844 AG-CA-TTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
3864 AATTATTCTAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
3928 A--CATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
3948 AATTATTCTAACAAAAA-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
** * *** * *
4010 AGTGC--TTAACTAACAAAAATACTT
66 AGT-CATTTTGCT--TAGGCATGC-C
** * *** * * * ** ** ** ** *
4034 AAAGAGT-T-ACACCTAT-CTTAAA-AGTTAAAGCTATGAATCCATCA-TT-TTGCT-TAGGCAT
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT--CTTAAAGAGTTAAAGCTATCTGAAT
* * * *** * *
4092 GCA--AATTTT-CTAAAAAAATACTT
64 CCAGTCATTTTGCT-TAGGCATGC-C
** * ** * * * * ** ** *
4115 AAAGAGT-T-AC--CTAT-CTTAAAGAGTTAAAGCTATCTGAATCCATCA-TT-TTGCT-TAGGC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA---A-GAGTTAAAGCTATCTGA
* ** *** * *
4172 ATGCCAAT-ATTCTAAC--AAAAATACTT
62 AT-CCAGTCATT-TTGCTTAGGCATGC-C
* * *** * * * ** *** ** *
4198 AA-GAGT-T-ACACCTAT-CTT-AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAA
* * * ** *** * *
4257 TGCAATTATTCTAAC--AAAAATACTT
63 TCCAGTCATT-TTGCTTAGGCATGC-C
** * *** * * * ** *** ** *
4282 AAAGAGT-T-ACACCTAT-CTTAAA-A--TAAAGCTA-CTGAATCCAGTCATTTTGCT-TAGGCA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAA
* * *** * *
4339 TGCA---ATTTT-CTAAAAAAATACTT
63 TCCAGTCATTTTGCT-TAGGCATGC-C
** * *** * * * ** *** ** *
4362 AAAGAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAA
* *
4423 TGCCA---ATTATT-C-TA-ACA---A
63 T-CCAGTCATT-TTGCTTAGGCATGCC
* * * * * * * **
4441 AAATACT-TAA-AGAGTTACACTATCTTAAAGAGTTAAAGCTATCTGAATCCATCA-TT-TTGCT
1 AATTATTCTAACA-A---A-AATA-CTTAAAGAGTTACACCTATCTTAA---A-GAGTTAAAGCT
** * * * *
4502 -TAGGCATGCCA-TTATTCTAAAATACTTA---AAG--
56 ATCTGAAT-CCAGTCATT-T----TGCTTAGGCATGCC
* * * ** * * * ** *** ** *
4533 AGTTA-CCTATCTTAAAGAGTT-AA-AG------CTATCTGAATCCAGTCATTTTGCT-TAGGCA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAA
* *** * *
4588 TGCCA---ATTTT-CTAACAAAATACTT
63 T-CCAGTCATTTTGCTTA-GGCATGC-C
** * *** * * * ** *** ** *
4612 AAAGAGT-T-ACACCTAT-CTT-AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAA
* *** * *
4672 TGCCA---ATTATT-CTAACAAAATACTT
63 T-CCAGTCATT-TTGCTTA-GGCATGC-C
** * *** ** * * **** *** *
4697 AAAGAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCATCGAATCCATCATTTTTTAACAAAAAACT
1 AATTATTCTAACAAAAATACTTAAAGAGTT--A-CA-CCTAT-CTTAAAGAGTTAA-AGCTATCT
* ** * * *
4759 TAA-AGAGTTACATATCTAAAG-TTAAAGCTAT--A
60 GAATCCAG-T-CAT-T-T--TGCTT-AGGC-ATGCC
* ** * *** * * *** * *
4791 AATCCATT-TTGC----TTAGGCAAATTATTCTAACAAAAATACTTAAAGAGTT--ACCTATCTT
1 AAT-TATTCTAACAAAAATACTTAAA-GAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCTG
** *** ** *
4849 AA-AGAGT--TAAAGCTATCTGAAT-CC
61 AATCCAGTCATTTTGCT-TAGGCATGCC
* * ** *** * * ** * ** * * *
4873 AGTCATT-TTGCTTAGGCATGC-CAATTATTCTA-ACAAAATACTTAAAGAGTTACACCTATCTT
1 AATTATTCTAAC--AAAAATACTTAAAGAGT-TACAC-CTAT-CTTAAAGAGTTAAAGCTATCTG
** *** ** *
4935 AA-AGAGT--TAAAGCTATCTGAAT-CC
61 AATCCAGTCATTTTGCT-TAGGCATGCC
* * * * ** * * ** *** *
4959 ACCATT-TTGCTTAGGCATGCCAATTATTCTAACA-A-AAATACTTAAAGTTACCTATCTTAAAA
1 A--ATTATT-C-TA-ACA---AAAATACT-TAA-AGAGTTACACCT-ATCTTAAAGA-GTT-AAA
* *
5021 GTTAAAGCTATGAATCCAGTCATTTTGCTTAGGC-TGCC
53 GCT--A--TCTGAATCCAGTCATTTTGCTTAGGCATGCC
5059 AATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
5123 AGTCATTTT--TTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
5143 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTA--TTAAAGAGTTAAAGCTATCTGAAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
5205 ---CATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
5224 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTT-AA-AGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
5287 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
5309 AATTATTCTAAC-AAAA-A--TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
5370 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
5392 AATT-TTCTAACAAAAATACTT-AA-AGTTACA-CTATCTT-AAGAGTTAAAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
5452 A--AATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
5472 -A--ATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
5534 AATCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
5556 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
5621 AGTCA-TTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
5642 AATTATTCTAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
5706 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
5728 -ATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
5792 A---A-TTT-CTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
5809 AATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTT-AA-AGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
5871 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
5893 AATTATTCTAACAAAAATACTTAAAGAGTT--ACCTA--TTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
5954 -GTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
5975 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6039 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
6061 AATTATTCT-A-AAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCT--ATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6122 ---CATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
6141 AATTATTCT---AAAAATACTT-AAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT-A
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6201 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
6223 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6288 A-TCA--TT--TTAGGCATG-C
66 AGTCATTTTGCTTAGGCATGCC
6304 AATTATTCTAACAAAAATACTTAAAGAGTTACA--TATCTTAAAGAGTTAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6365 AGTCATTTTGCTTAGGCATG-C
66 AGTCATTTTGCTTAGGCATGCC
6386 AATTATTCTAACAAAAATACTTAAA-AGTTACACCTAT-TT-AAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6448 A-TCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
6469 ----ATTCTAAC-AAAATACTT-AAGAGTTACACCTATCTTAATGAGTT-AAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6525 A-TCA-TTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
6545 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6610 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
6632 AATTATTCTAAC-AAAATACTTAAAGAGTTACACCTATATTAAAGAGTTAAAGCTATCT-AAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6694 ---CATTTT--TTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
6711 AATTATTCTAAC-AAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTAT-T-AATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6772 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
6794 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTT--AGA-TTAAAGCTA--TGAAT--
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
6852 --TCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
6872 AATTATTCTAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
** ** ** * ***
6936 AGTC-TTTAACAAAAAACTTAAG
66 AGTCATTTTGC-TTAGGCATGCC
* * * ** * * ** * * *
6958 AGTTCA-CCTATCTTAAA-AGTTAAAGCTA-TGA-ATCC-ATCATT-TTG-CTTAGGCAGCAAT-
1 AATT-ATTCTAACAAAAATACTTAAAG--AGTTACA-CCTATC-TTAAAGAGTTA--AAGCTATC
* * * *** * *
7015 T--TTCTA-ACAAAAATACTTA---AAG--
59 TGAATCCAGTC-ATTTTGCTTAGGCATGCC
* * * ** * * * *
7037 AGTTACATCTAA-AGAGTTAAAGCTATCTGAATCCAG-T-CA-TTTTGCTTAGGCATGCCAATT-
1 AATTA-TTCTAACA-A---AAA--TA-CTTAA-AGAGTTACACCTAT-CTTA---AAG--AGTTA
** * ** * * * * **
7097 ATTCTAACAAAAATACTTAAAGTTACACCTAT-CTTAAAG-A-GTTA
51 AAGCTATC-TGAAT-C---CAG-T-CA-TTTTGCTT-AGGCATG-CC
* ** * * * **
7141 AAGCTA-TCTGAATCCAACATTTTGCTTAGGCATGCCAATTATTCTAACAAAATACTTAAAGAGT
1 AA-TTATTCT-AA--CAA-A-AATACTTA---AAG--AGTTA--C--AC-CTAT-CTTAAAGAGT
7205 TAAAGCTATCTGAATCCA-TCATTTTGCTTAGGCATGCC
49 TAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCC
7243 AATTATTCTAACAAAAATACTTAAAGAGTTAC-CCTATCTTAAAGAGTTAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
7305 AATCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
* *
7327 AATTTTTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
7392 AATCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
7414 AATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
* *
7477 A-TCA-TTT--TTA-ACA---A
66 AGTCATTTTGCTTAGGCATGCC
** * * * * ** * * *
7491 AAAAACT-TAA-AAATACACCTATCTTAAA-AGTTAAAGCTA--TGAATCAG-T-CA-TTTTGCT
1 AATTATTCTAACAAA-A-A--TA-CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAT-CT
* ** * * *
7548 -TAGGCAGCCAATTATT-C-TA-ACA---A
60 GAATCCAGTC-ATT-TTGCTTAGGCATGCC
* * * * * * ** ***
7571 AAATACT-TAA-AGAGTTACATATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-T
1 AATTATTCTAACA-A---AAATA-CTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTAT
** * * *** * *
7633 AGGCATGCCA---ATTATT-CTAACAAAATACTT
58 CTGAAT-CCAGTCATT-TTGCTTA-GGCATGC-C
** * *** * * * * *** *
7663 AAAGAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTTAACAAAAAA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA---AG--A--GTTAA-AGCTAT
* * * * ** * *
7725 CTTAA--GAGTTACACCTAT-CTTAAAGTTAAAGCT
58 CTGAATCCAG-T-CA-TTTTGCTT--AG-GCATGCC
* * * * *** * * ** * *
7758 ATATGAATCCATC-ATTTTGCTTAGGCAAGCAATTATTCTAACAAAATACTTAAAGAGTTACACC
1 A-ATTATTCTAACAAAAATACTTA---AAG-AGTTA--C--AC-CTAT-CTTAAAGAGTTAAAGC
* ** *** ** *
7822 TATCTTAA-AGAGT--TAAAGCTATCTGAAT-CC
55 TATCTGAATCCAGTCATTTTGCT-TAGGCATGCC
* * ** *** * * ** * ** * * *
7852 AGTCATT-TTGCTTAGGCATGC-CAATTATTCTA-ACAAAATACTTAAAGAGTTACACCTATCTT
1 AATTATTCTAAC--AAAAATACTTAAAGAGT-TACAC-CTAT-CTTAAAGAGTTAAAGCTATCTG
** *** ** *
7914 AA-AGAGT--TAAAGCTATCTGAAT-CC
61 AATCCAGTCATTTTGCT-TAGGCATGCC
* * ** *** * * ** * ***
7938 AGTCATT-TTGCTTAGGCATGC-CAATTATTCTAACAAAAATACTTAAAGAGTTAAAGCTATCTG
1 AATTATTCTAAC--AAAAATACTTAAAGAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCTG
*
8001 AAT-CAGCCATTTTGCTTAGGCATG-C
61 AATCCAGTCATTTTGCTTAGGCATGCC
* *
8026 AATTATTCTAAC-AAAA-ACTTAAAGAGTT--ACCTATCTTAAATAG-GAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
8084 AATCATTTTGCTTAGGCAT-CC
66 AGTCATTTTGCTTAGGCATGCC
*
8105 AATT-TTCTAACAAAAATACTTAAAGA-TTACACCTATCTT-AAGAGTTAAAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
8167 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
8189 AATTATTCTAACAAAAATACTTAAAGAG----ACCTATCTT-AAGAGTTAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
8247 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
8269 AATTATTCT---AAAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
8330 A---ATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
8349 -ATTATTCT---AAAAATACTTAAAGAGTT--A-CTATCTTAAAGAGTTAAAGCTATCT-AATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
8406 AGTCATTTTGCTTAGGCA---C
66 AGTCATTTTGCTTAGGCATGCC
8425 AATTATTCT-ACAAAAA-ACTT-AAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
8486 A-TCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
8507 AATT-TTCTAA-AAAAATACTTAAAGAGTTACACCTATCTT--AGAGTTAAAGCTA--T-AATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
8565 AGTCATTTTGCTTAGGCA-GCC
66 AGTCATTTTGCTTAGGCATGCC
8586 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATC-TAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
8650 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
8672 AATTATTCTAACAAAAATACTTAAAGAGTT--ACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
8735 AATCA-TTT-CTTAGGCA-GCC
66 AGTCATTTTGCTTAGGCATGCC
8754 AATTATTCTAACAAAAATACTTAAAGAGTT--ACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
8817 AGTCATTTTGCTTA-GCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
8838 AATT-TTCTAA-AAAAATACTT-AA-AGTTACA-CTATCTT-AAGAGTTAAAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
* *
8897 AATTA-TTT-CTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
8917 -A--ATTCTAACAAAAATA-TTAAAGAGTTACA-CTAT-TT-AAGAGTT-AAGCTATATGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
* *
8974 AATCATTTTGCTTAGGAATGCC
66 AGTCATTTTGCTTAGGCATGCC
8996 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
9059 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
9081 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
9144 AGTCA-TTTGCTTA-GCATGCC
66 AGTCATTTTGCTTAGGCATGCC
9164 AATTATTCTAAC-AAAATACTTAAAG-GTTACACCTATCTT-AAGAGTTAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
* ***
9224 AGTCATTTT--TTA-ACA-AAA
66 AGTCATTTTGCTTAGGCATGCC
** * *** * * * * ** * * * *
9242 AACTTAAATAGTTACACCTAT-CTTAAA-AGTTAAAGCTATATGAATCCA--T-CA-TTTTGCTT
1 AA-TT--ATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGTTAAAGCTAT-CTG
** * * *** * *
9301 AGGCAAG-CAATTATT-CTAACAAAAATACTT
61 AATCCAGTC-ATT-TTGCT--TAGGCATGC-C
** * *** * * * ** *** ** *
9331 AAAGAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAA
* * ** *** * *
9392 TGCCAATTATTCTAAC--AAAAATACTT
63 T-CCAGTCATT-TTGCTTAGGCATGC-C
** * *** * * * ** *** ** *
9418 AAAGAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAA
* * * ** *** * *
9479 TGCAATTATTCTAAC--AAAAATACTT
63 TCCAGTCATT-TTGCTTAGGCATGC-C
* * * ** * * * * ** * ** *
9504 AA--AGTGTTAC-ACTAT-CTTAAATA-TTAAAGCTA-CTGAATCCAGTCATTTGCTTAGGCATG
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGTTA-AAGC-TA-TC-TG
* * *** * *
9563 CAATTTC--TAAAAAATACTTA---AAG--
61 -AA-TCCAGT-CATTTTGCTTAGGCATGCC
* ** * ** * * * * * * ** * **
9586 AGTTACACCTATC-TTAAGAGTTAAAGCTATGAATCCATCATTTTGCTTCAATTATTCTAACAAA
1 AATTA-TTCTAACAAAAATACTTAAAG--A-G-TTACA-C-CTAT-CTT-AAAGAGT-TAA-AGC
* * * ** * * * **
9650 AAACTTAA-AGAGTTACACTAT-CTTAAAG-A-GTTA
55 TATCTGAATCCAG-T-CATTTTGCTT-AGGCATG-CC
* *** * * ***
9683 AAGCTA-TCTGAATCCATCATTTTGCTT-AGGCATGCCATTATTCTAAAAAATACTTAAAGAGTT
1 AA-TTATTCT-AA--CA--AAAATACTTAAAG-A-G---TTA--C--ACCTAT-CTTAAAGAGTT
* * * * * * * ** *
9746 ACACCTATCTTAA---AGGTTAAAGCTAT-CTAATCCA-GTC
50 AAAGCTATCTGAATCCA-G-T-CA-TTTTGCTTAGGCATGCC
* *** * * *** ** * * * *
9783 -ATT-TTGCT--TAGGCATGC--CAATTTTCTA-ACAAAAACTTAAAGAGTTACACCTATCTTAA
1 AATTATT-CTAACAAAAATACTTAAAGAGT-TACAC-CTATCTTAAAGAGTTAAAGCTATCTGAA
** *** ** *
9841 -AGAGT--TAAAGCTATCTGAAT-CC
63 TCCAGTCATTTTGCT-TAGGCATGCC
* * * *** * * ** * *** * * * *
9863 AGTCATTTGCT--TAGGCATGC-CAATTATTCTAACAAAAAACTT-AA-AGTTACACCTATCTTA
1 AATTA-TT-CTAACAAAAATACTTAAAGAGT-T-ACACCTATCTTAAAGAGTTAAAGCTATCTGA
* ** * *
9923 A--GAG---TTAAGCTATCGGAAT-CC
62 ATCCAGTCATTTTGCT-TAGGCATGCC
* * **
9944 AGTCATT-T--TGAAAA-ACTTAAA-AGTTACACCTATCTTAAA-AGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10003 A-TCA-TTTGCTTAGGCAT--C
66 AGTCATTTTGCTTAGGCATGCC
10021 AATTATTCTAACAAAAATACTTAAAGAGTT--A-C-ATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10082 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
10104 AATTATTCTAAC-AAAATACTT-AA-AGTT--ACCTATCTTAAAGATTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
**
10164 AACCATTTTGCTTAGGCATG-C
66 AGTCATTTTGCTTAGGCATGCC
10185 AATTATTCTAACAAAAATACTTAAAG-GTTACA-CTATCTT-AA-AGTTAAAGCTA-CTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10245 AGTCATTTTGCTTAGGCATG-C
66 AGTCATTTTGCTTAGGCATGCC
10266 AATT-TTCT-A-AAAAATACTTAAA-AGTTACACCTATCTT-AAGAGTTAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10324 A-TCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
