genome.fa.s766.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000766.1 Hibiscus syriacus cultivar Beakdansim tig00001488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67300

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166--244	26	3.1	25	83	5	95	26	11	3	58	1.50
1225--1257	16	2.1	16	94	0	57	51	0	0	48	1.00
1514--1570	24	2.3	25	82	8	73	45	0	0	54	0.99
1622--1676	20	2.8	20	72	22	53	52	0	0	47	1.00
1636--1695	20	3.0	20	76	9	59	46	1	0	51	1.10
1690--1743	17	3.0	17	77	15	54	59	0	1	38	1.08
1686--1726	20	2.1	19	86	13	57	53	0	0	46	1.00
1697--1737	20	2.0	20	85	0	55	58	0	2	39	1.11
8029--8057	2	14.5	2	100	0	58	51	0	0	48	1.00
13733--13866	22	6.1	22	95	0	241	52	0	29	18	1.46
15287--15346	13	4.6	12	78	15	57	75	3	1	20	1.04
15286--15363	26	3.1	25	77	17	72	75	3	2	17	1.07
15327--15362	19	1.9	18	88	5	54	77	2	2	16	1.00
16629--16673	23	1.9	24	81	4	56	53	8	0	37	1.32
16606--16728	37	3.3	35	78	12	113	51	4	0	43	1.29
16691--16759	30	2.2	32	85	7	90	44	4	4	46	1.43
16798--17040	36	6.9	36	74	14	202	44	6	4	44	1.50
16832--16907	27	2.8	27	82	7	82	43	2	6	47	1.43
16861--16917	27	2.1	28	83	9	73	40	3	7	49	1.47
16847--17037	75	2.5	75	82	5	208	45	6	4	43	1.48
16879--17060	36	4.9	38	77	12	130	43	8	3	44	1.52
16903--17060	75	2.1	74	84	5	199	43	9	3	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17757--18677	84	11.2	83	76	5	695	24	20	25	30	1.99
17757--18677	165	5.6	164	79	4	857	24	20	25	30	1.99
17906--18652	248	3.0	247	90	1	1104	24	20	25	29	1.99
23833--23895	26	2.4	25	84	12	74	77	3	1	17	0.97
23874--23909	19	1.9	18	88	5	54	77	0	5	16	0.94
24698--24731	17	2.1	17	88	5	52	5	11	29	52	1.61
25161--25208	25	1.9	25	82	0	60	54	10	0	35	1.35
25140--25263	37	3.3	36	78	13	108	51	5	0	41	1.31
25367--25435	27	2.6	26	81	6	75	44	2	5	46	1.42
25388--25441	27	2.0	27	89	3	83	38	1	7	51	1.41
25416--25488	31	2.3	31	90	2	110	45	5	4	45	1.45
25414--25565	37	4.4	35	76	12	145	45	7	3	42	1.51
25674--25710	2	18.5	2	100	0	74	51	0	0	48	1.00
29279--29313	18	1.9	18	88	0	52	54	5	2	37	1.39
29526--29594	36	1.9	36	93	0	120	47	20	17	14	1.82
29700--29735	16	2.2	17	90	5	56	47	5	5	41	1.50
31338--31395	30	1.9	30	89	0	89	20	29	3	46	1.67
37497--37916	128	3.3	126	83	2	475	26	18	27	27	1.98
37564--37951	126	3.1	125	86	3	501	26	18	26	28	1.98
38054--38127	37	2.0	38	86	2	105	37	10	18	32	1.86
38439--38491	25	2.0	28	85	10	76	54	1	11	32	1.47
43283--43325	3	14.0	3	86	13	61	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50986--51039	3	18.0	3	84	0	72	37	0	1	61	1.07
52544--52583	11	3.5	11	86	10	53	32	2	0	65	1.06
54273--54344	36	2.0	36	91	0	117	41	18	11	29	1.84
55054--55119	6	10.3	6	77	9	51	21	13	9	56	1.65
55055--55119	26	2.5	26	85	5	87	20	13	9	56	1.64
55059--55127	14	5.2	13	76	13	61	18	15	10	55	1.68
59055--59087	12	2.8	12	95	0	57	24	21	24	30	1.99
62046--62181	52	2.6	54	79	4	168	36	15	22	25	1.94
62545--62599	22	2.5	22	90	0	83	38	9	12	40	1.75
63363--63510	45	3.3	45	87	2	217	24	24	19	31	1.98
63403--63628	119	1.9	117	92	1	380	23	22	20	34	1.97
63274--64124	163	5.1	163	75	15	720	24	21	19	33	1.97
63447--63583	74	1.9	73	93	1	238	23	20	20	35	1.96
63521--63721	45	4.5	45	91	4	309	23	22	20	32	1.98
63522--63721	89	2.2	91	89	6	311	24	22	21	32	1.98
63363--64124	208	3.7	209	78	12	779	24	22	19	33	1.97
63611--63906	118	2.5	118	87	5	417	24	20	20	33	1.97
63848--64124	44	6.2	45	85	5	332	25	22	18	34	1.96
63848--64124	89	3.1	89	85	4	337	25	22	18	34	1.96

Tables:   1

The End!