Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007659.1 Hibiscus syriacus cultivar Beakdansim tig00025513_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 47187
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33


File 3 of 3

Found at i:47173 original size:19 final size:19

Alignment explanation


    Indices: 47149--47187  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

      47139 GATTGGATTC

                        *      
      47149 AGATAGCTCTAATTCTTTA
          1 AGATAGCTCTAACTCTTTA

                  * *          
      47168 AGATAGGTGTAACTCTTTA
          1 AGATAGCTCTAACTCTTTA

             
      47187 A
          1 A


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38


Consensus pattern (19 bp):   
AGATAGCTCTAACTCTTTA

Done.