10345 AATTATTCT-A-AAAAATACTTAAAGAGTT--A-C-ATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10404 A-TCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
10425 AATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTATCT-AATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10488 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
10510 AATTATTCTAAC-AAAA-AC--AAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10571 AGTCA-TTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
10592 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
10657 AATCA--TTGCTTAGGCA-GCC
66 AGTCATTTTGCTTAGGCATGCC
10676 AATTATTCTAACAAAAATAC-TAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTA--TGAAT-C
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10736 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
10758 AATT-TTCTAACAAAAATACTTAAAGAGTTACA--TATCTT-AAGAGTTAAAGCTATTTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10819 AGTCA-TTTGCTTAGGCATG-C
66 AGTCATTTTGCTTAGGCATGCC
10839 AATTATTCTAACAAAAATACTTAAAGAGTTACA--TAT-TT-AAGAGTTAAAGCTA--TGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
10898 A-TCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
10919 --TTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATAC-GAATC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAT-CTGAATC
10981 CAGTCATTTTGCTTAGGCATGCC
65 CAGTCATTTTGCTTAGGCATGCC
* * **
11004 AATTATTCTAAC-AAAA-AC-TAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAG
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
11066 AGTCATTTT-C-TAGGCAT---
66 AGTCATTTTGCTTAGGCATGCC
11083 AATT-TTCTAAC-AAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
11145 A-ACATTTTGCTTAGGCATG-C
66 AGTCATTTTGCTTAGGCATGCC
11165 AA--ATTCTAA-AAAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAAT--
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
11224 AGTCATTTTGCTTA-GCAAGCC
66 AGTCATTTTGCTTAGGCATGCC
* *
11245 AATTATTCTAAC-AAAATACTTAAAGTGTTACACCTATCTTAAAGAGTTAAAGCTATCTAAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
11309 A-CCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
11330 AATTATTCTAACAAAAAAACTTAAAGAGTTACACCTA-CTTAAAGAGTTAAAGCTATC--AATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
11392 AGTCATTTT-CTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
11413 AATTATTCT-A-AAAAATACTTAAAGAGTTACACCTATCTTAAAG-GTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
11475 AGTCATTTTTCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
11497 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
*
11562 AGTCATTTTCCTTA-G---GCC
66 AGTCATTTTGCTTAGGCATGCC
11580 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTT-AA-AGTTAAAGCTATCT--ATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
11641 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
11663 AATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
11727 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
11749 AATTATTCT-A-AAAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
11811 A-TCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
* *
11832 AATTATTCTAACAAAAATACTT-AA-AGTTACACCTATCTTAAAGAGTTAAAGCTA-ATGAATCA
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
11894 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
11916 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGA-TTAAAGCTATCTGAATCT
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
11980 AGTCATTTTGCTTAGGCATGCC
66 AGTCATTTTGCTTAGGCATGCC
*
12002 AATTATTCTAAC-AAAATACTT-AA-AGTTACACCTATCTT-AAGAGTTAAAGCTATCGGAATCC
1 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
12063 AGTCATTTT
66 AGTCATTTT
12072 TAACAAAAAT
Statistics
Matches: 9934, Mismatches: 944, Indels: 2036
0.77 0.07 0.16
Matches are distributed among these distances:
72 5 0.00
73 2 0.00
74 11 0.00
75 15 0.00
76 80 0.01
77 277 0.03
78 488 0.05
79 689 0.07
80 719 0.07
81 960 0.10
82 1121 0.11
83 1034 0.10
84 1131 0.11
85 1198 0.12
86 1004 0.10
87 453 0.05
88 93 0.01
89 57 0.01
90 34 0.00
91 44 0.00
92 67 0.01
93 40 0.00
94 51 0.01
95 36 0.00
96 38 0.00
97 27 0.00
98 24 0.00
99 27 0.00
100 41 0.00
101 54 0.01
102 31 0.00
103 12 0.00
104 15 0.00
105 9 0.00
106 4 0.00
107 8 0.00
108 8 0.00
109 6 0.00
110 8 0.00
111 7 0.00
112 1 0.00
114 5 0.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (87 bp):
AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
AGTCATTTTGCTTAGGCATGCC
Found at i:640 original size:19 final size:19
Alignment explanation
Indices: 603--642 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
593 TAAAAAAATA
*
603 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
622 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
641 CT
1 CT
643 GAATCCAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:728 original size:19 final size:19
Alignment explanation
Indices: 691--730 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
681 AACAAAAATA
*
691 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
710 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
729 CT
1 CT
731 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:815 original size:19 final size:19
Alignment explanation
Indices: 778--817 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
768 AACAAAAATA
*
778 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
797 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
816 CT
1 CT
818 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:894 original size:19 final size:19
Alignment explanation
Indices: 859--896 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
849 TAAAAAATAC
*
859 TAAAGAGTTACACCTATCT
1 TAAAGAGTTAAACCTATCT
*
878 TAAAGAGTTAAAGCTATCT
1 TAAAGAGTTAAACCTATCT
897 GAATCCAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
TAAAGAGTTAAACCTATCT
Found at i:1147 original size:19 final size:19
Alignment explanation
Indices: 1110--1149 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
1100 AACAAAAATA
*
1110 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
1129 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
1148 CT
1 CT
1150 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:1318 original size:19 final size:18
Alignment explanation
Indices: 1280--1318 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
1270 AACAAAAATA
*
1280 CTTAAAGAGTTACACTAT
1 CTTAAAGAGTTAAACTAT
1298 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAA-CTAT
1317 CT
1 CT
1319 GAATCCTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGAGTTAAACTAT
Found at i:1964 original size:19 final size:19
Alignment explanation
Indices: 1927--1966 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
1917 TAACAAAATA
*
1927 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
1946 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
1965 CT
1 CT
1967 GAATCCATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:2084 original size:66 final size:68
Alignment explanation
Indices: 2007--2146 Score: 241
Period size: 68 Copynumber: 2.1 Consensus size: 68
1997 TTACACCTAT
*
2007 CTTAAA-AGTTAAAGCTATATGAATCCA-TCATTTTGCTTTGGCATG-CAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
2069 ATA
66 ATA
*
2072 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
2137 ATA
66 ATA
2140 CTTAAAG
1 CTTAAAG
2147 TTACACCTAT
Statistics
Matches: 70, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
65 6 0.09
66 20 0.29
67 17 0.24
68 27 0.39
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (68 bp):
CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
ATA
Found at i:2149 original size:66 final size:65
Alignment explanation
Indices: 2007--2149 Score: 234
Period size: 66 Copynumber: 2.2 Consensus size: 65
1997 TTACACCTAT
*
2007 CTTAAAAGTTAAAGCTATATGAATCCATCATTTTGCTTTGGCATGCAATTATTCTAACAAAAATA
1 CTTAAAAGTTAAAGCTATATGAATCCATCATTTTGCTTAGGCATGCAATTATTCTAACAAAAATA
*
2072 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAA-AGTTAAAGCTATATGAATCCA-TCATTTTGCTTAGGCATG-CAATTATTCTAACAAAA
2137 ATA
63 ATA
2140 CTT-AAAGTTA
1 CTTAAAAGTTA
2150 CACCTATTAA
Statistics
Matches: 73, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
65 6 0.08
66 25 0.34
67 19 0.26
68 23 0.32
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (65 bp):
CTTAAAAGTTAAAGCTATATGAATCCATCATTTTGCTTAGGCATGCAATTATTCTAACAAAAATA
Found at i:2232 original size:83 final size:83
Alignment explanation
Indices: 2073--2232 Score: 277
Period size: 83 Copynumber: 1.9 Consensus size: 83
2063 ACAAAAATAC
**
2073 TTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAA
1 TTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAA
*
2138 TACTTAAAGTTACACCTA
66 TACTAAAAGTTACACCTA
2156 TTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTG-TTAGGCATGCCAATTATTCTAACAAAAA
1 TTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAA
2220 TACTAAAGAGTTA
66 TACTAAA-AGTTA
2233 AAGCTATCTG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
82 34 0.47
83 39 0.53
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (83 bp):
TTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAA
TACTAAAAGTTACACCTA
Found at i:2284 original size:67 final size:67
Alignment explanation
Indices: 2156--2300 Score: 240
Period size: 67 Copynumber: 2.2 Consensus size: 67
2146 GTTACACCTA
2156 TTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGTTAGGCATGCCAATTATTCTAACAAAAAT
1 TTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGTTAGGCATGCCAATTATTCTAACAAAAAT
2221 AC
66 AC
**
2223 -TAAAGAGTTAAAGCTATCTGAATTCCAGTCATTTTGCTTAGGCATG-CAATTATTCTAACAAAA
1 TTAAAGAGTTAAAGCTATCTGAA-TCCAACCATTTTG-TTAGGCATGCCAATTATTCTAACAAAA
2286 ATAC
64 ATAC
2290 TTAAAGAGTTA
1 TTAAAGAGTTA
2301 CCTATCTTAA
Statistics
Matches: 73, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
66 22 0.30
67 32 0.44
68 19 0.26
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (67 bp):
TTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGTTAGGCATGCCAATTATTCTAACAAAAAT
AC
Found at i:2388 original size:17 final size:17
Alignment explanation
Indices: 2366--2398 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
2356 ATTCTAACAA
2366 AATACTTAAAGAGTTAC
1 AATACTTAAAGAGTTAC
2383 AATACTTAAAGAGTTA
1 AATACTTAAAGAGTTA
2399 AAGCTATCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.30
Consensus pattern (17 bp):
AATACTTAAAGAGTTAC
Found at i:2395 original size:82 final size:84
Alignment explanation
Indices: 2223--2505 Score: 445
Period size: 81 Copynumber: 3.4 Consensus size: 84
2213 ACAAAAATAC
2223 TAAAGAGTTAAAGCTATCTGAATTCCAGTCATTTTGCTTAGGCATG-CAATTATTCTAACAAAAA
1 TAAAGAGTTAAAGCTATCTGAA-TCCA-TCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAA
*
2287 TACTTAAAGAGTTAC-CTATCT
63 TACTTAAAGAGTTACAATATCT
2308 T-AAGAGTTAAAGCTATCTGAATCCATCATTTTGCTT-GGCATGCCAATTATTCTAACAAAATAC
1 TAAAGAGTTAAAGCTATCTGAATCCATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAATAC
2371 TTAAAGAGTTACAATA-CT
66 TTAAAGAGTTACAATATCT
*
2389 TAAAGAGTTAAAGCTATCTGAATCCATCATTTT-CTTAGGCA-GCCAATTATTCTAAAAAAATAC
1 TAAAGAGTTAAAGCTATCTGAATCCATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAATAC
*
2452 TTAAAGAGTTACACCTATCT
66 TTAAAGAGTTACA-ATATCT
2472 TAAAGAGTTAAAGCTATCTGAATCCAATCATTTT
1 TAAAGAGTTAAAGCTATCTGAATCC-ATCATTTT
2506 TACAAATTAT
Statistics
Matches: 188, Mismatches: 3, Indels: 15
0.91 0.01 0.07
Matches are distributed among these distances:
81 65 0.35
82 63 0.34
83 31 0.16
84 28 0.15
85 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (84 bp):
TAAAGAGTTAAAGCTATCTGAATCCATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAATAC
TTAAAGAGTTACAATATCT
Found at i:2488 original size:19 final size:19
Alignment explanation
Indices: 2451--2490 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
2441 TAAAAAAATA
*
2451 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
2470 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
2489 CT
1 CT
2491 GAATCCAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:2593 original size:134 final size:134
Alignment explanation
Indices: 2390--2639 Score: 396
Period size: 134 Copynumber: 1.8 Consensus size: 134
2380 TACAATACTT
* * *
2390 AAAGAGTTAAAGCTATCTGAATCCATCATTTTCTTAGGCAGCCAATTATTCTAAAAAAATACTTA
1 AAAGAGTTAAAGCTA-CTAAAGCCATCATTTGCTTAGGCAG-C-ATTATTCTAAAAAAATACTTA
2455 AAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTTACAAATTATAAAC
63 AAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTTACAAATTATAAAC
2520 ACCTATA
128 ACCTATA
*
2527 AAAGAGTTAAAGCTA-TAAAGCCATGTATTTGCTTAGGCAG-ATTATTCTAACAAAAATACTTAA
1 AAAGAGTTAAAGCTACTAAAGCCAT-CATTTGCTTAGGCAGCATTATTCTAA-AAAAATACTTAA
*
2590 AGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
64 AGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTT
2640 GCTTAGGCAT
Statistics
Matches: 106, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
133 10 0.09
134 61 0.58
135 7 0.07
136 13 0.12
137 15 0.14
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (134 bp):
AAAGAGTTAAAGCTACTAAAGCCATCATTTGCTTAGGCAGCATTATTCTAAAAAAATACTTAAAG
AGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTTACAAATTATAAACACC
TATA
Found at i:2622 original size:19 final size:19
Alignment explanation
Indices: 2585--2624 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
2575 AACAAAAATA
*
2585 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
2604 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
2623 CT
1 CT
2625 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:2828 original size:147 final size:146
Alignment explanation
Indices: 2604--2919 Score: 505
Period size: 147 Copynumber: 2.1 Consensus size: 146
2594 TTACACCTAT
2604 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
2669 TACTTAAAAGTTACACCTATATTAAAGAGTTAAAGCTATCTG-A-ATCA-TTTGCTTAGGCATGC
66 TACTTAAAAGTT--A-CTATATTAAAGAGTTAAAGCTAACTGAACATCATTTTGCTTAGGCATGC
2731 CAATTATTCTAACAAAAATA
128 CAATT-TTCTAACAAAAATA
2751 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATG-CAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
2815 TACTTAAAGAGTTACTATCTTAAAGAGTTAAAGCTAACTGAATCCATCATTTTGCTTAGGCATGC
66 TACTTAAA-AGTTACTATATTAAAGAGTTAAAGCTAACTGAA--CATCATTTTGCTTAGGCATGC
2880 CAATTTTCTAACAAAAATA
128 CAATTTTCTAACAAAAATA
* *
2899 CTTAAAGAGTTACACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
2920 TAAGAGTTAA
Statistics
Matches: 159, Mismatches: 4, Indels: 11
0.91 0.02 0.06
Matches are distributed among these distances:
144 24 0.15
145 2 0.01
146 25 0.16
147 51 0.32
148 37 0.23
149 20 0.13
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.33
Consensus pattern (146 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
TACTTAAAAGTTACTATATTAAAGAGTTAAAGCTAACTGAACATCATTTTGCTTAGGCATGCCAA
TTTTCTAACAAAAATA
Found at i:3097 original size:18 final size:18
Alignment explanation
Indices: 3065--3099 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3055 AAAATACTTA
*
3065 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
3083 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
3100 GAATCCAGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:3262 original size:18 final size:18
Alignment explanation
Indices: 3227--3262 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
3217 AACAAAAAAA
*
3227 CTTAAGAGTTACACCTAT
1 CTTAAGAGTTAAACCTAT
*
3245 CTTAAGAGTTAAAGCTAT
1 CTTAAGAGTTAAACCTAT
3263 ATGAATCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (18 bp):
CTTAAGAGTTAAACCTAT
Found at i:3344 original size:18 final size:18
Alignment explanation
Indices: 3312--3346 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3302 AAAATACTTA
*
3312 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
3330 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
3347 GAATCCAGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:3427 original size:18 final size:18
Alignment explanation
Indices: 3395--3429 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3385 AAAATACTTA
*
3395 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
3413 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
3430 GAATCCAGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:3513 original size:18 final size:18
Alignment explanation
Indices: 3481--3515 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3471 AAAATACTTA
*
3481 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
3499 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
3516 GAATCCATCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:3672 original size:18 final size:18
Alignment explanation
Indices: 3638--3674 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
3628 CTAACAAAAA
*
3638 TTAAGAGTTACACCTATC
1 TTAAGAGTTAAACCTATC
*
3656 TTAAGAGTTAAAGCTATC
1 TTAAGAGTTAAACCTATC
3674 T
1 T
3675 GAATCCAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (18 bp):
TTAAGAGTTAAACCTATC
Found at i:3835 original size:19 final size:19
Alignment explanation
Indices: 3798--3837 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
3788 AACAAAAATA
*
3798 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
3817 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
3836 CT
1 CT
3838 GAATCCAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:3919 original size:19 final size:19
Alignment explanation
Indices: 3882--3921 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
3872 TAACAAAATA
*
3882 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
3901 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
3920 CT
1 CT
3922 GAATCCACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:4003 original size:19 final size:19
Alignment explanation
Indices: 3966--4003 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
3956 TAACAAAAAA
*
3966 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
3985 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
4004 GAATCCAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:4066 original size:64 final size:64
Alignment explanation
Indices: 3955--4074 Score: 224
Period size: 64 Copynumber: 1.9 Consensus size: 64
3945 GCCAATTATT
3955 CTAACAAAAAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATGAATCCAGTGCTTAA
1 CTAACAAAAAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATGAATCCAGTGCTTAA
4019 CTAACAAAAATACTTAAAGAGTTACACCTATCTTAAA-AGTTAAAGCTATGAATCCA
1 CTAACAAAAA-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATGAATCCA
4075 TCATTTTGCT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
64 29 0.53
65 26 0.47
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (64 bp):
CTAACAAAAAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATGAATCCAGTGCTTAA
Found at i:4230 original size:18 final size:18
Alignment explanation
Indices: 4195--4232 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
4185 AACAAAAATA
*
4195 CTTAAGAGTTACACCTAT
1 CTTAAGAGTTAAACCTAT
*
4213 CTTAAGAGTTAAAGCTAT
1 CTTAAGAGTTAAACCTAT
4231 CT
1 CT
4233 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (18 bp):
CTTAAGAGTTAAACCTAT
Found at i:4396 original size:19 final size:19
Alignment explanation
Indices: 4359--4398 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
4349 TAAAAAAATA
*
4359 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
4378 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
4397 CT
1 CT
4399 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:4484 original size:19 final size:18
Alignment explanation
Indices: 4446--4484 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
4436 AACAAAAATA
*
4446 CTTAAAGAGTTACACTAT
1 CTTAAAGAGTTAAACTAT
4464 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAA-CTAT
4483 CT
1 CT
4485 GAATCCATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGAGTTAAACTAT
Found at i:4645 original size:18 final size:18
Alignment explanation
Indices: 4613--4647 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4603 AAAATACTTA
*
4613 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
4631 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
4648 GAATCCAGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:4763 original size:148 final size:136
Alignment explanation
Indices: 4593--4881 Score: 379
Period size: 148 Copynumber: 2.0 Consensus size: 136
4583 AGGCATGCCA
* *
4593 ATTTTCTAACAAAATACTTAAAGAGTTACACCTATCTTAAGAGTTAAAGCTATCTGAATCCAGTC
1 ATTTTCTAACAAAAAACTTAAAGAGTTACA--TATC-TAA-AGTTAAAGCTA--TAAAT-C---C
4658 ATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAG
56 ATTTTGCTTAGGCA----AATTATTCTAACAAAAATACTTAAAGAGTT--ACCTATCTTAAAGAG
4722 TTAAAGC-ATC-GAATCCA-TC
115 TTAAAGCTATCTGAATCCAGTC
*
4741 ATTTTTTAACAAAAAACTTAAAGAGTTACATATCTAAAGTTAAAGCTATAAATCCATTTTGCTTA
1 ATTTTCTAACAAAAAACTTAAAGAGTTACATATCTAAAGTTAAAGCTATAAATCCATTTTGCTTA
4806 GGCAAATTATTCTAACAAAAATACTTAAAGAGTTACCTATCTTAAAGAGTTAAAGCTATCTGAAT
66 GGCAAATTATTCTAACAAAAATACTTAAAGAGTTACCTATCTTAAAGAGTTAAAGCTATCTGAAT
4871 CCAGTC
131 CCAGTC
4877 ATTTT
1 ATTTT
4882 GCTTAGGCAT
Statistics
Matches: 134, Mismatches: 3, Indels: 20
0.85 0.02 0.13
Matches are distributed among these distances:
133 22 0.16
134 15 0.11
135 24 0.18
136 7 0.05
138 15 0.11
141 1 0.01
142 4 0.03
144 11 0.08
145 3 0.02
146 4 0.03
148 28 0.21
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (136 bp):
ATTTTCTAACAAAAAACTTAAAGAGTTACATATCTAAAGTTAAAGCTATAAATCCATTTTGCTTA
GGCAAATTATTCTAACAAAAATACTTAAAGAGTTACCTATCTTAAAGAGTTAAAGCTATCTGAAT
CCAGTC
Found at i:4941 original size:86 final size:86
Alignment explanation
Indices: 4747--12071 Score: 4936
Period size: 82 Copynumber: 87.8 Consensus size: 86
4737 CATCATTTTT
* *
4747 TAACAAAAAACTTAAAGAGTTACA--TATC-T-AA-AGTTAAAGCTA--TAAAT-C---CATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
4801 GCTTAGGCA----AATTATTC
66 GCTTAGGCATGCCAATTATTC
4818 TAACAAAAATACTTAAAGAGTT--ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
4881 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
4903 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCA-CCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
4967 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
4988 TAACAAAAATACTT-AA-AGTT--ACCTATCTTAAA-AGTTAAAGCTA--TGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
5046 TGCTTAGGC-TGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
5067 TAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
5132 --TTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
5151 TAACAAAAATACTTAAAGAGTTACACCTA--TTAAAGAGTTAAAGCTATCTGAAT-C---CATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
5210 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
5232 TAACAAAAATACTTAAAGAGTTACACCTATCTT-AA-AGTTAAAGCTATCTGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
5295 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
5317 TAACAAAA-A--TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
5379 GCTTAGGCATGCCAATT-TTC
66 GCTTAGGCATGCCAATTATTC
* *
5399 TAACAAAAATACTT-AA-AGTTACA-CTATCTT-AAGAGTTAAAGCTATATGAATCCA--AATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
5458 TGCTTAGGCATGCC-A--ATTC
65 TGCTTAGGCATGCCAATTATTC
* *
5477 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAATCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
5542 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
5564 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCA-TT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
5628 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
5650 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
5715 GCTTAGGCATGCC-ATTATTC
66 GCTTAGGCATGCCAATTATTC
5735 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCA---A-TT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
5796 T-CTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
5817 TAAAAAAATACTTAAAGAGTTACACCTATCTT-AA-AGTTAAAGCTATCTGAATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
5880 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
5901 TAACAAAAATACTTAAAGAGTT--ACCTA--TTAAAGAGTTAAAGCTATCTGAATCC-GTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
5961 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
5983 TAACAAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
6047 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
6069 TAA-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCT--ATCC---CATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
6128 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
*
6149 T-A-AAAATACTT-AAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT-AAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
6210 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
6231 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCA-TCA--T
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
6293 T--TTAGGCATG-CAATTATTC
65 TGCTTAGGCATGCCAATTATTC
6312 TAACAAAAATACTTAAAGAGTTACA--TATCTTAAAGAGTTAAAGCTA--TGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
6373 TGCTTAGGCATG-CAATTATTC
65 TGCTTAGGCATGCCAATTATTC
6394 TAACAAAAATACTTAAA-AGTTACACCTAT-TT-AAGAGTTAAAGCTATCTGAATCCA-TCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
6455 TGCTTAGGCATGCC----ATTC
65 TGCTTAGGCATGCCAATTATTC
*
6473 TAACAAAATACTT-AAGAGTTACACCTATCTTAATGAGTT-AAGCTA--TGAATCCA-TCA-TTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
6532 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
6553 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
6618 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
6640 TAACAAAATACTTAAAGAGTTACACCTATATTAAAGAGTTAAAGCTATCT-AAT-C---CATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
6700 --TTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
6719 TAACAAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTAT-T-AATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
6781 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
6802 TAACAAAAATACTTAAAGAGTTACACCTATCTT--AGA-TTAAAGCTA--TGAAT----TCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
6858 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
6880 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTC-TTTA
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
* ** ** * *** * *
6944 ACAAAAAACTTAAGAGTTCA-CC
66 GC-TTAGGCATGCCAATT-ATTC
* * * * ** * * *
6966 TATCTTAAA-AGTTAAAGCTA-TGA-ATCC-ATCATT-TTG-CTTAGGCAGCAATTTTCT-AA-C
1 TAAC-AAAATACTTAAAG--AGTTACA-CCTATC-TTAAAGAGTTA--AAGC---TATCTGAATC
* * ** * * ** *
7023 AAAAAT-ACTTAAAGAGTTA--CAT-CTAAAGAGT-
56 --CAGTCA-TT-TTG-CTTAGGCATGCCAATTATTC
** * ** * * * * ** * **
7054 T-A-AAGCTATCTGAATCCAG-T-CA-TTTTGCTTAGGCATGCCAATT-ATTCTAACAAAAATAC
1 TAACAAAATA-CTTAA-AGAGTTACACCTAT-CTTA---AAG--AGTTAAAGCTATC-TGAAT-C
* * * * * * *
7113 TTAAAGTTACACCTAT-CTTAAAGAGTTAAAG-CTATCTGAATC
56 ---CAG-T-CA-TTTTGCTT--AG-G--CATGCCAAT-T-ATTC
* *** * * * **
7155 CAACATTTTGCTTAGGCATGCCAATTATTCTAACAAAATACTTAAAGAGTTAAAGCTATCTGAAT
1 TAACAAAATACTTA---AAG--AGTTA--C--AC-CTAT-CTTAAAGAGTTAAAGCTATCTGAAT
7220 CCA-TCATTTTGCTTAGGCATGCCAATTATTC
55 CCAGTCATTTTGCTTAGGCATGCCAATTATTC
*
7251 TAACAAAAATACTTAAAGAGTTAC-CCTATCTTAAAGAGTTAAAGCTA--TGAATCCAATCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
*
7313 TGCTTAGGCATGCCAATTTTTC
65 TGCTTAGGCATGCCAATTATTC
* *
7335 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAATCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
7400 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
7422 TAAAAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCCA-TCA-TTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
* * ** *
7484 --TTA-ACA---AAAAAACT-
66 GCTTAGGCATGCCAATTATTC
* * * * ** * * * * ** *
7498 TAAAAATACACCTATCTTAAA-AGTTAAAGCTA--TGAATCAG-T-CA-TTTTGCT-TAGGCAGC
1 TAACAA-A-A--TA-CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAT-CTGAATCCAGT
* * * *
7556 CAATTATT-C-TA-ACA---AAAATACT-
60 C-ATT-TTGCTTAGGCATGCCAATTATTC
* * * ** *** ** *
7578 TAA-AGAGTTACATATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCATGC
1 TAACA-A---A-ATA-CTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAAT-C
* *** * * ** *
7641 CA---ATTATT-CTAACAAAATACTTAAAGAGT-
56 CAGTCATT-TTGCTTA-GGCATGC-CAATTATTC
** * * * * *** * * *
7670 T-AC-ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTTAACAAAAAACTTAA--G
1 TAACAAAATA-CTTAAAGAGTTACACCTATCTTAA---AG--A--GTTAA-AGCTATCTGAATCC
* * ** * * * *
7731 AGTTACACCTAT-CTTAAAGTTAAAGCTATATGAATC
57 AG-T-CA-TTTTGCTT--AG-GCATGCCA-ATTATTC
* * *** * * ** * * * *
7767 CATCATTTTGCTTAGGCAAGCAATTATTCTAACAAAATACTTAAAGAGTTACACCTATCTTAA-A
1 TAACAAAATACTTA---AAG-AGTTA--C--AC-CTAT-CTTAAAGAGTTAAAGCTATCTGAATC
* *** ** *
7831 GAGT--TAAAGCTATCTGAAT-CCAGTCATT-TTGC
56 CAGTCATTTTGCT-TAGGCATGCCA---ATTATT-C
* *** * * ** * ** * * * **
7863 TTA-GGCATGC-CAATTATTCTA-ACAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--T
1 TAACAAAATACTTAAAGAGT-TACAC-CTAT-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCAT
*** ** *
7922 AAAGCTATCTGAAT-CCAGTCATT-TTGC
63 TTTGCT-TAGGCATGCCA---ATTATT-C
* *** * * ** * *** *
7949 TTA-GGCATGC-CAATTATTCTAACAAAAATACTTAAAGAGTTAAAGCTATCTGAAT-CAGCCAT
1 TAACAAAATACTTAAAGAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCAT
8011 TTTGCTTAGGCATG-CAATTATTC
63 TTTGCTTAGGCATGCCAATTATTC
* * *
8034 TAACAAAA-ACTTAAAGAGTT--ACCTATCTTAAATAG-GAAAGCTA--TGAATCCAATCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
8093 GCTTAGGCAT-CCAATT-TTC
66 GCTTAGGCATGCCAATTATTC
*
8112 TAACAAAAATACTTAAAGA-TTACACCTATCTT-AAGAGTTAAAGCTATATGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
8175 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
8197 TAACAAAAATACTTAAAGAG----ACCTATCTT-AAGAGTTAAAGCTA--TGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
8255 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
8277 T-A-AAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAATCCA---ATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
8336 GCTTAGGCATGCC-ATTATTC
66 GCTTAGGCATGCCAATTATTC
8356 T-A-AAAATACTTAAAGAGTT--A-CTATCTTAAAGAGTTAAAGCTATCT-AATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
8415 GCTTAGGCA---CAATTATTC
66 GCTTAGGCATGCCAATTATTC
*
8433 T-ACAAAAAACTT-AAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCCA-TCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
8494 GCTTAGGCATGCCAATT-TTC
66 GCTTAGGCATGCCAATTATTC
*
8514 TAAAAAAATACTTAAAGAGTTACACCTATCTT--AGAGTTAAAGCTA--T-AATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
8574 GCTTAGGCA-GCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
8594 TAACAAAAATACTTAAAGAGTTACACCTATC-TAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
8658 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
8680 TAACAAAAATACTTAAAGAGTT--ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCA-TT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
8742 T-CTTAGGCA-GCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
8762 TAACAAAAATACTTAAAGAGTT--ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
8825 TGCTTA-GCATGCCAATT-TTC
65 TGCTTAGGCATGCCAATTATTC
* * * *
8845 TAAAAAAATACTT-AA-AGTTACA-CTATCTT-AAGAGTTAAAGCTATATGAATCCAATTA-TTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
8905 -CTTAGGCATGCC-A--ATTC
66 GCTTAGGCATGCCAATTATTC
* *
8922 TAACAAAAATA-TTAAAGAGTTACA-CTAT-TT-AAGAGTT-AAGCTATATGAATCCAATCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
*
8982 TGCTTAGGAATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
9004 TAACAAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAAT-CAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
9067 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
9089 TAACAAAAATACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAAT-CAGTCA-TT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
9151 TGCTTA-GCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
9172 TAACAAAATACTTAAAG-GTTACACCTATCTT-AAGAGTTAAAGCTA--TGAATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
* *** **
9233 --TTA-ACA-AAAAACTTAAATAG
66 GCTTAGGCATGCCAA-TT--ATTC
* ** * * * * ** * * * * ** *
9253 TTAC-ACCTATCTTAAA-AGTTAAAGCTATATGAATCCA--T-CA-TTTTGCTTAGGCAAG-CAA
1 TAACAAAATA-CTTAAAGAGTTACACCTATCTTAA-AGAGTTAAAGCTAT-CTGAATCCAGTC-A
* *** * * ** *
9311 TTATT-CTAACAAAAATACTTAAAGAGT-
62 TT-TTGCT--TAGGCATGC-CAATTATTC
** * * * ** *** ** * * *
9338 T-AC-ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCATGCCAATT
1 TAACAAAATA-CTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAAT-CCAGTC
** *** * * ** *
9400 ATTCTAAC--AAAAATACTTAAAGAGT-
61 ATT-TTGCTTAGGCATGC-CAATTATTC
** * * * ** *** ** * * * *
9425 T-AC-ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCATGCAATTA
1 TAACAAAATA-CTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAATCCAGTCA
** *** * * * *
9487 TTCTAAC--AAAAATACTTAA--AGTG
62 TT-TTGCTTAGGCATGC-CAATTATTC
* ** * * * * ** * ** ** * *
9510 TTACACTAT-CTTAAATA-TTAAAGCTA-CTGAATCCAGTCATTTGCT-TAGGCAT---G-CAAT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGTTA-AAGCTATCTGAATCCAGTCATT
* *** * * ** *
9567 TT-CTAAAAAATACTTAAAGAGT-
64 TTGCTTAGGCATGC-CAATTATTC
** * * * ** * * * *
9589 T-AC-ACCTATCTT-AAGAGTTA-A---AGC-T-ATGA-ATCCATC-AT-T--TTGC-TTCAATT
1 TAACAAAATA-CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTC-ATT
* *** ** * ** *
9639 ATT-CTAACAAAAAACTTAAAGAGT-
64 -TTGCTTA-GGCATGC-CAATTATTC
** * * * * ** ** *
9663 T-ACACTAT-CTTAAAGAGTTAAAGCTATCTGAATCCATCA-TT-TTGCT-TAGGCATGCCA-T-
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAA---A-GAGTTAAAGCTATCTGAAT-CCAGTC
* * *** * * ** *
9721 -TATT-CTAAAAAATACTTAAAGAGT-
61 ATTTTGCTTAGGCATGC-CAATTATTC
** * * ** *** ** *
9745 T-AC-ACCTATCTTAAAG-GTTAAAGCTATC-TAATCCAGTCATTTTGCT-TAGGCATGCCA---
1 TAACAAAATA-CTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAAT-CCAGTC
* *** ** * ** *
9802 ATTTT-CTAACAAAAACTTAAAGAGT-
61 ATTTTGCTTAGGCATGC-CAATTATTC
** * * * ** * ** ** *
9827 T-AC-ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTGCT-TAGGCATGCCA---A
1 TAACAAAATA-CTTAAAGAGTTACACCTATCTTAA-AGAGTTA-AAGCTATCTGAAT-CCAGTCA
* *** ***
9886 TTATT-C-TA-ACA-AAAAACTTAAAG
62 TT-TTGCTTAGGCATGCCAA-TTATTC
* ** * ** * * * *
9909 TTAC-ACCTATCTT-AAGAGTTA-AGCTATCGGAATCCAGTCATTTTGAAA---AACTTAA--AA
1 TAACAAAATA-CTTAAAGAGTTACACCTATCTTAA---AG--A-GTT-AAAGCTATCTGAATCCA
* * * * ** *
9966 GTTACACCTAT-CTTA--AAAGTTAAAGCTA-TC
58 G-T-CA-TTTTGCTTAGGCATG-CCAA-TTATTC
** * * * ***
9996 TGAATCCATCATTTGCTTAGGCATCAATTATTCTAACAAAAATACTTAAAGAGTT--A-C-ATCT
1 T-AA--CA--AAATACTT----A--AA-GAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCT
* ** *** ** *
10057 TAA-AGAGT--TAAAGCTATCTGAAT-CCAGTCATT-TTGC
51 GAATCCAGTCATTTTGCT-TAGGCATGCCA---ATTATT-C
* * * * * * *
10093 TTAGGCATGCCAATTATTCTAACAAAATACTTAAAGTTACCTATCTTAAAGATTTAAAGCTATCT
1 -TA---A---CAA-AATACT---TAAAGAGTT--A--CACCTATCTTAAAGAGTTAAAGCTATCT
**
10158 GAATCCAACCATTTTGCTTAGGCATG-CAATTATTC
51 GAATCCAGTCATTTTGCTTAGGCATGCCAATTATTC
10193 TAACAAAAATACTTAAAG-GTTACA-CTATCTT-AA-AGTTAAAGCTA-CTGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
10253 TGCTTAGGCATG-CAATT-TTC
65 TGCTTAGGCATGCCAATTATTC
10273 TAA-AAAATACTTAAA-AGTTACACCTATCTT-AAGAGTTAAAGCTA--TGAATCCA-TCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
10332 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
10353 TAA-AAAATACTTAAAGAGTT--A-C-ATCTTAAAGAGTTAAAGCTATCTGAATCCA-TCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
10412 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
* *
10433 TAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTATCT-AATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
10497 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
10518 TAACAAAA-AC--AAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCA-TTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
10579 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
*
10600 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCA--T
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
10663 TGCTTAGGCA-GCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
10684 TAACAAAAATAC-TAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTA--TGAAT-CAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
10744 TGCTTAGGCATGCCAATT-TTC
65 TGCTTAGGCATGCCAATTATTC
*
10765 TAACAAAAATACTTAAAGAGTTACA--TATCTT-AAGAGTTAAAGCTATTTGAATCCAGTCA-TT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
10826 TGCTTAGGCATG-CAATTATTC
65 TGCTTAGGCATGCCAATTATTC
10847 TAACAAAAATACTTAAAGAGTTACA--TAT-TT-AAGAGTTAAAGCTA--TGAATCCA-TCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
10905 TGCTTAGGCATGCC--TTATTC
65 TGCTTAGGCATGCCAATTATTC
10925 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATAC-GAATCCAGTCATT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAT-CTGAATCCAGTCATT
10989 TTGCTTAGGCATGCCAATTATTC
64 TTGCTTAGGCATGCCAATTATTC
* * **
11012 TAACAAAA-AC-TAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
11075 -C-TAGGCAT---AATT-TTC
66 GCTTAGGCATGCCAATTATTC
*
11090 TAACAAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAATCCA-ACATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
11153 GCTTAGGCATG-CAA--ATTC
66 GCTTAGGCATGCCAATTATTC
*
11171 TAAAAAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAAT--AGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
*
11233 GCTTA-GCAAGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
* * *
11253 TAACAAAATACTTAAAGTGTTACACCTATCTTAAAGAGTTAAAGCTATCTAAATCCA-CCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
11317 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
*
11338 TAACAAAAAAACTTAAAGAGTTACACCTA-CTTAAAGAGTTAAAGCTATC--AATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
11400 T-CTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
11421 TAA-AAAATACTTAAAGAGTTACACCTATCTTAAAG-GTTAAAGCTATCTGAATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
*
11484 TCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
11505 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
*
11570 TCCTTA-G---GCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
11588 TAACAAAAATACTTAAAGAGTTACACCTATCTT-AA-AGTTAAAGCTATCT--ATCCAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
11649 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
11671 TAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
11736 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
11757 TAA-AAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAATCCA-TCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
11819 GCTTAGGCATGCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
* *
11840 TAACAAAAATACTT-AA-AGTTACACCTATCTTAAAGAGTTAAAGCTA-ATGAATCAAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
11902 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
11924 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGA-TTAAAGCTATCTGAATCTAGTCATTT
1 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
11988 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
*
12010 TAACAAAATACTT-AA-AGTTACACCTATCTT-AAGAGTTAAAGCTATCGGAATCCAGTCATTTT
1 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
12072 TAACAAAAAT
Statistics
Matches: 6192, Mismatches: 493, Indels: 1126
0.79 0.06 0.14
Matches are distributed among these distances:
68 1 0.00
70 1 0.00
71 7 0.00
72 22 0.00
73 11 0.00
74 29 0.00
75 14 0.00
76 36 0.01
77 157 0.03
78 319 0.05
79 430 0.07
80 443 0.07
81 612 0.10
82 824 0.13
83 629 0.10
84 533 0.09
85 742 0.12
86 729 0.12
87 304 0.05
88 24 0.00
89 19 0.00
90 26 0.00
91 13 0.00
92 21 0.00
93 11 0.00
94 16 0.00
95 11 0.00
96 35 0.01
97 28 0.00
98 17 0.00
99 10 0.00
100 24 0.00
101 25 0.00
102 15 0.00
103 13 0.00
104 7 0.00
105 4 0.00
106 2 0.00
107 3 0.00
108 5 0.00
109 6 0.00
110 6 0.00
111 2 0.00
112 1 0.00
114 5 0.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.33
Consensus pattern (86 bp):
TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
GCTTAGGCATGCCAATTATTC
Found at i:4950 original size:19 final size:19
Alignment explanation
Indices: 4913--4952 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
4903 TAACAAAATA
*
4913 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
4932 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
4951 CT
1 CT
4953 GAATCCACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:5114 original size:19 final size:19
Alignment explanation
Indices: 5077--5116 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
5067 TAAAAAAATA
*
5077 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
5096 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
5115 CT
1 CT
5117 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:5197 original size:17 final size:17
Alignment explanation
Indices: 5163--5197 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
5153 ACAAAAATAC
*
5163 TTAAAGAGTTACACCTA
1 TTAAAGAGTTAAACCTA
*
5180 TTAAAGAGTTAAAGCTA
1 TTAAAGAGTTAAACCTA
5197 T
1 T
5198 CTGAATCCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.31
Consensus pattern (17 bp):
TTAAAGAGTTAAACCTA
Found at i:5525 original size:19 final size:19
Alignment explanation
Indices: 5488--5525 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
5478 AACAAAAATA
*
5488 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
5507 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
5526 ATGAATCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:5612 original size:19 final size:19
Alignment explanation
Indices: 5575--5614 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
5565 AACAAAAATA
*
5575 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
5594 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
5613 CT
1 CT
5615 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:5697 original size:19 final size:19
Alignment explanation
Indices: 5660--5699 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
5650 TAACAAAATA
*
5660 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
5679 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
5698 CT
1 CT
5700 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:5783 original size:19 final size:19
Alignment explanation
Indices: 5746--5785 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
5736 AACAAAAATA
*
5746 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
5765 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
5784 CT
1 CT
5786 GAATCCAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:6030 original size:18 final size:18
Alignment explanation
Indices: 5998--6032 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5988 AAAATACTTA
*
5998 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
6016 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
6033 GAATCCAGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:6115 original size:19 final size:19
Alignment explanation
Indices: 6078--6117 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
6068 CTAAAAAATA
*
6078 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
6097 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
6116 CT
1 CT
6118 ATCCCATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:6279 original size:19 final size:19
Alignment explanation
Indices: 6242--6281 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
6232 AACAAAAATA
*
6242 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
6261 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
6280 CT
1 CT
6282 GAATCCATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:6601 original size:19 final size:19
Alignment explanation
Indices: 6564--6603 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
6554 AACAAAAATA
*
6564 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
6583 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
6602 CT
1 CT
6604 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:6687 original size:19 final size:19
Alignment explanation
Indices: 6651--6687 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6641 AACAAAATAC
*
6651 TTAAAGAGTTACACCTATA
1 TTAAAGAGTTAAACCTATA
*
6670 TTAAAGAGTTAAAGCTAT
1 TTAAAGAGTTAAACCTAT
6688 CTAATCCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (19 bp):
TTAAAGAGTTAAACCTATA
Found at i:6927 original size:19 final size:19
Alignment explanation
Indices: 6890--6929 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
6880 TAACAAAATA
*
6890 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
6909 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
6928 CT
1 CT
6930 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:7020 original size:139 final size:136
Alignment explanation
Indices: 6802--7074 Score: 398
Period size: 140 Copynumber: 2.0 Consensus size: 136
6792 CCAATTATTC
*
6802 TAACAAAAATACTTAAAGAGTTACACCTATCTTAGATTAAAGCTATGAATTCATTTTGCTTAGGC
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAATTAAAGCTATGAATTCATTTTGCTTAGGC
6867 ATGCCAATTATTCTAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTG
66 ATGCCAATTATTCTAACAAAAATACTTAAAGAGTT--A-C-ATC-TAAAGAGTTAAAGCTATCTG
6931 AATCCAGTCTT
126 AATCCAGTCTT
6942 TAACAAAAA-ACTT-AAGAGTT-CACCTATCTTAAAAGTTAAAGCTATGAATCCATCATTTTGCT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTT-AAA-TTAAAGCTATGAAT---TCATTTTGCT
7004 TAGGCA-G-CAATT-TTCTAACAAAAATACTTAAAGAGTTACATCTAAAGAGTTAAAGCTATCTG
61 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACATCTAAAGAGTTAAAGCTATCTG
7066 AATCCAGTC
126 AATCCAGTC
7075 ATTTTGCTTA
Statistics
Matches: 126, Mismatches: 1, Indels: 17
0.88 0.01 0.12
Matches are distributed among these distances:
135 29 0.23
136 3 0.02
137 11 0.09
138 10 0.08
139 25 0.20
140 31 0.25
141 1 0.01
142 16 0.13
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.32
Consensus pattern (136 bp):
TAACAAAAATACTTAAAGAGTTACACCTATCTTAAATTAAAGCTATGAATTCATTTTGCTTAGGC
ATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACATCTAAAGAGTTAAAGCTATCTGAATCC
AGTCTT
Found at i:7235 original size:66 final size:67
Alignment explanation
Indices: 7129--7273 Score: 274
Period size: 66 Copynumber: 2.2 Consensus size: 67
7119 TTACACCTAT
7129 CTTAAAGAGTTAAAGCTATCTGAATCCAACATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACATTTTGCTTAGGCATGCCAATTATTCTAACAAAAA
7193 TA
66 TA
*
7195 CTTAAAGAGTTAAAGCTATCTGAATCCATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACATTTTGCTTAGGCATGCCAATTATTCTAACAAAAA
7260 TA
66 TA
7262 CTTAAAGAGTTA
1 CTTAAAGAGTTA
7274 CCCTATCTTA
Statistics
Matches: 77, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
66 59 0.77
67 18 0.23
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (67 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAACATTTTGCTTAGGCATGCCAATTATTCTAACAAAAA
TA
Found at i:7248 original size:150 final size:152
Alignment explanation
Indices: 7046--7366 Score: 553
Period size: 151 Copynumber: 2.1 Consensus size: 152
7036 GAGTTACATC
7046 TAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAT
1 TAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAT
7111 ACTT-AA-AGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAA-CATTTTGCTTAGGCA
66 ACTTAAAGAGTTAC-CCTATCTTAAAGAGTTAAAGCTA--TGAATCCAATCATTTTGCTTAGGCA
7173 TGCCAATTATTCTAAC-AAAATACT
128 TGCCAATTATTCTAACAAAAATACT
7197 TAAAGAGTTAAAGCTATCTGAATCCA-TCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAT
1 TAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAT
7261 ACTTAAAGAGTTACCCTATCTTAAAGAGTTAAAGCTATGAATCCAATCATTTTGCTTAGGCATGC
66 ACTTAAAGAGTTACCCTATCTTAAAGAGTTAAAGCTATGAATCCAATCATTTTGCTTAGGCATGC
*
7326 CAATTTTTCTAACAAAAATACT
131 CAATTATTCTAACAAAAATACT
* *
7348 TAAAGAGTTACACCTATCT
1 TAAAGAGTTAAAGCTATCT
7367 TAAAGAGTTA
Statistics
Matches: 163, Mismatches: 3, Indels: 8
0.94 0.02 0.05
Matches are distributed among these distances:
149 9 0.06
150 72 0.44
151 76 0.47
152 6 0.04
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (152 bp):
TAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAT
ACTTAAAGAGTTACCCTATCTTAAAGAGTTAAAGCTATGAATCCAATCATTTTGCTTAGGCATGC
CAATTATTCTAACAAAAATACT
Found at i:7383 original size:19 final size:19
Alignment explanation
Indices: 7346--7383 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7336 AACAAAAATA
*
7346 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
7365 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
7384 ATGAATCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:7468 original size:18 final size:18
Alignment explanation
Indices: 7436--7470 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7426 AAAATACTTA
*
7436 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
7454 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
7471 GAATCCATCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:7569 original size:80 final size:86
Alignment explanation
Indices: 7485--7714 Score: 361
Period size: 84 Copynumber: 2.8 Consensus size: 86
7475 CCATCATTTT
* *
7485 TAACAAAAAAACTTAAA-A-ATACACCTATCTTAAA-AGTTAAAGCTA-TGAAT-CAGTCATTTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTACTGAATCCAGTCATTTT
7545 GCTTAGGCA-GCCAATTATTC
66 GCTTAGGCATGCCAATTATTC
7565 TAACAAAAATACTTAAAGAGTTACA--TATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA-CTGAATCCAGTCATTT
7628 TGCTTAGGCATGCCAATTATTC
65 TGCTTAGGCATGCCAATTATTC
7650 TAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA-CTGAATCCAGTCATTT
7714 T
65 T
7715 TAACAAAAAA
Statistics
Matches: 139, Mismatches: 2, Indels: 12
0.91 0.01 0.08
Matches are distributed among these distances:
80 25 0.18
81 12 0.09
82 4 0.03
83 5 0.04
84 39 0.28
85 15 0.11
86 39 0.28
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (86 bp):
TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTACTGAATCCAGTCATTTT
GCTTAGGCATGCCAATTATTC
Found at i:7619 original size:143 final size:150
Alignment explanation
Indices: 7330--7628 Score: 472
Period size: 144 Copynumber: 2.0 Consensus size: 150
7320 GCATGCCAAT
* *
7330 TTTTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAAT
1 TTTTCTAACAAAAAAACTTAAAGAGATACACCTATCTTAAAGAGTTAAAGC-ATATGAATCCAAT
7395 CATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAGAGT
65 CATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACA-CTATCTTAAGAGT
7460 TAAAGCTATCTGAATCCA-TCA
129 TAAAGCTATCTGAATCCAGTCA
*
7481 TTTT-TAACAAAAAAACTTAAA-A-ATACACCTATCTTAAA-AGTTAAAGC-TATGAAT-CAGTC
1 TTTTCTAACAAAAAAACTTAAAGAGATACACCTATCTTAAAGAGTTAAAGCATATGAATCCAATC
7540 ATTTTGCTTAGGCA-GCCAATTATTCTAACAAAAATACTTAAAGAGTTACA-TATCTTAAAGAGT
66 ATTTTGCTTAGGCATGCCAATTATTCTAA-AAAAATACTTAAAGAGTTACACTATCTT-AAGAGT
7603 TAAAGCTATCTGAATCCAGTCA
129 TAAAGCTATCTGAATCCAGTCA
7625 TTTT
1 TTTT
7629 GCTTAGGCAT
Statistics
Matches: 142, Mismatches: 3, Indels: 13
0.90 0.02 0.08
Matches are distributed among these distances:
142 6 0.04
143 38 0.27
144 46 0.32
145 7 0.05
147 9 0.06
148 15 0.11
149 1 0.01
150 16 0.11
151 4 0.03
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.33
Consensus pattern (150 bp):
TTTTCTAACAAAAAAACTTAAAGAGATACACCTATCTTAAAGAGTTAAAGCATATGAATCCAATC
ATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACTATCTTAAGAGTTA
AAGCTATCTGAATCCAGTCA
Found at i:7697 original size:19 final size:19
Alignment explanation
Indices: 7660--7699 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7650 TAACAAAATA
*
7660 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
7679 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
7698 CT
1 CT
7700 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:7741 original size:64 final size:62
Alignment explanation
Indices: 7650--7775 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
7640 CCAATTATTC
* *
7650 TAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
1 TAACAAAAAACTTAAAGAGTTACACCTATCTT-AA-AGTTAAAGCTATATGAATCCA-TCATTTT
7715 TAACAAAAAACTT-AAGAGTTACACCTATCTTAAAGTTAAAGCTATATGAATCCATCATTTT
1 TAACAAAAAACTTAAAGAGTTACACCTATCTTAAAGTTAAAGCTATATGAATCCATCATTTT
7776 GCTTAGGCAA
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
61 7 0.12
62 20 0.34
63 2 0.03
64 18 0.31
65 12 0.20
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.33
Consensus pattern (62 bp):
TAACAAAAAACTTAAAGAGTTACACCTATCTTAAAGTTAAAGCTATATGAATCCATCATTTT
Found at i:7833 original size:146 final size:150
Alignment explanation
Indices: 7565--7860 Score: 514
Period size: 146 Copynumber: 2.0 Consensus size: 150
7555 CCAATTATTC
*
7565 TAACAAAAATACTTAAAGAGTTACATATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTG
1 TAACAAAAATACTTAAAGAGTTACATATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTG
*
7630 CTTAGGCATGCCAATTATTCTAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGC
66 CTTAGGCAAGCCAATTATTCTAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGC
7695 TATCTGAATCCAGTCATTTT
131 TATCTGAATCCAGTCATTTT
7715 TAACAAAAA-ACTT-AAGAGTTACACCTATCTT-AA-AGTTAAAGCTATATGAATCCA-TCATTT
1 TAACAAAAATACTTAAAGAGTTACA--TATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTT
7775 TGCTTAGGCAAG-CAATTATTCTAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAA
64 TGCTTAGGCAAGCCAATTATTCTAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAA
7839 GCTATCTGAATCCAGTCATTTT
129 GCTATCTGAATCCAGTCATTTT
7861 GCTTAGGCAT
Statistics
Matches: 142, Mismatches: 2, Indels: 8
0.93 0.01 0.05
Matches are distributed among these distances:
146 74 0.52
147 17 0.12
148 30 0.21
149 6 0.04
150 15 0.11
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.32
Consensus pattern (150 bp):
TAACAAAAATACTTAAAGAGTTACATATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTG
CTTAGGCAAGCCAATTATTCTAACAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGC
TATCTGAATCCAGTCATTTT
Found at i:7843 original size:19 final size:19
Alignment explanation
Indices: 7806--7845 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7796 TAACAAAATA
*
7806 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
7825 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
7844 CT
1 CT
7846 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:7929 original size:19 final size:19
Alignment explanation
Indices: 7892--7931 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7882 TAACAAAATA
*
7892 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
7911 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
7930 CT
1 CT
7932 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:8323 original size:19 final size:18
Alignment explanation
Indices: 8285--8323 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
8275 TCTAAAAATA
*
8285 CTTAAAGAGTTACACTAT
1 CTTAAAGAGTTAAACTAT
8303 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAA-CTAT
8322 CT
1 CT
8324 GAATCCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGAGTTAAACTAT
Found at i:8477 original size:18 final size:18
Alignment explanation
Indices: 8442--8479 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8432 CTACAAAAAA
*
8442 CTTAAGAGTTACACCTAT
1 CTTAAGAGTTAAACCTAT
*
8460 CTTAAGAGTTAAAGCTAT
1 CTTAAGAGTTAAACCTAT
8478 CT
1 CT
8480 GAATCCATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (18 bp):
CTTAAGAGTTAAACCTAT
Found at i:8641 original size:18 final size:18
Alignment explanation
Indices: 8607--8643 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8597 CAAAAATACT
*
8607 TAAAGAGTTACACCTATC
1 TAAAGAGTTAAACCTATC
*
8625 TAAAGAGTTAAAGCTATC
1 TAAAGAGTTAAACCTATC
8643 T
1 T
8644 GAATCCAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (18 bp):
TAAAGAGTTAAACCTATC
Found at i:9051 original size:18 final size:18
Alignment explanation
Indices: 9019--9053 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9009 AAAATACTTA
*
9019 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
9037 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
9054 GAATCAGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:9136 original size:18 final size:18
Alignment explanation
Indices: 9104--9138 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9094 AAAATACTTA
*
9104 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
9122 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
9139 GAATCAGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:9260 original size:63 final size:62
Alignment explanation
Indices: 9172--9296 Score: 189
Period size: 63 Copynumber: 2.0 Consensus size: 62
9162 CCAATTATTC
* * *
9172 TAACAAAATACTTAAAGGTTACACCTATCTTAAGAGTTAAAGC-TATGAATCCAGTCATTTTT
1 TAACAAAAAACTTAAAAGTTACACCTATCTTAAAAGTTAAAGCATATGAATCCA-TCATTTTT
9234 TAACAAAAAACTTAAATAGTTACACCTATCTTAAAAGTTAAAGCTATATGAATCCATCATTTT
1 TAACAAAAAACTTAAA-AGTTACACCTATCTTAAAAGTTAAAGC-ATATGAATCCATCATTTT
9297 GCTTAGGCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
62 15 0.26
63 25 0.44
64 7 0.12
65 10 0.18
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.34
Consensus pattern (62 bp):
TAACAAAAAACTTAAAAGTTACACCTATCTTAAAAGTTAAAGCATATGAATCCATCATTTTT
Found at i:9365 original size:19 final size:19
Alignment explanation
Indices: 9328--9367 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9318 AACAAAAATA
*
9328 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
9347 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
9366 CT
1 CT
9368 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:9452 original size:19 final size:19
Alignment explanation
Indices: 9415--9454 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9405 AACAAAAATA
*
9415 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
9434 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
9453 CT
1 CT
9455 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:9691 original size:19 final size:18
Alignment explanation
Indices: 9653--9691 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
9643 TAACAAAAAA
*
9653 CTTAAAGAGTTACACTAT
1 CTTAAAGAGTTAAACTAT
9671 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAA-CTAT
9690 CT
1 CT
9692 GAATCCATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGAGTTAAACTAT
Found at i:9771 original size:18 final size:19
Alignment explanation
Indices: 9735--9773 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
9725 CTAAAAAATA
*
9735 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
9754 CTTAAAG-GTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
9772 CT
1 CT
9774 AATCCAGTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:9854 original size:19 final size:19
Alignment explanation
Indices: 9817--9856 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9807 CTAACAAAAA
*
9817 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
9836 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
9855 CT
1 CT
9857 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:9987 original size:58 final size:57
Alignment explanation
Indices: 9897--10009 Score: 183
Period size: 58 Copynumber: 2.0 Consensus size: 57
9887 TATTCTAACA
*
9897 AAAAACTTAAAGTTACACCTATCTTAAGAGTT-AAGCTATCGGAATCCAGTCATTTTG
1 AAAAACTTAAAGTTACACCTATCTTAAAAGTTAAAGCTATCGGAATCCA-TCATTTTG
*
9954 AAAAACTTAAAAGTTACACCTATCTTAAAAGTTAAAGCTATCTGAATCCATCATTT
1 AAAAACTT-AAAGTTACACCTATCTTAAAAGTTAAAGCTATCGGAATCCATCATTT
10010 GCTTAGGCAT
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
57 8 0.15
58 29 0.56
59 15 0.29
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.32
Consensus pattern (57 bp):
AAAAACTTAAAGTTACACCTATCTTAAAAGTTAAAGCTATCGGAATCCATCATTTTG
Found at i:9994 original size:18 final size:18
Alignment explanation
Indices: 9959--9996 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
9949 TTTTGAAAAA
*
9959 CTTAAAAGTTACACCTAT
1 CTTAAAAGTTAAACCTAT
*
9977 CTTAAAAGTTAAAGCTAT
1 CTTAAAAGTTAAACCTAT
9995 CT
1 CT
9997 GAATCCATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (18 bp):
CTTAAAAGTTAAACCTAT
Found at i:10128 original size:138 final size:138
Alignment explanation
Indices: 9812--10091 Score: 363
Period size: 138 Copynumber: 2.0 Consensus size: 138
9802 ATTTTCTAAC
* * * *
9812 AAAAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTGCTTAG
1 AAAAACTGAAA-AGTTACACCTAAC-TAAAAACTTAAAGCTATCTGAATCCAGTCATTTGCTTAG
9877 GCATGCCAATTATTCTAACAAAAAACTTAAAGTTACACCTATCTTAAGAGTTAAGCTATCGGAAT
64 GCAT-CCAATTATTCTAACAAAAAACTTAAAGTTA-ACCTATCTTAAGAGTTAAGCTATCGGAAT
9942 CCAGTCATTTTG
127 CCAGTCATTTTG
* * * *
9954 AAAAACTTAAAAGTTACACCTATCTTAAAAGTTAAAGCTATCTGAATCCA-TCATTTGCTTAGGC
1 AAAAACTGAAAAGTTACACCTAACTAAAAACTTAAAGCTATCTGAATCCAGTCATTTGCTTAGGC
*
10018 AT-CAATTATTCTAACAAAAATACTTAAAGAGTT-A-C-ATCTTAAAGAGTTAAAGCTATCTGAA
66 ATCCAATTATTCTAACAAAAA-ACTT-AA-AGTTAACCTATCTT-AAGAGTT-AAGCTATCGGAA
10079 TCCAGTCATTTTG
126 TCCAGTCATTTTG
10092 CTTAGGCATG
Statistics
Matches: 130, Mismatches: 3, Indels: 14
0.88 0.02 0.10
Matches are distributed among these distances:
136 5 0.04
137 26 0.20
138 29 0.22
139 18 0.14
140 28 0.22
141 13 0.10
142 11 0.08
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (138 bp):
AAAAACTGAAAAGTTACACCTAACTAAAAACTTAAAGCTATCTGAATCCAGTCATTTGCTTAGGC
ATCCAATTATTCTAACAAAAAACTTAAAGTTAACCTATCTTAAGAGTTAAGCTATCGGAATCCAG
TCATTTTG
Found at i:10480 original size:19 final size:19
Alignment explanation
Indices: 10443--10482 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10433 TAAAAAAATA
*
10443 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
* *
10462 CTTAAAGTGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
10481 CT
1 CT
10483 AATCCAGTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:10562 original size:19 final size:19
Alignment explanation
Indices: 10528--10564 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10518 TAACAAAAAC
*
10528 AAAGAGTTACACCTATCTT
1 AAAGAGTTAAACCTATCTT
*
10547 AAAGAGTTAAAGCTATCT
1 AAAGAGTTAAACCTATCT
10565 GAATCCAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (19 bp):
AAAGAGTTAAACCTATCTT
Found at i:10648 original size:19 final size:19
Alignment explanation
Indices: 10611--10650 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
10601 AACAAAAATA
*
10611 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
10630 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
10649 CT
1 CT
10651 GAATCCAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:10973 original size:19 final size:19
Alignment explanation
Indices: 10936--10973 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
10926 AACAAAAATA
*
10936 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
10955 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
10974 ACGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:11138 original size:19 final size:18
Alignment explanation
Indices: 11100--11138 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
11090 TAACAAAATA
*
11100 CTTAAAGAGTTACACTAT
1 CTTAAAGAGTTAAACTAT
11118 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAA-CTAT
11137 CT
1 CT
11139 GAATCCAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGAGTTAAACTAT
Found at i:11219 original size:19 final size:18
Alignment explanation
Indices: 11181--11219 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
11171 TAAAAAAATA
*
11181 CTTAAAGAGTTACACTAT
1 CTTAAAGAGTTAAACTAT
11199 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAA-CTAT
11218 CT
1 CT
11220 GAATAGTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGAGTTAAACTAT
Found at i:11300 original size:19 final size:19
Alignment explanation
Indices: 11263--11302 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
11253 TAACAAAATA
* *
11263 CTTAAAGTGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
11282 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
11301 CT
1 CT
11303 AAATCCACCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:11466 original size:18 final size:19
Alignment explanation
Indices: 11430--11468 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
11420 CTAAAAAATA
*
11430 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
11449 CTTAAAG-GTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
11467 CT
1 CT
11469 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:11474 original size:83 final size:86
Alignment explanation
Indices: 10899--12071 Score: 1788
Period size: 83 Copynumber: 14.1 Consensus size: 86
10889 TATGAATCCA
10899 TCATTTTGCTTAGGCATGCC--TTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAG
1 TCATTTTGCTTAGGCATGCCAATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAG
10962 AGTTAAAGCTATAC-GAATCCAG
65 AGTTAAAGCTAT-CTGAATCCAG
* * *
10984 TCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA-AC-TAAAGAGTTACACCTATATTTAAGA
1 TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
**
11047 GTTAAAGCTATCTGAATAGAG
66 GTTAAAGCTATCTGAATCCAG
*
11068 TCATTTT-C-TAGGCAT---AATT-TTCTAACAAAATACTTAAAGAGTTACA-CTATCTTAAAGA
1 TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
11126 GTTAAAGCTATCTGAATCCA-
66 GTTAAAGCTATCTGAATCCAG
*
11146 ACATTTTGCTTAGGCATG-CAA--ATTCTAAAAAAATACTTAAAGAGTTACA-CTATCTTAAAGA
1 TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
11207 GTTAAAGCTATCTGAAT--AG
66 GTTAAAGCTATCTGAATCCAG
* * *
11226 TCATTTTGCTTA-GCAAGCCAATTATTCTAACAAAATACTTAAAGTGTTACACCTATCTTAAAGA
1 TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
*
11290 GTTAAAGCTATCTAAATCCA-
66 GTTAAAGCTATCTGAATCCAG
* *
11310 CCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAAACTTAAAGAGTTACACCTA-CTTAAAG
1 TCATTTTGCTTAGGCATGCCAATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAG
11374 AGTTAAAGCTATC--AATCCAG
65 AGTTAAAGCTATCTGAATCCAG
11394 TCATTTT-CTTAGGCATGCCAATTATTCT-AAAAAATACTTAAAGAGTTACACCTATCTTAAAG-
1 TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
11456 GTTAAAGCTATCTGAATCCAG
66 GTTAAAGCTATCTGAATCCAG
*
11477 TCATTTTTCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAG
1 TCATTTTGCTTAGGCATGCCAATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAG
11542 AGTTAAAGCTATCTGAATCCAG
65 AGTTAAAGCTATCTGAATCCAG
*
11564 TCATTTTCCTTA-G---GCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTT-AA-
1 TCATTTTGCTTAGGCATGCCAATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAG
11623 AGTTAAAGCTATCT--ATCCAG
65 AGTTAAAGCTATCTGAATCCAG
11643 TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
1 TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
11708 GTTAAAGCTATCTGAATCCAG
66 GTTAAAGCTATCTGAATCCAG
11729 TCATTTTGCTTAGGCATGCCAATTATTCT-AAAAAATACTTAAAGAGTTACA-CTATCTTAAAGA
1 TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
11792 GTTAAAGCTATCTGAATCCA-
66 GTTAAAGCTATCTGAATCCAG
11812 TCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTT-AA-AGTTACACCTATCTTAAAG
1 TCATTTTGCTTAGGCATGCCAATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAG
* *
11875 AGTTAAAGCTA-ATGAATCAAG
65 AGTTAAAGCTATCTGAATCCAG
11896 TCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAG
1 TCATTTTGCTTAGGCATGCCAATTATTCTAA-AAAAATACTTAAAGAGTTACACCTATCTTAAAG
*
11961 A-TTAAAGCTATCTGAATCTAG
65 AGTTAAAGCTATCTGAATCCAG
*
11982 TCATTTTGCTTAGGCATGCCAATTATTCTAACAAAATACTT-AA-AGTTACACCTATCTT-AAGA
1 TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
*
12044 GTTAAAGCTATCGGAATCCAG
66 GTTAAAGCTATCTGAATCCAG
12065 TCATTTT
1 TCATTTT
12072 TAACAAAAAT
Statistics
Matches: 1013, Mismatches: 32, Indels: 88
0.89 0.03 0.08
Matches are distributed among these distances:
78 17 0.02
79 57 0.06
80 34 0.03
81 105 0.10
82 78 0.08
83 214 0.21
84 200 0.20
85 113 0.11
86 154 0.15
87 41 0.04
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.33
Consensus pattern (86 bp):
TCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGA
GTTAAAGCTATCTGAATCCAG
Found at i:11553 original size:19 final size:19
Alignment explanation
Indices: 11516--11555 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
11506 AACAAAAATA
*
11516 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
11535 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
11554 CT
1 CT
11556 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:11718 original size:19 final size:19
Alignment explanation
Indices: 11681--11720 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
11671 TAAAAAAATA
*
11681 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
11700 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
11719 CT
1 CT
11721 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:11804 original size:19 final size:18
Alignment explanation
Indices: 11766--11804 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
11756 CTAAAAAATA
*
11766 CTTAAAGAGTTACACTAT
1 CTTAAAGAGTTAAACTAT
11784 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAA-CTAT
11803 CT
1 CT
11805 GAATCCATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGAGTTAAACTAT
Found at i:11973 original size:18 final size:19
Alignment explanation
Indices: 11935--11973 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
11925 AACAAAAATA
*
11935 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
11954 CTTAAAGA-TTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
11972 CT
1 CT
11974 GAATCTAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:12116 original size:19 final size:19
Alignment explanation
Indices: 12081--12118 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
12071 TTAACAAAAA
*
12081 TAAAGAGTTACACCTATCT
1 TAAAGAGTTAAACCTATCT
*
12100 TAAAGAGTTAAAGCTATCT
1 TAAAGAGTTAAACCTATCT
12119 GAATAGTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
TAAAGAGTTAAACCTATCT
Found at i:12508 original size:84 final size:84
Alignment explanation
Indices: 12081--12577 Score: 697
Period size: 84 Copynumber: 6.1 Consensus size: 84
12071 TTAACAAAAA
12081 TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT-AGTCATTTTGCTTAGGCATGCC
1 TAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCAGTCATTTTGCTTAGGCATGCC
12145 -ATT-TTCTAACAAAAATACT
65 AATTATTCTAACAAAAA-ACT
*
12164 TAAAGA-TTACACCTATCTTAAGAGTT-AAGCTA--TGAATCAATCATTTTGCTTAGGCATGCCA
1 TAAAGAGTTACACCTATCTTAAGAGTTAAAGCTATCTGAATCAGTCATTTTGCTTAGGCATGCCA
*
12225 ATTATTCTAA-AAAATA-T
66 ATTATTCTAACAAAAAACT
*
12242 TAAAGAGTTACACCTATCTTAAGAGTTAAAGCTATATGAATCA-TCATTTTGCTTAGGCATGCCA
1 TAAAGAGTTACACCTATCTTAAGAGTTAAAGCTATCTGAATCAGTCATTTTGCTTAGGCATGCCA
12306 ATTATTCTAACAAAAATACT
66 ATTATTCTAACAAAAA-ACT
* * * *
12326 TAAAGAGTTACACCTATCTTAA-AATTTAAG-T-TATGAATC--CCATTTT-CTTAGGCATGCCA
1 TAAAGAGTTACACCTATCTTAAGAGTTAAAGCTATCTGAATCAGTCATTTTGCTTAGGCATGCCA
*
12385 ATTATTCTAACAAAATACT
66 ATTATTCTAACAAAAAACT
* *
12404 TAAAGAGTTACACCTATCTTATATAGTTAAAGCTATCT-AATCCAGCCATTTTGCTTAGGCATGC
1 TAAAGAGTTACACCTATCTTA-AGAGTTAAAGCTATCTGAAT-CAGTCATTTTGCTTAGGCATGC
12468 CAATTATTCTAACAAAAAAC-
64 CAATTATTCTAACAAAAAACT
* *
12488 TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCAGTCATTTTGCTTAGGCAAGCA
1 TAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTATCTGAATCAGTCATTTTGCTTAGGCATGCC
*
12553 AATTATTCTAACAAAATACT
65 AATTATTCTAACAAAAAACT
12573 TAAAG
1 TAAAG
12578 TACCTATCTT
Statistics
Matches: 377, Mismatches: 16, Indels: 40
0.87 0.04 0.09
Matches are distributed among these distances:
78 36 0.10
79 71 0.19
80 31 0.08
81 56 0.15
82 28 0.07
83 13 0.03
84 103 0.27
85 39 0.10
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (84 bp):
TAAAGAGTTACACCTATCTTAAGAGTTAAAGCTATCTGAATCAGTCATTTTGCTTAGGCATGCCA
ATTATTCTAACAAAAAACT
Found at i:12523 original size:19 final size:19
Alignment explanation
Indices: 12488--12525 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
12478 AACAAAAAAC
*
12488 TAAAGAGTTACACCTATCT
1 TAAAGAGTTAAACCTATCT
*
12507 TAAAGAGTTAAAGCTATCT
1 TAAAGAGTTAAACCTATCT
12526 GAATCAGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
TAAAGAGTTAAACCTATCT
Found at i:12621 original size:61 final size:65
Alignment explanation
Indices: 12520--12654 Score: 199
Period size: 61 Copynumber: 2.1 Consensus size: 65
12510 AGAGTTAAAG
*
12520 CTATCTGAATCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAAC-AAAATACTTAA-AG-TA-C
1 CTATCTTAATCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAAATACTTAAGAGTTACC
* *
12581 CTATCTTAATCCAGTCATTTTGCTT-GGCATGCCAATTATTCTAACAAAAATACTTAAGAGTTAC
1 CTATCTTAAT-CAGTCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAAATACTTAAGAGTTAC
12645 C
65 C
12646 CTATCTTAA
1 CTATCTTAA
12655 AGCGTTAAAG
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
61 27 0.41
62 25 0.38
63 2 0.03
64 2 0.03
65 10 0.15
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (65 bp):
CTATCTTAATCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAAATACTTAAGAGTTACC
Found at i:13022 original size:84 final size:87
Alignment explanation
Indices: 12581--15561 Score: 4022
Period size: 83 Copynumber: 35.7 Consensus size: 87
12571 CTTAAAGTAC
*
12581 CTATCTTAATCCAGTCATTTTGCTT-GGCATGCCAATTATTCTAACAAAAATACTT-AAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
*
12644 C-CCTATCTTAAAGCGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
* *
12665 CTATCTGAATCCAATCATTTT-CTTAGGCATG-CAACTATTCTAA-AAAAA-AC-TAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
12725 CACCTAT-TT-AAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
*
12745 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCC--TTTTTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
12808 CACCTATCTTAAAGAGTT--AG
66 CACCTATCTTAAAGAGTTAAAG
* *
12828 CTATCTAAATCCAATCA-TTTGCTTAGGCATGCCAATTATTCT-AC-AAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
12890 CA-C-ATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
*
12910 CTATCTGAATCCAGTCA-TTTGCTTAGGCATGCCAATTATTCTAACAAAAAAACTTAAAGAGTT-
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
*
12973 TA-CTATCTT-AAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
* *
12993 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATT-TTCTAACCAAAATAGTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13057 CA-CTATCTT-AA-AGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
13076 CTA-CTGAATCCAGTCATTTTGCTTAGGCATGCCAATT-TTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13139 CACCTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
* *
13161 CTATCTAAATCCAGTCA-TTTGCTTAGGCAT-CCAATTTTTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13224 CACCTATCTT-AAGAGTT-AAG
66 CACCTATCTTAAAGAGTTAAAG
* *
13244 CTATATGAATCCAAT-ATTTTGCTTAGGCATG--AATTATTCT-A-AAAAA-ACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13303 CACCTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
13325 CTA--TGAATCCAG--A-TTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13385 CA-CTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
*
13406 CTAT-TGAATCCAGTCATTTTGCTTAGGCA----AATTATTCTAACAAAAAAAACTTAAAGAGTT
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAAATACTTAAAGAGTT
* *
13466 CCTCC--TCTTAAAGAGTTAAAG
65 ACACCTATCTTAAAGAGTTAAAG
* * *
13487 CTATCTGAATCTAGTCATTTT-CTTAGGC-TGACAATTATTCTAACAAAAAAACTT-AAGAGTT-
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13548 -A-C-ATCTTAAAGAGTT-AAG
66 CACCTATCTTAAAGAGTTAAAG
13566 CTAT-TGAAT-C---CATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAATACTT-AAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13624 CACCTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
** *
13646 CTATCTGAATCCAACCATTTTCCTTA-GCAAT---AATTATTCTAACAAAAATACTT-AAGAGTT
1 CTATCTGAATCCAGTCATTTTGCTTAGGC-ATGCCAATTATTCTAACAAAAATACTTAAAGAGTT
*
13706 ACACCTATCTTAAATAGTTAAAG
65 ACACCTATCTTAAAGAGTTAAAG
* * * *
13729 CTATCT-AATCCAG-CATTTTGCTTAGGAATTCCAATTATTCAAACAAAAAAACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13792 CACCTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
*
13814 CTATCTGAATCCAGTCATTTTGCTTAGGC---CAAATTATTCTAAC-AAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13875 CACCTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
*
13897 CTATCTGAATCCAGTCATTTTGCTTAGGCTTGCCAATTATTCTAACAAAAATACTTAAAGAGTT-
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
13961 -A-CTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
* * * * *
13981 CTATCTAAATCCACTCAATTTACTTAGGCATGCCAATTATTCTAACAAAAATGCTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
14046 CACCTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
* * *
14068 CTATCTAAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAAACTT--AGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
14131 CACCATAT-TTAAA-AGTTAAAG
66 CACC-TATCTTAAAGAGTTAAAG
* *
14152 ATATCTGAATCCA-TCATTTTGCTTAGGCATGCCAATTTTTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
*
14216 CACCTATCTTAAATGAGTTAATG
66 CACCTATCTTAAA-GAGTTAAAG
* * *
14239 CTATATGAATCCAATCATTTTGCTTAGGCATG-CAATTAATCTAACAAAAATA-TTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
14302 CACCTATCTT-AAGAGTTAAATG
66 CACCTATCTTAAAGAGTTAAA-G
* * * *
14324 CTATATGAATCTAATCATTTTGCTTAGGCATGCCAAGTATTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
* *
14389 CA-TTATCTTAAAGACTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
** * *
14410 CTA--TGAATCCAACCATTTTTCTTAGGCATGCCAATTATTCTAACAAAAATAC--ATAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
*
14471 CA-CTATCTTAAA-TGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
* *
14491 CTA-CTGAATCCAGTCATTTTTCTTAGGCATGCCAATTTTTCTAAC-AAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
14554 CACCTAT-TT-AAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
* *
14574 CTATATGAAT-CAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
* *
14638 CACCTATCTTAACGAGTTAATG
66 CACCTATCTTAAAGAGTTAAAG
* * *
14660 CTA--TGAATCTAATCA-TTTGCTTAGGCATGCCAAGTATTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
14722 CACCTATCTT-AAGAGTT-AAG
66 CACCTATCTTAAAGAGTTAAAG
**
14742 CTATCTGAAT-CAACCATTTT-CTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
14805 CACCT-TCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
*
14826 CTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
14890 CACCTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
*
14912 CTATCTG-----A-TCATTTTCCTTAGGCA-GCCAATTATTCTAACAAAAATAC-TAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
14969 CACCTATCTTAAAGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
*
14991 CTAACTGAATCCAGTCATTTT-CTTA-G---GCCAA-T-TT-TAAC-AAAATACTTAAAGAGTT-
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
*
15046 -A-CTATCTTAATGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
* * * *
15066 CTATATGAATCCAGAT-ATTTTTCTTAGGTATGTC-A--A-TCTAACAAAAATACTTAAAGAGTT
1 CTATCTGAATCCAG-TCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTT
*
15126 ACACCTATCTTAATGAGTTAAAG
65 ACACCTATCTTAAAGAGTTAAAG
* * * * * *
15149 TTATATGAATCCAATCATTTTGCTTAGGCATTCAAATTATTCTAACAAAATATACTTAAAGTG-T
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA-ATACTTAAAGAGTT
15213 ACACCTATCTTAAAGAGTTAAAG
65 ACACCTATCTTAAAGAGTTAAAG
* **
15236 CTATCTGAATCCAGTAATTTTGCTTAGGCATGAAAATTATTCTAACAAAAATACTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
*
15301 CACCTATCTTAAAGAGTTAATG
66 CACCTATCTTAAAGAGTTAAAG
* * * *
15323 CTATCTGAATCCATTAATTTTGCTTAGGCATGCAAATTATTCTAACAAAAATAGTTAAAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
*
15388 CACCTATCTTAATGAGTTAAAG
66 CACCTATCTTAAAGAGTTAAAG
* *
15410 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAATCCTTAAACAGTT
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAAATACTTAAAGAGTT
* *
15475 ACTCCTATCTTAAAGCGTTAAAG
65 ACACCTATCTTAAAGAGTTAAAG
* * * * * *
15498 CTATCTGAATCCAGTTATTTTACTGAGGCAAGACAATTATTCTAACAAAAAAACTT-AAGAGTTA
1 CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
15562 AAGCTATTGA
Statistics
Matches: 2617, Mismatches: 150, Indels: 258
0.87 0.05 0.09
Matches are distributed among these distances:
74 6 0.00
75 57 0.02
76 21 0.01
77 23 0.01
78 21 0.01
79 121 0.05
80 125 0.05
81 141 0.05
82 314 0.12
83 476 0.18
84 417 0.16
85 238 0.09
86 162 0.06
87 390 0.15
88 105 0.04
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (87 bp):
CTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTA
CACCTATCTTAAAGAGTTAAAG
Found at i:13164 original size:19 final size:19
Alignment explanation
Indices: 13127--13166 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
13117 AACAAAAATA
*
13127 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
13146 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
13165 CT
1 CT
13167 AAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:13328 original size:19 final size:19
Alignment explanation
Indices: 13291--13328 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
13281 TCTAAAAAAA
*
13291 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
13310 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
13329 GAATCCAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:13817 original size:19 final size:19
Alignment explanation
Indices: 13780--13819 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
13770 AACAAAAAAA
*
13780 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
13799 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
13818 CT
1 CT
13820 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:13900 original size:19 final size:19
Alignment explanation
Indices: 13863--13902 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
13853 TAACAAAATA
*
13863 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
13882 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
13901 CT
1 CT
13903 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:14071 original size:19 final size:19
Alignment explanation
Indices: 14034--14073 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
14024 AACAAAAATG
*
14034 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
14053 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
14072 CT
1 CT
14074 AAATCTAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:14915 original size:19 final size:19
Alignment explanation
Indices: 14878--14917 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
14868 TAACAAAATA
*
14878 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
14897 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
14916 CT
1 CT
14918 GATCATTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:15413 original size:19 final size:19
Alignment explanation
Indices: 15377--15415 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
15367 ACAAAAATAG
*
15377 TTAAAGAGTTACACCTATC
1 TTAAAGAGTTAAACCTATC
* *
15396 TTAATGAGTTAAAGCTATC
1 TTAAAGAGTTAAACCTATC
15415 T
1 T
15416 GAATCCAGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TTAAAGAGTTAAACCTATC
Found at i:15574 original size:66 final size:68
Alignment explanation
Indices: 15483--15637 Score: 181
Period size: 66 Copynumber: 2.3 Consensus size: 68
15473 TTACTCCTAT
* * *
15483 CTTAAAGCGTTAAAGCTATCTGAATCCAGTTATTTTAC-TGAGGCAAGACAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTACTTG-GGCAAGACAATTATTCTAACAAA
15547 AAAA
65 AAAA
* ** * *
15551 CTT-AAGAGTTAAAGCTAT-TGAATCCAATCATTTTGCTTGGGCTTGTCAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTACTTGGGCAAGACAATTATTCTAACAAAA
*
15614 ATA
66 AAA
* *
15617 CTTAAAGAGTTACACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
15638 TAAAGAGTTA
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
66 40 0.55
67 29 0.40
68 4 0.05
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.34
Consensus pattern (68 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTACTTGGGCAAGACAATTATTCTAACAAAA
AAA
Found at i:15654 original size:19 final size:19
Alignment explanation
Indices: 15617--15656 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
15607 AACAAAAATA
*
15617 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
15636 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
15655 CT
1 CT
15657 AAATCCAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:15695 original size:87 final size:87
Alignment explanation
Indices: 15554--18134 Score: 3490
Period size: 87 Copynumber: 29.9 Consensus size: 87
15544 AAAAAAACTT
* * * * *
15554 AAGAGTTAAAGCTAT-TGAATCCAATCATTTTGCTTGGGCTTGTCAATTTTTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
15618 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * *
15640 AAGAGTTAAAGCTATCTAAATCCAGTTAATTTCCTTAGGCATGCCAATTAATCTAACAAAAATAA
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
15705 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * *
15727 AAGAGTTAAAGCTATCTGAATCCAATCATATTGCCTAGGCATGCCAATTATTCTAA-ATAAATAG
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
*
15791 TTTAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * *
15813 ACGAGTTAATGTTATATGAATCTAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
15878 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * **
15900 AAGATTTAAAGCTATCTAAATCCAACCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
15965 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * *
15987 TATAGTTAAAGCTATCTAAATCCTGCCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAAAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
16052 -TAAAGGAGTTACACCTATCTTA
66 TTAAA-GAGTTACACCTATCTTA
* * * *
16074 AAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGGCAAGCAAATCATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
16139 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* ** * * *
16161 AAGATTTAAAGCTATCTGAATCCAACCAATTTGCTTAGACATGCCAATTATTCTAACAAAAATAA
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
*
16226 TTACAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * *
16248 AATAGTTAAAGCTATCTAAATCCAGCCA-TTTGCTTAGG-ATGCCAATTATTC-AACAAAAA-A-
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
16308 TATAAAGAGTTACACCTATCTTA
66 T-TAAAGAGTTACACCTATCTTA
* *
16331 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTG-TATAGGCAAGCAAATTATTCTAACAAAAATA
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCATGCCAATTATTCTAACAAAAATA
16395 CTTAAAGAGTTACACCTATCTTA
65 CTTAAAGAGTTACACCTATCTTA
16418 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG-ATTGCCAATTATTCTAACAAAAAAT
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCA-TGCCAATTATTCTAAC-AAAAAT
* *
16482 ACTTAAGGAGTTACTCCTATCTTA
64 ACTTAAAGAGTTACACCTATCTTA
* * * * * *
16506 AAGCGTTAAAGCTATCTAAATCCACTCAATTTACTTAGGCATGCCAATTATTCTAACAAAAATGC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
16571 TTAAAGAGTTACA-CTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * *
16592 AAGAGTTAAAGCTATCTAAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAAAA
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAAATA
**
16657 CTTACGGAGTTACACCAATAT-TTA
65 CTTAAAGAGTTACACC--TATCTTA
* *
16681 AA-AGTTAAAGATATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTTTTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
16745 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * * **
16767 ATGAGTTAATGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTAATCTAACAAAATTTG
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
16832 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * *
16854 ACGAGTTAATGCTATATGAATCTAATCATTTTGCTTAGGCATGCCAAGTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
16919 TTAAAGAGTTACA-CTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * **
16940 AAGACTTAAAGCTATTTGAATCCAACCATTTT-CTTAGGCATGCCAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* *
17004 TTACAGAGTTACACTTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * *
17026 AATAGTTAAAGCTAACTGAATCCAGTCATTTTTCTTAGGCATGCCAATTTTTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
17091 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * *
17113 ATGAGTTAAAGATATATGAATCAAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAG
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
17178 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * * *
17200 ACGAGTTAATGCTATATGAATCTAATCATCTTGCTTAGGCATGCCAAGTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
*
17265 TTAAAGAGTTACACCTATCTTT
66 TTAAAGAGTTACACCTATCTTA
* * ** *
17287 AAGAGTTAAAGCTATCTAAATCAAACCATTTTTCTTAGGCATGCCAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
17352 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* *
17374 AAGAGTTAAAGCTATATGAATCCAGTAATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
*
17439 TTAAAGAGTTTCACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* *
17461 AAGAGTTAAAGCTATCTG-----A-TCATTTTCCTTAGGCAAGCCAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
17520 -TAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * * * *
17541 AAGAGTTAAAGCTAACTGAATCCAGTCATTTTACTTAAGTAGGCTAATTTTTTTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
17606 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * * *
17628 ATGAGTTAAAGCTATATGAATCCAATTATTTTTCTTAGGTATGTC-A--A-TCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
17689 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * * *
17711 ATGAGTTAAAGTTATATGAATCCAATCATTTTGCTTAGGCATTCAAATTATTCTAACAAAATATA
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA-ATA
* *
17776 CTTAAAGTGTCACACCTATCTTA
65 CTTAAAGAGTTACACCTATCTTA
* **
17799 AAGAGTTAAAGCTATCTGAATCCAGTAATTTTGCTTAGGCATGAAAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
17864 TTAAAGAGTTACACCTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* * * * *
17886 AAGAGTTAATGCTATCTGAATCCATTAATTTTGCTTAGGCATGCAAATTATTCTAACAAAAATAG
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
17951 TTAAAGAGTTACA-CTATCTTA
66 TTAAAGAGTTACACCTATCTTA
* *
17972 ATGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATT-TAACAAAAAATC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAAATA
* *
18036 CTTAAACAGTTACTCCTATCTTA
65 CTTAAAGAGTTACACCTATCTTA
* * * * * * *
18059 AAGCGTTAAAACTATCTGAATCCAGTCATTTTACTGAGGCAAGACAATTATTCTAACAAAAAAAC
1 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
18124 TTAAAGAGTTA
66 TTAAAGAGTTA
18135 AAGCTATTTG
Statistics
Matches: 2214, Mismatches: 243, Indels: 75
0.87 0.10 0.03
Matches are distributed among these distances:
80 37 0.02
81 37 0.02
82 2 0.00
83 120 0.05
84 17 0.01
85 75 0.03
86 351 0.16
87 1349 0.61
88 217 0.10
89 6 0.00
90 3 0.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (87 bp):
AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
TTAAAGAGTTACACCTATCTTA
Found at i:15741 original size:19 final size:19
Alignment explanation
Indices: 15705--15743 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
15695 ACAAAAATAA
*
15705 TTAAAGAGTTACACCTATC
1 TTAAAGAGTTAAACCTATC
*
15724 TTAAAGAGTTAAAGCTATC
1 TTAAAGAGTTAAACCTATC
15743 T
1 T
15744 GAATCCAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (19 bp):
TTAAAGAGTTAAACCTATC
Found at i:15914 original size:19 final size:19
Alignment explanation
Indices: 15877--15916 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15867 AACAAAAATA
*
15877 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
* *
15896 CTTAAAGATTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
15915 CT
1 CT
15917 AAATCCAACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:16088 original size:19 final size:20
Alignment explanation
Indices: 16052--16090 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
16042 ACAAAAAAAC
*
16052 TAAAGGAGTTACACCTATCT
1 TAAAGGAGTTAAACCTATCT
*
16072 TAAA-GAGTTAAAGCTATCT
1 TAAAGGAGTTAAACCTATCT
16091 GAATCTAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (20 bp):
TAAAGGAGTTAAACCTATCT
Found at i:16175 original size:19 final size:19
Alignment explanation
Indices: 16138--16177 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
16128 AACAAAAATA
*
16138 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
* *
16157 CTTAAAGATTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
16176 CT
1 CT
16178 GAATCCAACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:16185 original size:261 final size:260
Alignment explanation
Indices: 15554--18479 Score: 3768
Period size: 261 Copynumber: 11.4 Consensus size: 260
15544 AAAAAAACTT
* * * *
15554 AAGAGTTAAAGCTAT-TGAATCCAATCATTTTGCTTGGGCTTGTCAATTTTTCTAACAAAAATAC
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* * * * *
15618 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTAAATCCAGTTAATTTCCTTAGGCATG
66 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
* *
15683 CCAATTAATCTAACAAAAATAATTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
131 CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
* * * * * *
15748 CCAATCATATTGCCTAGGCATGCCAATTATTCTAA-ATAAATAGTTTAAGAGTTACACCTATCTT
196 CCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATA-CTAAAGAGTTACACCTATCTT
15812 A
260 A
* * * *
15813 ACGAGTTAATGTTATATGAATCTAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* * *
15878 TTAAAGAGTTACACCTATCTTAAAGATTTAAAGCTATCTAAATCCAACCATTTTGCTTAGGCATG
66 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
* * *
15943 CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTATATAGTTAAAGCTATCTAAAT
131 CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
* * *
16008 CCTGCCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAAACTAAAGGAGTTACACCTATCTT
196 CCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTAAA-GAGTTACACCTATCTT
16073 A
260 A
* * * * * *
16074 AAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGGCAAGCAAATCATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* * * *
16139 TTAAAGAGTTACACCTATCTTAAAGATTTAAAGCTATCTGAATCCAACCAATTTGCTTAGACATG
66 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
* * * *
16204 CCAATTATTCTAACAAAAATAATTACAGAGTTACACCTATCTTAAATAGTTAAAGCTATCTAAAT
131 CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
*
16269 CCAGCCA-TTTGCTTAGG-ATGCCAATTATTC-AACAAAAAATA-TAAAGAGTTACACCTATCTT
196 CCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAAATACTAAAGAGTTACACCTATCTT
16330 A
260 A
* * * *
16331 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTG-TATAGGCAAGCAAATTATTCTAACAAAAATA
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCT-TAGGCATGCCAATTATTCTAACAAAAATA
*
16395 CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG-AT
65 CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCA-
* * * *
16459 TGCCAATTATTCTAACAAAAAATACTTAAGGAGTTACTCCTATCTTAAAGCGTTAAAGCTATCTA
129 TGCCAATTATTCTAAC-AAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTG
* * * *
16524 AATCCACTCAATTTACTTAGGCATGCCAATTATTCTAACAAAAATGCTTAAAGAGTTACA-CTAT
193 AATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC-TAAAGAGTTACACCTAT
16588 CTTA
257 CTTA
* * * * *
16592 AAGAGTTAAAGCTATCTAAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAAAA
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAAATA
** * *
16657 CTTACGGAGTTACACCAATAT-TTAAA-AGTTAAAGATATCTGAATCCAGTCATTTTGCTTAGGC
65 CTTAAAGAGTTACACC--TATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGC
* * * *
16720 ATGCCAATTTTTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAATGAGTTAATGCTATATG
128 ATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTG
* * * **
16785 AATCCAATCATTTTGCTTAGGCATGCCAATTAATCTAACAAAATTTGTTAAAGAGTTACACCTAT
193 AATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA-ATACTAAAGAGTTACACCTAT
16850 CTTA
257 CTTA
* * * *
16854 ACGAGTTAATGCTATATGAATCTAATCATTTTGCTTAGGCATGCCAAGTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* * *
16919 TTAAAGAGTTACA-CTATCTTAAAGACTTAAAGCTATTTGAATCCAACCATTTT-CTTAGGCATG
66 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
* * * *
16982 CCAATTATTCTAACAAAAATACTTACAGAGTTACACTTATCTTAAATAGTTAAAGCTAACTGAAT
131 CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
* *
17047 CCAGTCATTTTTCTTAGGCATGCCAATTTTTCTAACAAAAATACTTAAAGAGTTACACCTATCTT
196 CCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC-TAAAGAGTTACACCTATCTT
17112 A
260 A
* * * *
17113 ATGAGTTAAAGATATATGAATCAAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAG
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* * * * *
17178 TTAAAGAGTTACACCTATCTTAACGAGTTAATGCTATATGAATCTAATCATCTTGCTTAGGCATG
66 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
* * *
17243 CCAAGTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTTAAGAGTTAAAGCTATCTAAAT
131 CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
* ** *
17308 CAAACCATTTTTCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTT
196 CCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC-TAAAGAGTTACACCTATCTT
17373 A
260 A
* *
17374 AAGAGTTAAAGCTATATGAATCCAGTAATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* * *
17439 TTAAAGAGTTTCACCTATCTTAAAGAGTTAAAGCTATCTG------ATCATTTTCCTTAGGCAAG
66 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
*
17498 CCAATTATTCTAACAAAAATAC-TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAAT
131 CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
* * * * * * *
17562 CCAGTCATTTTACTTAAGTAGGCTAATTTTTTTAACAAAAATACTTAAAGAGTTACACCTATCTT
196 CCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC-TAAAGAGTTACACCTATCTT
17627 A
260 A
* * * * *
17628 ATGAGTTAAAGCTATATGAATCCAATTATTTTTCTTAGGTATGTC-A--A-TCTAACAAAAATAC
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* * * *
17689 TTAAAGAGTTACACCTATCTTAATGAGTTAAAGTTATATGAATCCAATCATTTTGCTTAGGCATT
66 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
* * *
17754 CAAATTATTCTAACAAAATATACTTAAAGTGTCACACCTATCTTAAAGAGTTAAAGCTATCTGAA
131 CCAATTATTCTAACAAAA-ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA
* **
17819 TCCAGTAATTTTGCTTAGGCATGAAAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCT
195 TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC-TAAAGAGTTACACCTATCT
17884 TA
259 TA
* * * * * *
17886 AAGAGTTAATGCTATCTGAATCCATTAATTTTGCTTAGGCATGCAAATTATTCTAACAAAAATAG
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* *
17951 TTAAAGAGTTACA-CTATCTTAATGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATG
66 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
* * * * *
18015 CCAATTATT-TAACAAAAAATCCTTAAACAGTTACTCCTATCTTAAAGCGTTAAAACTATCTGAA
131 CCAATTATTCTAAC-AAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA
* * * *
18079 TCCAGTCATTTTACTGAGGCAAGACAATTATTCT-------A-AC-AAA-A---A-A---A-CTT
195 TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTAAAGAGTTACACCTATCTT
18126 A
260 A
* * * *
18127 AAGAGTTAAAGCTATTTGAATCCAATCATTTTGCTTGGGC-TGTCAATTTTTCTAACAAAAATAC
1 AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
* * * * * *
18191 TTATAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTAAATCCAGTTAATTTCCTTAGGCATG
66 TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
*
18256 CCAATTATTCTAA-AAAAATACTTAAAGAGTT--A-C-A-CTT-AAGTGTTAAAGCTATCT-AAT
131 CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA-
* *
18313 TCCAGTCATTTTGCTTAGGCATGCCAATTGTTCTAAC--AAACACTGAAAGAGTTACACCTATCT
195 TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACT-AAAGAGTTACACCTATCT
18376 TA
259 TA
* * *
18378 AAGAGTTAAAGCTA-ACTGAATCCAGTCATTTTGCTTAAGCATGCCAATTTTTCTAACAAAAATA
1 AAGAGTTAAAGCTATA-TGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATA
* *
18442 CTTAAATAGTTACACCTATCTTAATGAGTTAAAGCTAT
65 CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAT
18480 ATGTGTAACC
Statistics
Matches: 2359, Mismatches: 249, Indels: 125
0.86 0.09 0.05
Matches are distributed among these distances:
233 2 0.00
234 44 0.02
235 3 0.00
236 1 0.00
237 1 0.00
239 1 0.00
240 50 0.02
241 94 0.04
242 7 0.00
243 1 0.00
245 1 0.00
246 2 0.00
247 1 0.00
249 1 0.00
250 54 0.02
251 40 0.02
252 59 0.03
253 2 0.00
254 134 0.06
255 37 0.02
256 35 0.01
257 154 0.07
258 193 0.08
259 242 0.10
260 355 0.15
261 666 0.28
262 170 0.07
263 6 0.00
264 3 0.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (260 bp):
AAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATAC
TTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATG
CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
CCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTAAAGAGTTACACCTATCTTA
Found at i:16345 original size:19 final size:19
Alignment explanation
Indices: 16310--16347 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
16300 ACAAAAAATA
*
16310 TAAAGAGTTACACCTATCT
1 TAAAGAGTTAAACCTATCT
*
16329 TAAAGAGTTAAAGCTATCT
1 TAAAGAGTTAAACCTATCT
16348 GAATCCAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
TAAAGAGTTAAACCTATCT
Found at i:16432 original size:19 final size:19
Alignment explanation
Indices: 16395--16434 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
16385 AACAAAAATA
*
16395 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
16414 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
16433 CT
1 CT
16435 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:16611 original size:18 final size:18
Alignment explanation
Indices: 16570--16608 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
16560 AACAAAAATG
*
16570 CTTAAAGAGTTACACTAT
1 CTTAAAGAGTTAAACTAT
16588 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAA-CTAT
16607 CT
1 CT
16609 AAATCTAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGAGTTAAACTAT
Found at i:17388 original size:19 final size:19
Alignment explanation
Indices: 17351--17388 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
17341 AACAAAAATA
*
17351 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
17370 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
17389 ATGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:17475 original size:19 final size:19
Alignment explanation
Indices: 17438--17477 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
17428 AACAAAAATA
**
17438 CTTAAAGAGTTTCACCTAT
1 CTTAAAGAGTTAAACCTAT
*
17457 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
17476 CT
1 CT
17478 GATCATTTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:18199 original size:67 final size:68
Alignment explanation
Indices: 18055--18210 Score: 181
Period size: 67 Copynumber: 2.3 Consensus size: 68
18045 TTACTCCTAT
* *
18055 CTTAAAGCGTTAAAACTATCTGAATCCAGTCATTTTACTGAGGCAAGACAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAACTATCTGAATCCAATCATTTTACTGAGGCAAGACAATTATTCTAACAAAA
18120 AAA
66 AAA
* * * * * *
18123 CTTAAAGAGTTAAAGCTATTTGAATCCAATCATTTTGCTTG-GGC-TGTCAATTTTTCTAACAAA
1 CTTAAAGAGTTAAAACTATCTGAATCCAATCATTTTAC-TGAGGCAAGACAATTATTCTAACAAA
*
18186 AATA
65 AAAA
* * *
18190 CTTATAGAGTTACACCTATCT
1 CTTAAAGAGTTAAAACTATCT
18211 TAAAGAGTTA
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
67 36 0.49
68 36 0.49
69 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.33
Consensus pattern (68 bp):
CTTAAAGAGTTAAAACTATCTGAATCCAATCATTTTACTGAGGCAAGACAATTATTCTAACAAAA
AAA
Found at i:18227 original size:19 final size:19
Alignment explanation
Indices: 18190--18229 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
18180 AACAAAAATA
* *
18190 CTTATAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
18209 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
18228 CT
1 CT
18230 AAATCCAGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:18273 original size:86 final size:87
Alignment explanation
Indices: 18123--18479 Score: 464
Period size: 86 Copynumber: 4.2 Consensus size: 87
18113 AACAAAAAAA
* * * * *
18123 CTTAAAGAGTTAAAGCTATTTGAATCCAATCATTTTGCTTGGGC-TGTCAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTAAATCCAGTCATTTTGCTTAGGCATGCCAATTTTTCTAACAAAA
*
18187 ATACTTATAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * *
18209 CTTAAAGAGTTAAAGCTATCTAAATCCAGTTAATTTCCTTAGGCATGCCAATTATTCTAA-AAAA
1 CTTAAAGAGTTAAAGCTATCTAAATCCAGTCATTTTGCTTAGGCATGCCAATTTTTCTAACAAAA
18273 ATACTTAAAGAGTT--A-C-A-
66 ATACTTAAAGAGTTACACCTAT
* * *
18290 CTT-AAGTGTTAAAGCTATCTAATTCCAGTCATTTTGCTTAGGCATGCCAATTGTTCTAAC--AA
1 CTTAAAGAGTTAAAGCTATCTAAATCCAGTCATTTTGCTTAGGCATGCCAATTTTTCTAACAAAA
* *
18352 ACACTGAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
18374 CTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTTAAGCATGCCAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTAAATCCAGTCATTTTGCTTAGGCATGCCAATTTTTCTAACAAAA
*
18439 ATACTTAAATAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
18461 CTTAATGAGTTAAAGCTAT
1 CTTAAAGAGTTAAAGCTAT
18480 ATGTGTAACC
Statistics
Matches: 232, Mismatches: 29, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.06
80 50 0.22
81 4 0.02
82 2 0.01
83 2 0.01
84 4 0.02
85 51 0.22
86 54 0.23
87 51 0.22
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.34
Consensus pattern (87 bp):
CTTAAAGAGTTAAAGCTATCTAAATCCAGTCATTTTGCTTAGGCATGCCAATTTTTCTAACAAAA
ATACTTAAAGAGTTACACCTAT
Found at i:19189 original size:35 final size:35
Alignment explanation
Indices: 19116--19190 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
19106 CGTCACTAAC
**
19116 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
* *
19151 AGTAAGGCCCTGAGCACACAGCCGAGGAGCCTCCA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
19186 AGTAA
1 AGTAA
19191 TCCTCCAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.29, G:0.29, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
Found at i:19245 original size:22 final size:22
Alignment explanation
Indices: 19220--19287 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
19210 AATAAAACAT
*
19220 AATTCAAGTCAAGTATCATATC
1 AATTCAAGTCAAGTATCAGATC
* *
19242 AATTCAGGTCATGTATCAGATC
1 AATTCAAGTCAAGTATCAGATC
* *
19264 AGAATCCATGTCAA-TATCAGATC
1 --AATTCAAGTCAAGTATCAGATC
19287 A
1 A
19288 GAATCCAGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 19 0.50
23 9 0.24
24 9 0.24
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (22 bp):
AATTCAAGTCAAGTATCAGATC
Found at i:19281 original size:23 final size:23
Alignment explanation
Indices: 19246--19314 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
19236 CATATCAATT
*
19246 CAGGTCATGTATCAGATCAGAATC
1 CAGGTCA-ATATCAGATCAGAATC
*
19270 CATGTCAATATCAGATCAGAATC
1 CAGGTCAATATCAGATCAGAATC
* *
19293 CAGGTCAATATCATAACAGAAT
1 CAGGTCAATATCAGATCAGAAT
19315 TCAAATTTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 34 0.85
24 6 0.15
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (23 bp):
CAGGTCAATATCAGATCAGAATC
Found at i:21825 original size:7 final size:7
Alignment explanation
Indices: 21813--21843 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
21803 TGGTCAACTC
21813 CGGTCAA
1 CGGTCAA
21820 CGGTCAA
1 CGGTCAA
*
21827 CGGTTAA
1 CGGTCAA
21834 CGGTCAA
1 CGGTCAA
21841 CGG
1 CGG
21844 GTCGGGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.32, T:0.16
Consensus pattern (7 bp):
CGGTCAA
Done.